Multiple sequence alignment - TraesCS5B01G394600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G394600 chr5B 100.000 2837 0 0 1 2837 572365662 572362826 0.000000e+00 5240
1 TraesCS5B01G394600 chr5B 82.533 458 62 16 1386 1837 572379188 572378743 1.230000e-103 387
2 TraesCS5B01G394600 chr5B 89.496 238 23 2 1411 1647 572390523 572390287 1.650000e-77 300
3 TraesCS5B01G394600 chr5B 91.477 176 15 0 1154 1329 572390800 572390625 2.820000e-60 243
4 TraesCS5B01G394600 chr5A 83.134 1755 147 72 201 1880 585418178 585416498 0.000000e+00 1463
5 TraesCS5B01G394600 chr5A 89.615 597 48 8 2016 2601 585416404 585415811 0.000000e+00 747
6 TraesCS5B01G394600 chr5A 81.698 683 83 34 1171 1839 585421584 585420930 5.380000e-147 531
7 TraesCS5B01G394600 chr5A 83.495 515 58 19 1151 1646 585430425 585429919 3.330000e-124 455
8 TraesCS5B01G394600 chr5A 91.339 254 19 3 2587 2837 585415796 585415543 7.520000e-91 344
9 TraesCS5B01G394600 chr5A 84.932 365 23 15 802 1162 585426836 585426500 9.730000e-90 340
10 TraesCS5B01G394600 chr5A 94.215 121 6 1 1874 1994 32796250 32796131 1.740000e-42 183
11 TraesCS5B01G394600 chr5A 94.059 101 6 0 1739 1839 585429004 585428904 1.360000e-33 154
12 TraesCS5B01G394600 chr5D 89.872 859 70 10 1982 2837 465011992 465011148 0.000000e+00 1088
13 TraesCS5B01G394600 chr5D 88.124 901 53 26 1000 1880 465012858 465011992 0.000000e+00 1022
14 TraesCS5B01G394600 chr5D 83.745 1052 98 36 790 1825 465022841 465021847 0.000000e+00 928
15 TraesCS5B01G394600 chr5D 81.983 605 63 28 1074 1648 465031836 465031248 3.310000e-129 472
16 TraesCS5B01G394600 chr5D 87.582 306 18 7 635 925 465013443 465013143 1.260000e-88 337
17 TraesCS5B01G394600 chr6B 96.296 108 4 0 1878 1985 23766365 23766472 8.080000e-41 178
18 TraesCS5B01G394600 chr3B 95.495 111 5 0 1876 1986 526281120 526281010 8.080000e-41 178
19 TraesCS5B01G394600 chr6A 93.913 115 7 0 1872 1986 596351414 596351528 1.040000e-39 174
20 TraesCS5B01G394600 chr6D 93.277 119 5 3 1875 1993 3196378 3196493 3.760000e-39 172
21 TraesCS5B01G394600 chr2A 93.220 118 7 1 1868 1985 17612981 17612865 3.760000e-39 172
22 TraesCS5B01G394600 chr1A 93.220 118 7 1 1879 1995 507077362 507077245 3.760000e-39 172
23 TraesCS5B01G394600 chr1A 92.500 120 8 1 1867 1985 387511474 387511355 1.350000e-38 171
24 TraesCS5B01G394600 chr1B 92.500 120 7 1 1869 1986 405127349 405127468 1.350000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G394600 chr5B 572362826 572365662 2836 True 5240.000000 5240 100.000000 1 2837 1 chr5B.!!$R1 2836
1 TraesCS5B01G394600 chr5B 572390287 572390800 513 True 271.500000 300 90.486500 1154 1647 2 chr5B.!!$R3 493
2 TraesCS5B01G394600 chr5A 585415543 585421584 6041 True 771.250000 1463 86.446500 201 2837 4 chr5A.!!$R2 2636
3 TraesCS5B01G394600 chr5A 585426500 585430425 3925 True 316.333333 455 87.495333 802 1839 3 chr5A.!!$R3 1037
4 TraesCS5B01G394600 chr5D 465021847 465022841 994 True 928.000000 928 83.745000 790 1825 1 chr5D.!!$R1 1035
5 TraesCS5B01G394600 chr5D 465011148 465013443 2295 True 815.666667 1088 88.526000 635 2837 3 chr5D.!!$R3 2202
6 TraesCS5B01G394600 chr5D 465031248 465031836 588 True 472.000000 472 81.983000 1074 1648 1 chr5D.!!$R2 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 3592 0.109781 CTCCATTGGTTTTGACGCGG 60.110 55.0 12.47 0.0 0.00 6.46 F
521 3747 0.250038 CATTCGCCGTGGAGGATGAT 60.250 55.0 5.03 0.0 45.00 2.45 F
1058 4538 0.451783 GGTCTTGGCATAACCGCAAG 59.548 55.0 3.37 0.0 43.94 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1360 4856 0.038159 GTGTCAGGGAGGAGTTCACG 60.038 60.0 0.00 0.0 33.09 4.35 R
1364 4860 0.104934 AGGTGTGTCAGGGAGGAGTT 60.105 55.0 0.00 0.0 0.00 3.01 R
2532 8683 0.034896 GGCGAAGTTCAGAAGGACCA 59.965 55.0 3.32 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.040504 GCTATACCCCTTCATTTTTAAGTGGG 59.959 42.308 0.00 0.00 38.96 4.61
26 27 2.903784 ACCCCTTCATTTTTAAGTGGGC 59.096 45.455 0.00 0.00 37.68 5.36
27 28 3.173151 CCCCTTCATTTTTAAGTGGGCT 58.827 45.455 0.00 0.00 31.76 5.19
28 29 3.582647 CCCCTTCATTTTTAAGTGGGCTT 59.417 43.478 0.00 0.00 38.66 4.35
29 30 4.322725 CCCCTTCATTTTTAAGTGGGCTTC 60.323 45.833 0.00 0.00 36.22 3.86
30 31 4.528206 CCCTTCATTTTTAAGTGGGCTTCT 59.472 41.667 0.00 0.00 36.22 2.85
32 33 4.519540 TCATTTTTAAGTGGGCTTCTGC 57.480 40.909 0.00 0.00 36.22 4.26
34 35 1.243902 TTTTAAGTGGGCTTCTGCGG 58.756 50.000 0.00 0.00 40.82 5.69
36 37 1.485294 TTAAGTGGGCTTCTGCGGGA 61.485 55.000 0.00 0.00 40.82 5.14
49 50 3.787001 CGGGAAGCACCTCTCCCC 61.787 72.222 1.54 0.00 39.18 4.81
50 51 2.285743 GGGAAGCACCTCTCCCCT 60.286 66.667 0.00 0.00 38.98 4.79
51 52 1.003051 GGGAAGCACCTCTCCCCTA 59.997 63.158 0.00 0.00 38.98 3.53
52 53 1.051556 GGGAAGCACCTCTCCCCTAG 61.052 65.000 0.00 0.00 38.98 3.02
53 54 0.325765 GGAAGCACCTCTCCCCTAGT 60.326 60.000 0.00 0.00 35.41 2.57
54 55 1.574263 GAAGCACCTCTCCCCTAGTT 58.426 55.000 0.00 0.00 0.00 2.24
55 56 1.483004 GAAGCACCTCTCCCCTAGTTC 59.517 57.143 0.00 0.00 0.00 3.01
56 57 0.713579 AGCACCTCTCCCCTAGTTCT 59.286 55.000 0.00 0.00 0.00 3.01
57 58 1.116308 GCACCTCTCCCCTAGTTCTC 58.884 60.000 0.00 0.00 0.00 2.87
58 59 1.619977 GCACCTCTCCCCTAGTTCTCA 60.620 57.143 0.00 0.00 0.00 3.27
60 61 3.379452 CACCTCTCCCCTAGTTCTCATT 58.621 50.000 0.00 0.00 0.00 2.57
62 63 3.246167 ACCTCTCCCCTAGTTCTCATTGT 60.246 47.826 0.00 0.00 0.00 2.71
63 64 3.133721 CCTCTCCCCTAGTTCTCATTGTG 59.866 52.174 0.00 0.00 0.00 3.33
64 65 4.026744 CTCTCCCCTAGTTCTCATTGTGA 58.973 47.826 0.00 0.00 0.00 3.58
66 67 4.467795 TCTCCCCTAGTTCTCATTGTGAAG 59.532 45.833 1.54 0.00 0.00 3.02
67 68 4.425772 TCCCCTAGTTCTCATTGTGAAGA 58.574 43.478 1.54 0.00 0.00 2.87
68 69 4.844085 TCCCCTAGTTCTCATTGTGAAGAA 59.156 41.667 1.54 0.00 0.00 2.52
69 70 5.309543 TCCCCTAGTTCTCATTGTGAAGAAA 59.690 40.000 1.54 0.00 0.00 2.52
70 71 6.003950 CCCCTAGTTCTCATTGTGAAGAAAA 58.996 40.000 1.54 0.00 0.00 2.29
71 72 6.150140 CCCCTAGTTCTCATTGTGAAGAAAAG 59.850 42.308 1.54 0.00 0.00 2.27
72 73 6.936900 CCCTAGTTCTCATTGTGAAGAAAAGA 59.063 38.462 1.54 0.00 0.00 2.52
73 74 7.118971 CCCTAGTTCTCATTGTGAAGAAAAGAG 59.881 40.741 1.54 0.00 0.00 2.85
74 75 6.311055 AGTTCTCATTGTGAAGAAAAGAGC 57.689 37.500 1.54 0.00 0.00 4.09
76 77 3.748048 TCTCATTGTGAAGAAAAGAGCGG 59.252 43.478 0.00 0.00 0.00 5.52
77 78 3.476552 TCATTGTGAAGAAAAGAGCGGT 58.523 40.909 0.00 0.00 0.00 5.68
78 79 3.250762 TCATTGTGAAGAAAAGAGCGGTG 59.749 43.478 0.00 0.00 0.00 4.94
79 80 2.613026 TGTGAAGAAAAGAGCGGTGA 57.387 45.000 0.00 0.00 0.00 4.02
81 82 3.275143 TGTGAAGAAAAGAGCGGTGAAA 58.725 40.909 0.00 0.00 0.00 2.69
82 83 3.692101 TGTGAAGAAAAGAGCGGTGAAAA 59.308 39.130 0.00 0.00 0.00 2.29
83 84 4.338118 TGTGAAGAAAAGAGCGGTGAAAAT 59.662 37.500 0.00 0.00 0.00 1.82
84 85 5.529430 TGTGAAGAAAAGAGCGGTGAAAATA 59.471 36.000 0.00 0.00 0.00 1.40
85 86 6.038825 TGTGAAGAAAAGAGCGGTGAAAATAA 59.961 34.615 0.00 0.00 0.00 1.40
87 88 6.262273 TGAAGAAAAGAGCGGTGAAAATAAGT 59.738 34.615 0.00 0.00 0.00 2.24
88 89 6.635030 AGAAAAGAGCGGTGAAAATAAGTT 57.365 33.333 0.00 0.00 0.00 2.66
89 90 7.739498 AGAAAAGAGCGGTGAAAATAAGTTA 57.261 32.000 0.00 0.00 0.00 2.24
90 91 8.161699 AGAAAAGAGCGGTGAAAATAAGTTAA 57.838 30.769 0.00 0.00 0.00 2.01
91 92 8.290325 AGAAAAGAGCGGTGAAAATAAGTTAAG 58.710 33.333 0.00 0.00 0.00 1.85
94 95 3.442625 AGCGGTGAAAATAAGTTAAGCCC 59.557 43.478 0.00 0.00 0.00 5.19
95 96 3.428452 GCGGTGAAAATAAGTTAAGCCCC 60.428 47.826 0.00 0.00 0.00 5.80
97 98 4.090819 GGTGAAAATAAGTTAAGCCCCCA 58.909 43.478 0.00 0.00 0.00 4.96
100 101 4.959839 TGAAAATAAGTTAAGCCCCCATCC 59.040 41.667 0.00 0.00 0.00 3.51
101 102 3.612795 AATAAGTTAAGCCCCCATCCC 57.387 47.619 0.00 0.00 0.00 3.85
102 103 1.988539 TAAGTTAAGCCCCCATCCCA 58.011 50.000 0.00 0.00 0.00 4.37
103 104 1.089123 AAGTTAAGCCCCCATCCCAA 58.911 50.000 0.00 0.00 0.00 4.12
104 105 1.089123 AGTTAAGCCCCCATCCCAAA 58.911 50.000 0.00 0.00 0.00 3.28
105 106 1.435168 AGTTAAGCCCCCATCCCAAAA 59.565 47.619 0.00 0.00 0.00 2.44
107 108 1.089123 TAAGCCCCCATCCCAAAACT 58.911 50.000 0.00 0.00 0.00 2.66
108 109 1.089123 AAGCCCCCATCCCAAAACTA 58.911 50.000 0.00 0.00 0.00 2.24
109 110 1.089123 AGCCCCCATCCCAAAACTAA 58.911 50.000 0.00 0.00 0.00 2.24
110 111 1.007118 AGCCCCCATCCCAAAACTAAG 59.993 52.381 0.00 0.00 0.00 2.18
112 113 1.007118 CCCCCATCCCAAAACTAAGCT 59.993 52.381 0.00 0.00 0.00 3.74
113 114 2.102578 CCCCATCCCAAAACTAAGCTG 58.897 52.381 0.00 0.00 0.00 4.24
114 115 1.478105 CCCATCCCAAAACTAAGCTGC 59.522 52.381 0.00 0.00 0.00 5.25
115 116 2.450476 CCATCCCAAAACTAAGCTGCT 58.550 47.619 0.00 0.00 0.00 4.24
117 118 3.629398 CCATCCCAAAACTAAGCTGCTAG 59.371 47.826 0.90 3.64 0.00 3.42
118 119 4.517285 CATCCCAAAACTAAGCTGCTAGA 58.483 43.478 0.90 0.00 0.00 2.43
119 120 4.634012 TCCCAAAACTAAGCTGCTAGAA 57.366 40.909 0.90 0.00 0.00 2.10
120 121 4.579869 TCCCAAAACTAAGCTGCTAGAAG 58.420 43.478 0.90 3.77 0.00 2.85
121 122 3.127721 CCCAAAACTAAGCTGCTAGAAGC 59.872 47.826 15.63 15.63 43.88 3.86
122 123 3.127721 CCAAAACTAAGCTGCTAGAAGCC 59.872 47.826 19.77 1.43 44.68 4.35
123 124 3.990959 AAACTAAGCTGCTAGAAGCCT 57.009 42.857 19.77 9.30 44.68 4.58
124 125 3.535280 AACTAAGCTGCTAGAAGCCTC 57.465 47.619 19.77 0.00 44.68 4.70
126 127 2.834549 ACTAAGCTGCTAGAAGCCTCAA 59.165 45.455 19.77 1.53 44.68 3.02
127 128 2.867109 AAGCTGCTAGAAGCCTCAAA 57.133 45.000 19.77 0.00 44.68 2.69
128 129 2.867109 AGCTGCTAGAAGCCTCAAAA 57.133 45.000 19.77 0.00 44.68 2.44
129 130 2.709213 AGCTGCTAGAAGCCTCAAAAG 58.291 47.619 19.77 0.00 44.68 2.27
130 131 2.304180 AGCTGCTAGAAGCCTCAAAAGA 59.696 45.455 19.77 0.00 44.68 2.52
131 132 3.077359 GCTGCTAGAAGCCTCAAAAGAA 58.923 45.455 12.21 0.00 41.51 2.52
132 133 3.693578 GCTGCTAGAAGCCTCAAAAGAAT 59.306 43.478 12.21 0.00 41.51 2.40
133 134 4.201901 GCTGCTAGAAGCCTCAAAAGAATC 60.202 45.833 12.21 0.00 41.51 2.52
134 135 3.935203 TGCTAGAAGCCTCAAAAGAATCG 59.065 43.478 0.00 0.00 41.51 3.34
135 136 3.311048 GCTAGAAGCCTCAAAAGAATCGG 59.689 47.826 0.00 0.00 34.48 4.18
136 137 2.087646 AGAAGCCTCAAAAGAATCGGC 58.912 47.619 0.00 0.00 40.99 5.54
137 138 1.133216 GAAGCCTCAAAAGAATCGGCC 59.867 52.381 0.00 0.00 41.60 6.13
138 139 0.681243 AGCCTCAAAAGAATCGGCCC 60.681 55.000 0.00 0.00 41.60 5.80
139 140 0.681243 GCCTCAAAAGAATCGGCCCT 60.681 55.000 0.00 0.00 34.75 5.19
140 141 1.839424 CCTCAAAAGAATCGGCCCTT 58.161 50.000 0.00 0.00 0.00 3.95
141 142 2.944094 GCCTCAAAAGAATCGGCCCTTA 60.944 50.000 0.00 0.00 34.75 2.69
142 143 2.945668 CCTCAAAAGAATCGGCCCTTAG 59.054 50.000 0.00 0.00 0.00 2.18
143 144 3.370527 CCTCAAAAGAATCGGCCCTTAGA 60.371 47.826 0.00 0.00 0.00 2.10
144 145 4.261801 CTCAAAAGAATCGGCCCTTAGAA 58.738 43.478 0.00 0.00 0.00 2.10
145 146 4.855340 TCAAAAGAATCGGCCCTTAGAAT 58.145 39.130 0.00 0.00 0.00 2.40
146 147 5.261216 TCAAAAGAATCGGCCCTTAGAATT 58.739 37.500 0.00 0.00 0.00 2.17
147 148 5.714806 TCAAAAGAATCGGCCCTTAGAATTT 59.285 36.000 0.00 0.00 0.00 1.82
149 150 4.503714 AGAATCGGCCCTTAGAATTTCA 57.496 40.909 0.00 0.00 0.00 2.69
150 151 5.053978 AGAATCGGCCCTTAGAATTTCAT 57.946 39.130 0.00 0.00 0.00 2.57
151 152 4.823989 AGAATCGGCCCTTAGAATTTCATG 59.176 41.667 0.00 0.00 0.00 3.07
152 153 2.930950 TCGGCCCTTAGAATTTCATGG 58.069 47.619 0.00 0.00 0.00 3.66
153 154 2.241176 TCGGCCCTTAGAATTTCATGGT 59.759 45.455 0.00 0.00 0.00 3.55
154 155 3.456644 TCGGCCCTTAGAATTTCATGGTA 59.543 43.478 0.00 0.00 0.00 3.25
156 157 4.642885 CGGCCCTTAGAATTTCATGGTAAA 59.357 41.667 0.00 0.00 0.00 2.01
157 158 5.126384 CGGCCCTTAGAATTTCATGGTAAAA 59.874 40.000 0.00 0.00 0.00 1.52
158 159 6.183360 CGGCCCTTAGAATTTCATGGTAAAAT 60.183 38.462 0.00 0.00 0.00 1.82
159 160 7.564793 GGCCCTTAGAATTTCATGGTAAAATT 58.435 34.615 0.00 3.87 38.64 1.82
160 161 8.046708 GGCCCTTAGAATTTCATGGTAAAATTT 58.953 33.333 0.00 0.00 36.66 1.82
166 167 8.532977 AGAATTTCATGGTAAAATTTTCACGG 57.467 30.769 6.72 0.00 36.66 4.94
168 169 5.461032 TTCATGGTAAAATTTTCACGGCT 57.539 34.783 6.72 0.00 0.00 5.52
169 170 6.576662 TTCATGGTAAAATTTTCACGGCTA 57.423 33.333 6.72 0.00 0.00 3.93
171 172 5.708230 TCATGGTAAAATTTTCACGGCTAGT 59.292 36.000 6.72 0.00 0.00 2.57
172 173 6.879993 TCATGGTAAAATTTTCACGGCTAGTA 59.120 34.615 6.72 0.00 0.00 1.82
173 174 6.730960 TGGTAAAATTTTCACGGCTAGTAG 57.269 37.500 6.72 0.00 0.00 2.57
174 175 5.122711 TGGTAAAATTTTCACGGCTAGTAGC 59.877 40.000 14.09 14.09 41.46 3.58
175 176 5.122711 GGTAAAATTTTCACGGCTAGTAGCA 59.877 40.000 23.24 1.44 44.75 3.49
176 177 5.699097 AAAATTTTCACGGCTAGTAGCAA 57.301 34.783 23.24 8.49 44.75 3.91
178 179 2.088950 TTTCACGGCTAGTAGCAACC 57.911 50.000 23.24 5.70 44.75 3.77
179 180 1.263356 TTCACGGCTAGTAGCAACCT 58.737 50.000 23.24 0.00 44.75 3.50
181 182 0.246635 CACGGCTAGTAGCAACCTGT 59.753 55.000 23.24 10.26 44.75 4.00
182 183 0.531200 ACGGCTAGTAGCAACCTGTC 59.469 55.000 23.24 3.56 44.75 3.51
183 184 0.530744 CGGCTAGTAGCAACCTGTCA 59.469 55.000 23.24 0.00 44.75 3.58
184 185 1.736032 CGGCTAGTAGCAACCTGTCAC 60.736 57.143 23.24 2.14 44.75 3.67
185 186 1.550976 GGCTAGTAGCAACCTGTCACT 59.449 52.381 23.24 0.00 44.75 3.41
186 187 2.611518 GCTAGTAGCAACCTGTCACTG 58.388 52.381 17.47 0.00 41.89 3.66
187 188 2.231478 GCTAGTAGCAACCTGTCACTGA 59.769 50.000 17.47 0.00 41.89 3.41
190 191 2.434336 AGTAGCAACCTGTCACTGAACA 59.566 45.455 0.00 0.00 0.00 3.18
191 192 1.959042 AGCAACCTGTCACTGAACAG 58.041 50.000 0.00 0.00 45.10 3.16
198 199 2.430465 CTGTCACTGAACAGGAATGGG 58.570 52.381 6.76 0.00 42.42 4.00
200 201 2.174639 TGTCACTGAACAGGAATGGGTT 59.825 45.455 6.76 0.00 0.00 4.11
201 202 3.222603 GTCACTGAACAGGAATGGGTTT 58.777 45.455 6.76 0.00 0.00 3.27
202 203 4.141367 TGTCACTGAACAGGAATGGGTTTA 60.141 41.667 6.76 0.00 0.00 2.01
203 204 4.455877 GTCACTGAACAGGAATGGGTTTAG 59.544 45.833 6.76 0.00 36.86 1.85
204 205 4.104102 TCACTGAACAGGAATGGGTTTAGT 59.896 41.667 6.76 0.00 42.39 2.24
211 3418 3.941483 CAGGAATGGGTTTAGTAGCACAG 59.059 47.826 0.00 0.00 0.00 3.66
218 3425 5.607477 TGGGTTTAGTAGCACAGTATATGC 58.393 41.667 0.00 0.00 43.74 3.14
233 3440 8.495148 CACAGTATATGCGTGCAATAGATAAAA 58.505 33.333 0.00 0.00 0.00 1.52
234 3441 8.495949 ACAGTATATGCGTGCAATAGATAAAAC 58.504 33.333 0.00 0.00 0.00 2.43
235 3442 8.495148 CAGTATATGCGTGCAATAGATAAAACA 58.505 33.333 0.00 0.00 0.00 2.83
236 3443 9.051679 AGTATATGCGTGCAATAGATAAAACAA 57.948 29.630 0.00 0.00 0.00 2.83
237 3444 9.825972 GTATATGCGTGCAATAGATAAAACAAT 57.174 29.630 0.00 0.00 0.00 2.71
270 3478 5.779806 ATGTTAACTGTTCTATGCGACAC 57.220 39.130 7.22 0.00 0.00 3.67
282 3490 7.041712 TGTTCTATGCGACACTGATAAACAAAA 60.042 33.333 0.00 0.00 0.00 2.44
316 3524 8.546597 AAAACAAACTGATAAACAAAGCAAGT 57.453 26.923 0.00 0.00 0.00 3.16
320 3528 5.095691 ACTGATAAACAAAGCAAGTGACG 57.904 39.130 0.00 0.00 0.00 4.35
328 3536 1.772063 AAGCAAGTGACGCCGAACAC 61.772 55.000 10.05 10.05 37.30 3.32
342 3550 1.333308 CGAACACTGTTGACATGGCAA 59.667 47.619 10.79 10.79 0.00 4.52
372 3580 3.247886 CAGAGCATTCGTGATCTCCATTG 59.752 47.826 0.00 0.00 31.52 2.82
373 3581 2.547211 GAGCATTCGTGATCTCCATTGG 59.453 50.000 0.00 0.00 0.00 3.16
383 3591 0.871722 TCTCCATTGGTTTTGACGCG 59.128 50.000 3.53 3.53 0.00 6.01
384 3592 0.109781 CTCCATTGGTTTTGACGCGG 60.110 55.000 12.47 0.00 0.00 6.46
385 3593 1.732683 CCATTGGTTTTGACGCGGC 60.733 57.895 12.47 8.67 0.00 6.53
389 3597 3.292159 GGTTTTGACGCGGCCCTT 61.292 61.111 10.82 0.00 0.00 3.95
394 3602 1.022451 TTTGACGCGGCCCTTGATAC 61.022 55.000 10.82 0.00 0.00 2.24
406 3614 5.299279 CGGCCCTTGATACTGTCAAATAATT 59.701 40.000 0.00 0.00 45.74 1.40
410 3618 7.702348 GCCCTTGATACTGTCAAATAATTGTTC 59.298 37.037 0.00 0.00 45.74 3.18
418 3626 7.648142 ACTGTCAAATAATTGTTCGATGTTGT 58.352 30.769 0.00 0.00 37.79 3.32
432 3640 9.393249 TGTTCGATGTTGTTATGAAAAGAAATC 57.607 29.630 0.00 0.00 0.00 2.17
433 3641 8.850452 GTTCGATGTTGTTATGAAAAGAAATCC 58.150 33.333 0.00 0.00 0.00 3.01
436 3644 7.698130 CGATGTTGTTATGAAAAGAAATCCTCC 59.302 37.037 0.00 0.00 0.00 4.30
440 3648 7.843490 TGTTATGAAAAGAAATCCTCCTACG 57.157 36.000 0.00 0.00 0.00 3.51
455 3679 3.700038 CTCCTACGAGGTATCCAAGTTGT 59.300 47.826 1.45 0.00 36.53 3.32
456 3680 4.858850 TCCTACGAGGTATCCAAGTTGTA 58.141 43.478 1.45 0.00 36.53 2.41
462 3686 5.221783 ACGAGGTATCCAAGTTGTAGGTTTT 60.222 40.000 1.45 0.00 0.00 2.43
463 3687 5.350640 CGAGGTATCCAAGTTGTAGGTTTTC 59.649 44.000 1.45 0.00 0.00 2.29
466 3690 2.853705 TCCAAGTTGTAGGTTTTCGGG 58.146 47.619 1.45 0.00 0.00 5.14
470 3694 4.579753 CCAAGTTGTAGGTTTTCGGGTTTA 59.420 41.667 1.45 0.00 0.00 2.01
476 3700 6.865834 TGTAGGTTTTCGGGTTTATACCTA 57.134 37.500 2.17 0.00 44.38 3.08
499 3725 1.321074 AAGGACCCTCTTAGTCGGCG 61.321 60.000 0.00 0.00 34.97 6.46
500 3726 1.751927 GGACCCTCTTAGTCGGCGA 60.752 63.158 4.99 4.99 34.97 5.54
501 3727 1.318158 GGACCCTCTTAGTCGGCGAA 61.318 60.000 12.92 0.00 34.97 4.70
503 3729 0.896940 ACCCTCTTAGTCGGCGAACA 60.897 55.000 12.92 0.00 0.00 3.18
517 3743 1.079405 GAACATTCGCCGTGGAGGA 60.079 57.895 0.00 0.00 45.00 3.71
521 3747 0.250038 CATTCGCCGTGGAGGATGAT 60.250 55.000 5.03 0.00 45.00 2.45
524 3750 1.338107 TCGCCGTGGAGGATGATAAT 58.662 50.000 0.00 0.00 45.00 1.28
526 3752 1.000843 CGCCGTGGAGGATGATAATCA 59.999 52.381 0.00 0.00 45.00 2.57
527 3753 2.354103 CGCCGTGGAGGATGATAATCAT 60.354 50.000 0.00 0.00 45.00 2.45
533 3759 4.153117 GTGGAGGATGATAATCATGAACGC 59.847 45.833 0.00 0.00 37.20 4.84
537 3763 6.348050 GGAGGATGATAATCATGAACGCTTTC 60.348 42.308 0.00 0.00 37.20 2.62
538 3764 6.057533 AGGATGATAATCATGAACGCTTTCA 58.942 36.000 8.20 8.20 45.93 2.69
551 3778 3.206150 ACGCTTTCATGACAGTTTCAGT 58.794 40.909 10.47 1.66 37.77 3.41
554 3781 4.496341 CGCTTTCATGACAGTTTCAGTTGT 60.496 41.667 10.47 0.00 37.77 3.32
557 3784 6.017934 GCTTTCATGACAGTTTCAGTTGTAGA 60.018 38.462 10.47 0.00 37.77 2.59
559 3786 6.161855 TCATGACAGTTTCAGTTGTAGAGT 57.838 37.500 0.00 0.00 37.77 3.24
583 3810 6.590234 TGACAGTTTCTTCAGACTAGCATA 57.410 37.500 0.00 0.00 0.00 3.14
598 3825 5.207110 CTAGCATAGTAGCAATCTGTGGT 57.793 43.478 8.56 8.56 41.93 4.16
599 3826 6.332735 CTAGCATAGTAGCAATCTGTGGTA 57.667 41.667 9.53 9.53 39.22 3.25
600 3827 5.207110 AGCATAGTAGCAATCTGTGGTAG 57.793 43.478 3.47 0.00 40.82 3.18
601 3828 4.895889 AGCATAGTAGCAATCTGTGGTAGA 59.104 41.667 3.47 0.00 40.82 2.59
602 3829 5.010516 AGCATAGTAGCAATCTGTGGTAGAG 59.989 44.000 3.47 0.00 40.82 2.43
603 3830 5.010112 GCATAGTAGCAATCTGTGGTAGAGA 59.990 44.000 0.00 0.00 40.82 3.10
604 3831 4.993029 AGTAGCAATCTGTGGTAGAGAC 57.007 45.455 0.00 0.00 40.82 3.36
605 3832 4.605183 AGTAGCAATCTGTGGTAGAGACT 58.395 43.478 0.00 0.00 40.82 3.24
610 3837 4.884744 GCAATCTGTGGTAGAGACTAGAGA 59.115 45.833 0.00 0.00 40.15 3.10
617 3844 3.205507 TGGTAGAGACTAGAGAGGGCAAT 59.794 47.826 0.00 0.00 0.00 3.56
620 3847 5.834204 GGTAGAGACTAGAGAGGGCAATTTA 59.166 44.000 0.00 0.00 0.00 1.40
633 3860 5.868454 AGGGCAATTTATTGAAAAACTGCT 58.132 33.333 6.64 0.00 40.14 4.24
642 3869 1.202245 TGAAAAACTGCTGGTTGCGAC 60.202 47.619 0.00 0.00 46.63 5.19
643 3870 1.065551 GAAAAACTGCTGGTTGCGACT 59.934 47.619 3.59 0.00 46.63 4.18
657 3896 2.661566 CGACTGTGTTCGCTGGCAG 61.662 63.158 10.94 10.94 35.31 4.85
689 3928 2.410646 GCGAACGTTGGTTAGTTAGCAC 60.411 50.000 5.00 0.00 44.49 4.40
712 3961 9.829637 GCACTAAAAGAAAAATCTTTACGTTTG 57.170 29.630 0.00 1.02 38.82 2.93
746 4001 1.583477 GCTTCTTCTGGGCACTTGC 59.417 57.895 0.00 0.00 41.14 4.01
793 4048 3.345808 GACGCGCCAAGCTCAACA 61.346 61.111 5.73 0.00 45.59 3.33
887 4146 2.485795 GCACGGACCAAAAGCCACA 61.486 57.895 0.00 0.00 0.00 4.17
948 4207 2.009774 CCGTCCACATCCAAAAGCTAG 58.990 52.381 0.00 0.00 0.00 3.42
949 4208 1.398390 CGTCCACATCCAAAAGCTAGC 59.602 52.381 6.62 6.62 0.00 3.42
950 4209 1.398390 GTCCACATCCAAAAGCTAGCG 59.602 52.381 9.55 0.00 0.00 4.26
951 4210 1.003118 TCCACATCCAAAAGCTAGCGT 59.997 47.619 9.55 2.32 0.00 5.07
987 4465 1.400246 GCGCGCGCATATATACACGA 61.400 55.000 46.11 0.00 41.49 4.35
988 4466 0.979098 CGCGCGCATATATACACGAA 59.021 50.000 32.61 0.00 0.00 3.85
994 4472 2.090041 CGCATATATACACGAACACGGC 59.910 50.000 0.00 0.00 0.00 5.68
1056 4536 4.312052 GGTCTTGGCATAACCGCA 57.688 55.556 3.37 0.00 43.94 5.69
1057 4537 2.562125 GGTCTTGGCATAACCGCAA 58.438 52.632 3.37 0.00 43.94 4.85
1058 4538 0.451783 GGTCTTGGCATAACCGCAAG 59.548 55.000 3.37 0.00 43.94 4.01
1061 4541 1.643868 CTTGGCATAACCGCAAGCGA 61.644 55.000 16.97 0.00 43.94 4.93
1063 4543 2.023320 GCATAACCGCAAGCGAGC 59.977 61.111 16.97 7.87 42.83 5.03
1372 4868 2.027625 CAACCGCGTGAACTCCTCC 61.028 63.158 4.92 0.00 0.00 4.30
1682 5711 0.394565 GGCCTTCCACATCGAGCTAT 59.605 55.000 0.00 0.00 0.00 2.97
1721 5758 1.595489 GCGGCTGTGCTAAATCAATCG 60.595 52.381 0.00 0.00 0.00 3.34
1725 6071 3.119849 GGCTGTGCTAAATCAATCGTGTT 60.120 43.478 0.00 0.00 0.00 3.32
1752 6118 2.358615 CTGTGCAGGGCGTTGCTA 60.359 61.111 12.79 3.10 44.38 3.49
1865 6240 0.666374 ACACAGGCTACGTTTTTGGC 59.334 50.000 0.00 0.00 0.00 4.52
1878 6253 3.507786 GTTTTTGGCTCGTTTGTCAACT 58.492 40.909 0.00 0.00 0.00 3.16
1879 6254 4.664188 GTTTTTGGCTCGTTTGTCAACTA 58.336 39.130 0.00 0.00 0.00 2.24
1880 6255 3.955771 TTTGGCTCGTTTGTCAACTAC 57.044 42.857 0.00 0.00 0.00 2.73
1881 6256 2.902705 TGGCTCGTTTGTCAACTACT 57.097 45.000 0.00 0.00 0.00 2.57
1882 6257 2.750948 TGGCTCGTTTGTCAACTACTC 58.249 47.619 0.00 0.00 0.00 2.59
1883 6258 2.067013 GGCTCGTTTGTCAACTACTCC 58.933 52.381 0.00 0.00 0.00 3.85
1884 6259 2.067013 GCTCGTTTGTCAACTACTCCC 58.933 52.381 0.00 0.00 0.00 4.30
1885 6260 2.288886 GCTCGTTTGTCAACTACTCCCT 60.289 50.000 0.00 0.00 0.00 4.20
1886 6261 3.576648 CTCGTTTGTCAACTACTCCCTC 58.423 50.000 0.00 0.00 0.00 4.30
1887 6262 2.298163 TCGTTTGTCAACTACTCCCTCC 59.702 50.000 0.00 0.00 0.00 4.30
1888 6263 2.685100 GTTTGTCAACTACTCCCTCCG 58.315 52.381 0.00 0.00 0.00 4.63
1889 6264 2.005370 TTGTCAACTACTCCCTCCGT 57.995 50.000 0.00 0.00 0.00 4.69
1890 6265 2.005370 TGTCAACTACTCCCTCCGTT 57.995 50.000 0.00 0.00 0.00 4.44
1891 6266 1.891150 TGTCAACTACTCCCTCCGTTC 59.109 52.381 0.00 0.00 0.00 3.95
1892 6267 1.135460 GTCAACTACTCCCTCCGTTCG 60.135 57.143 0.00 0.00 0.00 3.95
1893 6268 0.172803 CAACTACTCCCTCCGTTCGG 59.827 60.000 4.74 4.74 0.00 4.30
1894 6269 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
1895 6270 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
1896 6271 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
1897 6272 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
1898 6273 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1899 6274 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1900 6275 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1901 6276 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
1902 6277 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
1903 6278 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
1904 6279 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1905 6280 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
1906 6281 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
1907 6282 1.266211 CGTTCGGAATTACTTGTCGCG 60.266 52.381 0.00 0.00 0.00 5.87
1908 6283 1.060122 GTTCGGAATTACTTGTCGCGG 59.940 52.381 6.13 0.00 0.00 6.46
1909 6284 0.527113 TCGGAATTACTTGTCGCGGA 59.473 50.000 6.13 0.00 0.00 5.54
1910 6285 1.067706 TCGGAATTACTTGTCGCGGAA 60.068 47.619 6.13 0.00 0.00 4.30
1911 6286 1.727880 CGGAATTACTTGTCGCGGAAA 59.272 47.619 6.13 0.00 0.00 3.13
1912 6287 2.350498 CGGAATTACTTGTCGCGGAAAT 59.650 45.455 6.13 0.00 0.00 2.17
1913 6288 3.552699 CGGAATTACTTGTCGCGGAAATA 59.447 43.478 6.13 0.00 0.00 1.40
1914 6289 4.317839 CGGAATTACTTGTCGCGGAAATAG 60.318 45.833 6.13 0.00 0.00 1.73
1915 6290 4.807304 GGAATTACTTGTCGCGGAAATAGA 59.193 41.667 6.13 0.00 0.00 1.98
1916 6291 5.465724 GGAATTACTTGTCGCGGAAATAGAT 59.534 40.000 6.13 0.00 0.00 1.98
1917 6292 5.907197 ATTACTTGTCGCGGAAATAGATG 57.093 39.130 6.13 0.00 0.00 2.90
1918 6293 3.247006 ACTTGTCGCGGAAATAGATGT 57.753 42.857 6.13 0.00 0.00 3.06
1919 6294 4.380841 ACTTGTCGCGGAAATAGATGTA 57.619 40.909 6.13 0.00 0.00 2.29
1920 6295 4.945246 ACTTGTCGCGGAAATAGATGTAT 58.055 39.130 6.13 0.00 0.00 2.29
1921 6296 4.982916 ACTTGTCGCGGAAATAGATGTATC 59.017 41.667 6.13 0.00 0.00 2.24
1922 6297 4.848562 TGTCGCGGAAATAGATGTATCT 57.151 40.909 6.13 0.00 40.86 1.98
1923 6298 5.952526 TGTCGCGGAAATAGATGTATCTA 57.047 39.130 6.13 4.22 43.00 1.98
1924 6299 6.321848 TGTCGCGGAAATAGATGTATCTAA 57.678 37.500 6.13 0.00 42.20 2.10
1925 6300 6.741109 TGTCGCGGAAATAGATGTATCTAAA 58.259 36.000 6.13 0.00 42.20 1.85
1926 6301 6.639686 TGTCGCGGAAATAGATGTATCTAAAC 59.360 38.462 6.13 0.00 42.20 2.01
1927 6302 5.854866 TCGCGGAAATAGATGTATCTAAACG 59.145 40.000 6.13 8.75 42.20 3.60
1928 6303 5.628193 CGCGGAAATAGATGTATCTAAACGT 59.372 40.000 0.00 0.00 42.20 3.99
1929 6304 6.798476 CGCGGAAATAGATGTATCTAAACGTA 59.202 38.462 0.00 0.00 42.20 3.57
1930 6305 7.484007 CGCGGAAATAGATGTATCTAAACGTAT 59.516 37.037 0.00 0.00 42.20 3.06
1931 6306 9.136952 GCGGAAATAGATGTATCTAAACGTATT 57.863 33.333 5.75 0.00 42.20 1.89
1959 6334 8.642935 AGATCTAGATACATCCATTTTCGAGA 57.357 34.615 4.89 0.00 0.00 4.04
1960 6335 8.519526 AGATCTAGATACATCCATTTTCGAGAC 58.480 37.037 4.89 0.00 0.00 3.36
1961 6336 7.582667 TCTAGATACATCCATTTTCGAGACA 57.417 36.000 0.00 0.00 0.00 3.41
1962 6337 8.007405 TCTAGATACATCCATTTTCGAGACAA 57.993 34.615 0.00 0.00 0.00 3.18
1963 6338 8.138074 TCTAGATACATCCATTTTCGAGACAAG 58.862 37.037 0.00 0.00 0.00 3.16
1964 6339 6.644347 AGATACATCCATTTTCGAGACAAGT 58.356 36.000 0.00 0.00 0.00 3.16
1965 6340 7.782049 AGATACATCCATTTTCGAGACAAGTA 58.218 34.615 0.00 0.00 0.00 2.24
1966 6341 8.258007 AGATACATCCATTTTCGAGACAAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
1967 6342 8.964476 ATACATCCATTTTCGAGACAAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
1968 6343 7.687941 ACATCCATTTTCGAGACAAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
1969 6344 7.752695 ACATCCATTTTCGAGACAAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
1970 6345 6.737254 TCCATTTTCGAGACAAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
1971 6346 5.350365 TCCATTTTCGAGACAAGTAATTCCG 59.650 40.000 0.00 0.00 0.00 4.30
1972 6347 5.350365 CCATTTTCGAGACAAGTAATTCCGA 59.650 40.000 0.00 0.00 0.00 4.55
1973 6348 6.128391 CCATTTTCGAGACAAGTAATTCCGAA 60.128 38.462 0.00 0.00 33.57 4.30
1974 6349 5.834239 TTTCGAGACAAGTAATTCCGAAC 57.166 39.130 0.00 0.00 34.86 3.95
1975 6350 3.495193 TCGAGACAAGTAATTCCGAACG 58.505 45.455 0.00 0.00 0.00 3.95
1976 6351 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
1977 6352 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
1978 6353 3.582780 AGACAAGTAATTCCGAACGGAC 58.417 45.455 15.63 5.16 45.11 4.79
1979 6354 2.331194 ACAAGTAATTCCGAACGGACG 58.669 47.619 15.63 1.96 45.11 4.79
2052 6490 4.148825 GCGATGGAGCTCCCGTGT 62.149 66.667 29.95 13.22 37.93 4.49
2053 6491 2.782222 GCGATGGAGCTCCCGTGTA 61.782 63.158 29.95 11.51 37.93 2.90
2079 6517 2.357009 CGTGTAGTATGTTCGGTAGGCT 59.643 50.000 0.00 0.00 0.00 4.58
2081 6519 2.954318 TGTAGTATGTTCGGTAGGCTCC 59.046 50.000 0.00 0.00 0.00 4.70
2083 6521 2.679082 AGTATGTTCGGTAGGCTCCAT 58.321 47.619 0.00 0.00 0.00 3.41
2084 6522 2.628657 AGTATGTTCGGTAGGCTCCATC 59.371 50.000 0.00 0.00 0.00 3.51
2091 6529 1.686587 CGGTAGGCTCCATCATGTGTA 59.313 52.381 0.00 0.00 0.00 2.90
2122 6568 6.471976 TGTTCAGAAGTTCAATCTCAATCG 57.528 37.500 5.50 0.00 0.00 3.34
2130 6576 6.712241 AGTTCAATCTCAATCGTGTAGTTG 57.288 37.500 0.00 0.00 0.00 3.16
2140 6586 2.040939 TCGTGTAGTTGTCCCAGGAAA 58.959 47.619 0.00 0.00 0.00 3.13
2202 6649 0.696501 GGGGGCTCAAAACAGGTAGA 59.303 55.000 0.00 0.00 0.00 2.59
2245 6713 5.124457 TGGTTCACCTAATACGTGAGAGTAC 59.876 44.000 0.00 0.00 41.10 2.73
2246 6714 5.124457 GGTTCACCTAATACGTGAGAGTACA 59.876 44.000 0.00 0.00 41.10 2.90
2247 6715 5.808042 TCACCTAATACGTGAGAGTACAC 57.192 43.478 0.00 0.00 35.35 2.90
2335 6804 3.759086 TCATGCGAGAGTATCCATAGGAC 59.241 47.826 0.00 0.00 32.98 3.85
2353 6823 0.460284 ACGAACATCGCTGTCCCATC 60.460 55.000 0.00 0.00 45.12 3.51
2356 6826 0.179100 AACATCGCTGTCCCATCTCG 60.179 55.000 0.00 0.00 33.36 4.04
2363 6833 0.803768 CTGTCCCATCTCGACAAGCG 60.804 60.000 0.00 0.00 39.66 4.68
2367 6837 2.456119 CCATCTCGACAAGCGCCAC 61.456 63.158 2.29 0.00 40.61 5.01
2368 6838 1.737735 CATCTCGACAAGCGCCACA 60.738 57.895 2.29 0.00 40.61 4.17
2432 8447 1.302832 CCAGCCACCAAGTCTGTCC 60.303 63.158 0.00 0.00 0.00 4.02
2489 8504 0.588252 CCAGTTTGTTCGAGTGCTGG 59.412 55.000 8.44 8.44 37.71 4.85
2566 8717 0.603707 TCGCCTGGCAGAAGAAGTTG 60.604 55.000 20.29 0.00 0.00 3.16
2592 8743 7.239166 AGTCATATGCATTAGAGAACAAACG 57.761 36.000 3.54 0.00 0.00 3.60
2622 8802 4.211794 TCGGAAAGACAAATTTCGGTACAC 59.788 41.667 0.00 0.00 39.59 2.90
2627 8807 6.385649 AAGACAAATTTCGGTACACATTGT 57.614 33.333 0.00 0.00 32.68 2.71
2637 8817 5.407502 TCGGTACACATTGTTATCTCACAG 58.592 41.667 0.00 0.00 0.00 3.66
2744 8926 3.433274 ACACATTCTGATGCTAACACACG 59.567 43.478 0.00 0.00 36.72 4.49
2784 8967 9.860898 GCATACAATTTTTAAGAGAGACCATTT 57.139 29.630 0.00 0.00 0.00 2.32
2811 8994 4.910195 ACAAGAAGAGGCACATCATGTAA 58.090 39.130 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.040504 GCCCACTTAAAAATGAAGGGGTATAG 59.959 42.308 3.14 0.00 44.77 1.31
2 3 5.894964 GCCCACTTAAAAATGAAGGGGTATA 59.105 40.000 3.14 0.00 44.77 1.47
3 4 4.714802 GCCCACTTAAAAATGAAGGGGTAT 59.285 41.667 3.14 0.00 44.77 2.73
4 5 4.090819 GCCCACTTAAAAATGAAGGGGTA 58.909 43.478 3.14 0.00 44.77 3.69
5 6 2.903784 GCCCACTTAAAAATGAAGGGGT 59.096 45.455 3.14 0.00 44.77 4.95
6 7 3.173151 AGCCCACTTAAAAATGAAGGGG 58.827 45.455 0.00 0.00 45.67 4.79
7 8 4.528206 AGAAGCCCACTTAAAAATGAAGGG 59.472 41.667 0.00 0.00 35.82 3.95
8 9 5.473039 CAGAAGCCCACTTAAAAATGAAGG 58.527 41.667 0.00 0.00 35.82 3.46
9 10 4.925646 GCAGAAGCCCACTTAAAAATGAAG 59.074 41.667 0.00 0.00 35.82 3.02
10 11 4.558496 CGCAGAAGCCCACTTAAAAATGAA 60.558 41.667 0.00 0.00 35.82 2.57
12 13 3.244976 CGCAGAAGCCCACTTAAAAATG 58.755 45.455 0.00 0.00 35.82 2.32
13 14 2.231235 CCGCAGAAGCCCACTTAAAAAT 59.769 45.455 0.00 0.00 35.82 1.82
14 15 1.611491 CCGCAGAAGCCCACTTAAAAA 59.389 47.619 0.00 0.00 35.82 1.94
15 16 1.243902 CCGCAGAAGCCCACTTAAAA 58.756 50.000 0.00 0.00 35.82 1.52
16 17 0.608035 CCCGCAGAAGCCCACTTAAA 60.608 55.000 0.00 0.00 35.82 1.52
18 19 1.485294 TTCCCGCAGAAGCCCACTTA 61.485 55.000 0.00 0.00 35.82 2.24
19 20 2.754664 CTTCCCGCAGAAGCCCACTT 62.755 60.000 0.88 0.00 45.38 3.16
21 22 2.747855 CTTCCCGCAGAAGCCCAC 60.748 66.667 0.88 0.00 45.38 4.61
34 35 0.325765 ACTAGGGGAGAGGTGCTTCC 60.326 60.000 0.00 0.00 42.17 3.46
36 37 1.079658 AGAACTAGGGGAGAGGTGCTT 59.920 52.381 0.00 0.00 0.00 3.91
38 39 1.116308 GAGAACTAGGGGAGAGGTGC 58.884 60.000 0.00 0.00 0.00 5.01
39 40 2.534042 TGAGAACTAGGGGAGAGGTG 57.466 55.000 0.00 0.00 0.00 4.00
40 41 3.246167 ACAATGAGAACTAGGGGAGAGGT 60.246 47.826 0.00 0.00 0.00 3.85
41 42 3.133721 CACAATGAGAACTAGGGGAGAGG 59.866 52.174 0.00 0.00 0.00 3.69
43 44 4.061131 TCACAATGAGAACTAGGGGAGA 57.939 45.455 0.00 0.00 0.00 3.71
45 46 4.425772 TCTTCACAATGAGAACTAGGGGA 58.574 43.478 0.00 0.00 0.00 4.81
47 48 6.936900 TCTTTTCTTCACAATGAGAACTAGGG 59.063 38.462 0.00 0.00 0.00 3.53
48 49 7.360776 GCTCTTTTCTTCACAATGAGAACTAGG 60.361 40.741 0.00 0.00 30.46 3.02
49 50 7.517321 GCTCTTTTCTTCACAATGAGAACTAG 58.483 38.462 0.00 0.00 30.46 2.57
50 51 6.146184 CGCTCTTTTCTTCACAATGAGAACTA 59.854 38.462 0.00 0.00 30.46 2.24
51 52 5.049818 CGCTCTTTTCTTCACAATGAGAACT 60.050 40.000 0.00 0.00 30.46 3.01
52 53 5.142962 CGCTCTTTTCTTCACAATGAGAAC 58.857 41.667 0.00 0.00 30.46 3.01
53 54 4.214119 CCGCTCTTTTCTTCACAATGAGAA 59.786 41.667 0.00 0.00 30.46 2.87
54 55 3.748048 CCGCTCTTTTCTTCACAATGAGA 59.252 43.478 0.00 0.00 30.46 3.27
55 56 3.499918 ACCGCTCTTTTCTTCACAATGAG 59.500 43.478 0.00 0.00 0.00 2.90
56 57 3.250762 CACCGCTCTTTTCTTCACAATGA 59.749 43.478 0.00 0.00 0.00 2.57
57 58 3.250762 TCACCGCTCTTTTCTTCACAATG 59.749 43.478 0.00 0.00 0.00 2.82
58 59 3.476552 TCACCGCTCTTTTCTTCACAAT 58.523 40.909 0.00 0.00 0.00 2.71
60 61 2.613026 TCACCGCTCTTTTCTTCACA 57.387 45.000 0.00 0.00 0.00 3.58
62 63 6.262273 ACTTATTTTCACCGCTCTTTTCTTCA 59.738 34.615 0.00 0.00 0.00 3.02
63 64 6.669278 ACTTATTTTCACCGCTCTTTTCTTC 58.331 36.000 0.00 0.00 0.00 2.87
64 65 6.635030 ACTTATTTTCACCGCTCTTTTCTT 57.365 33.333 0.00 0.00 0.00 2.52
66 67 7.060748 GCTTAACTTATTTTCACCGCTCTTTTC 59.939 37.037 0.00 0.00 0.00 2.29
67 68 6.861572 GCTTAACTTATTTTCACCGCTCTTTT 59.138 34.615 0.00 0.00 0.00 2.27
68 69 6.379386 GCTTAACTTATTTTCACCGCTCTTT 58.621 36.000 0.00 0.00 0.00 2.52
69 70 5.106277 GGCTTAACTTATTTTCACCGCTCTT 60.106 40.000 0.00 0.00 0.00 2.85
70 71 4.395231 GGCTTAACTTATTTTCACCGCTCT 59.605 41.667 0.00 0.00 0.00 4.09
71 72 4.438336 GGGCTTAACTTATTTTCACCGCTC 60.438 45.833 0.00 0.00 0.00 5.03
72 73 3.442625 GGGCTTAACTTATTTTCACCGCT 59.557 43.478 0.00 0.00 0.00 5.52
73 74 3.428452 GGGGCTTAACTTATTTTCACCGC 60.428 47.826 0.00 0.00 0.00 5.68
74 75 3.129813 GGGGGCTTAACTTATTTTCACCG 59.870 47.826 0.00 0.00 0.00 4.94
76 77 5.163447 GGATGGGGGCTTAACTTATTTTCAC 60.163 44.000 0.00 0.00 0.00 3.18
77 78 4.959839 GGATGGGGGCTTAACTTATTTTCA 59.040 41.667 0.00 0.00 0.00 2.69
78 79 4.344102 GGGATGGGGGCTTAACTTATTTTC 59.656 45.833 0.00 0.00 0.00 2.29
79 80 4.265078 TGGGATGGGGGCTTAACTTATTTT 60.265 41.667 0.00 0.00 0.00 1.82
81 82 2.862597 TGGGATGGGGGCTTAACTTATT 59.137 45.455 0.00 0.00 0.00 1.40
82 83 2.509243 TGGGATGGGGGCTTAACTTAT 58.491 47.619 0.00 0.00 0.00 1.73
83 84 1.988539 TGGGATGGGGGCTTAACTTA 58.011 50.000 0.00 0.00 0.00 2.24
84 85 1.089123 TTGGGATGGGGGCTTAACTT 58.911 50.000 0.00 0.00 0.00 2.66
85 86 1.089123 TTTGGGATGGGGGCTTAACT 58.911 50.000 0.00 0.00 0.00 2.24
87 88 1.435168 AGTTTTGGGATGGGGGCTTAA 59.565 47.619 0.00 0.00 0.00 1.85
88 89 1.089123 AGTTTTGGGATGGGGGCTTA 58.911 50.000 0.00 0.00 0.00 3.09
89 90 1.089123 TAGTTTTGGGATGGGGGCTT 58.911 50.000 0.00 0.00 0.00 4.35
90 91 1.007118 CTTAGTTTTGGGATGGGGGCT 59.993 52.381 0.00 0.00 0.00 5.19
91 92 1.485124 CTTAGTTTTGGGATGGGGGC 58.515 55.000 0.00 0.00 0.00 5.80
94 95 1.478105 GCAGCTTAGTTTTGGGATGGG 59.522 52.381 0.00 0.00 0.00 4.00
95 96 2.450476 AGCAGCTTAGTTTTGGGATGG 58.550 47.619 0.00 0.00 0.00 3.51
97 98 4.844349 TCTAGCAGCTTAGTTTTGGGAT 57.156 40.909 0.00 0.00 0.00 3.85
100 101 3.127721 GGCTTCTAGCAGCTTAGTTTTGG 59.872 47.826 14.16 0.00 44.75 3.28
101 102 4.006319 AGGCTTCTAGCAGCTTAGTTTTG 58.994 43.478 14.16 0.00 44.75 2.44
102 103 4.257731 GAGGCTTCTAGCAGCTTAGTTTT 58.742 43.478 14.16 0.00 44.75 2.43
103 104 3.261897 TGAGGCTTCTAGCAGCTTAGTTT 59.738 43.478 14.16 0.00 44.75 2.66
104 105 2.834549 TGAGGCTTCTAGCAGCTTAGTT 59.165 45.455 14.16 0.00 44.75 2.24
105 106 2.461695 TGAGGCTTCTAGCAGCTTAGT 58.538 47.619 14.16 0.00 44.75 2.24
107 108 3.981071 TTTGAGGCTTCTAGCAGCTTA 57.019 42.857 14.16 0.00 44.75 3.09
108 109 2.867109 TTTGAGGCTTCTAGCAGCTT 57.133 45.000 14.16 6.51 44.75 3.74
109 110 2.304180 TCTTTTGAGGCTTCTAGCAGCT 59.696 45.455 14.16 0.00 44.75 4.24
110 111 2.704572 TCTTTTGAGGCTTCTAGCAGC 58.295 47.619 5.74 5.74 44.75 5.25
112 113 3.935203 CGATTCTTTTGAGGCTTCTAGCA 59.065 43.478 0.00 0.00 44.75 3.49
113 114 3.311048 CCGATTCTTTTGAGGCTTCTAGC 59.689 47.826 0.00 0.00 41.46 3.42
114 115 3.311048 GCCGATTCTTTTGAGGCTTCTAG 59.689 47.826 0.00 0.00 44.06 2.43
115 116 3.270877 GCCGATTCTTTTGAGGCTTCTA 58.729 45.455 0.00 0.00 44.06 2.10
117 118 1.133216 GGCCGATTCTTTTGAGGCTTC 59.867 52.381 4.73 0.00 46.44 3.86
118 119 1.177401 GGCCGATTCTTTTGAGGCTT 58.823 50.000 4.73 0.00 46.44 4.35
119 120 0.681243 GGGCCGATTCTTTTGAGGCT 60.681 55.000 0.00 0.00 46.44 4.58
120 121 0.681243 AGGGCCGATTCTTTTGAGGC 60.681 55.000 0.00 0.00 46.51 4.70
121 122 1.839424 AAGGGCCGATTCTTTTGAGG 58.161 50.000 0.00 0.00 0.00 3.86
122 123 3.873910 TCTAAGGGCCGATTCTTTTGAG 58.126 45.455 0.00 0.00 0.00 3.02
123 124 3.992943 TCTAAGGGCCGATTCTTTTGA 57.007 42.857 0.00 0.00 0.00 2.69
124 125 5.582689 AATTCTAAGGGCCGATTCTTTTG 57.417 39.130 0.00 0.00 0.00 2.44
126 127 5.261216 TGAAATTCTAAGGGCCGATTCTTT 58.739 37.500 0.00 0.00 0.00 2.52
127 128 4.855340 TGAAATTCTAAGGGCCGATTCTT 58.145 39.130 0.00 0.00 0.00 2.52
128 129 4.503714 TGAAATTCTAAGGGCCGATTCT 57.496 40.909 0.00 0.00 0.00 2.40
129 130 4.022849 CCATGAAATTCTAAGGGCCGATTC 60.023 45.833 0.00 0.00 0.00 2.52
130 131 3.891366 CCATGAAATTCTAAGGGCCGATT 59.109 43.478 0.00 0.00 0.00 3.34
131 132 3.117512 ACCATGAAATTCTAAGGGCCGAT 60.118 43.478 0.00 0.00 0.00 4.18
132 133 2.241176 ACCATGAAATTCTAAGGGCCGA 59.759 45.455 0.00 0.00 0.00 5.54
133 134 2.654863 ACCATGAAATTCTAAGGGCCG 58.345 47.619 0.00 0.00 0.00 6.13
134 135 6.538945 TTTTACCATGAAATTCTAAGGGCC 57.461 37.500 0.00 0.00 0.00 5.80
135 136 9.448438 AAAATTTTACCATGAAATTCTAAGGGC 57.552 29.630 0.37 0.00 36.09 5.19
140 141 9.632807 CCGTGAAAATTTTACCATGAAATTCTA 57.367 29.630 2.75 0.00 36.09 2.10
141 142 7.117667 GCCGTGAAAATTTTACCATGAAATTCT 59.882 33.333 2.75 0.00 36.09 2.40
142 143 7.117667 AGCCGTGAAAATTTTACCATGAAATTC 59.882 33.333 2.75 0.00 36.09 2.17
143 144 6.934083 AGCCGTGAAAATTTTACCATGAAATT 59.066 30.769 2.75 0.00 38.09 1.82
144 145 6.463360 AGCCGTGAAAATTTTACCATGAAAT 58.537 32.000 2.75 0.00 0.00 2.17
145 146 5.848406 AGCCGTGAAAATTTTACCATGAAA 58.152 33.333 2.75 0.00 0.00 2.69
146 147 5.461032 AGCCGTGAAAATTTTACCATGAA 57.539 34.783 2.75 0.00 0.00 2.57
147 148 5.708230 ACTAGCCGTGAAAATTTTACCATGA 59.292 36.000 2.75 0.00 0.00 3.07
149 150 6.183360 GCTACTAGCCGTGAAAATTTTACCAT 60.183 38.462 2.75 0.00 34.48 3.55
150 151 5.122711 GCTACTAGCCGTGAAAATTTTACCA 59.877 40.000 2.75 0.00 34.48 3.25
151 152 5.122711 TGCTACTAGCCGTGAAAATTTTACC 59.877 40.000 2.75 0.00 41.51 2.85
152 153 6.173191 TGCTACTAGCCGTGAAAATTTTAC 57.827 37.500 2.75 2.49 41.51 2.01
153 154 6.348704 GGTTGCTACTAGCCGTGAAAATTTTA 60.349 38.462 2.75 0.00 41.51 1.52
154 155 5.458015 GTTGCTACTAGCCGTGAAAATTTT 58.542 37.500 2.28 2.28 41.51 1.82
156 157 3.439129 GGTTGCTACTAGCCGTGAAAATT 59.561 43.478 5.58 0.00 41.51 1.82
157 158 3.007635 GGTTGCTACTAGCCGTGAAAAT 58.992 45.455 5.58 0.00 41.51 1.82
158 159 2.038033 AGGTTGCTACTAGCCGTGAAAA 59.962 45.455 5.58 0.00 41.51 2.29
159 160 1.621814 AGGTTGCTACTAGCCGTGAAA 59.378 47.619 5.58 0.00 41.51 2.69
160 161 1.067142 CAGGTTGCTACTAGCCGTGAA 60.067 52.381 5.58 0.00 41.51 3.18
163 164 0.531200 GACAGGTTGCTACTAGCCGT 59.469 55.000 5.58 0.00 41.51 5.68
164 165 0.530744 TGACAGGTTGCTACTAGCCG 59.469 55.000 5.58 0.00 41.51 5.52
165 166 1.550976 AGTGACAGGTTGCTACTAGCC 59.449 52.381 5.58 0.00 41.51 3.93
166 167 2.231478 TCAGTGACAGGTTGCTACTAGC 59.769 50.000 0.61 0.61 42.82 3.42
168 169 3.639561 TGTTCAGTGACAGGTTGCTACTA 59.360 43.478 0.00 0.00 0.00 1.82
169 170 2.434336 TGTTCAGTGACAGGTTGCTACT 59.566 45.455 0.00 0.00 0.00 2.57
171 172 3.111853 CTGTTCAGTGACAGGTTGCTA 57.888 47.619 12.34 0.00 42.58 3.49
172 173 1.959042 CTGTTCAGTGACAGGTTGCT 58.041 50.000 12.34 0.00 42.58 3.91
178 179 2.224621 ACCCATTCCTGTTCAGTGACAG 60.225 50.000 12.93 12.93 45.19 3.51
179 180 1.774254 ACCCATTCCTGTTCAGTGACA 59.226 47.619 0.00 0.00 0.00 3.58
181 182 3.593442 AAACCCATTCCTGTTCAGTGA 57.407 42.857 0.00 0.00 0.00 3.41
182 183 4.398319 ACTAAACCCATTCCTGTTCAGTG 58.602 43.478 0.00 0.00 0.00 3.66
183 184 4.724279 ACTAAACCCATTCCTGTTCAGT 57.276 40.909 0.00 0.00 0.00 3.41
184 185 4.636206 GCTACTAAACCCATTCCTGTTCAG 59.364 45.833 0.00 0.00 0.00 3.02
185 186 4.042311 TGCTACTAAACCCATTCCTGTTCA 59.958 41.667 0.00 0.00 0.00 3.18
186 187 4.395231 GTGCTACTAAACCCATTCCTGTTC 59.605 45.833 0.00 0.00 0.00 3.18
187 188 4.202524 TGTGCTACTAAACCCATTCCTGTT 60.203 41.667 0.00 0.00 0.00 3.16
190 191 3.587506 ACTGTGCTACTAAACCCATTCCT 59.412 43.478 0.00 0.00 0.00 3.36
191 192 3.951663 ACTGTGCTACTAAACCCATTCC 58.048 45.455 0.00 0.00 0.00 3.01
192 193 7.095187 GCATATACTGTGCTACTAAACCCATTC 60.095 40.741 0.00 0.00 39.45 2.67
193 194 6.710744 GCATATACTGTGCTACTAAACCCATT 59.289 38.462 0.00 0.00 39.45 3.16
195 196 5.607477 GCATATACTGTGCTACTAAACCCA 58.393 41.667 0.00 0.00 39.45 4.51
198 199 6.199043 CACGCATATACTGTGCTACTAAAC 57.801 41.667 0.00 0.00 40.37 2.01
211 3418 9.825972 ATTGTTTTATCTATTGCACGCATATAC 57.174 29.630 0.00 0.00 0.00 1.47
244 3451 7.686938 GTGTCGCATAGAACAGTTAACATTTAC 59.313 37.037 8.61 0.00 0.00 2.01
256 3463 5.474825 TGTTTATCAGTGTCGCATAGAACA 58.525 37.500 0.00 0.00 0.00 3.18
264 3472 6.571588 CAAATGTTTTGTTTATCAGTGTCGC 58.428 36.000 0.00 0.00 0.00 5.19
265 3473 6.417635 AGCAAATGTTTTGTTTATCAGTGTCG 59.582 34.615 2.32 0.00 0.00 4.35
282 3490 9.593134 TGTTTATCAGTTTGTTTTAGCAAATGT 57.407 25.926 0.00 0.00 40.01 2.71
295 3503 6.075415 CGTCACTTGCTTTGTTTATCAGTTTG 60.075 38.462 0.00 0.00 0.00 2.93
298 3506 4.554723 GCGTCACTTGCTTTGTTTATCAGT 60.555 41.667 0.00 0.00 0.00 3.41
299 3507 3.908382 GCGTCACTTGCTTTGTTTATCAG 59.092 43.478 0.00 0.00 0.00 2.90
315 3523 1.149361 TCAACAGTGTTCGGCGTCAC 61.149 55.000 22.23 22.23 35.13 3.67
316 3524 1.142097 TCAACAGTGTTCGGCGTCA 59.858 52.632 5.27 5.04 0.00 4.35
320 3528 0.238289 CCATGTCAACAGTGTTCGGC 59.762 55.000 5.27 4.42 0.00 5.54
328 3536 5.712004 TGTTTATCATTGCCATGTCAACAG 58.288 37.500 0.00 0.00 0.00 3.16
342 3550 6.286758 AGATCACGAATGCTCTGTTTATCAT 58.713 36.000 0.00 0.00 30.02 2.45
372 3580 3.292159 AAGGGCCGCGTCAAAACC 61.292 61.111 4.92 0.00 0.00 3.27
373 3581 1.862602 ATCAAGGGCCGCGTCAAAAC 61.863 55.000 4.92 0.00 0.00 2.43
389 3597 9.161629 ACATCGAACAATTATTTGACAGTATCA 57.838 29.630 4.42 0.00 36.64 2.15
394 3602 8.506140 AACAACATCGAACAATTATTTGACAG 57.494 30.769 4.42 0.00 36.64 3.51
406 3614 9.393249 GATTTCTTTTCATAACAACATCGAACA 57.607 29.630 0.00 0.00 0.00 3.18
410 3618 7.698130 GGAGGATTTCTTTTCATAACAACATCG 59.302 37.037 0.00 0.00 0.00 3.84
433 3641 3.700038 ACAACTTGGATACCTCGTAGGAG 59.300 47.826 5.43 5.43 37.67 3.69
436 3644 4.643784 ACCTACAACTTGGATACCTCGTAG 59.356 45.833 0.00 0.00 0.00 3.51
440 3648 5.350640 CGAAAACCTACAACTTGGATACCTC 59.649 44.000 0.00 0.00 0.00 3.85
482 3706 1.318158 TTCGCCGACTAAGAGGGTCC 61.318 60.000 0.00 0.00 0.00 4.46
499 3725 0.462047 ATCCTCCACGGCGAATGTTC 60.462 55.000 16.62 0.00 0.00 3.18
500 3726 0.744414 CATCCTCCACGGCGAATGTT 60.744 55.000 16.62 0.00 0.00 2.71
501 3727 1.153369 CATCCTCCACGGCGAATGT 60.153 57.895 16.62 0.00 0.00 2.71
503 3729 1.338107 TATCATCCTCCACGGCGAAT 58.662 50.000 16.62 0.00 0.00 3.34
509 3735 4.386954 CGTTCATGATTATCATCCTCCACG 59.613 45.833 4.51 5.90 34.28 4.94
511 3737 4.040829 AGCGTTCATGATTATCATCCTCCA 59.959 41.667 4.51 0.00 34.28 3.86
533 3759 7.225538 ACTCTACAACTGAAACTGTCATGAAAG 59.774 37.037 11.60 11.60 35.07 2.62
537 3763 6.479990 TCAACTCTACAACTGAAACTGTCATG 59.520 38.462 0.00 0.00 35.07 3.07
538 3764 6.480320 GTCAACTCTACAACTGAAACTGTCAT 59.520 38.462 0.00 0.00 35.07 3.06
539 3765 5.810587 GTCAACTCTACAACTGAAACTGTCA 59.189 40.000 0.00 0.00 34.17 3.58
540 3766 5.810587 TGTCAACTCTACAACTGAAACTGTC 59.189 40.000 0.00 0.00 0.00 3.51
541 3767 5.730550 TGTCAACTCTACAACTGAAACTGT 58.269 37.500 0.00 0.00 0.00 3.55
551 3778 6.757010 GTCTGAAGAAACTGTCAACTCTACAA 59.243 38.462 0.00 0.00 0.00 2.41
554 3781 6.716934 AGTCTGAAGAAACTGTCAACTCTA 57.283 37.500 0.00 0.00 0.00 2.43
557 3784 5.163405 TGCTAGTCTGAAGAAACTGTCAACT 60.163 40.000 0.00 0.00 0.00 3.16
559 3786 5.276461 TGCTAGTCTGAAGAAACTGTCAA 57.724 39.130 0.00 0.00 0.00 3.18
583 3810 4.605183 AGTCTCTACCACAGATTGCTACT 58.395 43.478 0.00 0.00 31.13 2.57
585 3812 6.002653 TCTAGTCTCTACCACAGATTGCTA 57.997 41.667 0.00 0.00 31.13 3.49
587 3814 4.884744 TCTCTAGTCTCTACCACAGATTGC 59.115 45.833 0.00 0.00 31.13 3.56
588 3815 5.530915 CCTCTCTAGTCTCTACCACAGATTG 59.469 48.000 0.00 0.00 31.13 2.67
589 3816 5.398581 CCCTCTCTAGTCTCTACCACAGATT 60.399 48.000 0.00 0.00 31.13 2.40
590 3817 4.104102 CCCTCTCTAGTCTCTACCACAGAT 59.896 50.000 0.00 0.00 31.13 2.90
591 3818 3.456644 CCCTCTCTAGTCTCTACCACAGA 59.543 52.174 0.00 0.00 0.00 3.41
592 3819 3.815809 CCCTCTCTAGTCTCTACCACAG 58.184 54.545 0.00 0.00 0.00 3.66
593 3820 2.092321 GCCCTCTCTAGTCTCTACCACA 60.092 54.545 0.00 0.00 0.00 4.17
595 3822 2.206223 TGCCCTCTCTAGTCTCTACCA 58.794 52.381 0.00 0.00 0.00 3.25
596 3823 3.300239 TTGCCCTCTCTAGTCTCTACC 57.700 52.381 0.00 0.00 0.00 3.18
597 3824 5.862678 AAATTGCCCTCTCTAGTCTCTAC 57.137 43.478 0.00 0.00 0.00 2.59
598 3825 7.785028 TCAATAAATTGCCCTCTCTAGTCTCTA 59.215 37.037 0.00 0.00 37.68 2.43
599 3826 6.613271 TCAATAAATTGCCCTCTCTAGTCTCT 59.387 38.462 0.00 0.00 37.68 3.10
600 3827 6.821388 TCAATAAATTGCCCTCTCTAGTCTC 58.179 40.000 0.00 0.00 37.68 3.36
601 3828 6.814954 TCAATAAATTGCCCTCTCTAGTCT 57.185 37.500 0.00 0.00 37.68 3.24
602 3829 7.865706 TTTCAATAAATTGCCCTCTCTAGTC 57.134 36.000 0.00 0.00 37.68 2.59
603 3830 8.523658 GTTTTTCAATAAATTGCCCTCTCTAGT 58.476 33.333 0.00 0.00 37.68 2.57
604 3831 8.743714 AGTTTTTCAATAAATTGCCCTCTCTAG 58.256 33.333 0.00 0.00 37.68 2.43
605 3832 8.522830 CAGTTTTTCAATAAATTGCCCTCTCTA 58.477 33.333 0.00 0.00 37.68 2.43
610 3837 5.702209 CAGCAGTTTTTCAATAAATTGCCCT 59.298 36.000 11.35 0.00 46.04 5.19
617 3844 4.505922 CGCAACCAGCAGTTTTTCAATAAA 59.494 37.500 0.00 0.00 46.13 1.40
620 3847 2.100584 TCGCAACCAGCAGTTTTTCAAT 59.899 40.909 0.00 0.00 46.13 2.57
633 3860 3.712655 CGAACACAGTCGCAACCA 58.287 55.556 0.00 0.00 33.66 3.67
642 3869 0.040958 GAAACTGCCAGCGAACACAG 60.041 55.000 0.00 0.00 36.22 3.66
643 3870 0.463654 AGAAACTGCCAGCGAACACA 60.464 50.000 0.00 0.00 0.00 3.72
657 3896 1.501337 AACGTTCGCCGGGAAGAAAC 61.501 55.000 2.18 0.00 42.24 2.78
689 3928 8.205297 CCGCAAACGTAAAGATTTTTCTTTTAG 58.795 33.333 6.31 4.46 37.50 1.85
730 3979 2.260869 GCGCAAGTGCCCAGAAGAA 61.261 57.895 0.30 0.00 41.68 2.52
731 3980 2.669569 GCGCAAGTGCCCAGAAGA 60.670 61.111 0.30 0.00 41.68 2.87
732 3981 4.093952 CGCGCAAGTGCCCAGAAG 62.094 66.667 8.75 0.00 43.07 2.85
793 4048 1.327690 TATCTTGGCTTCGTCGGGCT 61.328 55.000 10.01 0.00 0.00 5.19
798 4057 1.278238 CGGTGTATCTTGGCTTCGTC 58.722 55.000 0.00 0.00 0.00 4.20
800 4059 1.429148 GGCGGTGTATCTTGGCTTCG 61.429 60.000 0.00 0.00 0.00 3.79
846 4105 4.364409 GCCGTGCGTTCGTCAACC 62.364 66.667 0.00 0.00 0.00 3.77
869 4128 2.335011 GTGGCTTTTGGTCCGTGC 59.665 61.111 0.00 0.00 0.00 5.34
902 4161 7.521423 GCACGAGATAGATAGATGGATATGGAC 60.521 44.444 0.00 0.00 0.00 4.02
972 4233 2.090041 CCGTGTTCGTGTATATATGCGC 59.910 50.000 0.00 0.00 35.01 6.09
987 4465 3.049674 CACATCGCCTGCCGTGTT 61.050 61.111 0.00 0.00 38.35 3.32
1355 4851 2.342648 GGAGGAGTTCACGCGGTT 59.657 61.111 12.47 0.00 0.00 4.44
1360 4856 0.038159 GTGTCAGGGAGGAGTTCACG 60.038 60.000 0.00 0.00 33.09 4.35
1361 4857 1.048601 TGTGTCAGGGAGGAGTTCAC 58.951 55.000 0.00 0.00 0.00 3.18
1362 4858 1.048601 GTGTGTCAGGGAGGAGTTCA 58.951 55.000 0.00 0.00 0.00 3.18
1363 4859 0.321996 GGTGTGTCAGGGAGGAGTTC 59.678 60.000 0.00 0.00 0.00 3.01
1364 4860 0.104934 AGGTGTGTCAGGGAGGAGTT 60.105 55.000 0.00 0.00 0.00 3.01
1365 4861 0.104934 AAGGTGTGTCAGGGAGGAGT 60.105 55.000 0.00 0.00 0.00 3.85
1366 4862 1.059913 AAAGGTGTGTCAGGGAGGAG 58.940 55.000 0.00 0.00 0.00 3.69
1682 5711 1.154197 CTCACGTCAGTCGGTAGTGA 58.846 55.000 0.00 0.00 44.69 3.41
1715 5752 4.634004 ACAGAGTCACAAAAACACGATTGA 59.366 37.500 0.00 0.00 0.00 2.57
1717 5754 4.730613 GCACAGAGTCACAAAAACACGATT 60.731 41.667 0.00 0.00 0.00 3.34
1721 5758 3.429085 CTGCACAGAGTCACAAAAACAC 58.571 45.455 0.00 0.00 0.00 3.32
1725 6071 1.679139 CCCTGCACAGAGTCACAAAA 58.321 50.000 0.00 0.00 0.00 2.44
1752 6118 3.062466 TAGTCGCTCACGCTGCCT 61.062 61.111 0.00 0.00 39.84 4.75
1788 6154 1.079405 GACGATGAGAACGGGGCAA 60.079 57.895 0.00 0.00 34.93 4.52
1865 6240 3.576648 GAGGGAGTAGTTGACAAACGAG 58.423 50.000 0.00 0.00 41.45 4.18
1878 6253 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
1879 6254 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
1880 6255 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
1881 6256 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
1882 6257 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
1883 6258 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
1884 6259 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
1885 6260 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
1886 6261 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
1887 6262 1.266211 CGCGACAAGTAATTCCGAACG 60.266 52.381 0.00 0.00 0.00 3.95
1888 6263 1.060122 CCGCGACAAGTAATTCCGAAC 59.940 52.381 8.23 0.00 0.00 3.95
1889 6264 1.067706 TCCGCGACAAGTAATTCCGAA 60.068 47.619 8.23 0.00 0.00 4.30
1890 6265 0.527113 TCCGCGACAAGTAATTCCGA 59.473 50.000 8.23 0.00 0.00 4.55
1891 6266 1.352114 TTCCGCGACAAGTAATTCCG 58.648 50.000 8.23 0.00 0.00 4.30
1892 6267 4.807304 TCTATTTCCGCGACAAGTAATTCC 59.193 41.667 8.23 0.00 0.00 3.01
1893 6268 5.961395 TCTATTTCCGCGACAAGTAATTC 57.039 39.130 8.23 0.00 0.00 2.17
1894 6269 5.815740 ACATCTATTTCCGCGACAAGTAATT 59.184 36.000 8.23 0.00 0.00 1.40
1895 6270 5.357257 ACATCTATTTCCGCGACAAGTAAT 58.643 37.500 8.23 0.00 0.00 1.89
1896 6271 4.751060 ACATCTATTTCCGCGACAAGTAA 58.249 39.130 8.23 0.00 0.00 2.24
1897 6272 4.380841 ACATCTATTTCCGCGACAAGTA 57.619 40.909 8.23 0.00 0.00 2.24
1898 6273 3.247006 ACATCTATTTCCGCGACAAGT 57.753 42.857 8.23 0.00 0.00 3.16
1899 6274 5.223382 AGATACATCTATTTCCGCGACAAG 58.777 41.667 8.23 0.00 34.85 3.16
1900 6275 5.196341 AGATACATCTATTTCCGCGACAA 57.804 39.130 8.23 0.00 34.85 3.18
1901 6276 4.848562 AGATACATCTATTTCCGCGACA 57.151 40.909 8.23 0.00 34.85 4.35
1902 6277 6.183359 CGTTTAGATACATCTATTTCCGCGAC 60.183 42.308 8.23 0.00 39.02 5.19
1903 6278 5.854866 CGTTTAGATACATCTATTTCCGCGA 59.145 40.000 8.23 0.00 39.02 5.87
1904 6279 5.628193 ACGTTTAGATACATCTATTTCCGCG 59.372 40.000 0.00 0.00 39.02 6.46
1905 6280 8.684973 ATACGTTTAGATACATCTATTTCCGC 57.315 34.615 0.00 0.00 39.02 5.54
1933 6308 9.740710 TCTCGAAAATGGATGTATCTAGATCTA 57.259 33.333 8.95 1.69 0.00 1.98
1934 6309 8.519526 GTCTCGAAAATGGATGTATCTAGATCT 58.480 37.037 8.95 0.00 0.00 2.75
1935 6310 8.300286 TGTCTCGAAAATGGATGTATCTAGATC 58.700 37.037 8.95 2.00 0.00 2.75
1936 6311 8.183104 TGTCTCGAAAATGGATGTATCTAGAT 57.817 34.615 10.73 10.73 0.00 1.98
1937 6312 7.582667 TGTCTCGAAAATGGATGTATCTAGA 57.417 36.000 0.00 0.00 0.00 2.43
1938 6313 7.923344 ACTTGTCTCGAAAATGGATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
1939 6314 7.782049 ACTTGTCTCGAAAATGGATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
1940 6315 6.644347 ACTTGTCTCGAAAATGGATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
1941 6316 6.910536 ACTTGTCTCGAAAATGGATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
1942 6317 8.964476 ATTACTTGTCTCGAAAATGGATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
1943 6318 8.786826 AATTACTTGTCTCGAAAATGGATGTA 57.213 30.769 0.00 0.00 0.00 2.29
1944 6319 7.148239 GGAATTACTTGTCTCGAAAATGGATGT 60.148 37.037 0.00 0.00 0.00 3.06
1945 6320 7.189512 GGAATTACTTGTCTCGAAAATGGATG 58.810 38.462 0.00 0.00 0.00 3.51
1946 6321 6.037172 CGGAATTACTTGTCTCGAAAATGGAT 59.963 38.462 0.00 0.00 0.00 3.41
1947 6322 5.350365 CGGAATTACTTGTCTCGAAAATGGA 59.650 40.000 0.00 0.00 0.00 3.41
1948 6323 5.350365 TCGGAATTACTTGTCTCGAAAATGG 59.650 40.000 0.00 0.00 0.00 3.16
1949 6324 6.403333 TCGGAATTACTTGTCTCGAAAATG 57.597 37.500 0.00 0.00 0.00 2.32
1950 6325 6.400727 CGTTCGGAATTACTTGTCTCGAAAAT 60.401 38.462 0.00 0.00 37.00 1.82
1951 6326 5.107760 CGTTCGGAATTACTTGTCTCGAAAA 60.108 40.000 0.00 0.00 37.00 2.29
1952 6327 4.383649 CGTTCGGAATTACTTGTCTCGAAA 59.616 41.667 0.00 0.00 37.00 3.46
1953 6328 3.916172 CGTTCGGAATTACTTGTCTCGAA 59.084 43.478 0.00 0.00 33.66 3.71
1954 6329 3.495193 CGTTCGGAATTACTTGTCTCGA 58.505 45.455 0.00 0.00 0.00 4.04
1955 6330 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
1956 6331 3.611549 GTCCGTTCGGAATTACTTGTCTC 59.388 47.826 15.59 0.00 35.89 3.36
1957 6332 3.582780 GTCCGTTCGGAATTACTTGTCT 58.417 45.455 15.59 0.00 35.89 3.41
1958 6333 2.343544 CGTCCGTTCGGAATTACTTGTC 59.656 50.000 15.59 0.00 35.89 3.18
1959 6334 2.331194 CGTCCGTTCGGAATTACTTGT 58.669 47.619 15.59 0.00 35.89 3.16
1970 6345 1.363744 AGTACTACTCCGTCCGTTCG 58.636 55.000 0.00 0.00 0.00 3.95
1971 6346 3.526534 ACTAGTACTACTCCGTCCGTTC 58.473 50.000 0.00 0.00 0.00 3.95
1972 6347 3.618690 ACTAGTACTACTCCGTCCGTT 57.381 47.619 0.00 0.00 0.00 4.44
1973 6348 3.491792 GCTACTAGTACTACTCCGTCCGT 60.492 52.174 0.00 0.00 0.00 4.69
1974 6349 3.056304 GCTACTAGTACTACTCCGTCCG 58.944 54.545 0.00 0.00 0.00 4.79
1975 6350 3.807071 GTGCTACTAGTACTACTCCGTCC 59.193 52.174 0.00 0.00 0.00 4.79
1976 6351 4.507388 CAGTGCTACTAGTACTACTCCGTC 59.493 50.000 6.51 0.00 39.17 4.79
1977 6352 4.440880 CAGTGCTACTAGTACTACTCCGT 58.559 47.826 6.51 0.00 39.17 4.69
1978 6353 3.808726 CCAGTGCTACTAGTACTACTCCG 59.191 52.174 6.51 0.00 39.17 4.63
1979 6354 3.565063 GCCAGTGCTACTAGTACTACTCC 59.435 52.174 6.51 3.70 39.17 3.85
1980 6355 4.816786 GCCAGTGCTACTAGTACTACTC 57.183 50.000 6.51 0.97 39.17 2.59
2014 6389 4.332543 CGCTACATCTTTATTGGAAGCACA 59.667 41.667 0.00 0.00 31.37 4.57
2052 6490 4.136796 ACCGAACATACTACACGGCTATA 58.863 43.478 0.00 0.00 46.18 1.31
2053 6491 2.954318 ACCGAACATACTACACGGCTAT 59.046 45.455 0.00 0.00 46.18 2.97
2079 6517 5.294734 ACATGCTACATACACATGATGGA 57.705 39.130 0.00 0.00 43.04 3.41
2081 6519 6.480981 TCTGAACATGCTACATACACATGATG 59.519 38.462 0.00 0.00 43.04 3.07
2083 6521 5.976458 TCTGAACATGCTACATACACATGA 58.024 37.500 0.00 0.00 43.04 3.07
2084 6522 6.314648 ACTTCTGAACATGCTACATACACATG 59.685 38.462 0.00 0.00 45.28 3.21
2091 6529 6.883217 AGATTGAACTTCTGAACATGCTACAT 59.117 34.615 0.00 0.00 0.00 2.29
2122 6568 3.139077 CACTTTCCTGGGACAACTACAC 58.861 50.000 0.00 0.00 38.70 2.90
2130 6576 1.071228 ACGTTACCACTTTCCTGGGAC 59.929 52.381 0.00 0.00 35.34 4.46
2180 6626 0.190815 ACCTGTTTTGAGCCCCCATT 59.809 50.000 0.00 0.00 0.00 3.16
2202 6649 6.150976 TGAACCAGATTCTTCGCAATTGTAAT 59.849 34.615 7.40 0.27 38.25 1.89
2272 6740 5.406767 AAACACGAATTTAGCACGTAACA 57.593 34.783 0.00 0.00 38.47 2.41
2273 6741 5.785112 GGTAAACACGAATTTAGCACGTAAC 59.215 40.000 15.53 0.00 40.60 2.50
2353 6823 3.114616 CCTGTGGCGCTTGTCGAG 61.115 66.667 7.64 0.00 41.67 4.04
2367 6837 1.221293 CTTCTGAGGAGGCTGCCTG 59.779 63.158 28.82 11.57 38.73 4.85
2368 6838 1.994507 CCTTCTGAGGAGGCTGCCT 60.995 63.158 23.64 23.64 46.74 4.75
2373 6843 2.570135 CATTTAGCCTTCTGAGGAGGC 58.430 52.381 24.55 24.55 46.74 4.70
2378 6848 2.570135 GCCTCCATTTAGCCTTCTGAG 58.430 52.381 0.00 0.00 0.00 3.35
2432 8447 0.528924 TCACGAACTATGACCCGGTG 59.471 55.000 0.00 0.00 0.00 4.94
2489 8504 3.373565 CCCTGCGGTTTCAAGCCC 61.374 66.667 0.00 0.00 0.00 5.19
2532 8683 0.034896 GGCGAAGTTCAGAAGGACCA 59.965 55.000 3.32 0.00 0.00 4.02
2566 8717 7.848051 CGTTTGTTCTCTAATGCATATGACTTC 59.152 37.037 6.97 0.00 0.00 3.01
2592 8743 7.753580 ACCGAAATTTGTCTTTCCGAATAATTC 59.246 33.333 0.00 0.00 32.60 2.17
2622 8802 7.194607 AGTGTTGTTCTGTGAGATAACAATG 57.805 36.000 0.00 0.00 42.97 2.82
2627 8807 9.639601 CATTACTAGTGTTGTTCTGTGAGATAA 57.360 33.333 5.39 0.00 0.00 1.75
2637 8817 5.106673 GCTGGGAACATTACTAGTGTTGTTC 60.107 44.000 27.85 27.85 44.48 3.18
2657 8838 2.226437 AGCGTGATTGTAACTTTGCTGG 59.774 45.455 0.00 0.00 0.00 4.85
2754 8937 9.508567 GGTCTCTCTTAAAAATTGTATGCAATC 57.491 33.333 9.60 0.00 43.89 2.67
2784 8967 2.857186 TGTGCCTCTTCTTGTATGCA 57.143 45.000 0.00 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.