Multiple sequence alignment - TraesCS5B01G393800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G393800 chr5B 100.000 5027 0 0 1 5027 571712367 571707341 0.000000e+00 9284.0
1 TraesCS5B01G393800 chr5B 83.944 1283 148 28 2946 4181 571718450 571717179 0.000000e+00 1175.0
2 TraesCS5B01G393800 chr5B 82.570 1222 194 15 2822 4036 571639185 571637976 0.000000e+00 1059.0
3 TraesCS5B01G393800 chr5B 82.583 1022 130 27 1833 2847 571640175 571639195 0.000000e+00 857.0
4 TraesCS5B01G393800 chr5B 80.769 1092 178 26 2961 4041 571555694 571554624 0.000000e+00 824.0
5 TraesCS5B01G393800 chr5B 80.346 809 117 31 997 1776 571640996 571640201 4.360000e-160 575.0
6 TraesCS5B01G393800 chr5B 83.083 532 66 15 997 1520 571720237 571719722 3.550000e-126 462.0
7 TraesCS5B01G393800 chr5B 75.703 996 172 48 1666 2619 571556876 571555909 7.730000e-118 435.0
8 TraesCS5B01G393800 chr5B 81.612 484 78 10 2157 2635 571719125 571718648 1.700000e-104 390.0
9 TraesCS5B01G393800 chr5B 76.923 390 68 15 1664 2050 571719564 571719194 8.530000e-48 202.0
10 TraesCS5B01G393800 chr5A 90.292 1988 96 32 866 2834 585067341 585069250 0.000000e+00 2512.0
11 TraesCS5B01G393800 chr5A 92.426 1426 73 13 2816 4233 585069599 585070997 0.000000e+00 2002.0
12 TraesCS5B01G393800 chr5A 86.532 1188 129 18 2958 4133 585020387 585021555 0.000000e+00 1279.0
13 TraesCS5B01G393800 chr5A 82.513 1138 184 10 2896 4027 585077438 585078566 0.000000e+00 985.0
14 TraesCS5B01G393800 chr5A 79.567 1062 144 44 997 2023 585075324 585076347 0.000000e+00 691.0
15 TraesCS5B01G393800 chr5A 86.327 490 67 0 3540 4029 585216110 585216599 7.410000e-148 534.0
16 TraesCS5B01G393800 chr5A 91.392 395 22 3 463 845 585066804 585067198 9.580000e-147 531.0
17 TraesCS5B01G393800 chr5A 83.774 530 66 14 997 1520 585018683 585019198 7.570000e-133 484.0
18 TraesCS5B01G393800 chr5A 76.367 969 184 31 1667 2619 585214394 585215333 3.520000e-131 479.0
19 TraesCS5B01G393800 chr5A 82.724 492 77 6 2961 3447 585215574 585216062 1.000000e-116 431.0
20 TraesCS5B01G393800 chr5A 78.108 370 53 18 1664 2027 585019326 585019673 5.100000e-50 209.0
21 TraesCS5B01G393800 chr5A 72.848 453 94 22 1078 1519 584965687 584966121 1.470000e-25 128.0
22 TraesCS5B01G393800 chr5A 81.457 151 16 7 327 465 585066625 585066775 4.110000e-21 113.0
23 TraesCS5B01G393800 chr5D 92.937 1345 78 11 2896 4235 464619442 464620774 0.000000e+00 1941.0
24 TraesCS5B01G393800 chr5D 82.025 1936 308 31 2108 4027 464658487 464660398 0.000000e+00 1611.0
25 TraesCS5B01G393800 chr5D 92.953 1121 48 9 463 1576 464616868 464617964 0.000000e+00 1604.0
26 TraesCS5B01G393800 chr5D 85.623 1252 148 15 2946 4177 464605249 464606488 0.000000e+00 1286.0
27 TraesCS5B01G393800 chr5D 85.246 732 45 18 2083 2814 464618688 464619356 0.000000e+00 695.0
28 TraesCS5B01G393800 chr5D 83.553 760 85 27 4233 4960 404490775 404491526 0.000000e+00 675.0
29 TraesCS5B01G393800 chr5D 79.469 979 134 46 1080 2026 464641677 464642620 2.550000e-177 632.0
30 TraesCS5B01G393800 chr5D 87.097 496 64 0 3540 4035 464818046 464818541 3.400000e-156 562.0
31 TraesCS5B01G393800 chr5D 82.961 493 74 8 2961 3447 464817502 464817990 2.150000e-118 436.0
32 TraesCS5B01G393800 chr5D 81.973 527 73 16 997 1520 464603474 464603981 1.290000e-115 427.0
33 TraesCS5B01G393800 chr5D 75.282 975 192 38 1666 2619 464816310 464817256 2.160000e-113 420.0
34 TraesCS5B01G393800 chr5D 82.195 483 75 9 2157 2635 464604577 464605052 6.060000e-109 405.0
35 TraesCS5B01G393800 chr5D 95.074 203 10 0 1824 2026 464618484 464618686 2.260000e-83 320.0
36 TraesCS5B01G393800 chr5D 94.681 188 10 0 1614 1801 464617966 464618153 4.920000e-75 292.0
37 TraesCS5B01G393800 chr5D 92.079 202 13 2 265 465 464616641 464616840 1.070000e-71 281.0
38 TraesCS5B01G393800 chr5D 88.571 105 12 0 1664 1768 464604143 464604247 1.470000e-25 128.0
39 TraesCS5B01G393800 chr5D 100.000 42 0 0 2829 2870 464619407 464619448 1.500000e-10 78.7
40 TraesCS5B01G393800 chr2D 87.890 801 81 11 4235 5027 638152215 638151423 0.000000e+00 928.0
41 TraesCS5B01G393800 chr2D 89.451 692 67 5 4339 5027 112553552 112554240 0.000000e+00 869.0
42 TraesCS5B01G393800 chr2A 89.451 692 70 3 4339 5027 4177444 4178135 0.000000e+00 870.0
43 TraesCS5B01G393800 chr6B 86.250 800 100 7 4235 5027 585495462 585494666 0.000000e+00 859.0
44 TraesCS5B01G393800 chr1A 84.691 810 104 18 4235 5027 481507024 481507830 0.000000e+00 791.0
45 TraesCS5B01G393800 chr7D 86.831 691 78 13 4345 5027 568646532 568645847 0.000000e+00 760.0
46 TraesCS5B01G393800 chr4D 85.067 750 91 14 4233 4973 488180819 488180082 0.000000e+00 745.0
47 TraesCS5B01G393800 chr3A 88.276 580 64 4 4451 5027 628308992 628308414 0.000000e+00 691.0
48 TraesCS5B01G393800 chr1B 83.046 755 110 17 4233 4975 288644080 288643332 0.000000e+00 669.0
49 TraesCS5B01G393800 chr7B 81.740 816 110 18 4233 5021 628723740 628724543 0.000000e+00 645.0
50 TraesCS5B01G393800 chr3D 82.603 730 113 9 4237 4959 85837895 85837173 2.550000e-177 632.0
51 TraesCS5B01G393800 chr4A 82.873 181 24 6 4235 4410 595215340 595215518 6.740000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G393800 chr5B 571707341 571712367 5026 True 9284.000000 9284 100.000000 1 5027 1 chr5B.!!$R1 5026
1 TraesCS5B01G393800 chr5B 571637976 571640996 3020 True 830.333333 1059 81.833000 997 4036 3 chr5B.!!$R3 3039
2 TraesCS5B01G393800 chr5B 571554624 571556876 2252 True 629.500000 824 78.236000 1666 4041 2 chr5B.!!$R2 2375
3 TraesCS5B01G393800 chr5B 571717179 571720237 3058 True 557.250000 1175 81.390500 997 4181 4 chr5B.!!$R4 3184
4 TraesCS5B01G393800 chr5A 585066625 585070997 4372 False 1289.500000 2512 88.891750 327 4233 4 chr5A.!!$F3 3906
5 TraesCS5B01G393800 chr5A 585075324 585078566 3242 False 838.000000 985 81.040000 997 4027 2 chr5A.!!$F4 3030
6 TraesCS5B01G393800 chr5A 585018683 585021555 2872 False 657.333333 1279 82.804667 997 4133 3 chr5A.!!$F2 3136
7 TraesCS5B01G393800 chr5A 585214394 585216599 2205 False 481.333333 534 81.806000 1667 4029 3 chr5A.!!$F5 2362
8 TraesCS5B01G393800 chr5D 464658487 464660398 1911 False 1611.000000 1611 82.025000 2108 4027 1 chr5D.!!$F3 1919
9 TraesCS5B01G393800 chr5D 464616641 464620774 4133 False 744.528571 1941 93.281429 265 4235 7 chr5D.!!$F5 3970
10 TraesCS5B01G393800 chr5D 404490775 404491526 751 False 675.000000 675 83.553000 4233 4960 1 chr5D.!!$F1 727
11 TraesCS5B01G393800 chr5D 464641677 464642620 943 False 632.000000 632 79.469000 1080 2026 1 chr5D.!!$F2 946
12 TraesCS5B01G393800 chr5D 464603474 464606488 3014 False 561.500000 1286 84.590500 997 4177 4 chr5D.!!$F4 3180
13 TraesCS5B01G393800 chr5D 464816310 464818541 2231 False 472.666667 562 81.780000 1666 4035 3 chr5D.!!$F6 2369
14 TraesCS5B01G393800 chr2D 638151423 638152215 792 True 928.000000 928 87.890000 4235 5027 1 chr2D.!!$R1 792
15 TraesCS5B01G393800 chr2D 112553552 112554240 688 False 869.000000 869 89.451000 4339 5027 1 chr2D.!!$F1 688
16 TraesCS5B01G393800 chr2A 4177444 4178135 691 False 870.000000 870 89.451000 4339 5027 1 chr2A.!!$F1 688
17 TraesCS5B01G393800 chr6B 585494666 585495462 796 True 859.000000 859 86.250000 4235 5027 1 chr6B.!!$R1 792
18 TraesCS5B01G393800 chr1A 481507024 481507830 806 False 791.000000 791 84.691000 4235 5027 1 chr1A.!!$F1 792
19 TraesCS5B01G393800 chr7D 568645847 568646532 685 True 760.000000 760 86.831000 4345 5027 1 chr7D.!!$R1 682
20 TraesCS5B01G393800 chr4D 488180082 488180819 737 True 745.000000 745 85.067000 4233 4973 1 chr4D.!!$R1 740
21 TraesCS5B01G393800 chr3A 628308414 628308992 578 True 691.000000 691 88.276000 4451 5027 1 chr3A.!!$R1 576
22 TraesCS5B01G393800 chr1B 288643332 288644080 748 True 669.000000 669 83.046000 4233 4975 1 chr1B.!!$R1 742
23 TraesCS5B01G393800 chr7B 628723740 628724543 803 False 645.000000 645 81.740000 4233 5021 1 chr7B.!!$F1 788
24 TraesCS5B01G393800 chr3D 85837173 85837895 722 True 632.000000 632 82.603000 4237 4959 1 chr3D.!!$R1 722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 235 0.111001 CGTTTGCCGAACTACCGTTG 60.111 55.000 0.00 0.00 39.56 4.10 F
335 336 0.166814 GAGCGTTGTCAGCATCAACC 59.833 55.000 11.15 6.26 41.13 3.77 F
1008 1200 1.153349 GTCGGACAAGATGGGGAGC 60.153 63.158 2.62 0.00 0.00 4.70 F
1296 1493 0.248054 CTTGTGTGTGACGTTGGTGC 60.248 55.000 0.00 0.00 0.00 5.01 F
2237 3105 1.594331 GGATCAACGAGGGCAATACC 58.406 55.000 0.00 0.00 37.93 2.73 F
3466 4927 0.729140 GCGTCCCTTGTTTCATTGCG 60.729 55.000 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1221 1413 0.037790 GCGTGAGAGAGGGATATGGC 60.038 60.000 0.00 0.0 0.00 4.40 R
1277 1474 0.248054 GCACCAACGTCACACACAAG 60.248 55.000 0.00 0.0 0.00 3.16 R
1894 2486 0.392461 TTTCATAGCAGCGTCCCCAC 60.392 55.000 0.00 0.0 0.00 4.61 R
2627 3625 2.083774 TGGTCGATGAAAGGTGATTGC 58.916 47.619 0.00 0.0 0.00 3.56 R
3476 4937 0.240145 TGACGTCGCTACAAGTCAGG 59.760 55.000 11.62 0.0 38.52 3.86 R
4553 6151 0.750546 TCAGTGTAGTAGGCGCGGAT 60.751 55.000 8.83 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.813148 ACACCGACAATAGAATATACATGTAGC 59.187 37.037 11.91 1.19 0.00 3.58
27 28 7.812669 CACCGACAATAGAATATACATGTAGCA 59.187 37.037 11.91 2.10 0.00 3.49
28 29 8.364894 ACCGACAATAGAATATACATGTAGCAA 58.635 33.333 11.91 0.00 0.00 3.91
29 30 9.203421 CCGACAATAGAATATACATGTAGCAAA 57.797 33.333 11.91 0.00 0.00 3.68
81 82 4.744795 AGGGACTAAGCTACATGAGTTG 57.255 45.455 0.00 0.00 36.02 3.16
82 83 3.118592 AGGGACTAAGCTACATGAGTTGC 60.119 47.826 0.00 0.00 41.44 4.17
83 84 3.198872 GGACTAAGCTACATGAGTTGCC 58.801 50.000 0.00 0.00 45.74 4.52
84 85 2.860735 GACTAAGCTACATGAGTTGCCG 59.139 50.000 0.00 0.00 45.74 5.69
85 86 2.233922 ACTAAGCTACATGAGTTGCCGT 59.766 45.455 0.00 0.00 45.74 5.68
86 87 2.185004 AAGCTACATGAGTTGCCGTT 57.815 45.000 0.00 0.00 45.74 4.44
87 88 1.442769 AGCTACATGAGTTGCCGTTG 58.557 50.000 0.00 0.00 45.74 4.10
88 89 1.001974 AGCTACATGAGTTGCCGTTGA 59.998 47.619 0.00 0.00 45.74 3.18
89 90 1.804151 GCTACATGAGTTGCCGTTGAA 59.196 47.619 0.00 0.00 40.01 2.69
90 91 2.159653 GCTACATGAGTTGCCGTTGAAG 60.160 50.000 0.00 0.00 40.01 3.02
91 92 1.967319 ACATGAGTTGCCGTTGAAGT 58.033 45.000 0.00 0.00 0.00 3.01
92 93 2.297701 ACATGAGTTGCCGTTGAAGTT 58.702 42.857 0.00 0.00 0.00 2.66
93 94 2.033299 ACATGAGTTGCCGTTGAAGTTG 59.967 45.455 0.00 0.00 0.00 3.16
94 95 1.021202 TGAGTTGCCGTTGAAGTTGG 58.979 50.000 0.00 0.00 0.00 3.77
95 96 1.305201 GAGTTGCCGTTGAAGTTGGA 58.695 50.000 0.00 0.00 0.00 3.53
96 97 1.264288 GAGTTGCCGTTGAAGTTGGAG 59.736 52.381 0.00 0.00 0.00 3.86
97 98 0.317854 GTTGCCGTTGAAGTTGGAGC 60.318 55.000 0.00 0.00 0.00 4.70
98 99 0.749818 TTGCCGTTGAAGTTGGAGCA 60.750 50.000 0.00 0.00 0.00 4.26
99 100 0.537143 TGCCGTTGAAGTTGGAGCAT 60.537 50.000 0.00 0.00 0.00 3.79
100 101 0.598065 GCCGTTGAAGTTGGAGCATT 59.402 50.000 0.00 0.00 0.00 3.56
101 102 1.810151 GCCGTTGAAGTTGGAGCATTA 59.190 47.619 0.00 0.00 0.00 1.90
102 103 2.423538 GCCGTTGAAGTTGGAGCATTAT 59.576 45.455 0.00 0.00 0.00 1.28
103 104 3.119495 GCCGTTGAAGTTGGAGCATTATT 60.119 43.478 0.00 0.00 0.00 1.40
104 105 4.618227 GCCGTTGAAGTTGGAGCATTATTT 60.618 41.667 0.00 0.00 0.00 1.40
105 106 4.858692 CCGTTGAAGTTGGAGCATTATTTG 59.141 41.667 0.00 0.00 0.00 2.32
106 107 4.858692 CGTTGAAGTTGGAGCATTATTTGG 59.141 41.667 0.00 0.00 0.00 3.28
107 108 5.170748 GTTGAAGTTGGAGCATTATTTGGG 58.829 41.667 0.00 0.00 0.00 4.12
108 109 3.768757 TGAAGTTGGAGCATTATTTGGGG 59.231 43.478 0.00 0.00 0.00 4.96
109 110 2.110578 AGTTGGAGCATTATTTGGGGC 58.889 47.619 0.00 0.00 0.00 5.80
110 111 2.110578 GTTGGAGCATTATTTGGGGCT 58.889 47.619 0.00 0.00 39.75 5.19
111 112 3.052944 AGTTGGAGCATTATTTGGGGCTA 60.053 43.478 0.00 0.00 36.59 3.93
112 113 3.678965 TGGAGCATTATTTGGGGCTAA 57.321 42.857 0.00 0.00 36.59 3.09
113 114 3.987745 TGGAGCATTATTTGGGGCTAAA 58.012 40.909 0.00 0.00 36.59 1.85
114 115 4.357325 TGGAGCATTATTTGGGGCTAAAA 58.643 39.130 0.00 0.00 36.59 1.52
115 116 4.780021 TGGAGCATTATTTGGGGCTAAAAA 59.220 37.500 0.00 0.00 36.59 1.94
116 117 5.104982 TGGAGCATTATTTGGGGCTAAAAAG 60.105 40.000 0.00 0.00 36.59 2.27
117 118 5.357742 AGCATTATTTGGGGCTAAAAAGG 57.642 39.130 0.00 0.00 34.25 3.11
118 119 4.164030 AGCATTATTTGGGGCTAAAAAGGG 59.836 41.667 0.00 0.00 34.25 3.95
119 120 4.163268 GCATTATTTGGGGCTAAAAAGGGA 59.837 41.667 0.00 0.00 0.00 4.20
120 121 5.684813 GCATTATTTGGGGCTAAAAAGGGAG 60.685 44.000 0.00 0.00 0.00 4.30
121 122 2.319025 TTTGGGGCTAAAAAGGGAGG 57.681 50.000 0.00 0.00 0.00 4.30
122 123 1.462426 TTGGGGCTAAAAAGGGAGGA 58.538 50.000 0.00 0.00 0.00 3.71
123 124 0.999712 TGGGGCTAAAAAGGGAGGAG 59.000 55.000 0.00 0.00 0.00 3.69
124 125 0.395862 GGGGCTAAAAAGGGAGGAGC 60.396 60.000 0.00 0.00 0.00 4.70
125 126 3.192799 GGCTAAAAAGGGAGGAGCC 57.807 57.895 0.00 0.00 45.48 4.70
134 135 2.046217 GGAGGAGCCCCGTTTGAC 60.046 66.667 0.00 0.00 37.58 3.18
135 136 2.747686 GAGGAGCCCCGTTTGACA 59.252 61.111 0.00 0.00 37.58 3.58
136 137 1.299976 GAGGAGCCCCGTTTGACAT 59.700 57.895 0.00 0.00 37.58 3.06
137 138 1.002134 AGGAGCCCCGTTTGACATG 60.002 57.895 0.00 0.00 37.58 3.21
138 139 1.303317 GGAGCCCCGTTTGACATGT 60.303 57.895 0.00 0.00 0.00 3.21
139 140 1.586154 GGAGCCCCGTTTGACATGTG 61.586 60.000 1.15 0.00 0.00 3.21
140 141 2.200170 GAGCCCCGTTTGACATGTGC 62.200 60.000 1.15 0.00 0.00 4.57
141 142 2.560861 CCCCGTTTGACATGTGCG 59.439 61.111 1.15 2.29 0.00 5.34
142 143 2.560861 CCCGTTTGACATGTGCGG 59.439 61.111 1.15 11.62 41.82 5.69
143 144 2.560861 CCGTTTGACATGTGCGGG 59.439 61.111 1.15 0.00 38.86 6.13
144 145 2.126888 CGTTTGACATGTGCGGGC 60.127 61.111 1.15 0.00 0.00 6.13
145 146 2.616330 CGTTTGACATGTGCGGGCT 61.616 57.895 1.15 0.00 0.00 5.19
146 147 1.659794 GTTTGACATGTGCGGGCTT 59.340 52.632 1.15 0.00 0.00 4.35
147 148 0.387239 GTTTGACATGTGCGGGCTTC 60.387 55.000 1.15 0.00 0.00 3.86
148 149 1.851021 TTTGACATGTGCGGGCTTCG 61.851 55.000 1.15 0.00 42.76 3.79
149 150 2.742372 GACATGTGCGGGCTTCGT 60.742 61.111 1.15 0.00 41.72 3.85
150 151 2.281484 ACATGTGCGGGCTTCGTT 60.281 55.556 0.00 0.00 41.72 3.85
151 152 1.852067 GACATGTGCGGGCTTCGTTT 61.852 55.000 1.15 0.00 41.72 3.60
152 153 1.285641 CATGTGCGGGCTTCGTTTT 59.714 52.632 0.00 0.00 41.72 2.43
153 154 0.519519 CATGTGCGGGCTTCGTTTTA 59.480 50.000 0.00 0.00 41.72 1.52
154 155 0.802494 ATGTGCGGGCTTCGTTTTAG 59.198 50.000 0.00 0.00 41.72 1.85
155 156 1.231958 TGTGCGGGCTTCGTTTTAGG 61.232 55.000 0.00 0.00 41.72 2.69
156 157 1.673009 TGCGGGCTTCGTTTTAGGG 60.673 57.895 0.00 0.00 41.72 3.53
157 158 3.047718 GCGGGCTTCGTTTTAGGGC 62.048 63.158 2.46 0.00 41.72 5.19
158 159 1.376812 CGGGCTTCGTTTTAGGGCT 60.377 57.895 0.00 0.00 0.00 5.19
159 160 0.958876 CGGGCTTCGTTTTAGGGCTT 60.959 55.000 0.00 0.00 0.00 4.35
160 161 1.254026 GGGCTTCGTTTTAGGGCTTT 58.746 50.000 0.00 0.00 0.00 3.51
161 162 1.201647 GGGCTTCGTTTTAGGGCTTTC 59.798 52.381 0.00 0.00 0.00 2.62
162 163 2.160205 GGCTTCGTTTTAGGGCTTTCT 58.840 47.619 0.00 0.00 0.00 2.52
163 164 2.095212 GGCTTCGTTTTAGGGCTTTCTG 60.095 50.000 0.00 0.00 0.00 3.02
164 165 2.668556 GCTTCGTTTTAGGGCTTTCTGC 60.669 50.000 0.00 0.00 41.94 4.26
165 166 2.561478 TCGTTTTAGGGCTTTCTGCT 57.439 45.000 0.00 0.00 42.39 4.24
166 167 3.688694 TCGTTTTAGGGCTTTCTGCTA 57.311 42.857 0.00 0.00 42.39 3.49
167 168 3.596214 TCGTTTTAGGGCTTTCTGCTAG 58.404 45.455 0.00 0.00 42.39 3.42
168 169 3.259876 TCGTTTTAGGGCTTTCTGCTAGA 59.740 43.478 0.00 0.00 42.39 2.43
169 170 4.000988 CGTTTTAGGGCTTTCTGCTAGAA 58.999 43.478 0.00 0.00 42.39 2.10
170 171 4.454504 CGTTTTAGGGCTTTCTGCTAGAAA 59.545 41.667 0.00 9.84 41.51 2.52
171 172 5.617087 CGTTTTAGGGCTTTCTGCTAGAAAC 60.617 44.000 0.00 5.52 39.13 2.78
172 173 2.100605 AGGGCTTTCTGCTAGAAACG 57.899 50.000 0.00 5.87 39.13 3.60
173 174 0.448197 GGGCTTTCTGCTAGAAACGC 59.552 55.000 15.78 15.78 39.13 4.84
174 175 1.443802 GGCTTTCTGCTAGAAACGCT 58.556 50.000 19.31 0.00 39.13 5.07
175 176 1.395262 GGCTTTCTGCTAGAAACGCTC 59.605 52.381 19.31 12.67 39.13 5.03
176 177 1.395262 GCTTTCTGCTAGAAACGCTCC 59.605 52.381 16.27 0.00 39.13 4.70
177 178 2.688507 CTTTCTGCTAGAAACGCTCCA 58.311 47.619 0.00 0.00 39.13 3.86
178 179 2.831685 TTCTGCTAGAAACGCTCCAA 57.168 45.000 0.00 0.00 29.99 3.53
179 180 2.370281 TCTGCTAGAAACGCTCCAAG 57.630 50.000 0.00 0.00 0.00 3.61
180 181 1.066858 TCTGCTAGAAACGCTCCAAGG 60.067 52.381 0.00 0.00 0.00 3.61
181 182 0.685097 TGCTAGAAACGCTCCAAGGT 59.315 50.000 0.00 0.00 0.00 3.50
182 183 1.071699 TGCTAGAAACGCTCCAAGGTT 59.928 47.619 0.00 0.00 0.00 3.50
183 184 1.732809 GCTAGAAACGCTCCAAGGTTC 59.267 52.381 0.00 0.00 35.66 3.62
184 185 1.993370 CTAGAAACGCTCCAAGGTTCG 59.007 52.381 0.00 0.00 40.05 3.95
185 186 0.391597 AGAAACGCTCCAAGGTTCGA 59.608 50.000 9.02 0.00 40.05 3.71
186 187 1.202604 AGAAACGCTCCAAGGTTCGAA 60.203 47.619 0.00 0.00 40.05 3.71
187 188 1.600485 GAAACGCTCCAAGGTTCGAAA 59.400 47.619 0.00 0.00 0.00 3.46
188 189 1.892209 AACGCTCCAAGGTTCGAAAT 58.108 45.000 0.00 0.00 0.00 2.17
189 190 1.156736 ACGCTCCAAGGTTCGAAATG 58.843 50.000 0.00 0.00 0.00 2.32
190 191 0.447801 CGCTCCAAGGTTCGAAATGG 59.552 55.000 16.05 16.05 0.00 3.16
191 192 0.171231 GCTCCAAGGTTCGAAATGGC 59.829 55.000 16.95 6.66 32.87 4.40
192 193 0.811281 CTCCAAGGTTCGAAATGGCC 59.189 55.000 16.95 0.00 32.87 5.36
193 194 0.404040 TCCAAGGTTCGAAATGGCCT 59.596 50.000 16.95 9.52 32.87 5.19
194 195 1.203001 TCCAAGGTTCGAAATGGCCTT 60.203 47.619 16.95 14.20 41.55 4.35
195 196 1.618343 CCAAGGTTCGAAATGGCCTTT 59.382 47.619 13.52 0.00 39.11 3.11
196 197 2.610232 CCAAGGTTCGAAATGGCCTTTG 60.610 50.000 13.52 8.11 39.11 2.77
197 198 1.995376 AGGTTCGAAATGGCCTTTGT 58.005 45.000 3.32 0.00 0.00 2.83
198 199 1.886542 AGGTTCGAAATGGCCTTTGTC 59.113 47.619 3.32 4.12 0.00 3.18
199 200 1.886542 GGTTCGAAATGGCCTTTGTCT 59.113 47.619 3.32 0.00 0.00 3.41
200 201 2.296190 GGTTCGAAATGGCCTTTGTCTT 59.704 45.455 3.32 0.00 0.00 3.01
201 202 3.243737 GGTTCGAAATGGCCTTTGTCTTT 60.244 43.478 3.32 0.00 0.00 2.52
202 203 4.022676 GGTTCGAAATGGCCTTTGTCTTTA 60.023 41.667 3.32 0.00 0.00 1.85
203 204 5.508320 GGTTCGAAATGGCCTTTGTCTTTAA 60.508 40.000 3.32 0.00 0.00 1.52
204 205 5.975693 TCGAAATGGCCTTTGTCTTTAAT 57.024 34.783 3.32 0.00 0.00 1.40
205 206 5.949735 TCGAAATGGCCTTTGTCTTTAATC 58.050 37.500 3.32 0.00 0.00 1.75
206 207 5.710099 TCGAAATGGCCTTTGTCTTTAATCT 59.290 36.000 3.32 0.00 0.00 2.40
207 208 6.882140 TCGAAATGGCCTTTGTCTTTAATCTA 59.118 34.615 3.32 0.00 0.00 1.98
208 209 6.967199 CGAAATGGCCTTTGTCTTTAATCTAC 59.033 38.462 3.32 0.00 0.00 2.59
209 210 7.148239 CGAAATGGCCTTTGTCTTTAATCTACT 60.148 37.037 3.32 0.00 0.00 2.57
210 211 9.174166 GAAATGGCCTTTGTCTTTAATCTACTA 57.826 33.333 3.32 0.00 0.00 1.82
211 212 9.700831 AAATGGCCTTTGTCTTTAATCTACTAT 57.299 29.630 3.32 0.00 0.00 2.12
212 213 9.700831 AATGGCCTTTGTCTTTAATCTACTATT 57.299 29.630 3.32 0.00 0.00 1.73
213 214 8.506168 TGGCCTTTGTCTTTAATCTACTATTG 57.494 34.615 3.32 0.00 0.00 1.90
214 215 8.107095 TGGCCTTTGTCTTTAATCTACTATTGT 58.893 33.333 3.32 0.00 0.00 2.71
215 216 8.613482 GGCCTTTGTCTTTAATCTACTATTGTC 58.387 37.037 0.00 0.00 0.00 3.18
216 217 8.328864 GCCTTTGTCTTTAATCTACTATTGTCG 58.671 37.037 0.00 0.00 0.00 4.35
217 218 9.367444 CCTTTGTCTTTAATCTACTATTGTCGT 57.633 33.333 0.00 0.00 0.00 4.34
221 222 8.653338 TGTCTTTAATCTACTATTGTCGTTTGC 58.347 33.333 0.00 0.00 0.00 3.68
222 223 8.114905 GTCTTTAATCTACTATTGTCGTTTGCC 58.885 37.037 0.00 0.00 0.00 4.52
223 224 6.578020 TTAATCTACTATTGTCGTTTGCCG 57.422 37.500 0.00 0.00 38.13 5.69
224 225 3.853831 TCTACTATTGTCGTTTGCCGA 57.146 42.857 0.00 0.00 45.00 5.54
231 232 4.248402 TCGTTTGCCGAACTACCG 57.752 55.556 0.00 0.00 44.03 4.02
232 233 1.363443 TCGTTTGCCGAACTACCGT 59.637 52.632 0.00 0.00 44.03 4.83
233 234 0.249405 TCGTTTGCCGAACTACCGTT 60.249 50.000 0.00 0.00 44.03 4.44
234 235 0.111001 CGTTTGCCGAACTACCGTTG 60.111 55.000 0.00 0.00 39.56 4.10
235 236 0.236449 GTTTGCCGAACTACCGTTGG 59.764 55.000 0.00 0.00 35.31 3.77
236 237 0.179051 TTTGCCGAACTACCGTTGGT 60.179 50.000 0.00 0.00 40.16 3.67
237 238 0.678395 TTGCCGAACTACCGTTGGTA 59.322 50.000 0.00 0.00 37.09 3.25
238 239 0.678395 TGCCGAACTACCGTTGGTAA 59.322 50.000 0.00 0.00 37.76 2.85
239 240 1.337074 TGCCGAACTACCGTTGGTAAG 60.337 52.381 0.00 0.00 37.76 2.34
240 241 1.067635 GCCGAACTACCGTTGGTAAGA 60.068 52.381 0.00 0.00 37.76 2.10
241 242 2.872370 CCGAACTACCGTTGGTAAGAG 58.128 52.381 0.00 0.00 37.76 2.85
242 243 2.489329 CCGAACTACCGTTGGTAAGAGA 59.511 50.000 0.00 0.00 37.76 3.10
243 244 3.129988 CCGAACTACCGTTGGTAAGAGAT 59.870 47.826 0.00 0.00 37.76 2.75
244 245 4.381292 CCGAACTACCGTTGGTAAGAGATT 60.381 45.833 0.00 0.00 37.76 2.40
245 246 4.797349 CGAACTACCGTTGGTAAGAGATTC 59.203 45.833 0.00 0.00 37.76 2.52
246 247 5.392811 CGAACTACCGTTGGTAAGAGATTCT 60.393 44.000 0.00 0.00 37.76 2.40
247 248 5.579564 ACTACCGTTGGTAAGAGATTCTC 57.420 43.478 5.49 5.49 37.76 2.87
248 249 5.262804 ACTACCGTTGGTAAGAGATTCTCT 58.737 41.667 10.50 10.50 38.69 3.10
249 250 4.457834 ACCGTTGGTAAGAGATTCTCTG 57.542 45.455 16.79 4.64 40.28 3.35
250 251 3.833070 ACCGTTGGTAAGAGATTCTCTGT 59.167 43.478 16.79 9.60 40.28 3.41
251 252 4.082136 ACCGTTGGTAAGAGATTCTCTGTC 60.082 45.833 16.79 12.10 40.28 3.51
252 253 4.082190 CCGTTGGTAAGAGATTCTCTGTCA 60.082 45.833 16.79 12.04 40.28 3.58
253 254 5.394663 CCGTTGGTAAGAGATTCTCTGTCAT 60.395 44.000 16.79 4.07 40.28 3.06
254 255 5.746245 CGTTGGTAAGAGATTCTCTGTCATC 59.254 44.000 16.79 12.26 40.28 2.92
255 256 6.625960 CGTTGGTAAGAGATTCTCTGTCATCA 60.626 42.308 16.79 9.03 40.28 3.07
256 257 6.214191 TGGTAAGAGATTCTCTGTCATCAC 57.786 41.667 16.79 8.15 40.28 3.06
257 258 5.716703 TGGTAAGAGATTCTCTGTCATCACA 59.283 40.000 16.79 7.05 40.28 3.58
258 259 6.039616 GGTAAGAGATTCTCTGTCATCACAC 58.960 44.000 16.79 5.52 40.28 3.82
259 260 5.999205 AAGAGATTCTCTGTCATCACACT 57.001 39.130 16.79 0.00 40.28 3.55
260 261 5.327616 AGAGATTCTCTGTCATCACACTG 57.672 43.478 15.41 0.00 39.62 3.66
261 262 4.771577 AGAGATTCTCTGTCATCACACTGT 59.228 41.667 15.41 0.00 39.62 3.55
262 263 5.948758 AGAGATTCTCTGTCATCACACTGTA 59.051 40.000 15.41 0.00 39.62 2.74
263 264 6.606796 AGAGATTCTCTGTCATCACACTGTAT 59.393 38.462 15.41 0.00 39.62 2.29
264 265 7.123997 AGAGATTCTCTGTCATCACACTGTATT 59.876 37.037 15.41 0.00 39.62 1.89
265 266 8.298729 AGATTCTCTGTCATCACACTGTATTA 57.701 34.615 0.00 0.00 0.00 0.98
266 267 8.194104 AGATTCTCTGTCATCACACTGTATTAC 58.806 37.037 0.00 0.00 0.00 1.89
267 268 7.468141 TTCTCTGTCATCACACTGTATTACT 57.532 36.000 0.00 0.00 0.00 2.24
268 269 6.856895 TCTCTGTCATCACACTGTATTACTG 58.143 40.000 0.00 0.00 0.00 2.74
269 270 6.659242 TCTCTGTCATCACACTGTATTACTGA 59.341 38.462 7.61 0.00 0.00 3.41
270 271 7.340487 TCTCTGTCATCACACTGTATTACTGAT 59.660 37.037 7.61 0.08 0.00 2.90
308 309 2.688507 ACTGTGCTATGCTGTGTGTAC 58.311 47.619 0.00 0.00 0.00 2.90
309 310 2.037121 ACTGTGCTATGCTGTGTGTACA 59.963 45.455 0.00 0.00 35.08 2.90
310 311 2.412870 TGTGCTATGCTGTGTGTACAC 58.587 47.619 19.36 19.36 46.59 2.90
311 312 2.037121 TGTGCTATGCTGTGTGTACACT 59.963 45.455 25.60 7.91 46.55 3.55
312 313 2.668457 GTGCTATGCTGTGTGTACACTC 59.332 50.000 25.60 22.09 46.55 3.51
316 317 2.223537 TGCTGTGTGTACACTCTGTG 57.776 50.000 25.60 16.34 46.55 3.66
335 336 0.166814 GAGCGTTGTCAGCATCAACC 59.833 55.000 11.15 6.26 41.13 3.77
345 347 1.330521 CAGCATCAACCGGGAATAACG 59.669 52.381 6.32 0.00 0.00 3.18
351 353 3.091545 TCAACCGGGAATAACGACTAGT 58.908 45.455 6.32 0.00 0.00 2.57
394 410 5.730296 AGTTCCATATTGATAGAGACCCG 57.270 43.478 0.00 0.00 0.00 5.28
703 763 2.859273 AAGGCTGCCGAGTTCATCCG 62.859 60.000 13.96 0.00 0.00 4.18
756 816 1.571953 CGTTGTGCACCGCATACAA 59.428 52.632 15.69 0.00 41.91 2.41
776 836 9.941664 CATACAAATTCCATTGCTAGTTTCTAG 57.058 33.333 0.00 0.03 33.52 2.43
788 848 7.667043 TGCTAGTTTCTAGTTTTGTGGTATG 57.333 36.000 5.82 0.00 0.00 2.39
847 911 6.677781 TTTGGTTGTTCTCTGTCAACTTAG 57.322 37.500 7.72 0.00 42.15 2.18
897 1083 1.293924 CTCTCACTGCAAATAGCCCG 58.706 55.000 0.00 0.00 44.83 6.13
924 1116 8.693542 AACTGATTTTTCTTTGCTGCATATAC 57.306 30.769 1.84 0.00 0.00 1.47
925 1117 8.059798 ACTGATTTTTCTTTGCTGCATATACT 57.940 30.769 1.84 0.00 0.00 2.12
929 1121 9.875675 GATTTTTCTTTGCTGCATATACTAGAG 57.124 33.333 1.84 0.00 0.00 2.43
943 1135 9.841880 GCATATACTAGAGTCATCGAATGTTTA 57.158 33.333 0.00 0.00 0.00 2.01
948 1140 8.635877 ACTAGAGTCATCGAATGTTTATTCAC 57.364 34.615 0.00 0.00 42.27 3.18
949 1141 8.251026 ACTAGAGTCATCGAATGTTTATTCACA 58.749 33.333 0.00 0.00 42.27 3.58
985 1177 3.451178 GCATCCCTTTACTCAGGTCTACA 59.549 47.826 0.00 0.00 30.96 2.74
993 1185 7.094720 CCCTTTACTCAGGTCTACATATAGTCG 60.095 44.444 0.00 0.00 30.96 4.18
1008 1200 1.153349 GTCGGACAAGATGGGGAGC 60.153 63.158 2.62 0.00 0.00 4.70
1221 1413 7.868415 GTGCTATCCAAGTACTTCATAGGTAAG 59.132 40.741 22.02 15.30 37.79 2.34
1231 1424 5.415961 ACTTCATAGGTAAGCCATATCCCT 58.584 41.667 0.00 0.00 37.19 4.20
1242 1435 1.271934 CCATATCCCTCTCTCACGCTG 59.728 57.143 0.00 0.00 0.00 5.18
1247 1440 2.025155 TCCCTCTCTCACGCTGAATAC 58.975 52.381 0.00 0.00 0.00 1.89
1269 1466 5.250200 ACGTAGCAAAATATGGTGAAGGAA 58.750 37.500 0.00 0.00 40.70 3.36
1277 1474 1.760192 ATGGTGAAGGAATGCAGAGC 58.240 50.000 0.00 0.00 0.00 4.09
1284 1481 1.531423 AGGAATGCAGAGCTTGTGTG 58.469 50.000 0.00 0.00 0.00 3.82
1289 1486 1.153597 TGCAGAGCTTGTGTGTGACG 61.154 55.000 0.00 0.00 0.00 4.35
1296 1493 0.248054 CTTGTGTGTGACGTTGGTGC 60.248 55.000 0.00 0.00 0.00 5.01
1578 1821 7.431249 ACATTTCGTGTATTACATCGATAGGT 58.569 34.615 16.55 16.10 39.91 3.08
1585 1828 6.141844 GTGTATTACATCGATAGGTTGTGACG 59.858 42.308 0.00 0.00 35.17 4.35
1587 1830 3.861276 ACATCGATAGGTTGTGACGAA 57.139 42.857 0.00 0.00 36.62 3.85
1592 1835 4.178540 TCGATAGGTTGTGACGAATTTCC 58.821 43.478 0.00 0.00 0.00 3.13
1594 1837 4.201685 CGATAGGTTGTGACGAATTTCCAC 60.202 45.833 0.00 0.00 0.00 4.02
1605 1848 5.466728 TGACGAATTTCCACAAGAAGAGAAG 59.533 40.000 0.00 0.00 35.40 2.85
1607 1850 6.055588 ACGAATTTCCACAAGAAGAGAAGAA 58.944 36.000 0.00 0.00 35.40 2.52
1609 1852 6.017934 CGAATTTCCACAAGAAGAGAAGAACA 60.018 38.462 0.00 0.00 35.40 3.18
1610 1853 6.625873 ATTTCCACAAGAAGAGAAGAACAC 57.374 37.500 0.00 0.00 35.40 3.32
1612 1855 4.697514 TCCACAAGAAGAGAAGAACACAG 58.302 43.478 0.00 0.00 0.00 3.66
1782 2044 7.447374 TTGCGGTAATGGATAATATTCTTGG 57.553 36.000 0.00 0.00 0.00 3.61
1894 2486 2.637872 TCAGGTTTGTAGAGACCCAAGG 59.362 50.000 0.00 0.00 36.57 3.61
2237 3105 1.594331 GGATCAACGAGGGCAATACC 58.406 55.000 0.00 0.00 37.93 2.73
2250 3118 3.527533 GGCAATACCGTCATAGACAACA 58.472 45.455 0.00 0.00 32.09 3.33
2504 3401 9.295825 TGTCATTAATCTCTTGGTATTTTGTGT 57.704 29.630 0.00 0.00 0.00 3.72
2598 3495 3.644966 ATTCAATTGAGGCCGGAGTTA 57.355 42.857 5.05 0.00 0.00 2.24
2627 3625 5.415701 AGGTATTGACATGGTAAGCAAAGTG 59.584 40.000 0.00 0.00 0.00 3.16
2646 3644 2.083774 TGCAATCACCTTTCATCGACC 58.916 47.619 0.00 0.00 0.00 4.79
2672 3670 8.333908 CAAAGTTGAGTTAATAGCTAGCATGAG 58.666 37.037 18.83 0.00 0.00 2.90
2673 3671 5.988561 AGTTGAGTTAATAGCTAGCATGAGC 59.011 40.000 18.83 4.08 43.19 4.26
2903 4329 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2904 4330 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2905 4331 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2906 4332 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2907 4333 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
2908 4334 5.596361 TCTCTCTCTCTCTCTCTCTCTCTTC 59.404 48.000 0.00 0.00 0.00 2.87
2953 4380 7.540474 TTGGTTAAAAGGTATTTGGCATGTA 57.460 32.000 0.00 0.00 0.00 2.29
3163 4590 2.767505 AGCAAGTTAGTTCCGGACAAG 58.232 47.619 1.83 0.00 0.00 3.16
3310 4770 7.450014 TGAAAAATGGAAAATCTGCCTACACTA 59.550 33.333 0.00 0.00 0.00 2.74
3343 4803 1.153429 CCGAAGAAGGCCGGTAAGG 60.153 63.158 1.90 0.00 40.78 2.69
3375 4835 0.947180 GAAGCCACGCCGACAACTTA 60.947 55.000 0.00 0.00 0.00 2.24
3452 4913 2.685850 ACTACTGGTAAATGGCGTCC 57.314 50.000 0.00 0.00 0.00 4.79
3466 4927 0.729140 GCGTCCCTTGTTTCATTGCG 60.729 55.000 0.00 0.00 0.00 4.85
3471 4932 3.500680 GTCCCTTGTTTCATTGCGTCTAA 59.499 43.478 0.00 0.00 0.00 2.10
3474 4935 5.353123 TCCCTTGTTTCATTGCGTCTAATAC 59.647 40.000 0.00 0.00 0.00 1.89
3476 4937 6.456988 CCCTTGTTTCATTGCGTCTAATACTC 60.457 42.308 0.00 0.00 0.00 2.59
3481 4942 4.933330 TCATTGCGTCTAATACTCCTGAC 58.067 43.478 0.00 0.00 0.00 3.51
3489 4951 5.512473 GTCTAATACTCCTGACTTGTAGCG 58.488 45.833 0.00 0.00 0.00 4.26
3495 4957 0.240145 CCTGACTTGTAGCGACGTCA 59.760 55.000 17.16 7.30 35.35 4.35
3505 4970 5.635549 TGTAGCGACGTCATCAATAAATG 57.364 39.130 17.16 0.00 0.00 2.32
3506 4971 5.344884 TGTAGCGACGTCATCAATAAATGA 58.655 37.500 17.16 0.00 43.67 2.57
3510 4975 5.121611 AGCGACGTCATCAATAAATGAAACA 59.878 36.000 17.16 0.00 42.54 2.83
4029 5504 0.035458 CGGAGGCCAAGAAGTGAGTT 59.965 55.000 5.01 0.00 0.00 3.01
4037 5512 3.808618 GCCAAGAAGTGAGTTGGATGAGT 60.809 47.826 5.28 0.00 45.35 3.41
4049 5524 2.456577 TGGATGAGTTGACCGAGATGA 58.543 47.619 0.00 0.00 0.00 2.92
4066 5550 5.601662 GAGATGAAATGTATCTCGGTTGGA 58.398 41.667 0.00 0.00 40.62 3.53
4154 5652 1.002900 CGGCTGTTGTGGTGTTAGTTG 60.003 52.381 0.00 0.00 0.00 3.16
4163 5661 2.422127 GTGGTGTTAGTTGTGTTGTGCT 59.578 45.455 0.00 0.00 0.00 4.40
4207 5708 3.826157 GACATCCTCCCATCAGAGAGTAG 59.174 52.174 0.00 0.00 35.82 2.57
4212 5713 2.955660 CTCCCATCAGAGAGTAGGTGAC 59.044 54.545 0.00 0.00 35.82 3.67
4253 5754 2.093216 GAGCATCTTCAACAGCGGG 58.907 57.895 0.00 0.00 0.00 6.13
4343 5895 3.497031 GGTGGGAAACTAGCGCGC 61.497 66.667 26.66 26.66 0.00 6.86
4447 6021 2.584064 CCTATCCGCACTGCCACA 59.416 61.111 0.00 0.00 0.00 4.17
4657 6259 2.985117 ATACGACGTGGCAGCGTGA 61.985 57.895 17.34 5.69 45.79 4.35
4894 6497 2.283529 GGTGGAGAGGACGGCAAGA 61.284 63.158 0.00 0.00 0.00 3.02
4974 6577 2.812178 CGTTAACGCCGGTGGGAG 60.812 66.667 21.14 1.84 39.33 4.30
4986 6589 1.279271 CGGTGGGAGGTCATTCTTCTT 59.721 52.381 0.00 0.00 0.00 2.52
5014 6617 2.612721 CGATGATCGTTGGGATGGCATA 60.613 50.000 6.68 0.00 34.82 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.813148 GCTACATGTATATTCTATTGTCGGTGT 59.187 37.037 5.91 0.00 0.00 4.16
1 2 7.812669 TGCTACATGTATATTCTATTGTCGGTG 59.187 37.037 5.91 0.00 0.00 4.94
2 3 7.892609 TGCTACATGTATATTCTATTGTCGGT 58.107 34.615 5.91 0.00 0.00 4.69
3 4 8.757164 TTGCTACATGTATATTCTATTGTCGG 57.243 34.615 5.91 0.00 0.00 4.79
53 54 9.160412 ACTCATGTAGCTTAGTCCCTATTTATT 57.840 33.333 0.00 0.00 0.00 1.40
54 55 8.728596 ACTCATGTAGCTTAGTCCCTATTTAT 57.271 34.615 0.00 0.00 0.00 1.40
55 56 8.421784 CAACTCATGTAGCTTAGTCCCTATTTA 58.578 37.037 0.00 0.00 0.00 1.40
56 57 7.275920 CAACTCATGTAGCTTAGTCCCTATTT 58.724 38.462 0.00 0.00 0.00 1.40
57 58 6.686632 GCAACTCATGTAGCTTAGTCCCTATT 60.687 42.308 0.00 0.00 0.00 1.73
58 59 5.221541 GCAACTCATGTAGCTTAGTCCCTAT 60.222 44.000 0.00 0.00 0.00 2.57
59 60 4.099573 GCAACTCATGTAGCTTAGTCCCTA 59.900 45.833 0.00 0.00 0.00 3.53
60 61 3.118592 GCAACTCATGTAGCTTAGTCCCT 60.119 47.826 0.00 0.00 0.00 4.20
61 62 3.198872 GCAACTCATGTAGCTTAGTCCC 58.801 50.000 0.00 0.00 0.00 4.46
62 63 3.198872 GGCAACTCATGTAGCTTAGTCC 58.801 50.000 0.00 0.00 0.00 3.85
63 64 2.860735 CGGCAACTCATGTAGCTTAGTC 59.139 50.000 0.00 0.00 0.00 2.59
64 65 2.233922 ACGGCAACTCATGTAGCTTAGT 59.766 45.455 0.00 0.00 0.00 2.24
65 66 2.893637 ACGGCAACTCATGTAGCTTAG 58.106 47.619 0.00 0.00 0.00 2.18
66 67 3.000041 CAACGGCAACTCATGTAGCTTA 59.000 45.455 0.00 0.00 0.00 3.09
67 68 1.806542 CAACGGCAACTCATGTAGCTT 59.193 47.619 0.00 0.00 0.00 3.74
68 69 1.001974 TCAACGGCAACTCATGTAGCT 59.998 47.619 0.00 0.00 0.00 3.32
69 70 1.438651 TCAACGGCAACTCATGTAGC 58.561 50.000 0.00 0.00 0.00 3.58
70 71 3.067106 ACTTCAACGGCAACTCATGTAG 58.933 45.455 0.00 0.00 0.00 2.74
71 72 3.120321 ACTTCAACGGCAACTCATGTA 57.880 42.857 0.00 0.00 0.00 2.29
72 73 1.967319 ACTTCAACGGCAACTCATGT 58.033 45.000 0.00 0.00 0.00 3.21
73 74 2.605338 CCAACTTCAACGGCAACTCATG 60.605 50.000 0.00 0.00 0.00 3.07
74 75 1.608590 CCAACTTCAACGGCAACTCAT 59.391 47.619 0.00 0.00 0.00 2.90
75 76 1.021202 CCAACTTCAACGGCAACTCA 58.979 50.000 0.00 0.00 0.00 3.41
76 77 1.264288 CTCCAACTTCAACGGCAACTC 59.736 52.381 0.00 0.00 0.00 3.01
77 78 1.308998 CTCCAACTTCAACGGCAACT 58.691 50.000 0.00 0.00 0.00 3.16
78 79 0.317854 GCTCCAACTTCAACGGCAAC 60.318 55.000 0.00 0.00 0.00 4.17
79 80 0.749818 TGCTCCAACTTCAACGGCAA 60.750 50.000 0.00 0.00 0.00 4.52
80 81 0.537143 ATGCTCCAACTTCAACGGCA 60.537 50.000 0.00 0.00 0.00 5.69
81 82 0.598065 AATGCTCCAACTTCAACGGC 59.402 50.000 0.00 0.00 0.00 5.68
82 83 4.701956 AATAATGCTCCAACTTCAACGG 57.298 40.909 0.00 0.00 0.00 4.44
83 84 4.858692 CCAAATAATGCTCCAACTTCAACG 59.141 41.667 0.00 0.00 0.00 4.10
84 85 5.170748 CCCAAATAATGCTCCAACTTCAAC 58.829 41.667 0.00 0.00 0.00 3.18
85 86 4.222588 CCCCAAATAATGCTCCAACTTCAA 59.777 41.667 0.00 0.00 0.00 2.69
86 87 3.768757 CCCCAAATAATGCTCCAACTTCA 59.231 43.478 0.00 0.00 0.00 3.02
87 88 3.430790 GCCCCAAATAATGCTCCAACTTC 60.431 47.826 0.00 0.00 0.00 3.01
88 89 2.501316 GCCCCAAATAATGCTCCAACTT 59.499 45.455 0.00 0.00 0.00 2.66
89 90 2.110578 GCCCCAAATAATGCTCCAACT 58.889 47.619 0.00 0.00 0.00 3.16
90 91 2.110578 AGCCCCAAATAATGCTCCAAC 58.889 47.619 0.00 0.00 0.00 3.77
91 92 2.548464 AGCCCCAAATAATGCTCCAA 57.452 45.000 0.00 0.00 0.00 3.53
92 93 3.678965 TTAGCCCCAAATAATGCTCCA 57.321 42.857 0.00 0.00 35.34 3.86
93 94 5.351948 TTTTTAGCCCCAAATAATGCTCC 57.648 39.130 0.00 0.00 35.34 4.70
94 95 5.359756 CCTTTTTAGCCCCAAATAATGCTC 58.640 41.667 0.00 0.00 35.34 4.26
95 96 4.164030 CCCTTTTTAGCCCCAAATAATGCT 59.836 41.667 0.00 0.00 37.84 3.79
96 97 4.163268 TCCCTTTTTAGCCCCAAATAATGC 59.837 41.667 0.00 0.00 0.00 3.56
97 98 5.163311 CCTCCCTTTTTAGCCCCAAATAATG 60.163 44.000 0.00 0.00 0.00 1.90
98 99 4.968719 CCTCCCTTTTTAGCCCCAAATAAT 59.031 41.667 0.00 0.00 0.00 1.28
99 100 4.046103 TCCTCCCTTTTTAGCCCCAAATAA 59.954 41.667 0.00 0.00 0.00 1.40
100 101 3.598782 TCCTCCCTTTTTAGCCCCAAATA 59.401 43.478 0.00 0.00 0.00 1.40
101 102 2.385417 TCCTCCCTTTTTAGCCCCAAAT 59.615 45.455 0.00 0.00 0.00 2.32
102 103 1.790157 TCCTCCCTTTTTAGCCCCAAA 59.210 47.619 0.00 0.00 0.00 3.28
103 104 1.357761 CTCCTCCCTTTTTAGCCCCAA 59.642 52.381 0.00 0.00 0.00 4.12
104 105 0.999712 CTCCTCCCTTTTTAGCCCCA 59.000 55.000 0.00 0.00 0.00 4.96
105 106 0.395862 GCTCCTCCCTTTTTAGCCCC 60.396 60.000 0.00 0.00 0.00 5.80
106 107 0.395862 GGCTCCTCCCTTTTTAGCCC 60.396 60.000 0.00 0.00 45.69 5.19
107 108 3.192799 GGCTCCTCCCTTTTTAGCC 57.807 57.895 0.00 0.00 45.37 3.93
117 118 2.046217 GTCAAACGGGGCTCCTCC 60.046 66.667 0.00 0.00 0.00 4.30
118 119 1.026718 CATGTCAAACGGGGCTCCTC 61.027 60.000 0.00 0.00 0.00 3.71
119 120 1.002134 CATGTCAAACGGGGCTCCT 60.002 57.895 0.00 0.00 0.00 3.69
120 121 1.303317 ACATGTCAAACGGGGCTCC 60.303 57.895 0.00 0.00 0.00 4.70
121 122 1.875963 CACATGTCAAACGGGGCTC 59.124 57.895 0.00 0.00 0.00 4.70
122 123 2.268076 GCACATGTCAAACGGGGCT 61.268 57.895 0.00 0.00 0.00 5.19
123 124 2.258286 GCACATGTCAAACGGGGC 59.742 61.111 0.00 0.00 0.00 5.80
124 125 2.560861 CGCACATGTCAAACGGGG 59.439 61.111 0.00 0.00 0.00 5.73
125 126 2.560861 CCGCACATGTCAAACGGG 59.439 61.111 15.06 4.66 40.18 5.28
126 127 2.560861 CCCGCACATGTCAAACGG 59.439 61.111 15.64 15.64 43.44 4.44
127 128 2.126888 GCCCGCACATGTCAAACG 60.127 61.111 0.00 0.00 0.00 3.60
128 129 0.387239 GAAGCCCGCACATGTCAAAC 60.387 55.000 0.00 0.00 0.00 2.93
129 130 1.851021 CGAAGCCCGCACATGTCAAA 61.851 55.000 0.00 0.00 0.00 2.69
130 131 2.324330 CGAAGCCCGCACATGTCAA 61.324 57.895 0.00 0.00 0.00 3.18
131 132 2.741985 CGAAGCCCGCACATGTCA 60.742 61.111 0.00 0.00 0.00 3.58
132 133 1.852067 AAACGAAGCCCGCACATGTC 61.852 55.000 0.00 0.00 43.32 3.06
133 134 1.452145 AAAACGAAGCCCGCACATGT 61.452 50.000 0.00 0.00 43.32 3.21
134 135 0.519519 TAAAACGAAGCCCGCACATG 59.480 50.000 0.00 0.00 43.32 3.21
135 136 0.802494 CTAAAACGAAGCCCGCACAT 59.198 50.000 0.00 0.00 43.32 3.21
136 137 1.231958 CCTAAAACGAAGCCCGCACA 61.232 55.000 0.00 0.00 43.32 4.57
137 138 1.500396 CCTAAAACGAAGCCCGCAC 59.500 57.895 0.00 0.00 43.32 5.34
138 139 1.673009 CCCTAAAACGAAGCCCGCA 60.673 57.895 0.00 0.00 43.32 5.69
139 140 3.047718 GCCCTAAAACGAAGCCCGC 62.048 63.158 0.00 0.00 43.32 6.13
140 141 0.958876 AAGCCCTAAAACGAAGCCCG 60.959 55.000 0.00 0.00 45.44 6.13
141 142 1.201647 GAAAGCCCTAAAACGAAGCCC 59.798 52.381 0.00 0.00 0.00 5.19
142 143 2.095212 CAGAAAGCCCTAAAACGAAGCC 60.095 50.000 0.00 0.00 0.00 4.35
143 144 2.668556 GCAGAAAGCCCTAAAACGAAGC 60.669 50.000 0.00 0.00 37.23 3.86
144 145 3.203161 GCAGAAAGCCCTAAAACGAAG 57.797 47.619 0.00 0.00 37.23 3.79
145 146 9.114674 GTTTCTAGCAGAAAGCCCTAAAACGAA 62.115 40.741 10.39 0.00 44.07 3.85
146 147 7.727591 GTTTCTAGCAGAAAGCCCTAAAACGA 61.728 42.308 10.39 0.00 44.07 3.85
147 148 5.617087 GTTTCTAGCAGAAAGCCCTAAAACG 60.617 44.000 10.39 0.00 44.07 3.60
148 149 5.617087 CGTTTCTAGCAGAAAGCCCTAAAAC 60.617 44.000 10.39 0.00 44.07 2.43
149 150 4.454504 CGTTTCTAGCAGAAAGCCCTAAAA 59.545 41.667 10.39 0.00 44.07 1.52
150 151 4.000988 CGTTTCTAGCAGAAAGCCCTAAA 58.999 43.478 10.39 0.00 44.07 1.85
151 152 3.596214 CGTTTCTAGCAGAAAGCCCTAA 58.404 45.455 10.39 0.00 44.07 2.69
152 153 2.677037 GCGTTTCTAGCAGAAAGCCCTA 60.677 50.000 10.39 0.00 44.07 3.53
153 154 1.946283 GCGTTTCTAGCAGAAAGCCCT 60.946 52.381 10.39 0.00 44.07 5.19
154 155 0.448197 GCGTTTCTAGCAGAAAGCCC 59.552 55.000 10.39 1.62 44.07 5.19
155 156 1.395262 GAGCGTTTCTAGCAGAAAGCC 59.605 52.381 17.98 11.14 44.07 4.35
156 157 1.395262 GGAGCGTTTCTAGCAGAAAGC 59.605 52.381 10.39 13.76 44.07 3.51
157 158 2.688507 TGGAGCGTTTCTAGCAGAAAG 58.311 47.619 10.39 7.29 44.07 2.62
158 159 2.831685 TGGAGCGTTTCTAGCAGAAA 57.168 45.000 7.09 7.09 41.51 2.52
159 160 2.612972 CCTTGGAGCGTTTCTAGCAGAA 60.613 50.000 0.00 0.00 37.01 3.02
160 161 1.066858 CCTTGGAGCGTTTCTAGCAGA 60.067 52.381 0.00 0.00 37.01 4.26
161 162 1.338200 ACCTTGGAGCGTTTCTAGCAG 60.338 52.381 0.00 0.00 37.01 4.24
162 163 0.685097 ACCTTGGAGCGTTTCTAGCA 59.315 50.000 0.00 0.00 37.01 3.49
163 164 1.732809 GAACCTTGGAGCGTTTCTAGC 59.267 52.381 0.00 0.00 0.00 3.42
164 165 1.993370 CGAACCTTGGAGCGTTTCTAG 59.007 52.381 0.00 0.00 0.00 2.43
165 166 1.614903 TCGAACCTTGGAGCGTTTCTA 59.385 47.619 0.00 0.00 0.00 2.10
166 167 0.391597 TCGAACCTTGGAGCGTTTCT 59.608 50.000 0.00 0.00 0.00 2.52
167 168 1.223187 TTCGAACCTTGGAGCGTTTC 58.777 50.000 0.00 0.00 0.00 2.78
168 169 1.670791 TTTCGAACCTTGGAGCGTTT 58.329 45.000 0.00 0.00 0.00 3.60
169 170 1.535462 CATTTCGAACCTTGGAGCGTT 59.465 47.619 0.00 0.00 0.00 4.84
170 171 1.156736 CATTTCGAACCTTGGAGCGT 58.843 50.000 0.00 0.00 0.00 5.07
171 172 0.447801 CCATTTCGAACCTTGGAGCG 59.552 55.000 13.27 0.00 0.00 5.03
172 173 0.171231 GCCATTTCGAACCTTGGAGC 59.829 55.000 19.88 6.37 0.00 4.70
173 174 0.811281 GGCCATTTCGAACCTTGGAG 59.189 55.000 19.88 1.28 0.00 3.86
174 175 0.404040 AGGCCATTTCGAACCTTGGA 59.596 50.000 19.88 0.00 0.00 3.53
175 176 1.256812 AAGGCCATTTCGAACCTTGG 58.743 50.000 14.97 14.43 40.97 3.61
176 177 2.035832 ACAAAGGCCATTTCGAACCTTG 59.964 45.455 16.09 12.81 41.65 3.61
177 178 2.296190 GACAAAGGCCATTTCGAACCTT 59.704 45.455 5.01 11.03 44.37 3.50
178 179 1.886542 GACAAAGGCCATTTCGAACCT 59.113 47.619 5.01 0.00 0.00 3.50
179 180 1.886542 AGACAAAGGCCATTTCGAACC 59.113 47.619 5.01 0.00 0.00 3.62
180 181 3.643159 AAGACAAAGGCCATTTCGAAC 57.357 42.857 5.01 0.00 0.00 3.95
181 182 5.776173 TTAAAGACAAAGGCCATTTCGAA 57.224 34.783 5.01 0.00 0.00 3.71
182 183 5.710099 AGATTAAAGACAAAGGCCATTTCGA 59.290 36.000 5.01 0.00 0.00 3.71
183 184 5.954335 AGATTAAAGACAAAGGCCATTTCG 58.046 37.500 5.01 0.00 0.00 3.46
184 185 8.056407 AGTAGATTAAAGACAAAGGCCATTTC 57.944 34.615 5.01 0.00 0.00 2.17
185 186 9.700831 ATAGTAGATTAAAGACAAAGGCCATTT 57.299 29.630 5.01 0.00 0.00 2.32
186 187 9.700831 AATAGTAGATTAAAGACAAAGGCCATT 57.299 29.630 5.01 0.00 0.00 3.16
187 188 9.125026 CAATAGTAGATTAAAGACAAAGGCCAT 57.875 33.333 5.01 0.00 0.00 4.40
188 189 8.107095 ACAATAGTAGATTAAAGACAAAGGCCA 58.893 33.333 5.01 0.00 0.00 5.36
189 190 8.507524 ACAATAGTAGATTAAAGACAAAGGCC 57.492 34.615 0.00 0.00 0.00 5.19
190 191 8.328864 CGACAATAGTAGATTAAAGACAAAGGC 58.671 37.037 0.00 0.00 0.00 4.35
191 192 9.367444 ACGACAATAGTAGATTAAAGACAAAGG 57.633 33.333 0.00 0.00 0.00 3.11
195 196 8.653338 GCAAACGACAATAGTAGATTAAAGACA 58.347 33.333 0.00 0.00 0.00 3.41
196 197 8.114905 GGCAAACGACAATAGTAGATTAAAGAC 58.885 37.037 0.00 0.00 0.00 3.01
197 198 8.193250 GGCAAACGACAATAGTAGATTAAAGA 57.807 34.615 0.00 0.00 0.00 2.52
215 216 0.111001 CAACGGTAGTTCGGCAAACG 60.111 55.000 0.00 0.00 43.02 3.60
216 217 0.236449 CCAACGGTAGTTCGGCAAAC 59.764 55.000 0.00 0.00 38.79 2.93
217 218 0.179051 ACCAACGGTAGTTCGGCAAA 60.179 50.000 0.00 0.00 38.79 3.68
218 219 0.678395 TACCAACGGTAGTTCGGCAA 59.322 50.000 0.00 0.00 38.79 4.52
219 220 0.678395 TTACCAACGGTAGTTCGGCA 59.322 50.000 0.00 0.00 39.52 5.69
220 221 1.067635 TCTTACCAACGGTAGTTCGGC 60.068 52.381 0.00 0.00 39.52 5.54
221 222 2.489329 TCTCTTACCAACGGTAGTTCGG 59.511 50.000 0.00 0.00 39.52 4.30
222 223 3.837213 TCTCTTACCAACGGTAGTTCG 57.163 47.619 0.00 0.00 39.52 3.95
223 224 5.963594 AGAATCTCTTACCAACGGTAGTTC 58.036 41.667 0.00 0.00 39.52 3.01
224 225 5.963594 GAGAATCTCTTACCAACGGTAGTT 58.036 41.667 2.45 0.00 39.52 2.24
225 226 5.579564 GAGAATCTCTTACCAACGGTAGT 57.420 43.478 2.45 0.00 39.52 2.73
241 242 8.194104 AGTAATACAGTGTGATGACAGAGAATC 58.806 37.037 5.88 0.00 30.74 2.52
242 243 7.978414 CAGTAATACAGTGTGATGACAGAGAAT 59.022 37.037 5.88 0.00 30.74 2.40
243 244 7.176690 TCAGTAATACAGTGTGATGACAGAGAA 59.823 37.037 5.88 0.00 30.74 2.87
244 245 6.659242 TCAGTAATACAGTGTGATGACAGAGA 59.341 38.462 5.88 0.00 30.74 3.10
245 246 6.856895 TCAGTAATACAGTGTGATGACAGAG 58.143 40.000 5.88 0.00 30.74 3.35
246 247 6.834168 TCAGTAATACAGTGTGATGACAGA 57.166 37.500 5.88 0.00 30.74 3.41
247 248 9.025020 GTTATCAGTAATACAGTGTGATGACAG 57.975 37.037 5.88 0.00 35.37 3.51
248 249 8.749354 AGTTATCAGTAATACAGTGTGATGACA 58.251 33.333 5.88 0.00 36.88 3.58
264 265 9.890629 AGTTCATGCTGAAAATAGTTATCAGTA 57.109 29.630 13.02 10.47 42.00 2.74
265 266 8.671921 CAGTTCATGCTGAAAATAGTTATCAGT 58.328 33.333 13.02 0.00 42.00 3.41
266 267 8.671921 ACAGTTCATGCTGAAAATAGTTATCAG 58.328 33.333 7.27 9.35 38.22 2.90
267 268 8.453320 CACAGTTCATGCTGAAAATAGTTATCA 58.547 33.333 7.27 0.00 38.22 2.15
268 269 7.430502 GCACAGTTCATGCTGAAAATAGTTATC 59.569 37.037 7.27 0.00 38.22 1.75
269 270 7.253422 GCACAGTTCATGCTGAAAATAGTTAT 58.747 34.615 7.27 0.00 38.22 1.89
270 271 6.611381 GCACAGTTCATGCTGAAAATAGTTA 58.389 36.000 7.27 0.00 38.22 2.24
308 309 1.135046 CTGACAACGCTCACAGAGTG 58.865 55.000 6.07 6.07 44.67 3.51
309 310 0.598680 GCTGACAACGCTCACAGAGT 60.599 55.000 0.00 0.00 32.90 3.24
310 311 0.598419 TGCTGACAACGCTCACAGAG 60.598 55.000 0.00 0.00 32.90 3.35
311 312 0.033920 ATGCTGACAACGCTCACAGA 59.966 50.000 0.00 0.00 32.90 3.41
312 313 0.441533 GATGCTGACAACGCTCACAG 59.558 55.000 0.00 0.00 0.00 3.66
316 317 0.166814 GGTTGATGCTGACAACGCTC 59.833 55.000 0.00 0.00 45.56 5.03
600 655 2.827921 GTGTCCTGCCATGAAAGGAAAT 59.172 45.455 15.55 0.00 44.15 2.17
692 752 1.970917 GCAACAGCCGGATGAACTCG 61.971 60.000 29.47 10.29 0.00 4.18
703 763 1.291132 GATACCTTCTCGCAACAGCC 58.709 55.000 0.00 0.00 0.00 4.85
746 806 2.760092 AGCAATGGAATTTGTATGCGGT 59.240 40.909 0.00 0.00 38.74 5.68
748 808 5.173774 ACTAGCAATGGAATTTGTATGCG 57.826 39.130 0.00 0.00 38.74 4.73
756 816 8.860088 ACAAAACTAGAAACTAGCAATGGAATT 58.140 29.630 0.00 0.00 36.63 2.17
847 911 4.814234 TGTTGGTGACATCAAGTTACTGAC 59.186 41.667 0.08 0.00 42.32 3.51
897 1083 8.693542 ATATGCAGCAAAGAAAAATCAGTTAC 57.306 30.769 0.00 0.00 0.00 2.50
924 1116 8.634475 TGTGAATAAACATTCGATGACTCTAG 57.366 34.615 0.00 0.00 33.42 2.43
925 1117 8.996024 TTGTGAATAAACATTCGATGACTCTA 57.004 30.769 0.00 0.00 33.42 2.43
929 1121 8.788813 GTGAATTGTGAATAAACATTCGATGAC 58.211 33.333 0.00 0.00 33.42 3.06
943 1135 7.431249 GGATGCTAATCATGTGAATTGTGAAT 58.569 34.615 0.00 0.00 35.05 2.57
944 1136 6.183360 GGGATGCTAATCATGTGAATTGTGAA 60.183 38.462 0.00 0.00 35.05 3.18
945 1137 5.300034 GGGATGCTAATCATGTGAATTGTGA 59.700 40.000 0.00 0.00 35.05 3.58
946 1138 5.301045 AGGGATGCTAATCATGTGAATTGTG 59.699 40.000 0.00 0.00 35.05 3.33
947 1139 5.452255 AGGGATGCTAATCATGTGAATTGT 58.548 37.500 0.00 0.00 35.05 2.71
948 1140 6.401047 AAGGGATGCTAATCATGTGAATTG 57.599 37.500 0.00 0.00 35.05 2.32
949 1141 7.781693 AGTAAAGGGATGCTAATCATGTGAATT 59.218 33.333 0.00 0.00 35.05 2.17
985 1177 4.090090 CTCCCCATCTTGTCCGACTATAT 58.910 47.826 0.00 0.00 0.00 0.86
993 1185 1.450312 CACGCTCCCCATCTTGTCC 60.450 63.158 0.00 0.00 0.00 4.02
1008 1200 2.489275 AAAGGTGGCCTTGTGCACG 61.489 57.895 13.13 0.00 43.92 5.34
1221 1413 0.037790 GCGTGAGAGAGGGATATGGC 60.038 60.000 0.00 0.00 0.00 4.40
1231 1424 2.031807 GCTACGTATTCAGCGTGAGAGA 59.968 50.000 0.00 0.00 42.87 3.10
1242 1435 7.225931 TCCTTCACCATATTTTGCTACGTATTC 59.774 37.037 0.00 0.00 0.00 1.75
1247 1440 5.811399 TTCCTTCACCATATTTTGCTACG 57.189 39.130 0.00 0.00 0.00 3.51
1269 1466 1.233019 GTCACACACAAGCTCTGCAT 58.767 50.000 0.00 0.00 0.00 3.96
1277 1474 0.248054 GCACCAACGTCACACACAAG 60.248 55.000 0.00 0.00 0.00 3.16
1284 1481 2.127270 CATGCGCACCAACGTCAC 60.127 61.111 14.90 0.00 34.88 3.67
1289 1486 2.203972 ATCACAGCATGCGCACCAAC 62.204 55.000 14.90 1.74 42.53 3.77
1547 1786 8.964150 TCGATGTAATACACGAAATGTAATCTG 58.036 33.333 12.91 0.00 46.90 2.90
1551 1790 9.401873 CCTATCGATGTAATACACGAAATGTAA 57.598 33.333 17.02 0.30 46.90 2.41
1578 1821 4.878971 TCTTCTTGTGGAAATTCGTCACAA 59.121 37.500 14.08 14.08 45.47 3.33
1585 1828 7.135467 GTGTTCTTCTCTTCTTGTGGAAATTC 58.865 38.462 0.00 0.00 33.07 2.17
1587 1830 6.122277 TGTGTTCTTCTCTTCTTGTGGAAAT 58.878 36.000 0.00 0.00 33.07 2.17
1592 1835 4.260538 GCACTGTGTTCTTCTCTTCTTGTG 60.261 45.833 9.86 0.00 0.00 3.33
1594 1837 3.060003 CGCACTGTGTTCTTCTCTTCTTG 60.060 47.826 9.86 0.00 0.00 3.02
1605 1848 2.352651 ACATATGCATCGCACTGTGTTC 59.647 45.455 0.19 0.00 43.04 3.18
1607 1850 2.028420 ACATATGCATCGCACTGTGT 57.972 45.000 0.19 0.00 43.04 3.72
1609 1852 5.277974 GGAATTAACATATGCATCGCACTGT 60.278 40.000 0.19 0.00 43.04 3.55
1610 1853 5.149273 GGAATTAACATATGCATCGCACTG 58.851 41.667 0.19 0.00 43.04 3.66
1612 1855 4.475944 GGGAATTAACATATGCATCGCAC 58.524 43.478 0.19 0.00 43.04 5.34
1894 2486 0.392461 TTTCATAGCAGCGTCCCCAC 60.392 55.000 0.00 0.00 0.00 4.61
2237 3105 4.441792 TCATCCCATTGTTGTCTATGACG 58.558 43.478 0.00 0.00 34.95 4.35
2243 3111 4.581309 AGTCATCATCCCATTGTTGTCT 57.419 40.909 0.00 0.00 0.00 3.41
2250 3118 6.832384 GGCATATGAATAGTCATCATCCCATT 59.168 38.462 9.29 0.00 43.69 3.16
2297 3165 4.235372 CCATAATAGTGGAGACCCCTCTT 58.765 47.826 0.00 0.00 42.02 2.85
2303 3171 6.493802 TGTATGAGACCATAATAGTGGAGACC 59.506 42.308 0.00 0.00 42.02 3.85
2504 3401 9.613428 CAGTCTGAAATCACAAAACCCTATATA 57.387 33.333 0.00 0.00 0.00 0.86
2598 3495 4.517285 CTTACCATGTCAATACCTGCACT 58.483 43.478 0.00 0.00 0.00 4.40
2627 3625 2.083774 TGGTCGATGAAAGGTGATTGC 58.916 47.619 0.00 0.00 0.00 3.56
2639 3637 6.313905 AGCTATTAACTCAACTTTGGTCGATG 59.686 38.462 0.00 0.00 0.00 3.84
2646 3644 8.201554 TCATGCTAGCTATTAACTCAACTTTG 57.798 34.615 17.23 0.00 0.00 2.77
2672 3670 6.183360 ACAAGGAACATACTTTATCATGCAGC 60.183 38.462 0.00 0.00 0.00 5.25
2673 3671 7.281774 AGACAAGGAACATACTTTATCATGCAG 59.718 37.037 0.00 0.00 0.00 4.41
2679 3677 7.923414 AACCAGACAAGGAACATACTTTATC 57.077 36.000 0.00 0.00 0.00 1.75
2941 4367 6.695429 TCTGCAAAACAATACATGCCAAATA 58.305 32.000 0.00 0.00 38.00 1.40
2942 4368 5.549347 TCTGCAAAACAATACATGCCAAAT 58.451 33.333 0.00 0.00 38.00 2.32
2943 4369 4.953667 TCTGCAAAACAATACATGCCAAA 58.046 34.783 0.00 0.00 38.00 3.28
2946 4372 4.746729 TGATCTGCAAAACAATACATGCC 58.253 39.130 0.00 0.00 38.00 4.40
2953 4380 4.529377 AGGAACCATGATCTGCAAAACAAT 59.471 37.500 0.00 0.00 0.00 2.71
3163 4590 8.770438 ATGAACTGTGAGAGAAAGAAAGTATC 57.230 34.615 0.00 0.00 0.00 2.24
3264 4724 3.896888 TCAGCAACACCAATGATTTCCTT 59.103 39.130 0.00 0.00 0.00 3.36
3310 4770 2.030562 CGGGAGAGGCAACAACGT 59.969 61.111 0.00 0.00 41.41 3.99
3343 4803 2.507324 GCTTCCAGCGACGAGGAC 60.507 66.667 8.74 0.00 32.62 3.85
3375 4835 0.706433 ATCCTCCACATTGGTTGCCT 59.294 50.000 0.00 0.00 39.03 4.75
3452 4913 6.422776 AGTATTAGACGCAATGAAACAAGG 57.577 37.500 0.00 0.00 0.00 3.61
3466 4927 5.296283 TCGCTACAAGTCAGGAGTATTAGAC 59.704 44.000 0.00 0.00 0.00 2.59
3471 4932 2.355132 CGTCGCTACAAGTCAGGAGTAT 59.645 50.000 0.00 0.00 0.00 2.12
3474 4935 0.522180 ACGTCGCTACAAGTCAGGAG 59.478 55.000 0.00 0.00 0.00 3.69
3476 4937 0.240145 TGACGTCGCTACAAGTCAGG 59.760 55.000 11.62 0.00 38.52 3.86
3481 4942 5.696260 TTTATTGATGACGTCGCTACAAG 57.304 39.130 11.62 0.00 0.00 3.16
3505 4970 8.140677 TCACACAATTCCATGAATTTTGTTTC 57.859 30.769 15.11 0.00 44.93 2.78
3506 4971 8.561212 CATCACACAATTCCATGAATTTTGTTT 58.439 29.630 15.11 6.82 44.93 2.83
3510 4975 8.776470 GTTTCATCACACAATTCCATGAATTTT 58.224 29.630 0.00 0.00 39.82 1.82
3524 4999 0.950116 TGCATGCGTTTCATCACACA 59.050 45.000 14.09 0.00 31.79 3.72
4029 5504 2.456577 TCATCTCGGTCAACTCATCCA 58.543 47.619 0.00 0.00 0.00 3.41
4049 5524 4.020573 TCACAGTCCAACCGAGATACATTT 60.021 41.667 0.00 0.00 0.00 2.32
4066 5550 4.444022 GCAATGTATCCCATCTCTCACAGT 60.444 45.833 0.00 0.00 31.75 3.55
4154 5652 4.394795 CGCTAGATTTTGTAGCACAACAC 58.605 43.478 0.00 0.00 42.69 3.32
4163 5661 5.061808 GTCGAAGAAAGCGCTAGATTTTGTA 59.938 40.000 12.05 0.00 39.69 2.41
4207 5708 2.070654 CTGGGGCGTTGTTTGTCACC 62.071 60.000 0.00 0.00 0.00 4.02
4212 5713 3.989787 GGGCTGGGGCGTTGTTTG 61.990 66.667 0.00 0.00 39.81 2.93
4430 5982 1.815421 GTGTGGCAGTGCGGATAGG 60.815 63.158 9.45 0.00 0.00 2.57
4431 5983 2.167219 CGTGTGGCAGTGCGGATAG 61.167 63.158 9.45 0.00 0.00 2.08
4509 6107 1.218047 CCAAAGATCCTCGACGGCA 59.782 57.895 0.00 0.00 0.00 5.69
4553 6151 0.750546 TCAGTGTAGTAGGCGCGGAT 60.751 55.000 8.83 0.00 0.00 4.18
4913 6516 4.124351 CTTCCGCCGACGCCTGTA 62.124 66.667 0.00 0.00 38.22 2.74
4974 6577 3.914312 TCGTCTGACAAGAAGAATGACC 58.086 45.455 8.73 0.00 37.89 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.