Multiple sequence alignment - TraesCS5B01G393700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G393700 chr5B 100.000 5008 0 0 1 5008 571641992 571636985 0.000000e+00 9249.0
1 TraesCS5B01G393700 chr5B 82.570 1222 194 15 2808 4017 571709546 571708332 0.000000e+00 1059.0
2 TraesCS5B01G393700 chr5B 82.475 1107 154 18 2941 4015 571718441 571717343 0.000000e+00 933.0
3 TraesCS5B01G393700 chr5B 82.600 1023 128 28 1818 2798 571710535 571709521 0.000000e+00 857.0
4 TraesCS5B01G393700 chr5B 76.697 1635 278 72 995 2582 571720239 571718661 0.000000e+00 813.0
5 TraesCS5B01G393700 chr5B 80.184 1085 180 28 2947 4016 571555694 571554630 0.000000e+00 780.0
6 TraesCS5B01G393700 chr5B 80.322 808 119 30 997 1792 571711371 571710592 4.350000e-160 575.0
7 TraesCS5B01G393700 chr5B 76.779 745 120 38 1680 2373 571556878 571556136 7.920000e-98 368.0
8 TraesCS5B01G393700 chr5A 92.561 1519 76 18 521 2009 585074836 585076347 0.000000e+00 2145.0
9 TraesCS5B01G393700 chr5A 87.012 1255 151 10 2881 4128 585077438 585078687 0.000000e+00 1404.0
10 TraesCS5B01G393700 chr5A 91.991 849 57 5 2007 2854 585076606 585077444 0.000000e+00 1181.0
11 TraesCS5B01G393700 chr5A 85.273 1100 156 6 2936 4031 585069715 585070812 0.000000e+00 1129.0
12 TraesCS5B01G393700 chr5A 84.263 1093 150 12 2947 4033 585020390 585021466 0.000000e+00 1046.0
13 TraesCS5B01G393700 chr5A 84.476 992 118 23 1813 2779 585068263 585069243 0.000000e+00 946.0
14 TraesCS5B01G393700 chr5A 90.000 630 43 10 4387 5007 585079345 585079963 0.000000e+00 797.0
15 TraesCS5B01G393700 chr5A 74.074 1674 312 84 997 2580 585213692 585215333 4.350000e-160 575.0
16 TraesCS5B01G393700 chr5A 78.486 925 145 36 1682 2582 585019328 585020222 1.570000e-154 556.0
17 TraesCS5B01G393700 chr5A 82.996 494 73 10 2947 3434 585215574 585216062 2.140000e-118 436.0
18 TraesCS5B01G393700 chr5A 80.790 557 81 19 993 1541 585067467 585068005 3.610000e-111 412.0
19 TraesCS5B01G393700 chr5A 92.549 255 19 0 42 296 454765948 454766202 2.850000e-97 366.0
20 TraesCS5B01G393700 chr5A 86.503 163 16 3 1636 1792 585068047 585068209 1.850000e-39 174.0
21 TraesCS5B01G393700 chr5D 94.882 1016 38 7 1080 2083 464641677 464642690 0.000000e+00 1576.0
22 TraesCS5B01G393700 chr5D 86.911 1253 152 10 2886 4131 464659275 464660522 0.000000e+00 1395.0
23 TraesCS5B01G393700 chr5D 92.757 787 56 1 2066 2851 464658487 464659273 0.000000e+00 1136.0
24 TraesCS5B01G393700 chr5D 84.367 1145 164 13 2893 4031 464619454 464620589 0.000000e+00 1109.0
25 TraesCS5B01G393700 chr5D 84.551 1081 152 11 2941 4015 464605258 464606329 0.000000e+00 1057.0
26 TraesCS5B01G393700 chr5D 87.995 733 42 21 297 992 464634781 464635504 0.000000e+00 824.0
27 TraesCS5B01G393700 chr5D 90.174 631 41 10 4387 5008 464661051 464661669 0.000000e+00 802.0
28 TraesCS5B01G393700 chr5D 80.654 1070 165 26 2947 4010 464817502 464818535 0.000000e+00 791.0
29 TraesCS5B01G393700 chr5D 79.630 918 137 25 1687 2582 464604150 464605039 9.210000e-172 614.0
30 TraesCS5B01G393700 chr5D 84.055 577 48 13 1815 2389 464618490 464619024 2.670000e-142 516.0
31 TraesCS5B01G393700 chr5D 79.966 594 90 17 993 1579 464617393 464617964 1.300000e-110 411.0
32 TraesCS5B01G393700 chr5D 77.596 549 98 15 989 1533 464603466 464603993 4.870000e-80 309.0
33 TraesCS5B01G393700 chr5D 79.167 360 45 19 1680 2010 464816308 464816666 6.530000e-54 222.0
34 TraesCS5B01G393700 chr5D 87.805 164 14 1 1636 1793 464617966 464618129 2.380000e-43 187.0
35 TraesCS5B01G393700 chr5D 85.333 75 8 1 4159 4230 539019591 539019665 1.930000e-09 75.0
36 TraesCS5B01G393700 chr6D 93.359 256 17 0 42 297 159019584 159019839 3.660000e-101 379.0
37 TraesCS5B01G393700 chr6D 95.918 49 2 0 4172 4220 20601086 20601038 4.160000e-11 80.5
38 TraesCS5B01G393700 chr1D 93.254 252 17 0 45 296 481446002 481445751 6.120000e-99 372.0
39 TraesCS5B01G393700 chr1D 92.157 255 20 0 42 296 419214658 419214912 1.330000e-95 361.0
40 TraesCS5B01G393700 chr3D 92.218 257 20 0 42 298 486690617 486690873 1.020000e-96 364.0
41 TraesCS5B01G393700 chr3D 92.095 253 20 0 45 297 486689964 486689712 1.710000e-94 357.0
42 TraesCS5B01G393700 chr4A 91.797 256 19 1 45 298 739878451 739878196 6.170000e-94 355.0
43 TraesCS5B01G393700 chr7A 91.700 253 21 0 45 297 188867943 188867691 7.980000e-93 351.0
44 TraesCS5B01G393700 chr3B 91.188 261 20 3 45 304 344666206 344666464 7.980000e-93 351.0
45 TraesCS5B01G393700 chr6B 94.444 54 3 0 4167 4220 35527827 35527774 3.210000e-12 84.2
46 TraesCS5B01G393700 chr6A 94.444 54 3 0 4167 4220 20520837 20520784 3.210000e-12 84.2
47 TraesCS5B01G393700 chr1B 88.889 63 6 1 4169 4230 553144911 553144849 5.380000e-10 76.8
48 TraesCS5B01G393700 chr7D 92.308 52 3 1 4167 4218 389190483 389190533 6.950000e-09 73.1
49 TraesCS5B01G393700 chr1A 87.302 63 7 1 4169 4230 506545512 506545450 2.500000e-08 71.3
50 TraesCS5B01G393700 chr7B 93.333 45 2 1 4174 4218 384383264 384383307 1.160000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G393700 chr5B 571636985 571641992 5007 True 9249.000000 9249 100.000000 1 5008 1 chr5B.!!$R1 5007
1 TraesCS5B01G393700 chr5B 571717343 571720239 2896 True 873.000000 933 79.586000 995 4015 2 chr5B.!!$R4 3020
2 TraesCS5B01G393700 chr5B 571708332 571711371 3039 True 830.333333 1059 81.830667 997 4017 3 chr5B.!!$R3 3020
3 TraesCS5B01G393700 chr5B 571554630 571556878 2248 True 574.000000 780 78.481500 1680 4016 2 chr5B.!!$R2 2336
4 TraesCS5B01G393700 chr5A 585074836 585079963 5127 False 1381.750000 2145 90.391000 521 5007 4 chr5A.!!$F4 4486
5 TraesCS5B01G393700 chr5A 585019328 585021466 2138 False 801.000000 1046 81.374500 1682 4033 2 chr5A.!!$F2 2351
6 TraesCS5B01G393700 chr5A 585067467 585070812 3345 False 665.250000 1129 84.260500 993 4031 4 chr5A.!!$F3 3038
7 TraesCS5B01G393700 chr5A 585213692 585216062 2370 False 505.500000 575 78.535000 997 3434 2 chr5A.!!$F5 2437
8 TraesCS5B01G393700 chr5D 464641677 464642690 1013 False 1576.000000 1576 94.882000 1080 2083 1 chr5D.!!$F2 1003
9 TraesCS5B01G393700 chr5D 464658487 464661669 3182 False 1111.000000 1395 89.947333 2066 5008 3 chr5D.!!$F6 2942
10 TraesCS5B01G393700 chr5D 464634781 464635504 723 False 824.000000 824 87.995000 297 992 1 chr5D.!!$F1 695
11 TraesCS5B01G393700 chr5D 464603466 464606329 2863 False 660.000000 1057 80.592333 989 4015 3 chr5D.!!$F4 3026
12 TraesCS5B01G393700 chr5D 464617393 464620589 3196 False 555.750000 1109 84.048250 993 4031 4 chr5D.!!$F5 3038
13 TraesCS5B01G393700 chr5D 464816308 464818535 2227 False 506.500000 791 79.910500 1680 4010 2 chr5D.!!$F7 2330

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 0.034896 AATGACGTGTGGGTCTCACC 59.965 55.0 0.00 0.00 45.48 4.02 F
119 120 0.178984 TGACGTGTGGGTCTCACCTA 60.179 55.0 0.00 0.00 45.48 3.08 F
906 949 0.247460 TTGAGATCCTCGTGTGCAGG 59.753 55.0 0.00 0.00 32.35 4.85 F
1516 1575 0.608582 ACGTTGGTCTCGGAGCTACT 60.609 55.0 0.00 0.00 34.70 2.57 F
2885 4196 0.334676 AGGCCTACTCTGAGCTCACT 59.665 55.0 13.74 2.52 0.00 3.41 F
3674 5068 0.108329 CACCCTATGCCGAGTCGTTT 60.108 55.0 12.31 0.00 0.00 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1045 1095 0.106819 GCTCTCCCCAATGCTGACAT 60.107 55.000 0.00 0.00 38.49 3.06 R
1796 1932 1.745141 GCTATCCAGACCAACCTGCAG 60.745 57.143 6.78 6.78 32.97 4.41 R
2866 4177 0.334676 AGTGAGCTCAGAGTAGGCCT 59.665 55.000 18.89 11.78 0.00 5.19 R
3512 4894 0.242825 TCGTCCCTGCGTTTCACTAG 59.757 55.000 0.00 0.00 0.00 2.57 R
3794 5188 0.035534 ATGCGTCCATGGCACTAACA 60.036 50.000 6.96 5.63 44.23 2.41 R
4615 6460 1.133325 TGCCCTGGTTTGTTGTATGGT 60.133 47.619 0.00 0.00 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.266055 GGGACGTTGAGGCTCAGG 59.734 66.667 17.91 15.63 0.00 3.86
36 37 2.435059 GGACGTTGAGGCTCAGGC 60.435 66.667 17.91 9.26 37.82 4.85
51 52 4.980805 GGCCCGTCACGCACAGAA 62.981 66.667 0.00 0.00 0.00 3.02
52 53 3.414700 GCCCGTCACGCACAGAAG 61.415 66.667 0.00 0.00 0.00 2.85
53 54 2.029073 CCCGTCACGCACAGAAGT 59.971 61.111 0.00 0.00 0.00 3.01
54 55 1.594293 CCCGTCACGCACAGAAGTT 60.594 57.895 0.00 0.00 0.00 2.66
55 56 1.564622 CCGTCACGCACAGAAGTTG 59.435 57.895 0.00 0.00 0.00 3.16
56 57 1.151777 CCGTCACGCACAGAAGTTGT 61.152 55.000 0.00 0.00 41.94 3.32
57 58 0.650512 CGTCACGCACAGAAGTTGTT 59.349 50.000 0.00 0.00 38.16 2.83
58 59 1.062002 CGTCACGCACAGAAGTTGTTT 59.938 47.619 0.00 0.00 38.16 2.83
59 60 2.440501 GTCACGCACAGAAGTTGTTTG 58.559 47.619 0.00 0.00 38.16 2.93
60 61 2.080693 TCACGCACAGAAGTTGTTTGT 58.919 42.857 0.00 0.00 38.16 2.83
61 62 2.159585 TCACGCACAGAAGTTGTTTGTG 60.160 45.455 0.00 0.00 43.78 3.33
62 63 2.080693 ACGCACAGAAGTTGTTTGTGA 58.919 42.857 6.71 0.00 43.68 3.58
63 64 2.486203 ACGCACAGAAGTTGTTTGTGAA 59.514 40.909 6.71 0.00 43.68 3.18
64 65 3.057876 ACGCACAGAAGTTGTTTGTGAAA 60.058 39.130 6.71 0.00 43.68 2.69
65 66 3.917380 CGCACAGAAGTTGTTTGTGAAAA 59.083 39.130 13.20 0.00 43.68 2.29
66 67 4.562394 CGCACAGAAGTTGTTTGTGAAAAT 59.438 37.500 13.20 0.00 43.68 1.82
67 68 5.499017 CGCACAGAAGTTGTTTGTGAAAATG 60.499 40.000 13.20 0.00 43.68 2.32
68 69 5.724769 GCACAGAAGTTGTTTGTGAAAATGC 60.725 40.000 13.20 0.00 43.68 3.56
69 70 4.869861 ACAGAAGTTGTTTGTGAAAATGCC 59.130 37.500 0.00 0.00 36.31 4.40
70 71 4.869297 CAGAAGTTGTTTGTGAAAATGCCA 59.131 37.500 0.00 0.00 31.96 4.92
71 72 5.350914 CAGAAGTTGTTTGTGAAAATGCCAA 59.649 36.000 0.00 0.00 31.96 4.52
72 73 5.936956 AGAAGTTGTTTGTGAAAATGCCAAA 59.063 32.000 0.00 0.00 0.00 3.28
73 74 5.544136 AGTTGTTTGTGAAAATGCCAAAC 57.456 34.783 7.37 7.37 45.04 2.93
79 80 7.809226 GTTTGTGAAAATGCCAAACAAAAAT 57.191 28.000 9.02 0.00 44.50 1.82
80 81 8.902040 GTTTGTGAAAATGCCAAACAAAAATA 57.098 26.923 9.02 0.00 44.50 1.40
81 82 9.008289 GTTTGTGAAAATGCCAAACAAAAATAG 57.992 29.630 9.02 0.00 44.50 1.73
82 83 8.498054 TTGTGAAAATGCCAAACAAAAATAGA 57.502 26.923 0.00 0.00 0.00 1.98
83 84 8.140677 TGTGAAAATGCCAAACAAAAATAGAG 57.859 30.769 0.00 0.00 0.00 2.43
84 85 7.984050 TGTGAAAATGCCAAACAAAAATAGAGA 59.016 29.630 0.00 0.00 0.00 3.10
85 86 8.490355 GTGAAAATGCCAAACAAAAATAGAGAG 58.510 33.333 0.00 0.00 0.00 3.20
86 87 8.420222 TGAAAATGCCAAACAAAAATAGAGAGA 58.580 29.630 0.00 0.00 0.00 3.10
87 88 8.822652 AAAATGCCAAACAAAAATAGAGAGAG 57.177 30.769 0.00 0.00 0.00 3.20
88 89 5.964958 TGCCAAACAAAAATAGAGAGAGG 57.035 39.130 0.00 0.00 0.00 3.69
89 90 5.630121 TGCCAAACAAAAATAGAGAGAGGA 58.370 37.500 0.00 0.00 0.00 3.71
90 91 5.707298 TGCCAAACAAAAATAGAGAGAGGAG 59.293 40.000 0.00 0.00 0.00 3.69
91 92 5.124617 GCCAAACAAAAATAGAGAGAGGAGG 59.875 44.000 0.00 0.00 0.00 4.30
92 93 6.476378 CCAAACAAAAATAGAGAGAGGAGGA 58.524 40.000 0.00 0.00 0.00 3.71
93 94 6.942576 CCAAACAAAAATAGAGAGAGGAGGAA 59.057 38.462 0.00 0.00 0.00 3.36
94 95 7.120432 CCAAACAAAAATAGAGAGAGGAGGAAG 59.880 40.741 0.00 0.00 0.00 3.46
95 96 7.560796 AACAAAAATAGAGAGAGGAGGAAGA 57.439 36.000 0.00 0.00 0.00 2.87
96 97 7.560796 ACAAAAATAGAGAGAGGAGGAAGAA 57.439 36.000 0.00 0.00 0.00 2.52
97 98 7.619965 ACAAAAATAGAGAGAGGAGGAAGAAG 58.380 38.462 0.00 0.00 0.00 2.85
98 99 7.456269 ACAAAAATAGAGAGAGGAGGAAGAAGA 59.544 37.037 0.00 0.00 0.00 2.87
99 100 8.317679 CAAAAATAGAGAGAGGAGGAAGAAGAA 58.682 37.037 0.00 0.00 0.00 2.52
100 101 8.622572 AAAATAGAGAGAGGAGGAAGAAGAAT 57.377 34.615 0.00 0.00 0.00 2.40
101 102 7.601705 AATAGAGAGAGGAGGAAGAAGAATG 57.398 40.000 0.00 0.00 0.00 2.67
102 103 5.205517 AGAGAGAGGAGGAAGAAGAATGA 57.794 43.478 0.00 0.00 0.00 2.57
103 104 4.956075 AGAGAGAGGAGGAAGAAGAATGAC 59.044 45.833 0.00 0.00 0.00 3.06
104 105 3.699038 AGAGAGGAGGAAGAAGAATGACG 59.301 47.826 0.00 0.00 0.00 4.35
105 106 3.436243 AGAGGAGGAAGAAGAATGACGT 58.564 45.455 0.00 0.00 0.00 4.34
106 107 3.194542 AGAGGAGGAAGAAGAATGACGTG 59.805 47.826 0.00 0.00 0.00 4.49
107 108 2.900546 AGGAGGAAGAAGAATGACGTGT 59.099 45.455 0.00 0.00 0.00 4.49
108 109 2.996621 GGAGGAAGAAGAATGACGTGTG 59.003 50.000 0.00 0.00 0.00 3.82
109 110 2.996621 GAGGAAGAAGAATGACGTGTGG 59.003 50.000 0.00 0.00 0.00 4.17
110 111 2.076863 GGAAGAAGAATGACGTGTGGG 58.923 52.381 0.00 0.00 0.00 4.61
111 112 2.550208 GGAAGAAGAATGACGTGTGGGT 60.550 50.000 0.00 0.00 0.00 4.51
112 113 2.457366 AGAAGAATGACGTGTGGGTC 57.543 50.000 0.00 0.00 37.45 4.46
113 114 1.971357 AGAAGAATGACGTGTGGGTCT 59.029 47.619 0.00 0.00 37.81 3.85
114 115 2.028930 AGAAGAATGACGTGTGGGTCTC 60.029 50.000 0.00 0.00 37.81 3.36
115 116 1.338107 AGAATGACGTGTGGGTCTCA 58.662 50.000 0.00 0.00 37.81 3.27
116 117 1.000955 AGAATGACGTGTGGGTCTCAC 59.999 52.381 0.00 0.00 46.23 3.51
117 118 0.034896 AATGACGTGTGGGTCTCACC 59.965 55.000 0.00 0.00 45.48 4.02
118 119 0.832135 ATGACGTGTGGGTCTCACCT 60.832 55.000 0.00 0.00 45.48 4.00
119 120 0.178984 TGACGTGTGGGTCTCACCTA 60.179 55.000 0.00 0.00 45.48 3.08
120 121 1.183549 GACGTGTGGGTCTCACCTAT 58.816 55.000 0.00 0.00 45.48 2.57
121 122 2.291089 TGACGTGTGGGTCTCACCTATA 60.291 50.000 0.00 0.00 45.48 1.31
122 123 2.756760 GACGTGTGGGTCTCACCTATAA 59.243 50.000 0.00 0.00 45.48 0.98
123 124 3.371965 ACGTGTGGGTCTCACCTATAAT 58.628 45.455 0.00 0.00 45.48 1.28
124 125 4.539726 ACGTGTGGGTCTCACCTATAATA 58.460 43.478 0.00 0.00 45.48 0.98
125 126 4.957954 ACGTGTGGGTCTCACCTATAATAA 59.042 41.667 0.00 0.00 45.48 1.40
126 127 5.163478 ACGTGTGGGTCTCACCTATAATAAC 60.163 44.000 0.00 0.00 45.48 1.89
127 128 5.287226 GTGTGGGTCTCACCTATAATAACG 58.713 45.833 0.00 0.00 45.48 3.18
128 129 4.342951 TGTGGGTCTCACCTATAATAACGG 59.657 45.833 0.00 0.00 45.48 4.44
129 130 4.343239 GTGGGTCTCACCTATAATAACGGT 59.657 45.833 0.00 0.00 40.39 4.83
130 131 4.586001 TGGGTCTCACCTATAATAACGGTC 59.414 45.833 0.00 0.00 38.64 4.79
131 132 4.586001 GGGTCTCACCTATAATAACGGTCA 59.414 45.833 0.00 0.00 38.64 4.02
132 133 5.069516 GGGTCTCACCTATAATAACGGTCAA 59.930 44.000 0.00 0.00 38.64 3.18
133 134 5.981915 GGTCTCACCTATAATAACGGTCAAC 59.018 44.000 0.00 0.00 34.73 3.18
134 135 6.183360 GGTCTCACCTATAATAACGGTCAACT 60.183 42.308 0.00 0.00 34.73 3.16
135 136 6.696148 GTCTCACCTATAATAACGGTCAACTG 59.304 42.308 0.00 0.00 0.00 3.16
136 137 6.604396 TCTCACCTATAATAACGGTCAACTGA 59.396 38.462 0.00 0.00 0.00 3.41
137 138 7.123098 TCTCACCTATAATAACGGTCAACTGAA 59.877 37.037 0.00 0.00 0.00 3.02
138 139 7.037438 TCACCTATAATAACGGTCAACTGAAC 58.963 38.462 0.00 0.00 0.00 3.18
146 147 1.658994 GGTCAACTGAACGGTCAACA 58.341 50.000 3.93 0.00 31.88 3.33
147 148 2.218603 GGTCAACTGAACGGTCAACAT 58.781 47.619 3.93 0.00 31.88 2.71
148 149 2.032030 GGTCAACTGAACGGTCAACATG 60.032 50.000 3.93 3.96 31.88 3.21
149 150 2.612212 GTCAACTGAACGGTCAACATGT 59.388 45.455 3.93 0.00 31.88 3.21
150 151 3.064820 GTCAACTGAACGGTCAACATGTT 59.935 43.478 3.93 4.92 31.88 2.71
151 152 3.692101 TCAACTGAACGGTCAACATGTTT 59.308 39.130 8.77 0.00 31.88 2.83
152 153 4.876679 TCAACTGAACGGTCAACATGTTTA 59.123 37.500 8.77 0.00 31.88 2.01
153 154 5.354513 TCAACTGAACGGTCAACATGTTTAA 59.645 36.000 8.77 0.00 31.88 1.52
154 155 5.821516 ACTGAACGGTCAACATGTTTAAA 57.178 34.783 8.77 0.00 31.88 1.52
155 156 6.385649 ACTGAACGGTCAACATGTTTAAAT 57.614 33.333 8.77 0.00 31.88 1.40
156 157 6.435428 ACTGAACGGTCAACATGTTTAAATC 58.565 36.000 8.77 3.90 31.88 2.17
157 158 6.038825 ACTGAACGGTCAACATGTTTAAATCA 59.961 34.615 8.77 8.11 31.88 2.57
158 159 6.976088 TGAACGGTCAACATGTTTAAATCAT 58.024 32.000 8.77 0.00 0.00 2.45
159 160 7.429633 TGAACGGTCAACATGTTTAAATCATT 58.570 30.769 8.77 0.00 0.00 2.57
160 161 7.923344 TGAACGGTCAACATGTTTAAATCATTT 59.077 29.630 8.77 0.00 0.00 2.32
161 162 9.400638 GAACGGTCAACATGTTTAAATCATTTA 57.599 29.630 8.77 0.00 0.00 1.40
162 163 9.751542 AACGGTCAACATGTTTAAATCATTTAA 57.248 25.926 8.77 0.00 33.56 1.52
163 164 9.751542 ACGGTCAACATGTTTAAATCATTTAAA 57.248 25.926 8.77 10.71 41.40 1.52
178 179 8.918202 AATCATTTAAACCGGCTATTATCTGA 57.082 30.769 0.00 5.69 0.00 3.27
179 180 8.918202 ATCATTTAAACCGGCTATTATCTGAA 57.082 30.769 0.00 0.00 0.00 3.02
180 181 8.740123 TCATTTAAACCGGCTATTATCTGAAA 57.260 30.769 0.00 0.00 0.00 2.69
181 182 9.179909 TCATTTAAACCGGCTATTATCTGAAAA 57.820 29.630 0.00 0.00 0.00 2.29
182 183 9.965824 CATTTAAACCGGCTATTATCTGAAAAT 57.034 29.630 0.00 0.00 0.00 1.82
183 184 9.965824 ATTTAAACCGGCTATTATCTGAAAATG 57.034 29.630 0.00 0.00 0.00 2.32
184 185 6.391227 AAACCGGCTATTATCTGAAAATGG 57.609 37.500 0.00 0.00 0.00 3.16
185 186 5.048846 ACCGGCTATTATCTGAAAATGGT 57.951 39.130 0.00 0.00 0.00 3.55
186 187 6.182507 ACCGGCTATTATCTGAAAATGGTA 57.817 37.500 0.00 0.00 0.00 3.25
187 188 6.231211 ACCGGCTATTATCTGAAAATGGTAG 58.769 40.000 0.00 0.00 0.00 3.18
188 189 6.183361 ACCGGCTATTATCTGAAAATGGTAGT 60.183 38.462 0.00 0.00 0.00 2.73
189 190 6.710744 CCGGCTATTATCTGAAAATGGTAGTT 59.289 38.462 0.00 0.00 0.00 2.24
190 191 7.228706 CCGGCTATTATCTGAAAATGGTAGTTT 59.771 37.037 0.00 0.00 0.00 2.66
191 192 8.621286 CGGCTATTATCTGAAAATGGTAGTTTT 58.379 33.333 0.00 0.00 34.19 2.43
199 200 8.740123 TCTGAAAATGGTAGTTTTTAGTCACA 57.260 30.769 0.00 0.00 36.57 3.58
200 201 9.179909 TCTGAAAATGGTAGTTTTTAGTCACAA 57.820 29.630 0.00 0.00 36.57 3.33
201 202 9.796120 CTGAAAATGGTAGTTTTTAGTCACAAA 57.204 29.630 0.00 0.00 32.88 2.83
227 228 7.933728 TTAAGAATTTTTGGTAGTTTTCGGC 57.066 32.000 0.00 0.00 0.00 5.54
228 229 4.878439 AGAATTTTTGGTAGTTTTCGGCC 58.122 39.130 0.00 0.00 0.00 6.13
229 230 4.342665 AGAATTTTTGGTAGTTTTCGGCCA 59.657 37.500 2.24 0.00 0.00 5.36
230 231 4.882842 ATTTTTGGTAGTTTTCGGCCAT 57.117 36.364 2.24 0.00 0.00 4.40
231 232 4.674281 TTTTTGGTAGTTTTCGGCCATT 57.326 36.364 2.24 0.00 0.00 3.16
232 233 4.674281 TTTTGGTAGTTTTCGGCCATTT 57.326 36.364 2.24 0.00 0.00 2.32
233 234 4.674281 TTTGGTAGTTTTCGGCCATTTT 57.326 36.364 2.24 0.00 0.00 1.82
234 235 4.674281 TTGGTAGTTTTCGGCCATTTTT 57.326 36.364 2.24 0.00 0.00 1.94
256 257 6.702716 TTTAAAAAGTGGTAGTTCTGTGGG 57.297 37.500 0.00 0.00 0.00 4.61
257 258 4.513406 AAAAAGTGGTAGTTCTGTGGGA 57.487 40.909 0.00 0.00 0.00 4.37
258 259 3.487120 AAAGTGGTAGTTCTGTGGGAC 57.513 47.619 0.00 0.00 0.00 4.46
259 260 2.097110 AGTGGTAGTTCTGTGGGACA 57.903 50.000 0.00 0.00 0.00 4.02
260 261 2.404559 AGTGGTAGTTCTGTGGGACAA 58.595 47.619 0.00 0.00 44.16 3.18
261 262 2.775384 AGTGGTAGTTCTGTGGGACAAA 59.225 45.455 0.00 0.00 44.16 2.83
262 263 3.201266 AGTGGTAGTTCTGTGGGACAAAA 59.799 43.478 0.00 0.00 44.16 2.44
263 264 3.949113 GTGGTAGTTCTGTGGGACAAAAA 59.051 43.478 0.00 0.00 44.16 1.94
264 265 3.949113 TGGTAGTTCTGTGGGACAAAAAC 59.051 43.478 0.00 0.00 44.16 2.43
265 266 3.317149 GGTAGTTCTGTGGGACAAAAACC 59.683 47.826 0.00 0.00 44.16 3.27
266 267 2.384828 AGTTCTGTGGGACAAAAACCC 58.615 47.619 0.00 0.00 44.16 4.11
267 268 1.411246 GTTCTGTGGGACAAAAACCCC 59.589 52.381 0.00 0.00 46.21 4.95
268 269 0.930726 TCTGTGGGACAAAAACCCCT 59.069 50.000 0.00 0.00 46.21 4.79
269 270 2.136863 TCTGTGGGACAAAAACCCCTA 58.863 47.619 0.00 0.00 46.21 3.53
270 271 2.514582 TCTGTGGGACAAAAACCCCTAA 59.485 45.455 0.00 0.00 46.21 2.69
271 272 3.052793 TCTGTGGGACAAAAACCCCTAAA 60.053 43.478 0.00 0.00 46.21 1.85
272 273 3.301274 TGTGGGACAAAAACCCCTAAAG 58.699 45.455 0.00 0.00 46.21 1.85
273 274 3.302161 GTGGGACAAAAACCCCTAAAGT 58.698 45.455 0.00 0.00 46.21 2.66
274 275 3.069016 GTGGGACAAAAACCCCTAAAGTG 59.931 47.826 0.00 0.00 46.21 3.16
275 276 3.052793 TGGGACAAAAACCCCTAAAGTGA 60.053 43.478 0.00 0.00 46.21 3.41
276 277 4.157246 GGGACAAAAACCCCTAAAGTGAT 58.843 43.478 0.00 0.00 41.38 3.06
277 278 5.162969 TGGGACAAAAACCCCTAAAGTGATA 60.163 40.000 0.00 0.00 46.21 2.15
278 279 5.417894 GGGACAAAAACCCCTAAAGTGATAG 59.582 44.000 0.00 0.00 41.38 2.08
279 280 6.008331 GGACAAAAACCCCTAAAGTGATAGT 58.992 40.000 0.00 0.00 0.00 2.12
280 281 6.492429 GGACAAAAACCCCTAAAGTGATAGTT 59.508 38.462 0.00 0.00 0.00 2.24
281 282 7.014905 GGACAAAAACCCCTAAAGTGATAGTTT 59.985 37.037 0.00 0.00 0.00 2.66
282 283 8.313944 ACAAAAACCCCTAAAGTGATAGTTTT 57.686 30.769 0.00 0.00 37.50 2.43
283 284 8.764558 ACAAAAACCCCTAAAGTGATAGTTTTT 58.235 29.630 0.00 0.00 43.11 1.94
305 306 5.689383 TTGTCAAACACTCTCCAAATAGC 57.311 39.130 0.00 0.00 0.00 2.97
306 307 4.973168 TGTCAAACACTCTCCAAATAGCT 58.027 39.130 0.00 0.00 0.00 3.32
370 371 2.882324 CGAGGGAGAAAAGAGTAGCAC 58.118 52.381 0.00 0.00 0.00 4.40
385 386 2.919666 AGCACCACGAATAACATTGC 57.080 45.000 0.00 0.00 0.00 3.56
391 392 3.119173 ACCACGAATAACATTGCCAATGG 60.119 43.478 20.77 4.51 43.21 3.16
415 416 5.352284 CGCTGTTAGGACAAAGATCAGTAT 58.648 41.667 0.00 0.00 34.85 2.12
424 425 7.568349 AGGACAAAGATCAGTATCAAGCATTA 58.432 34.615 0.00 0.00 34.28 1.90
426 427 7.239166 ACAAAGATCAGTATCAAGCATTACG 57.761 36.000 0.00 0.00 34.28 3.18
428 429 4.948847 AGATCAGTATCAAGCATTACGCA 58.051 39.130 0.00 0.00 37.60 5.24
441 442 3.649073 CATTACGCATACCGATCTCCAA 58.351 45.455 0.00 0.00 41.02 3.53
446 447 2.872245 CGCATACCGATCTCCAAACAAT 59.128 45.455 0.00 0.00 40.02 2.71
453 454 3.561725 CCGATCTCCAAACAATTCTAGCC 59.438 47.826 0.00 0.00 0.00 3.93
459 460 2.493278 CCAAACAATTCTAGCCACAGGG 59.507 50.000 0.00 0.00 37.18 4.45
479 480 3.370672 GGGCAAGTGAAAAACAAGTGTTG 59.629 43.478 0.00 0.00 38.44 3.33
502 503 8.621286 GTTGAGAAGATTCTTCCTCTCTACTAG 58.379 40.741 20.28 0.00 39.78 2.57
513 516 9.629878 TCTTCCTCTCTACTAGTAGTAATTTGG 57.370 37.037 25.58 19.09 34.84 3.28
530 533 2.263895 TGGTGTGGGTTAGGCTCTAT 57.736 50.000 0.00 0.00 0.00 1.98
535 538 3.134804 GTGTGGGTTAGGCTCTATCATGT 59.865 47.826 0.00 0.00 0.00 3.21
542 545 6.166982 GGTTAGGCTCTATCATGTATTGACC 58.833 44.000 0.00 0.00 37.11 4.02
563 566 2.848887 CGATTCACGTGTGATCAGACTC 59.151 50.000 19.64 9.69 39.64 3.36
572 575 5.294799 ACGTGTGATCAGACTCTACTCATAC 59.705 44.000 19.64 6.76 0.00 2.39
575 578 7.306925 CGTGTGATCAGACTCTACTCATACTAC 60.307 44.444 19.64 0.00 0.00 2.73
615 648 3.282021 TGGACGGTATGTGTAGGAGTAC 58.718 50.000 0.00 0.00 0.00 2.73
616 649 2.289002 GGACGGTATGTGTAGGAGTACG 59.711 54.545 0.00 0.00 30.95 3.67
617 650 2.939103 GACGGTATGTGTAGGAGTACGT 59.061 50.000 0.00 0.00 30.95 3.57
618 651 4.119862 GACGGTATGTGTAGGAGTACGTA 58.880 47.826 0.00 0.00 30.95 3.57
672 705 4.730949 AACAACTAGTTAGCCAGCGATA 57.269 40.909 8.04 0.00 39.09 2.92
681 714 2.016704 GCCAGCGATATCGTCCACG 61.017 63.158 24.99 10.39 42.22 4.94
852 895 2.158959 GGTCCACTCGTGCGAATCG 61.159 63.158 0.00 0.00 0.00 3.34
903 946 2.593346 ATCTTGAGATCCTCGTGTGC 57.407 50.000 0.00 0.00 32.35 4.57
905 948 1.203287 TCTTGAGATCCTCGTGTGCAG 59.797 52.381 0.00 0.00 32.35 4.41
906 949 0.247460 TTGAGATCCTCGTGTGCAGG 59.753 55.000 0.00 0.00 32.35 4.85
949 992 2.165998 AGAGCAGCCATTGTTTCCTTC 58.834 47.619 0.00 0.00 0.00 3.46
966 1013 3.021695 CCTTCCATGACATGACATGCTT 58.978 45.455 26.35 4.26 44.11 3.91
1035 1085 0.853530 AGGCCACCTTTGTTCTCCTT 59.146 50.000 5.01 0.00 0.00 3.36
1045 1095 3.701205 TTGTTCTCCTTATGCTCTGCA 57.299 42.857 0.00 0.00 44.86 4.41
1141 1191 4.770362 TCGGCCGGATGACCCTCA 62.770 66.667 27.83 0.00 0.00 3.86
1188 1238 1.471119 TCGAGAGGATAAACGCCACT 58.529 50.000 0.00 0.00 0.00 4.00
1260 1314 2.092524 CGCTAAAACATGTGCAAATGGC 59.907 45.455 20.95 12.54 45.13 4.40
1429 1488 2.366972 ACCCGCCTAGGCATTCCT 60.367 61.111 32.47 7.55 46.57 3.36
1516 1575 0.608582 ACGTTGGTCTCGGAGCTACT 60.609 55.000 0.00 0.00 34.70 2.57
1587 1713 6.486320 TGTATATTACGTCGATAGGGTGTGAA 59.514 38.462 0.00 0.00 0.00 3.18
1775 1911 4.449068 CCATACGTCTTTGCTCCATGTATC 59.551 45.833 0.00 0.00 0.00 2.24
1796 1932 7.646526 TGTATCGCGGTAATAGATAATACATGC 59.353 37.037 6.13 0.00 0.00 4.06
1824 1981 4.096984 GGTTGGTCTGGATAGCAAAGATTG 59.903 45.833 0.00 0.00 38.48 2.67
1826 1983 5.692115 TGGTCTGGATAGCAAAGATTGTA 57.308 39.130 0.00 0.00 0.00 2.41
1917 2416 5.957771 TGAAAGCTATAGTGAAGACCCAT 57.042 39.130 0.84 0.00 0.00 4.00
2366 3181 3.004734 AGAACAAGCTCAAATTTCGGGTG 59.995 43.478 0.00 0.00 0.00 4.61
2396 3230 4.224594 TCATTCTGGCAGAAGATGTCTCTT 59.775 41.667 31.17 11.66 44.53 2.85
2413 3247 9.601217 GATGTCTCTTCCTAGCTATTTGTTTTA 57.399 33.333 0.00 0.00 0.00 1.52
2477 3317 4.443598 GGGAATTTGTGCAAACAGGGTTTA 60.444 41.667 0.00 0.00 32.51 2.01
2601 3542 3.152341 AGCCAAGTCCAATCAACTTCTG 58.848 45.455 0.00 0.00 34.79 3.02
2615 3556 3.160777 ACTTCTGTCGACAAAACTCGT 57.839 42.857 20.49 4.42 35.10 4.18
2616 3557 3.518590 ACTTCTGTCGACAAAACTCGTT 58.481 40.909 20.49 0.00 35.10 3.85
2654 3614 3.965888 AGGATGTTCCTTGTCTGGC 57.034 52.632 0.00 0.00 46.91 4.85
2679 3643 9.241317 GCTATGATACATCCTTGAAAATTGTTG 57.759 33.333 0.00 0.00 0.00 3.33
2736 3712 9.929180 TTTCTACAATAGCTACTTGCCATATAG 57.071 33.333 0.00 1.13 44.23 1.31
2737 3713 8.067751 TCTACAATAGCTACTTGCCATATAGG 57.932 38.462 0.00 0.00 44.23 2.57
2738 3714 6.688073 ACAATAGCTACTTGCCATATAGGT 57.312 37.500 0.00 0.00 44.23 3.08
2739 3715 7.792364 ACAATAGCTACTTGCCATATAGGTA 57.208 36.000 0.00 0.00 44.23 3.08
2740 3716 7.841956 ACAATAGCTACTTGCCATATAGGTAG 58.158 38.462 0.00 0.00 44.23 3.18
2741 3717 7.674348 ACAATAGCTACTTGCCATATAGGTAGA 59.326 37.037 0.00 0.00 44.23 2.59
2742 3718 5.986501 AGCTACTTGCCATATAGGTAGAC 57.013 43.478 0.00 0.00 44.23 2.59
2743 3719 5.394738 AGCTACTTGCCATATAGGTAGACA 58.605 41.667 0.00 0.00 44.23 3.41
2744 3720 6.019748 AGCTACTTGCCATATAGGTAGACAT 58.980 40.000 0.00 0.00 44.23 3.06
2855 4166 6.523035 TCAATAGAGTACTCCCTCTCTCAT 57.477 41.667 19.38 0.00 40.92 2.90
2858 4169 3.815809 AGAGTACTCCCTCTCTCATTCG 58.184 50.000 19.38 0.00 37.20 3.34
2859 4170 2.292292 GAGTACTCCCTCTCTCATTCGC 59.708 54.545 12.13 0.00 0.00 4.70
2860 4171 2.025155 GTACTCCCTCTCTCATTCGCA 58.975 52.381 0.00 0.00 0.00 5.10
2861 4172 1.561643 ACTCCCTCTCTCATTCGCAA 58.438 50.000 0.00 0.00 0.00 4.85
2862 4173 1.902508 ACTCCCTCTCTCATTCGCAAA 59.097 47.619 0.00 0.00 0.00 3.68
2863 4174 2.303022 ACTCCCTCTCTCATTCGCAAAA 59.697 45.455 0.00 0.00 0.00 2.44
2864 4175 3.244561 ACTCCCTCTCTCATTCGCAAAAA 60.245 43.478 0.00 0.00 0.00 1.94
2882 4193 3.342377 AAAAAGGCCTACTCTGAGCTC 57.658 47.619 5.16 6.82 0.00 4.09
2883 4194 1.944177 AAAGGCCTACTCTGAGCTCA 58.056 50.000 17.19 17.19 0.00 4.26
2884 4195 1.190643 AAGGCCTACTCTGAGCTCAC 58.809 55.000 13.74 0.38 0.00 3.51
2885 4196 0.334676 AGGCCTACTCTGAGCTCACT 59.665 55.000 13.74 2.52 0.00 3.41
2886 4197 0.744281 GGCCTACTCTGAGCTCACTC 59.256 60.000 13.74 0.00 43.76 3.51
2887 4198 1.684869 GGCCTACTCTGAGCTCACTCT 60.685 57.143 13.74 0.00 43.85 3.24
2888 4199 2.422235 GGCCTACTCTGAGCTCACTCTA 60.422 54.545 13.74 0.90 43.85 2.43
2889 4200 3.486383 GCCTACTCTGAGCTCACTCTAT 58.514 50.000 13.74 0.00 43.85 1.98
2890 4201 3.253188 GCCTACTCTGAGCTCACTCTATG 59.747 52.174 13.74 1.68 43.85 2.23
2891 4202 4.713553 CCTACTCTGAGCTCACTCTATGA 58.286 47.826 13.74 6.62 43.85 2.15
3136 4480 1.001633 GGTGAACTCGGGAAGCAAGTA 59.998 52.381 0.00 0.00 0.00 2.24
3182 4552 9.730705 TCTTTCTCTCACACTTCATTCATTAAT 57.269 29.630 0.00 0.00 0.00 1.40
3404 4780 3.209410 GACAATCGAATGGCAAGGAGAT 58.791 45.455 0.08 0.00 0.00 2.75
3408 4784 2.115427 TCGAATGGCAAGGAGATACCA 58.885 47.619 0.00 0.00 42.04 3.25
3487 4869 7.440523 AATTTGGAGTAGAGTTGTTGATCAC 57.559 36.000 0.00 0.00 0.00 3.06
3493 4875 6.365970 AGTAGAGTTGTTGATCACTGGAAT 57.634 37.500 0.00 0.00 0.00 3.01
3560 4954 2.100631 GGCGATCAAGTCCACCGTG 61.101 63.158 0.00 0.00 0.00 4.94
3578 4972 2.745037 GACCCCAACACGCAGGTA 59.255 61.111 0.00 0.00 31.10 3.08
3587 4981 1.617322 ACACGCAGGTAGTCTTCTCA 58.383 50.000 0.00 0.00 0.00 3.27
3635 5029 0.456312 GCAGCAAGTACGACTACGCT 60.456 55.000 0.00 0.00 43.96 5.07
3669 5063 2.365635 AGCCACCCTATGCCGAGT 60.366 61.111 0.00 0.00 0.00 4.18
3674 5068 0.108329 CACCCTATGCCGAGTCGTTT 60.108 55.000 12.31 0.00 0.00 3.60
3702 5096 1.697432 ACTTGAACTTGACGATCCCCA 59.303 47.619 0.00 0.00 0.00 4.96
3729 5123 1.866015 CCCTGTGGTGATCCAGACTA 58.134 55.000 0.00 0.00 45.24 2.59
3752 5146 3.144506 CTGCAAGAGGATCAAGTGTGTT 58.855 45.455 0.00 0.00 37.82 3.32
3794 5188 1.735376 CGCTAGTGGTGGAGCCGTAT 61.735 60.000 0.00 0.00 41.21 3.06
3795 5189 0.249489 GCTAGTGGTGGAGCCGTATG 60.249 60.000 0.00 0.00 41.21 2.39
3798 5192 1.563924 AGTGGTGGAGCCGTATGTTA 58.436 50.000 0.00 0.00 41.21 2.41
3812 5206 0.035534 ATGTTAGTGCCATGGACGCA 60.036 50.000 18.40 2.92 0.00 5.24
3815 5209 1.093972 TTAGTGCCATGGACGCATTG 58.906 50.000 18.40 0.00 38.76 2.82
3860 5254 3.717294 GGCCAGGGTGTCACCGAT 61.717 66.667 15.93 4.22 39.83 4.18
3875 5269 2.387309 CGATGTGCTCTTCGGCAAT 58.613 52.632 14.26 0.00 44.18 3.56
3971 5365 2.288666 CACTATGACCCATTGTTCCCG 58.711 52.381 0.00 0.00 28.44 5.14
3974 5368 2.302587 ATGACCCATTGTTCCCGTTT 57.697 45.000 0.00 0.00 0.00 3.60
4004 5398 0.250553 TCACCACGGAGGCGAAAAAT 60.251 50.000 0.00 0.00 43.14 1.82
4017 5411 2.035321 GCGAAAAATTGAGTGGGGTGAA 59.965 45.455 0.00 0.00 0.00 3.18
4033 5427 5.208121 GGGGTGAAATAATTGAGATGGGAA 58.792 41.667 0.00 0.00 0.00 3.97
4045 5439 3.772572 TGAGATGGGAAGAATGACGGTTA 59.227 43.478 0.00 0.00 0.00 2.85
4052 5446 4.439057 GGAAGAATGACGGTTAGTATGCA 58.561 43.478 0.00 0.00 0.00 3.96
4059 5453 6.650427 ATGACGGTTAGTATGCAAGAGATA 57.350 37.500 0.00 0.00 0.00 1.98
4065 5459 8.857098 ACGGTTAGTATGCAAGAGATAAGATTA 58.143 33.333 0.00 0.00 0.00 1.75
4112 5507 0.537143 TAGGGGCGCATGGCTTTATG 60.537 55.000 10.83 0.00 42.94 1.90
4123 5518 6.237942 GCGCATGGCTTTATGTATCTACTATG 60.238 42.308 0.30 0.00 39.11 2.23
4154 5549 9.635404 ACTCTTTATCTACTACTGCTATCAACT 57.365 33.333 0.00 0.00 0.00 3.16
4166 5561 9.347934 CTACTGCTATCAACTATGTATACTTGC 57.652 37.037 4.17 0.00 0.00 4.01
4167 5562 7.957002 ACTGCTATCAACTATGTATACTTGCT 58.043 34.615 4.17 0.00 0.00 3.91
4169 5564 9.914131 CTGCTATCAACTATGTATACTTGCTTA 57.086 33.333 4.17 0.00 0.00 3.09
4206 5746 3.949754 TGGTGAATCCAAATGATCTGAGC 59.050 43.478 0.00 0.00 44.12 4.26
4210 5750 4.825634 TGAATCCAAATGATCTGAGCCATC 59.174 41.667 0.00 0.00 31.61 3.51
4211 5751 3.219176 TCCAAATGATCTGAGCCATCC 57.781 47.619 0.00 0.00 0.00 3.51
4212 5752 2.510800 TCCAAATGATCTGAGCCATCCA 59.489 45.455 0.00 0.00 0.00 3.41
4214 5754 3.895656 CCAAATGATCTGAGCCATCCAAT 59.104 43.478 0.00 0.00 0.00 3.16
4220 5760 1.211212 TCTGAGCCATCCAATCACCTG 59.789 52.381 0.00 0.00 0.00 4.00
4221 5761 0.256752 TGAGCCATCCAATCACCTGG 59.743 55.000 0.00 0.00 37.87 4.45
4228 5768 1.838112 TCCAATCACCTGGATGCAAC 58.162 50.000 0.00 0.00 40.71 4.17
4230 5770 0.452987 CAATCACCTGGATGCAACGG 59.547 55.000 0.00 0.00 36.02 4.44
4232 5772 3.443045 CACCTGGATGCAACGGGC 61.443 66.667 17.05 0.00 45.13 6.13
4234 5774 4.738998 CCTGGATGCAACGGGCCA 62.739 66.667 4.39 1.82 43.89 5.36
4236 5776 2.676121 TGGATGCAACGGGCCAAG 60.676 61.111 4.39 0.00 43.89 3.61
4249 5789 3.102090 GCCAAGGCCTCTTGTATCC 57.898 57.895 5.23 0.00 46.65 2.59
4250 5790 0.548510 GCCAAGGCCTCTTGTATCCT 59.451 55.000 5.23 0.00 46.65 3.24
4251 5791 1.768870 GCCAAGGCCTCTTGTATCCTA 59.231 52.381 5.23 0.00 46.65 2.94
4252 5792 2.373502 GCCAAGGCCTCTTGTATCCTAT 59.626 50.000 5.23 0.00 46.65 2.57
4254 5794 3.406764 CAAGGCCTCTTGTATCCTATGC 58.593 50.000 5.23 0.00 43.92 3.14
4256 5796 1.338200 GGCCTCTTGTATCCTATGCCG 60.338 57.143 0.00 0.00 0.00 5.69
4258 5798 2.353208 GCCTCTTGTATCCTATGCCGAG 60.353 54.545 0.00 0.00 0.00 4.63
4261 5801 2.628178 TCTTGTATCCTATGCCGAGGTG 59.372 50.000 1.19 0.00 37.88 4.00
4262 5802 0.679505 TGTATCCTATGCCGAGGTGC 59.320 55.000 1.19 0.00 37.88 5.01
4263 5803 0.388649 GTATCCTATGCCGAGGTGCG 60.389 60.000 1.19 0.00 37.88 5.34
4272 5812 2.179517 CGAGGTGCGGTCTCTGTC 59.820 66.667 0.00 0.00 36.03 3.51
4273 5813 2.179517 GAGGTGCGGTCTCTGTCG 59.820 66.667 0.00 0.00 0.00 4.35
4281 5821 2.807045 GTCTCTGTCGCAGCGGTG 60.807 66.667 16.42 10.98 0.00 4.94
4282 5822 3.295273 TCTCTGTCGCAGCGGTGT 61.295 61.111 16.42 0.00 0.00 4.16
4283 5823 3.108289 CTCTGTCGCAGCGGTGTG 61.108 66.667 21.60 21.60 35.31 3.82
4284 5824 3.558099 CTCTGTCGCAGCGGTGTGA 62.558 63.158 25.66 25.66 41.01 3.58
4286 5826 2.661537 TGTCGCAGCGGTGTGAAG 60.662 61.111 30.19 12.85 44.79 3.02
4292 5832 4.927782 AGCGGTGTGAAGGCGCAA 62.928 61.111 10.83 0.00 36.08 4.85
4293 5833 3.737172 GCGGTGTGAAGGCGCAAT 61.737 61.111 10.83 0.00 36.08 3.56
4294 5834 2.176546 CGGTGTGAAGGCGCAATG 59.823 61.111 10.83 0.00 36.08 2.82
4295 5835 2.126346 GGTGTGAAGGCGCAATGC 60.126 61.111 10.83 0.00 45.38 3.56
4311 5851 3.072476 GCAACTCTGCTCTCCCCA 58.928 61.111 0.00 0.00 45.74 4.96
4312 5852 1.606531 GCAACTCTGCTCTCCCCAT 59.393 57.895 0.00 0.00 45.74 4.00
4313 5853 0.463474 GCAACTCTGCTCTCCCCATC 60.463 60.000 0.00 0.00 45.74 3.51
4314 5854 1.202330 CAACTCTGCTCTCCCCATCT 58.798 55.000 0.00 0.00 0.00 2.90
4315 5855 2.392662 CAACTCTGCTCTCCCCATCTA 58.607 52.381 0.00 0.00 0.00 1.98
4316 5856 2.364970 CAACTCTGCTCTCCCCATCTAG 59.635 54.545 0.00 0.00 0.00 2.43
4317 5857 1.856259 ACTCTGCTCTCCCCATCTAGA 59.144 52.381 0.00 0.00 0.00 2.43
4318 5858 2.450500 ACTCTGCTCTCCCCATCTAGAT 59.549 50.000 0.00 0.00 0.00 1.98
4319 5859 2.827322 CTCTGCTCTCCCCATCTAGATG 59.173 54.545 23.53 23.53 38.51 2.90
4321 5861 1.132913 TGCTCTCCCCATCTAGATGCT 60.133 52.381 24.81 0.00 37.49 3.79
4322 5862 2.110721 TGCTCTCCCCATCTAGATGCTA 59.889 50.000 24.81 12.15 37.49 3.49
4324 5864 3.096092 CTCTCCCCATCTAGATGCTACC 58.904 54.545 24.81 0.00 37.49 3.18
4325 5865 2.724672 TCTCCCCATCTAGATGCTACCT 59.275 50.000 24.81 0.00 37.49 3.08
4326 5866 3.142977 TCTCCCCATCTAGATGCTACCTT 59.857 47.826 24.81 0.00 37.49 3.50
4327 5867 3.242867 TCCCCATCTAGATGCTACCTTG 58.757 50.000 24.81 10.79 37.49 3.61
4328 5868 2.289945 CCCCATCTAGATGCTACCTTGC 60.290 54.545 24.81 0.00 37.49 4.01
4329 5869 2.611473 CCCATCTAGATGCTACCTTGCG 60.611 54.545 24.81 9.48 37.49 4.85
4330 5870 2.064762 CATCTAGATGCTACCTTGCGC 58.935 52.381 19.47 0.00 35.36 6.09
4332 5872 1.480545 TCTAGATGCTACCTTGCGCAA 59.519 47.619 23.48 23.48 39.89 4.85
4333 5873 1.863454 CTAGATGCTACCTTGCGCAAG 59.137 52.381 37.33 37.33 39.89 4.01
4334 5874 0.036010 AGATGCTACCTTGCGCAAGT 60.036 50.000 39.50 30.41 39.89 3.16
4335 5875 0.097674 GATGCTACCTTGCGCAAGTG 59.902 55.000 39.50 32.66 39.89 3.16
4336 5876 1.926511 ATGCTACCTTGCGCAAGTGC 61.927 55.000 39.50 35.94 39.89 4.40
4337 5877 2.328099 GCTACCTTGCGCAAGTGCT 61.328 57.895 39.50 26.58 39.32 4.40
4341 5881 1.359833 CCTTGCGCAAGTGCTCAAA 59.640 52.632 39.50 10.80 43.91 2.69
4342 5882 0.936297 CCTTGCGCAAGTGCTCAAAC 60.936 55.000 39.50 0.00 43.91 2.93
4343 5883 0.029834 CTTGCGCAAGTGCTCAAACT 59.970 50.000 36.23 0.00 43.91 2.66
4344 5884 0.029300 TTGCGCAAGTGCTCAAACTC 59.971 50.000 21.02 0.00 41.99 3.01
4345 5885 1.094650 TGCGCAAGTGCTCAAACTCA 61.095 50.000 8.16 0.00 39.32 3.41
4346 5886 0.239347 GCGCAAGTGCTCAAACTCAT 59.761 50.000 0.30 0.00 39.32 2.90
4348 5888 2.726066 GCGCAAGTGCTCAAACTCATAC 60.726 50.000 0.30 0.00 39.32 2.39
4349 5889 2.472886 CGCAAGTGCTCAAACTCATACG 60.473 50.000 1.21 0.00 39.32 3.06
4350 5890 2.480419 GCAAGTGCTCAAACTCATACGT 59.520 45.455 0.00 0.00 38.21 3.57
4351 5891 3.665323 GCAAGTGCTCAAACTCATACGTG 60.665 47.826 0.00 0.00 38.21 4.49
4352 5892 3.386768 AGTGCTCAAACTCATACGTGT 57.613 42.857 0.00 0.00 0.00 4.49
4353 5893 3.728845 AGTGCTCAAACTCATACGTGTT 58.271 40.909 0.00 0.00 0.00 3.32
4355 5895 4.574828 AGTGCTCAAACTCATACGTGTTTT 59.425 37.500 0.00 0.00 36.86 2.43
4356 5896 5.065988 AGTGCTCAAACTCATACGTGTTTTT 59.934 36.000 0.00 0.00 36.86 1.94
4358 5898 5.295787 TGCTCAAACTCATACGTGTTTTTCT 59.704 36.000 0.00 0.00 36.86 2.52
4359 5899 5.846473 GCTCAAACTCATACGTGTTTTTCTC 59.154 40.000 0.00 0.00 36.86 2.87
4360 5900 6.292919 GCTCAAACTCATACGTGTTTTTCTCT 60.293 38.462 0.00 0.00 36.86 3.10
4361 5901 7.173863 TCAAACTCATACGTGTTTTTCTCTC 57.826 36.000 0.00 0.00 36.86 3.20
4362 5902 6.202188 TCAAACTCATACGTGTTTTTCTCTCC 59.798 38.462 0.00 0.00 36.86 3.71
4364 5904 5.607477 ACTCATACGTGTTTTTCTCTCCAA 58.393 37.500 0.00 0.00 0.00 3.53
4365 5905 6.053005 ACTCATACGTGTTTTTCTCTCCAAA 58.947 36.000 0.00 0.00 0.00 3.28
4366 5906 6.540914 ACTCATACGTGTTTTTCTCTCCAAAA 59.459 34.615 0.00 0.00 0.00 2.44
4367 5907 7.066525 ACTCATACGTGTTTTTCTCTCCAAAAA 59.933 33.333 0.00 0.00 33.72 1.94
4467 6311 6.949578 AATTGAACAAAACCAGCGAATATG 57.050 33.333 0.00 0.00 0.00 1.78
4476 6320 8.395633 ACAAAACCAGCGAATATGAAAGTATAC 58.604 33.333 0.00 0.00 0.00 1.47
4478 6322 6.169557 ACCAGCGAATATGAAAGTATACCA 57.830 37.500 0.00 0.00 0.00 3.25
4499 6343 4.272018 CCATTACTTCTTGAATCTCCGCTG 59.728 45.833 0.00 0.00 0.00 5.18
4520 6365 4.679373 GACAGGGTGTCATGATACTCAT 57.321 45.455 22.76 11.47 46.22 2.90
4536 6381 7.049754 TGATACTCATGAAACATGCATGTACT 58.950 34.615 31.55 21.57 42.77 2.73
4540 6385 5.941733 TCATGAAACATGCATGTACTTGAC 58.058 37.500 31.55 18.17 42.77 3.18
4542 6387 5.611796 TGAAACATGCATGTACTTGACTC 57.388 39.130 31.55 18.06 40.80 3.36
4586 6431 9.733556 AGTAACTAACATCATCCAACAATACAA 57.266 29.630 0.00 0.00 0.00 2.41
4598 6443 9.173021 CATCCAACAATACAAACCATAGTAGAA 57.827 33.333 0.00 0.00 0.00 2.10
4599 6444 9.747898 ATCCAACAATACAAACCATAGTAGAAA 57.252 29.630 0.00 0.00 0.00 2.52
4688 6533 9.900710 TTAAAAGCTGCAGTCGAAAATAAAATA 57.099 25.926 16.64 0.00 0.00 1.40
4690 6535 5.560148 AGCTGCAGTCGAAAATAAAATACG 58.440 37.500 16.64 0.00 0.00 3.06
4773 6618 3.255642 GCTGCTGGACAACCAAAAAGATA 59.744 43.478 0.00 0.00 46.32 1.98
4774 6619 4.261994 GCTGCTGGACAACCAAAAAGATAA 60.262 41.667 0.00 0.00 46.32 1.75
4836 6681 6.230472 ACTACTGCACTGTATTCAATCAACA 58.770 36.000 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.915659 TGAGCCTCAACGTCCCGT 60.916 61.111 0.00 0.00 43.97 5.28
17 18 2.125912 CTGAGCCTCAACGTCCCG 60.126 66.667 0.00 0.00 0.00 5.14
18 19 2.266055 CCTGAGCCTCAACGTCCC 59.734 66.667 0.00 0.00 0.00 4.46
19 20 2.435059 GCCTGAGCCTCAACGTCC 60.435 66.667 0.00 0.00 0.00 4.79
34 35 4.980805 TTCTGTGCGTGACGGGCC 62.981 66.667 7.25 0.00 0.00 5.80
35 36 3.414700 CTTCTGTGCGTGACGGGC 61.415 66.667 7.25 0.00 0.00 6.13
36 37 1.594293 AACTTCTGTGCGTGACGGG 60.594 57.895 7.25 0.00 0.00 5.28
37 38 1.151777 ACAACTTCTGTGCGTGACGG 61.152 55.000 7.25 0.00 36.69 4.79
38 39 0.650512 AACAACTTCTGTGCGTGACG 59.349 50.000 0.00 0.00 38.67 4.35
39 40 2.159572 ACAAACAACTTCTGTGCGTGAC 60.160 45.455 0.00 0.00 38.67 3.67
40 41 2.080693 ACAAACAACTTCTGTGCGTGA 58.919 42.857 0.00 0.00 38.67 4.35
41 42 2.159585 TCACAAACAACTTCTGTGCGTG 60.160 45.455 0.00 0.00 40.22 5.34
42 43 2.080693 TCACAAACAACTTCTGTGCGT 58.919 42.857 0.00 0.00 40.22 5.24
43 44 2.823196 TCACAAACAACTTCTGTGCG 57.177 45.000 0.00 0.00 40.22 5.34
44 45 5.724769 GCATTTTCACAAACAACTTCTGTGC 60.725 40.000 0.00 0.00 40.22 4.57
45 46 5.220453 GGCATTTTCACAAACAACTTCTGTG 60.220 40.000 0.00 0.00 41.47 3.66
46 47 4.869861 GGCATTTTCACAAACAACTTCTGT 59.130 37.500 0.00 0.00 41.27 3.41
47 48 4.869297 TGGCATTTTCACAAACAACTTCTG 59.131 37.500 0.00 0.00 0.00 3.02
48 49 5.083533 TGGCATTTTCACAAACAACTTCT 57.916 34.783 0.00 0.00 0.00 2.85
49 50 5.793026 TTGGCATTTTCACAAACAACTTC 57.207 34.783 0.00 0.00 0.00 3.01
56 57 8.950210 TCTATTTTTGTTTGGCATTTTCACAAA 58.050 25.926 0.00 0.00 35.94 2.83
57 58 8.498054 TCTATTTTTGTTTGGCATTTTCACAA 57.502 26.923 0.00 0.00 0.00 3.33
58 59 7.984050 TCTCTATTTTTGTTTGGCATTTTCACA 59.016 29.630 0.00 0.00 0.00 3.58
59 60 8.364129 TCTCTATTTTTGTTTGGCATTTTCAC 57.636 30.769 0.00 0.00 0.00 3.18
60 61 8.420222 TCTCTCTATTTTTGTTTGGCATTTTCA 58.580 29.630 0.00 0.00 0.00 2.69
61 62 8.816640 TCTCTCTATTTTTGTTTGGCATTTTC 57.183 30.769 0.00 0.00 0.00 2.29
62 63 7.874528 CCTCTCTCTATTTTTGTTTGGCATTTT 59.125 33.333 0.00 0.00 0.00 1.82
63 64 7.233348 TCCTCTCTCTATTTTTGTTTGGCATTT 59.767 33.333 0.00 0.00 0.00 2.32
64 65 6.721208 TCCTCTCTCTATTTTTGTTTGGCATT 59.279 34.615 0.00 0.00 0.00 3.56
65 66 6.248433 TCCTCTCTCTATTTTTGTTTGGCAT 58.752 36.000 0.00 0.00 0.00 4.40
66 67 5.630121 TCCTCTCTCTATTTTTGTTTGGCA 58.370 37.500 0.00 0.00 0.00 4.92
67 68 5.124617 CCTCCTCTCTCTATTTTTGTTTGGC 59.875 44.000 0.00 0.00 0.00 4.52
68 69 6.476378 TCCTCCTCTCTCTATTTTTGTTTGG 58.524 40.000 0.00 0.00 0.00 3.28
69 70 7.880195 TCTTCCTCCTCTCTCTATTTTTGTTTG 59.120 37.037 0.00 0.00 0.00 2.93
70 71 7.978925 TCTTCCTCCTCTCTCTATTTTTGTTT 58.021 34.615 0.00 0.00 0.00 2.83
71 72 7.560796 TCTTCCTCCTCTCTCTATTTTTGTT 57.439 36.000 0.00 0.00 0.00 2.83
72 73 7.456269 TCTTCTTCCTCCTCTCTCTATTTTTGT 59.544 37.037 0.00 0.00 0.00 2.83
73 74 7.846066 TCTTCTTCCTCCTCTCTCTATTTTTG 58.154 38.462 0.00 0.00 0.00 2.44
74 75 8.442660 TTCTTCTTCCTCCTCTCTCTATTTTT 57.557 34.615 0.00 0.00 0.00 1.94
75 76 8.485392 CATTCTTCTTCCTCCTCTCTCTATTTT 58.515 37.037 0.00 0.00 0.00 1.82
76 77 7.843760 TCATTCTTCTTCCTCCTCTCTCTATTT 59.156 37.037 0.00 0.00 0.00 1.40
77 78 7.287696 GTCATTCTTCTTCCTCCTCTCTCTATT 59.712 40.741 0.00 0.00 0.00 1.73
78 79 6.777580 GTCATTCTTCTTCCTCCTCTCTCTAT 59.222 42.308 0.00 0.00 0.00 1.98
79 80 6.126409 GTCATTCTTCTTCCTCCTCTCTCTA 58.874 44.000 0.00 0.00 0.00 2.43
80 81 4.956075 GTCATTCTTCTTCCTCCTCTCTCT 59.044 45.833 0.00 0.00 0.00 3.10
81 82 4.202010 CGTCATTCTTCTTCCTCCTCTCTC 60.202 50.000 0.00 0.00 0.00 3.20
82 83 3.699038 CGTCATTCTTCTTCCTCCTCTCT 59.301 47.826 0.00 0.00 0.00 3.10
83 84 3.445805 ACGTCATTCTTCTTCCTCCTCTC 59.554 47.826 0.00 0.00 0.00 3.20
84 85 3.194542 CACGTCATTCTTCTTCCTCCTCT 59.805 47.826 0.00 0.00 0.00 3.69
85 86 3.056465 ACACGTCATTCTTCTTCCTCCTC 60.056 47.826 0.00 0.00 0.00 3.71
86 87 2.900546 ACACGTCATTCTTCTTCCTCCT 59.099 45.455 0.00 0.00 0.00 3.69
87 88 2.996621 CACACGTCATTCTTCTTCCTCC 59.003 50.000 0.00 0.00 0.00 4.30
88 89 2.996621 CCACACGTCATTCTTCTTCCTC 59.003 50.000 0.00 0.00 0.00 3.71
89 90 2.289694 CCCACACGTCATTCTTCTTCCT 60.290 50.000 0.00 0.00 0.00 3.36
90 91 2.076863 CCCACACGTCATTCTTCTTCC 58.923 52.381 0.00 0.00 0.00 3.46
91 92 2.737252 GACCCACACGTCATTCTTCTTC 59.263 50.000 0.00 0.00 32.74 2.87
92 93 2.368875 AGACCCACACGTCATTCTTCTT 59.631 45.455 0.00 0.00 35.07 2.52
93 94 1.971357 AGACCCACACGTCATTCTTCT 59.029 47.619 0.00 0.00 35.07 2.85
94 95 2.288825 TGAGACCCACACGTCATTCTTC 60.289 50.000 0.00 0.00 35.07 2.87
95 96 1.691976 TGAGACCCACACGTCATTCTT 59.308 47.619 0.00 0.00 35.07 2.52
96 97 1.000955 GTGAGACCCACACGTCATTCT 59.999 52.381 0.00 0.00 45.03 2.40
97 98 1.429463 GTGAGACCCACACGTCATTC 58.571 55.000 0.00 0.00 45.03 2.67
98 99 3.606886 GTGAGACCCACACGTCATT 57.393 52.632 0.00 0.00 45.03 2.57
106 107 4.343239 ACCGTTATTATAGGTGAGACCCAC 59.657 45.833 0.00 0.00 39.75 4.61
107 108 4.549668 ACCGTTATTATAGGTGAGACCCA 58.450 43.478 0.00 0.00 39.75 4.51
108 109 4.586001 TGACCGTTATTATAGGTGAGACCC 59.414 45.833 0.00 0.00 39.75 4.46
109 110 5.779529 TGACCGTTATTATAGGTGAGACC 57.220 43.478 0.00 0.00 38.57 3.85
110 111 6.696148 CAGTTGACCGTTATTATAGGTGAGAC 59.304 42.308 0.00 0.00 38.57 3.36
111 112 6.604396 TCAGTTGACCGTTATTATAGGTGAGA 59.396 38.462 0.00 0.00 38.57 3.27
112 113 6.802608 TCAGTTGACCGTTATTATAGGTGAG 58.197 40.000 0.00 0.00 38.57 3.51
113 114 6.778834 TCAGTTGACCGTTATTATAGGTGA 57.221 37.500 0.00 0.00 38.57 4.02
114 115 6.020121 CGTTCAGTTGACCGTTATTATAGGTG 60.020 42.308 0.00 0.00 38.57 4.00
115 116 6.038356 CGTTCAGTTGACCGTTATTATAGGT 58.962 40.000 0.00 0.00 41.63 3.08
116 117 5.461078 CCGTTCAGTTGACCGTTATTATAGG 59.539 44.000 0.00 0.00 0.00 2.57
117 118 6.038356 ACCGTTCAGTTGACCGTTATTATAG 58.962 40.000 0.00 0.00 0.00 1.31
118 119 5.964758 ACCGTTCAGTTGACCGTTATTATA 58.035 37.500 0.00 0.00 0.00 0.98
119 120 4.824289 ACCGTTCAGTTGACCGTTATTAT 58.176 39.130 0.00 0.00 0.00 1.28
120 121 4.236935 GACCGTTCAGTTGACCGTTATTA 58.763 43.478 0.00 0.00 0.00 0.98
121 122 3.062042 GACCGTTCAGTTGACCGTTATT 58.938 45.455 0.00 0.00 0.00 1.40
122 123 2.036217 TGACCGTTCAGTTGACCGTTAT 59.964 45.455 0.00 0.00 0.00 1.89
123 124 1.408340 TGACCGTTCAGTTGACCGTTA 59.592 47.619 0.00 0.00 0.00 3.18
124 125 0.176219 TGACCGTTCAGTTGACCGTT 59.824 50.000 0.00 0.00 0.00 4.44
125 126 0.176219 TTGACCGTTCAGTTGACCGT 59.824 50.000 0.00 0.00 31.71 4.83
126 127 0.580104 GTTGACCGTTCAGTTGACCG 59.420 55.000 0.00 0.00 31.71 4.79
127 128 1.658994 TGTTGACCGTTCAGTTGACC 58.341 50.000 0.00 0.00 31.71 4.02
128 129 2.612212 ACATGTTGACCGTTCAGTTGAC 59.388 45.455 0.00 0.00 31.71 3.18
129 130 2.912771 ACATGTTGACCGTTCAGTTGA 58.087 42.857 0.00 0.00 31.71 3.18
130 131 3.691049 AACATGTTGACCGTTCAGTTG 57.309 42.857 11.07 0.00 31.71 3.16
131 132 5.821516 TTAAACATGTTGACCGTTCAGTT 57.178 34.783 12.82 0.00 31.71 3.16
132 133 5.821516 TTTAAACATGTTGACCGTTCAGT 57.178 34.783 12.82 0.00 31.71 3.41
133 134 6.434596 TGATTTAAACATGTTGACCGTTCAG 58.565 36.000 12.82 0.00 31.71 3.02
134 135 6.378710 TGATTTAAACATGTTGACCGTTCA 57.621 33.333 12.82 8.24 0.00 3.18
135 136 7.867445 AATGATTTAAACATGTTGACCGTTC 57.133 32.000 12.82 5.81 0.00 3.95
136 137 9.751542 TTAAATGATTTAAACATGTTGACCGTT 57.248 25.926 12.82 5.31 32.53 4.44
137 138 9.751542 TTTAAATGATTTAAACATGTTGACCGT 57.248 25.926 16.68 0.00 39.46 4.83
152 153 9.349713 TCAGATAATAGCCGGTTTAAATGATTT 57.650 29.630 1.90 0.00 0.00 2.17
153 154 8.918202 TCAGATAATAGCCGGTTTAAATGATT 57.082 30.769 1.90 0.00 0.00 2.57
154 155 8.918202 TTCAGATAATAGCCGGTTTAAATGAT 57.082 30.769 1.90 0.00 0.00 2.45
155 156 8.740123 TTTCAGATAATAGCCGGTTTAAATGA 57.260 30.769 1.90 5.56 0.00 2.57
156 157 9.965824 ATTTTCAGATAATAGCCGGTTTAAATG 57.034 29.630 1.90 3.45 0.00 2.32
157 158 9.965824 CATTTTCAGATAATAGCCGGTTTAAAT 57.034 29.630 1.90 0.00 0.00 1.40
158 159 8.410141 CCATTTTCAGATAATAGCCGGTTTAAA 58.590 33.333 1.90 0.00 0.00 1.52
159 160 7.558444 ACCATTTTCAGATAATAGCCGGTTTAA 59.442 33.333 1.90 0.00 0.00 1.52
160 161 7.057894 ACCATTTTCAGATAATAGCCGGTTTA 58.942 34.615 1.90 0.00 0.00 2.01
161 162 5.891551 ACCATTTTCAGATAATAGCCGGTTT 59.108 36.000 1.90 0.00 0.00 3.27
162 163 5.445964 ACCATTTTCAGATAATAGCCGGTT 58.554 37.500 1.90 0.00 0.00 4.44
163 164 5.048846 ACCATTTTCAGATAATAGCCGGT 57.951 39.130 1.90 0.00 0.00 5.28
164 165 6.231211 ACTACCATTTTCAGATAATAGCCGG 58.769 40.000 0.00 0.00 0.00 6.13
165 166 7.730364 AACTACCATTTTCAGATAATAGCCG 57.270 36.000 0.00 0.00 0.00 5.52
173 174 9.349713 TGTGACTAAAAACTACCATTTTCAGAT 57.650 29.630 0.00 0.00 31.35 2.90
174 175 8.740123 TGTGACTAAAAACTACCATTTTCAGA 57.260 30.769 0.00 0.00 31.35 3.27
175 176 9.796120 TTTGTGACTAAAAACTACCATTTTCAG 57.204 29.630 0.00 0.00 31.35 3.02
201 202 8.984764 GCCGAAAACTACCAAAAATTCTTAATT 58.015 29.630 0.00 0.00 0.00 1.40
202 203 7.601130 GGCCGAAAACTACCAAAAATTCTTAAT 59.399 33.333 0.00 0.00 0.00 1.40
203 204 6.924612 GGCCGAAAACTACCAAAAATTCTTAA 59.075 34.615 0.00 0.00 0.00 1.85
204 205 6.040616 TGGCCGAAAACTACCAAAAATTCTTA 59.959 34.615 0.00 0.00 0.00 2.10
205 206 5.163395 TGGCCGAAAACTACCAAAAATTCTT 60.163 36.000 0.00 0.00 0.00 2.52
206 207 4.342665 TGGCCGAAAACTACCAAAAATTCT 59.657 37.500 0.00 0.00 0.00 2.40
207 208 4.623002 TGGCCGAAAACTACCAAAAATTC 58.377 39.130 0.00 0.00 0.00 2.17
208 209 4.674281 TGGCCGAAAACTACCAAAAATT 57.326 36.364 0.00 0.00 0.00 1.82
209 210 4.882842 ATGGCCGAAAACTACCAAAAAT 57.117 36.364 0.00 0.00 35.41 1.82
210 211 4.674281 AATGGCCGAAAACTACCAAAAA 57.326 36.364 0.00 0.00 35.41 1.94
211 212 4.674281 AAATGGCCGAAAACTACCAAAA 57.326 36.364 0.00 0.00 35.41 2.44
212 213 4.674281 AAAATGGCCGAAAACTACCAAA 57.326 36.364 0.00 0.00 35.41 3.28
213 214 4.674281 AAAAATGGCCGAAAACTACCAA 57.326 36.364 0.00 0.00 35.41 3.67
231 232 7.396623 TCCCACAGAACTACCACTTTTTAAAAA 59.603 33.333 12.62 12.62 0.00 1.94
232 233 6.890814 TCCCACAGAACTACCACTTTTTAAAA 59.109 34.615 0.00 0.00 0.00 1.52
233 234 6.319405 GTCCCACAGAACTACCACTTTTTAAA 59.681 38.462 0.00 0.00 0.00 1.52
234 235 5.824097 GTCCCACAGAACTACCACTTTTTAA 59.176 40.000 0.00 0.00 0.00 1.52
235 236 5.104444 TGTCCCACAGAACTACCACTTTTTA 60.104 40.000 0.00 0.00 0.00 1.52
236 237 4.204799 GTCCCACAGAACTACCACTTTTT 58.795 43.478 0.00 0.00 0.00 1.94
237 238 3.201266 TGTCCCACAGAACTACCACTTTT 59.799 43.478 0.00 0.00 0.00 2.27
238 239 2.775384 TGTCCCACAGAACTACCACTTT 59.225 45.455 0.00 0.00 0.00 2.66
239 240 2.404559 TGTCCCACAGAACTACCACTT 58.595 47.619 0.00 0.00 0.00 3.16
240 241 2.097110 TGTCCCACAGAACTACCACT 57.903 50.000 0.00 0.00 0.00 4.00
241 242 2.922740 TTGTCCCACAGAACTACCAC 57.077 50.000 0.00 0.00 0.00 4.16
242 243 3.935818 TTTTGTCCCACAGAACTACCA 57.064 42.857 0.00 0.00 0.00 3.25
243 244 3.317149 GGTTTTTGTCCCACAGAACTACC 59.683 47.826 0.00 0.00 31.20 3.18
244 245 3.317149 GGGTTTTTGTCCCACAGAACTAC 59.683 47.826 0.00 0.00 44.05 2.73
245 246 3.558033 GGGTTTTTGTCCCACAGAACTA 58.442 45.455 0.00 0.00 44.05 2.24
246 247 2.384828 GGGTTTTTGTCCCACAGAACT 58.615 47.619 0.00 0.00 44.05 3.01
247 248 1.411246 GGGGTTTTTGTCCCACAGAAC 59.589 52.381 3.37 0.00 46.26 3.01
248 249 1.289530 AGGGGTTTTTGTCCCACAGAA 59.710 47.619 3.37 0.00 46.26 3.02
249 250 0.930726 AGGGGTTTTTGTCCCACAGA 59.069 50.000 3.37 0.00 46.26 3.41
250 251 2.668144 TAGGGGTTTTTGTCCCACAG 57.332 50.000 3.37 0.00 46.26 3.66
251 252 3.301274 CTTTAGGGGTTTTTGTCCCACA 58.699 45.455 3.37 0.00 46.26 4.17
252 253 3.069016 CACTTTAGGGGTTTTTGTCCCAC 59.931 47.826 3.37 0.00 46.26 4.61
253 254 3.052793 TCACTTTAGGGGTTTTTGTCCCA 60.053 43.478 3.37 0.00 46.26 4.37
254 255 3.568443 TCACTTTAGGGGTTTTTGTCCC 58.432 45.455 0.00 0.00 43.90 4.46
255 256 6.008331 ACTATCACTTTAGGGGTTTTTGTCC 58.992 40.000 0.00 0.00 0.00 4.02
256 257 7.520451 AACTATCACTTTAGGGGTTTTTGTC 57.480 36.000 0.00 0.00 0.00 3.18
257 258 7.907841 AAACTATCACTTTAGGGGTTTTTGT 57.092 32.000 0.00 0.00 0.00 2.83
280 281 6.978080 GCTATTTGGAGAGTGTTTGACAAAAA 59.022 34.615 1.27 0.00 32.44 1.94
281 282 6.321181 AGCTATTTGGAGAGTGTTTGACAAAA 59.679 34.615 1.27 0.00 32.44 2.44
282 283 5.827797 AGCTATTTGGAGAGTGTTTGACAAA 59.172 36.000 0.00 0.00 33.11 2.83
283 284 5.376625 AGCTATTTGGAGAGTGTTTGACAA 58.623 37.500 0.00 0.00 0.00 3.18
284 285 4.973168 AGCTATTTGGAGAGTGTTTGACA 58.027 39.130 0.00 0.00 0.00 3.58
285 286 4.997395 TGAGCTATTTGGAGAGTGTTTGAC 59.003 41.667 0.00 0.00 0.00 3.18
286 287 5.227569 TGAGCTATTTGGAGAGTGTTTGA 57.772 39.130 0.00 0.00 0.00 2.69
287 288 4.394300 CCTGAGCTATTTGGAGAGTGTTTG 59.606 45.833 0.00 0.00 0.00 2.93
288 289 4.042187 ACCTGAGCTATTTGGAGAGTGTTT 59.958 41.667 0.00 0.00 0.00 2.83
289 290 3.584848 ACCTGAGCTATTTGGAGAGTGTT 59.415 43.478 0.00 0.00 0.00 3.32
290 291 3.177228 ACCTGAGCTATTTGGAGAGTGT 58.823 45.455 0.00 0.00 0.00 3.55
291 292 3.902881 ACCTGAGCTATTTGGAGAGTG 57.097 47.619 0.00 0.00 0.00 3.51
292 293 4.777896 TGTAACCTGAGCTATTTGGAGAGT 59.222 41.667 0.00 0.00 0.00 3.24
293 294 5.344743 TGTAACCTGAGCTATTTGGAGAG 57.655 43.478 0.00 0.00 0.00 3.20
294 295 4.383118 GCTGTAACCTGAGCTATTTGGAGA 60.383 45.833 0.00 0.00 32.12 3.71
295 296 3.873952 GCTGTAACCTGAGCTATTTGGAG 59.126 47.826 0.00 0.00 32.12 3.86
305 306 3.321497 GACTTGTCTGCTGTAACCTGAG 58.679 50.000 0.00 0.00 0.00 3.35
306 307 2.037251 GGACTTGTCTGCTGTAACCTGA 59.963 50.000 0.61 0.00 0.00 3.86
349 350 1.204941 TGCTACTCTTTTCTCCCTCGC 59.795 52.381 0.00 0.00 0.00 5.03
370 371 3.446799 CCATTGGCAATGTTATTCGTGG 58.553 45.455 31.88 16.10 37.18 4.94
385 386 0.676466 TGTCCTAACAGCGCCATTGG 60.676 55.000 2.29 0.00 0.00 3.16
391 392 2.346803 TGATCTTTGTCCTAACAGCGC 58.653 47.619 0.00 0.00 36.57 5.92
392 393 3.589988 ACTGATCTTTGTCCTAACAGCG 58.410 45.455 0.00 0.00 36.57 5.18
415 416 2.588027 TCGGTATGCGTAATGCTTGA 57.412 45.000 0.00 0.00 46.63 3.02
424 425 1.206132 TGTTTGGAGATCGGTATGCGT 59.794 47.619 0.00 0.00 0.00 5.24
426 427 4.576463 AGAATTGTTTGGAGATCGGTATGC 59.424 41.667 0.00 0.00 0.00 3.14
428 429 5.992217 GCTAGAATTGTTTGGAGATCGGTAT 59.008 40.000 0.00 0.00 0.00 2.73
453 454 2.957491 TGTTTTTCACTTGCCCTGTG 57.043 45.000 0.00 0.00 36.82 3.66
459 460 5.160641 TCTCAACACTTGTTTTTCACTTGC 58.839 37.500 0.00 0.00 35.83 4.01
460 461 7.083858 TCTTCTCAACACTTGTTTTTCACTTG 58.916 34.615 0.00 0.00 35.83 3.16
502 503 4.397103 GCCTAACCCACACCAAATTACTAC 59.603 45.833 0.00 0.00 0.00 2.73
512 515 2.116238 TGATAGAGCCTAACCCACACC 58.884 52.381 0.00 0.00 0.00 4.16
513 516 3.134804 ACATGATAGAGCCTAACCCACAC 59.865 47.826 0.00 0.00 0.00 3.82
530 533 3.862845 CACGTGAATCGGTCAATACATGA 59.137 43.478 10.90 0.00 44.69 3.07
535 538 3.579335 TCACACGTGAATCGGTCAATA 57.421 42.857 25.01 0.00 44.69 1.90
542 545 2.848887 GAGTCTGATCACACGTGAATCG 59.151 50.000 25.01 17.85 43.58 3.34
563 566 8.194104 AGTTCATGCTGAAAGTAGTATGAGTAG 58.806 37.037 6.64 0.00 45.90 2.57
615 648 2.790468 GCTGACCACGCTAACTAGTACG 60.790 54.545 10.34 10.34 0.00 3.67
616 649 2.163010 TGCTGACCACGCTAACTAGTAC 59.837 50.000 0.00 0.00 0.00 2.73
617 650 2.439409 TGCTGACCACGCTAACTAGTA 58.561 47.619 0.00 0.00 0.00 1.82
618 651 1.254026 TGCTGACCACGCTAACTAGT 58.746 50.000 0.00 0.00 0.00 2.57
681 714 2.553086 ACTATCGACTGAGACGTCTCC 58.447 52.381 36.01 22.70 42.20 3.71
843 886 1.083489 TCATTGGGTTCGATTCGCAC 58.917 50.000 0.00 0.00 0.00 5.34
852 895 5.412904 AGAAACGAAAGAGATCATTGGGTTC 59.587 40.000 9.26 9.26 31.97 3.62
949 992 1.749063 AGCAAGCATGTCATGTCATGG 59.251 47.619 26.92 15.60 43.54 3.66
966 1013 2.842496 AGAATGATGAGAAGGGTGAGCA 59.158 45.455 0.00 0.00 0.00 4.26
1045 1095 0.106819 GCTCTCCCCAATGCTGACAT 60.107 55.000 0.00 0.00 38.49 3.06
1141 1191 1.967066 CATCTGGCCTATCTTCTCCGT 59.033 52.381 3.32 0.00 0.00 4.69
1188 1238 5.290493 AGTATTTTGATATCACCTCCGCA 57.710 39.130 4.48 0.00 0.00 5.69
1364 1423 2.181975 CACCATTGAAGCCCAATCCTT 58.818 47.619 0.00 0.00 43.27 3.36
1429 1488 2.296190 AGCGTCAATGCCGTAGATCATA 59.704 45.455 0.00 0.00 34.65 2.15
1775 1911 5.276395 GCAGCATGTATTATCTATTACCGCG 60.276 44.000 0.00 0.00 39.31 6.46
1796 1932 1.745141 GCTATCCAGACCAACCTGCAG 60.745 57.143 6.78 6.78 32.97 4.41
1917 2416 2.980568 GGTCATTGACCGGACAACATA 58.019 47.619 21.40 7.34 43.14 2.29
2100 2912 6.132658 TCTTACTGCAGAGGATATCAGAGTT 58.867 40.000 23.35 0.00 0.00 3.01
2303 3118 2.252976 AATGGTTGGCGTGCATTTTT 57.747 40.000 0.00 0.00 0.00 1.94
2366 3181 1.527034 TCTGCCAGAATGAGCAACAC 58.473 50.000 0.00 0.00 40.72 3.32
2458 3298 4.404073 TCACTAAACCCTGTTTGCACAAAT 59.596 37.500 0.00 0.00 32.36 2.32
2477 3317 2.787994 CCTTGCCAGTCTGAAATCACT 58.212 47.619 0.00 0.00 0.00 3.41
2615 3556 6.179756 TCCTTTGTCATGCTAGCTATCAAAA 58.820 36.000 17.23 10.16 0.00 2.44
2616 3557 5.744171 TCCTTTGTCATGCTAGCTATCAAA 58.256 37.500 17.23 18.13 0.00 2.69
2679 3643 6.314896 ACATTTGTATTAGCTGCAGAAGAGAC 59.685 38.462 20.43 9.51 0.00 3.36
2715 3681 6.688073 ACCTATATGGCAAGTAGCTATTGT 57.312 37.500 0.00 0.00 42.36 2.71
2840 4151 2.025155 TGCGAATGAGAGAGGGAGTAC 58.975 52.381 0.00 0.00 0.00 2.73
2844 4155 3.417069 TTTTTGCGAATGAGAGAGGGA 57.583 42.857 0.00 0.00 0.00 4.20
2862 4173 2.639839 TGAGCTCAGAGTAGGCCTTTTT 59.360 45.455 12.58 0.00 0.00 1.94
2863 4174 2.027653 GTGAGCTCAGAGTAGGCCTTTT 60.028 50.000 18.89 0.00 0.00 2.27
2864 4175 1.552792 GTGAGCTCAGAGTAGGCCTTT 59.447 52.381 18.89 0.00 0.00 3.11
2865 4176 1.190643 GTGAGCTCAGAGTAGGCCTT 58.809 55.000 18.89 0.00 0.00 4.35
2866 4177 0.334676 AGTGAGCTCAGAGTAGGCCT 59.665 55.000 18.89 11.78 0.00 5.19
2867 4178 0.744281 GAGTGAGCTCAGAGTAGGCC 59.256 60.000 18.89 2.22 41.29 5.19
2868 4179 1.762708 AGAGTGAGCTCAGAGTAGGC 58.237 55.000 18.89 3.06 44.00 3.93
2869 4180 4.713553 TCATAGAGTGAGCTCAGAGTAGG 58.286 47.826 18.89 10.27 44.00 3.18
2870 4181 5.997129 TGATCATAGAGTGAGCTCAGAGTAG 59.003 44.000 18.89 6.16 43.59 2.57
2871 4182 5.934781 TGATCATAGAGTGAGCTCAGAGTA 58.065 41.667 18.89 8.95 43.59 2.59
2872 4183 4.790937 TGATCATAGAGTGAGCTCAGAGT 58.209 43.478 18.89 4.55 43.59 3.24
2873 4184 5.771153 TTGATCATAGAGTGAGCTCAGAG 57.229 43.478 18.89 3.72 43.59 3.35
2874 4185 6.208402 GGTATTGATCATAGAGTGAGCTCAGA 59.792 42.308 18.89 10.25 43.59 3.27
2875 4186 6.389091 GGTATTGATCATAGAGTGAGCTCAG 58.611 44.000 18.89 4.12 43.59 3.35
2876 4187 5.244851 GGGTATTGATCATAGAGTGAGCTCA 59.755 44.000 13.74 13.74 43.59 4.26
2877 4188 5.337169 GGGGTATTGATCATAGAGTGAGCTC 60.337 48.000 6.82 6.82 43.59 4.09
2878 4189 4.530161 GGGGTATTGATCATAGAGTGAGCT 59.470 45.833 0.00 0.00 43.59 4.09
2879 4190 4.284490 TGGGGTATTGATCATAGAGTGAGC 59.716 45.833 0.00 0.00 43.51 4.26
2880 4191 6.183361 TGTTGGGGTATTGATCATAGAGTGAG 60.183 42.308 0.00 0.00 40.92 3.51
2881 4192 5.665360 TGTTGGGGTATTGATCATAGAGTGA 59.335 40.000 0.00 0.00 42.06 3.41
2882 4193 5.928976 TGTTGGGGTATTGATCATAGAGTG 58.071 41.667 0.00 0.00 0.00 3.51
2883 4194 6.770286 ATGTTGGGGTATTGATCATAGAGT 57.230 37.500 0.00 0.00 0.00 3.24
2884 4195 7.226441 TGAATGTTGGGGTATTGATCATAGAG 58.774 38.462 0.00 0.00 0.00 2.43
2885 4196 7.147958 TGAATGTTGGGGTATTGATCATAGA 57.852 36.000 0.00 0.00 0.00 1.98
2886 4197 7.822161 TTGAATGTTGGGGTATTGATCATAG 57.178 36.000 0.00 0.00 0.00 2.23
2887 4198 8.780616 AATTGAATGTTGGGGTATTGATCATA 57.219 30.769 0.00 0.00 0.00 2.15
2888 4199 7.679732 AATTGAATGTTGGGGTATTGATCAT 57.320 32.000 0.00 0.00 0.00 2.45
2889 4200 7.493499 AAATTGAATGTTGGGGTATTGATCA 57.507 32.000 0.00 0.00 0.00 2.92
2890 4201 8.791327 AAAAATTGAATGTTGGGGTATTGATC 57.209 30.769 0.00 0.00 0.00 2.92
2944 4288 4.491676 CAAAAGGAACCATGATCTGCAAG 58.508 43.478 0.00 0.00 0.00 4.01
3136 4480 6.530019 AAGAAAATGTGGTGTTCAGAACTT 57.470 33.333 14.51 0.00 0.00 2.66
3198 4569 7.571025 TCCTAACAATGGGAAGGAGTTTATAC 58.429 38.462 0.00 0.00 32.47 1.47
3205 4576 4.010349 GTGTTCCTAACAATGGGAAGGAG 58.990 47.826 0.00 0.00 45.73 3.69
3350 4726 1.391157 GGTTGCCCAAGTTGTCAGCA 61.391 55.000 8.03 8.03 0.00 4.41
3353 4729 3.289797 TTGGTTGCCCAAGTTGTCA 57.710 47.368 1.45 0.00 45.93 3.58
3404 4780 4.202101 CCAACAGTTTTGTCATTGCTGGTA 60.202 41.667 0.00 0.00 36.23 3.25
3408 4784 5.590530 TTACCAACAGTTTTGTCATTGCT 57.409 34.783 0.00 0.00 36.23 3.91
3469 4847 5.392767 TCCAGTGATCAACAACTCTACTC 57.607 43.478 0.00 0.00 0.00 2.59
3475 4853 7.823745 ACTTTTATTCCAGTGATCAACAACT 57.176 32.000 0.00 0.00 0.00 3.16
3512 4894 0.242825 TCGTCCCTGCGTTTCACTAG 59.757 55.000 0.00 0.00 0.00 2.57
3514 4896 1.300697 GTCGTCCCTGCGTTTCACT 60.301 57.895 0.00 0.00 0.00 3.41
3515 4897 2.654912 CGTCGTCCCTGCGTTTCAC 61.655 63.158 0.00 0.00 0.00 3.18
3560 4954 2.798148 CTACCTGCGTGTTGGGGTCC 62.798 65.000 0.00 0.00 33.74 4.46
3568 4962 1.542030 CTGAGAAGACTACCTGCGTGT 59.458 52.381 0.00 0.00 0.00 4.49
3578 4972 1.075698 TCCGGGTTCTCTGAGAAGACT 59.924 52.381 19.85 0.00 34.42 3.24
3587 4981 4.070552 GCGCTGTCCGGGTTCTCT 62.071 66.667 0.00 0.00 37.44 3.10
3608 5002 1.679898 GTACTTGCTGCTCCCCACT 59.320 57.895 0.00 0.00 0.00 4.00
3613 5007 1.794437 CGTAGTCGTACTTGCTGCTCC 60.794 57.143 0.00 0.00 0.00 4.70
3614 5008 1.536149 CGTAGTCGTACTTGCTGCTC 58.464 55.000 0.00 0.00 0.00 4.26
3618 5012 2.033065 CGATAGCGTAGTCGTACTTGCT 60.033 50.000 14.13 14.13 40.35 3.91
3635 5029 1.895020 GCTCACCCACCACCACGATA 61.895 60.000 0.00 0.00 0.00 2.92
3674 5068 1.668751 GTCAAGTTCAAGTTGTCGCCA 59.331 47.619 4.85 0.00 30.75 5.69
3684 5078 1.271163 GGTGGGGATCGTCAAGTTCAA 60.271 52.381 0.00 0.00 0.00 2.69
3713 5107 2.432146 GCAGATAGTCTGGATCACCACA 59.568 50.000 8.85 0.00 44.43 4.17
3715 5109 2.750814 TGCAGATAGTCTGGATCACCA 58.249 47.619 8.85 0.00 44.43 4.17
3729 5123 3.008813 ACACACTTGATCCTCTTGCAGAT 59.991 43.478 0.00 0.00 0.00 2.90
3752 5146 2.981302 CCGGAGATGAGCACCACA 59.019 61.111 0.00 0.00 0.00 4.17
3794 5188 0.035534 ATGCGTCCATGGCACTAACA 60.036 50.000 6.96 5.63 44.23 2.41
3795 5189 1.094785 AATGCGTCCATGGCACTAAC 58.905 50.000 6.96 0.00 44.23 2.34
3798 5192 2.048023 CCAATGCGTCCATGGCACT 61.048 57.895 6.96 0.00 44.23 4.40
3860 5254 2.016318 CCATAATTGCCGAAGAGCACA 58.984 47.619 0.00 0.00 43.97 4.57
3875 5269 0.544697 GCTTCCCGGAGAACCCATAA 59.455 55.000 0.73 0.00 34.14 1.90
3971 5365 1.045911 TGGTGAGGCCAAACCCAAAC 61.046 55.000 20.84 0.92 45.94 2.93
4004 5398 5.886609 TCTCAATTATTTCACCCCACTCAA 58.113 37.500 0.00 0.00 0.00 3.02
4017 5411 6.488006 CCGTCATTCTTCCCATCTCAATTATT 59.512 38.462 0.00 0.00 0.00 1.40
4033 5427 5.127194 TCTCTTGCATACTAACCGTCATTCT 59.873 40.000 0.00 0.00 0.00 2.40
4065 5459 7.148137 GGAGGTTGACATGATTTAACGGTTTAT 60.148 37.037 0.00 0.00 0.00 1.40
4067 5461 5.048294 GGAGGTTGACATGATTTAACGGTTT 60.048 40.000 0.00 0.00 0.00 3.27
4075 5469 4.386761 CCCCTATGGAGGTTGACATGATTT 60.387 45.833 0.00 0.00 41.95 2.17
4128 5523 9.635404 AGTTGATAGCAGTAGTAGATAAAGAGT 57.365 33.333 0.00 0.00 0.00 3.24
4140 5535 9.347934 GCAAGTATACATAGTTGATAGCAGTAG 57.652 37.037 17.23 0.00 43.20 2.57
4141 5536 9.078990 AGCAAGTATACATAGTTGATAGCAGTA 57.921 33.333 17.23 0.00 43.20 2.74
4143 5538 8.824159 AAGCAAGTATACATAGTTGATAGCAG 57.176 34.615 17.23 0.00 43.20 4.24
4198 5738 2.106166 AGGTGATTGGATGGCTCAGATC 59.894 50.000 0.00 0.00 0.00 2.75
4203 5743 0.548031 TCCAGGTGATTGGATGGCTC 59.452 55.000 0.00 0.00 42.24 4.70
4210 5750 0.452987 CGTTGCATCCAGGTGATTGG 59.547 55.000 0.00 0.00 39.70 3.16
4211 5751 0.452987 CCGTTGCATCCAGGTGATTG 59.547 55.000 0.00 0.00 0.00 2.67
4212 5752 0.680921 CCCGTTGCATCCAGGTGATT 60.681 55.000 0.00 0.00 0.00 2.57
4214 5754 2.350895 CCCGTTGCATCCAGGTGA 59.649 61.111 0.00 0.00 0.00 4.02
4220 5760 3.451894 CCTTGGCCCGTTGCATCC 61.452 66.667 0.00 0.00 43.89 3.51
4221 5761 4.133796 GCCTTGGCCCGTTGCATC 62.134 66.667 0.00 0.00 43.89 3.91
4234 5774 2.373502 GGCATAGGATACAAGAGGCCTT 59.626 50.000 6.77 0.00 39.09 4.35
4236 5776 1.338200 CGGCATAGGATACAAGAGGCC 60.338 57.143 0.00 0.00 38.88 5.19
4239 5779 2.894126 ACCTCGGCATAGGATACAAGAG 59.106 50.000 10.37 0.00 39.15 2.85
4240 5780 2.628178 CACCTCGGCATAGGATACAAGA 59.372 50.000 10.37 0.00 39.15 3.02
4242 5782 1.070134 GCACCTCGGCATAGGATACAA 59.930 52.381 10.37 0.00 39.15 2.41
4243 5783 0.679505 GCACCTCGGCATAGGATACA 59.320 55.000 10.37 0.00 39.15 2.29
4244 5784 0.388649 CGCACCTCGGCATAGGATAC 60.389 60.000 10.37 0.00 39.15 2.24
4245 5785 1.964448 CGCACCTCGGCATAGGATA 59.036 57.895 10.37 0.00 39.15 2.59
4256 5796 2.179517 CGACAGAGACCGCACCTC 59.820 66.667 0.00 0.00 0.00 3.85
4263 5803 4.057428 ACCGCTGCGACAGAGACC 62.057 66.667 25.45 0.00 33.20 3.85
4265 5805 3.295273 ACACCGCTGCGACAGAGA 61.295 61.111 25.45 0.00 33.20 3.10
4267 5807 3.145422 TTCACACCGCTGCGACAGA 62.145 57.895 25.45 12.54 32.44 3.41
4268 5808 2.661537 TTCACACCGCTGCGACAG 60.662 61.111 25.45 14.64 34.12 3.51
4269 5809 2.661537 CTTCACACCGCTGCGACA 60.662 61.111 25.45 0.00 0.00 4.35
4277 5817 2.176546 CATTGCGCCTTCACACCG 59.823 61.111 4.18 0.00 0.00 4.94
4278 5818 2.126346 GCATTGCGCCTTCACACC 60.126 61.111 4.18 0.00 32.94 4.16
4279 5819 1.007502 TTGCATTGCGCCTTCACAC 60.008 52.632 4.18 0.00 41.33 3.82
4281 5821 0.730494 GAGTTGCATTGCGCCTTCAC 60.730 55.000 4.18 0.00 41.33 3.18
4282 5822 0.890542 AGAGTTGCATTGCGCCTTCA 60.891 50.000 4.18 0.00 41.33 3.02
4283 5823 0.455633 CAGAGTTGCATTGCGCCTTC 60.456 55.000 4.18 0.00 41.33 3.46
4284 5824 1.582968 CAGAGTTGCATTGCGCCTT 59.417 52.632 4.18 0.00 41.33 4.35
4295 5835 1.202330 AGATGGGGAGAGCAGAGTTG 58.798 55.000 0.00 0.00 0.00 3.16
4296 5836 2.246067 TCTAGATGGGGAGAGCAGAGTT 59.754 50.000 0.00 0.00 0.00 3.01
4297 5837 1.856259 TCTAGATGGGGAGAGCAGAGT 59.144 52.381 0.00 0.00 0.00 3.24
4298 5838 2.673775 TCTAGATGGGGAGAGCAGAG 57.326 55.000 0.00 0.00 0.00 3.35
4299 5839 2.886913 CATCTAGATGGGGAGAGCAGA 58.113 52.381 22.89 0.00 35.24 4.26
4300 5840 1.275856 GCATCTAGATGGGGAGAGCAG 59.724 57.143 29.43 5.12 39.16 4.24
4301 5841 1.132913 AGCATCTAGATGGGGAGAGCA 60.133 52.381 29.43 0.00 39.16 4.26
4303 5843 3.096092 GGTAGCATCTAGATGGGGAGAG 58.904 54.545 29.43 7.17 39.16 3.20
4304 5844 2.724672 AGGTAGCATCTAGATGGGGAGA 59.275 50.000 29.43 0.00 39.16 3.71
4306 5846 3.242867 CAAGGTAGCATCTAGATGGGGA 58.757 50.000 29.43 0.00 39.16 4.81
4307 5847 2.289945 GCAAGGTAGCATCTAGATGGGG 60.290 54.545 29.43 9.24 39.16 4.96
4308 5848 2.611473 CGCAAGGTAGCATCTAGATGGG 60.611 54.545 29.43 10.87 39.16 4.00
4310 5850 2.064762 GCGCAAGGTAGCATCTAGATG 58.935 52.381 25.64 25.64 38.88 2.90
4311 5851 1.688735 TGCGCAAGGTAGCATCTAGAT 59.311 47.619 8.16 0.00 38.59 1.98
4312 5852 1.111277 TGCGCAAGGTAGCATCTAGA 58.889 50.000 8.16 0.00 38.59 2.43
4313 5853 1.863454 CTTGCGCAAGGTAGCATCTAG 59.137 52.381 36.86 12.36 43.42 2.43
4314 5854 1.207089 ACTTGCGCAAGGTAGCATCTA 59.793 47.619 43.26 12.21 43.42 1.98
4315 5855 0.036010 ACTTGCGCAAGGTAGCATCT 60.036 50.000 43.26 23.97 43.42 2.90
4316 5856 0.097674 CACTTGCGCAAGGTAGCATC 59.902 55.000 43.26 0.00 43.42 3.91
4317 5857 1.926511 GCACTTGCGCAAGGTAGCAT 61.927 55.000 43.26 25.33 43.42 3.79
4318 5858 2.616330 GCACTTGCGCAAGGTAGCA 61.616 57.895 43.26 15.01 42.53 3.49
4319 5859 2.176792 GCACTTGCGCAAGGTAGC 59.823 61.111 43.26 37.58 42.53 3.58
4329 5869 2.480419 ACGTATGAGTTTGAGCACTTGC 59.520 45.455 0.00 0.00 42.49 4.01
4330 5870 3.494626 ACACGTATGAGTTTGAGCACTTG 59.505 43.478 0.00 0.00 0.00 3.16
4332 5872 3.386768 ACACGTATGAGTTTGAGCACT 57.613 42.857 0.00 0.00 0.00 4.40
4333 5873 4.468095 AAACACGTATGAGTTTGAGCAC 57.532 40.909 9.35 0.00 37.48 4.40
4334 5874 5.295787 AGAAAAACACGTATGAGTTTGAGCA 59.704 36.000 10.68 0.00 38.61 4.26
4335 5875 5.748592 AGAAAAACACGTATGAGTTTGAGC 58.251 37.500 10.68 4.69 38.61 4.26
4336 5876 7.178712 AGAGAAAAACACGTATGAGTTTGAG 57.821 36.000 10.68 0.00 38.61 3.02
4337 5877 6.202188 GGAGAGAAAAACACGTATGAGTTTGA 59.798 38.462 10.68 0.00 38.61 2.69
4341 5881 5.209818 TGGAGAGAAAAACACGTATGAGT 57.790 39.130 0.00 0.00 0.00 3.41
4342 5882 6.539649 TTTGGAGAGAAAAACACGTATGAG 57.460 37.500 0.00 0.00 0.00 2.90
4343 5883 6.928979 TTTTGGAGAGAAAAACACGTATGA 57.071 33.333 0.00 0.00 0.00 2.15
4476 6320 4.272018 CAGCGGAGATTCAAGAAGTAATGG 59.728 45.833 0.00 0.00 0.00 3.16
4478 6322 5.112686 GTCAGCGGAGATTCAAGAAGTAAT 58.887 41.667 0.00 0.00 0.00 1.89
4492 6336 2.262915 GACACCCTGTCAGCGGAG 59.737 66.667 12.72 8.28 46.22 4.63
4520 6365 5.049474 GTGAGTCAAGTACATGCATGTTTCA 60.049 40.000 35.45 22.10 41.97 2.69
4536 6381 9.349713 ACTTTTATTCTTATGTTGGTGAGTCAA 57.650 29.630 0.00 0.00 0.00 3.18
4570 6415 9.342308 CTACTATGGTTTGTATTGTTGGATGAT 57.658 33.333 0.00 0.00 0.00 2.45
4599 6444 9.567776 TGTTGTATGGTCCGATGATATTAATTT 57.432 29.630 0.00 0.00 0.00 1.82
4601 6446 9.567776 TTTGTTGTATGGTCCGATGATATTAAT 57.432 29.630 0.00 0.00 0.00 1.40
4602 6447 8.832521 GTTTGTTGTATGGTCCGATGATATTAA 58.167 33.333 0.00 0.00 0.00 1.40
4603 6448 7.442969 GGTTTGTTGTATGGTCCGATGATATTA 59.557 37.037 0.00 0.00 0.00 0.98
4604 6449 6.262273 GGTTTGTTGTATGGTCCGATGATATT 59.738 38.462 0.00 0.00 0.00 1.28
4606 6451 5.120399 GGTTTGTTGTATGGTCCGATGATA 58.880 41.667 0.00 0.00 0.00 2.15
4607 6452 3.945285 GGTTTGTTGTATGGTCCGATGAT 59.055 43.478 0.00 0.00 0.00 2.45
4608 6453 3.244596 TGGTTTGTTGTATGGTCCGATGA 60.245 43.478 0.00 0.00 0.00 2.92
4609 6454 3.078097 TGGTTTGTTGTATGGTCCGATG 58.922 45.455 0.00 0.00 0.00 3.84
4610 6455 3.343617 CTGGTTTGTTGTATGGTCCGAT 58.656 45.455 0.00 0.00 0.00 4.18
4611 6456 2.551287 CCTGGTTTGTTGTATGGTCCGA 60.551 50.000 0.00 0.00 0.00 4.55
4612 6457 1.810151 CCTGGTTTGTTGTATGGTCCG 59.190 52.381 0.00 0.00 0.00 4.79
4613 6458 2.167662 CCCTGGTTTGTTGTATGGTCC 58.832 52.381 0.00 0.00 0.00 4.46
4614 6459 1.544246 GCCCTGGTTTGTTGTATGGTC 59.456 52.381 0.00 0.00 0.00 4.02
4615 6460 1.133325 TGCCCTGGTTTGTTGTATGGT 60.133 47.619 0.00 0.00 0.00 3.55
4616 6461 1.272212 GTGCCCTGGTTTGTTGTATGG 59.728 52.381 0.00 0.00 0.00 2.74
4617 6462 1.272212 GGTGCCCTGGTTTGTTGTATG 59.728 52.381 0.00 0.00 0.00 2.39
4688 6533 2.613026 TGGTCTGATGTTGTCAACGT 57.387 45.000 10.25 10.25 36.14 3.99
4690 6535 4.576463 GGGATATGGTCTGATGTTGTCAAC 59.424 45.833 8.86 8.86 36.14 3.18
4773 6618 5.234752 TGTCTGTTCATGCGTACTAATGTT 58.765 37.500 5.00 0.00 0.00 2.71
4774 6619 4.816392 TGTCTGTTCATGCGTACTAATGT 58.184 39.130 5.00 0.00 0.00 2.71
4818 6663 6.615088 AGATGTTGTTGATTGAATACAGTGC 58.385 36.000 0.00 0.00 0.00 4.40
4972 6818 5.369110 AGAAATAGGGATTCACAGCTGAGAT 59.631 40.000 23.35 10.75 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.