Multiple sequence alignment - TraesCS5B01G393500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G393500 chr5B 100.000 3971 0 0 1 3971 571613061 571617031 0.000000e+00 7334.0
1 TraesCS5B01G393500 chr5D 96.058 3171 97 14 818 3971 464693584 464690425 0.000000e+00 5138.0
2 TraesCS5B01G393500 chr5A 95.774 3171 112 11 818 3971 585098034 585094869 0.000000e+00 5094.0
3 TraesCS5B01G393500 chr4D 72.193 374 84 16 457 821 485407122 485406760 3.270000e-16 97.1
4 TraesCS5B01G393500 chr4D 88.889 63 5 2 3670 3732 94596278 94596338 4.260000e-10 76.8
5 TraesCS5B01G393500 chr6B 90.625 64 5 1 3670 3733 46425165 46425103 2.540000e-12 84.2
6 TraesCS5B01G393500 chr1A 95.833 48 2 0 3663 3710 129728206 129728253 1.180000e-10 78.7
7 TraesCS5B01G393500 chr1A 95.833 48 2 0 3670 3717 247339067 247339020 1.180000e-10 78.7
8 TraesCS5B01G393500 chr3A 89.062 64 3 2 3670 3733 477794537 477794478 4.260000e-10 76.8
9 TraesCS5B01G393500 chr1D 94.118 51 2 1 3672 3721 196818417 196818367 4.260000e-10 76.8
10 TraesCS5B01G393500 chr7B 92.453 53 3 1 3670 3722 392853897 392853846 1.530000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G393500 chr5B 571613061 571617031 3970 False 7334 7334 100.000 1 3971 1 chr5B.!!$F1 3970
1 TraesCS5B01G393500 chr5D 464690425 464693584 3159 True 5138 5138 96.058 818 3971 1 chr5D.!!$R1 3153
2 TraesCS5B01G393500 chr5A 585094869 585098034 3165 True 5094 5094 95.774 818 3971 1 chr5A.!!$R1 3153

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
864 868 0.039256 GCATTGCTCACCAAAAGCGA 60.039 50.0 0.16 0.0 42.83 4.93 F
1618 1632 0.307146 GATCTTTGAGCAGATGCCGC 59.693 55.0 0.14 0.0 43.38 6.53 F
1849 1863 0.318955 GGCGCTGCTTGTTGATTTGT 60.319 50.0 7.64 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1941 1955 1.680338 AATGGATAAGGGTCGCTTGC 58.320 50.000 12.19 4.44 0.00 4.01 R
2904 2918 0.615850 CCTGGAGTTCCTTCCTCACC 59.384 60.000 0.00 0.00 38.12 4.02 R
3632 3647 1.339631 CCAAACCAGAGGTAATCGGCA 60.340 52.381 0.00 0.00 33.12 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 6.345920 ACTATTTCAATAAGGAAAGACGCG 57.654 37.500 3.53 3.53 39.88 6.01
51 52 6.103997 ACTATTTCAATAAGGAAAGACGCGA 58.896 36.000 15.93 0.00 39.88 5.87
52 53 6.761714 ACTATTTCAATAAGGAAAGACGCGAT 59.238 34.615 15.93 0.00 39.88 4.58
53 54 7.924412 ACTATTTCAATAAGGAAAGACGCGATA 59.076 33.333 15.93 0.00 39.88 2.92
54 55 6.971527 TTTCAATAAGGAAAGACGCGATAA 57.028 33.333 15.93 0.00 33.16 1.75
55 56 7.548196 TTTCAATAAGGAAAGACGCGATAAT 57.452 32.000 15.93 0.00 33.16 1.28
56 57 6.525121 TCAATAAGGAAAGACGCGATAATG 57.475 37.500 15.93 0.00 0.00 1.90
57 58 6.277605 TCAATAAGGAAAGACGCGATAATGA 58.722 36.000 15.93 0.00 0.00 2.57
58 59 6.759356 TCAATAAGGAAAGACGCGATAATGAA 59.241 34.615 15.93 0.00 0.00 2.57
59 60 4.859629 AAGGAAAGACGCGATAATGAAC 57.140 40.909 15.93 0.00 0.00 3.18
60 61 2.858344 AGGAAAGACGCGATAATGAACG 59.142 45.455 15.93 0.00 0.00 3.95
61 62 2.855963 GGAAAGACGCGATAATGAACGA 59.144 45.455 15.93 0.00 0.00 3.85
62 63 3.061139 GGAAAGACGCGATAATGAACGAG 60.061 47.826 15.93 0.00 35.67 4.18
63 64 3.416119 AAGACGCGATAATGAACGAGA 57.584 42.857 15.93 0.00 33.96 4.04
64 65 2.988343 AGACGCGATAATGAACGAGAG 58.012 47.619 15.93 0.00 33.96 3.20
65 66 2.612672 AGACGCGATAATGAACGAGAGA 59.387 45.455 15.93 0.00 33.96 3.10
66 67 2.714985 GACGCGATAATGAACGAGAGAC 59.285 50.000 15.93 0.00 33.96 3.36
67 68 2.096980 ACGCGATAATGAACGAGAGACA 59.903 45.455 15.93 0.00 33.96 3.41
68 69 2.464380 CGCGATAATGAACGAGAGACAC 59.536 50.000 0.00 0.00 0.00 3.67
69 70 2.464380 GCGATAATGAACGAGAGACACG 59.536 50.000 0.00 0.00 0.00 4.49
70 71 3.787805 GCGATAATGAACGAGAGACACGA 60.788 47.826 0.00 0.00 34.70 4.35
71 72 4.528504 CGATAATGAACGAGAGACACGAT 58.471 43.478 0.00 0.00 34.70 3.73
72 73 4.970611 CGATAATGAACGAGAGACACGATT 59.029 41.667 0.00 0.00 34.70 3.34
73 74 6.134061 CGATAATGAACGAGAGACACGATTA 58.866 40.000 0.00 0.00 34.70 1.75
74 75 6.797513 CGATAATGAACGAGAGACACGATTAT 59.202 38.462 0.00 0.00 34.70 1.28
75 76 7.955864 CGATAATGAACGAGAGACACGATTATA 59.044 37.037 0.00 0.00 34.70 0.98
76 77 9.268255 GATAATGAACGAGAGACACGATTATAG 57.732 37.037 0.00 0.00 34.70 1.31
77 78 4.845387 TGAACGAGAGACACGATTATAGC 58.155 43.478 0.00 0.00 34.70 2.97
78 79 4.575236 TGAACGAGAGACACGATTATAGCT 59.425 41.667 0.00 0.00 34.70 3.32
79 80 4.735662 ACGAGAGACACGATTATAGCTC 57.264 45.455 0.00 0.00 34.70 4.09
80 81 4.127907 ACGAGAGACACGATTATAGCTCA 58.872 43.478 0.00 0.00 34.70 4.26
81 82 4.757657 ACGAGAGACACGATTATAGCTCAT 59.242 41.667 0.00 0.00 34.70 2.90
82 83 5.085390 CGAGAGACACGATTATAGCTCATG 58.915 45.833 0.00 0.00 0.00 3.07
83 84 5.384063 AGAGACACGATTATAGCTCATGG 57.616 43.478 0.00 0.00 0.00 3.66
84 85 3.919216 AGACACGATTATAGCTCATGGC 58.081 45.455 0.00 0.00 42.19 4.40
85 86 3.321968 AGACACGATTATAGCTCATGGCA 59.678 43.478 8.58 0.00 44.79 4.92
86 87 4.058124 GACACGATTATAGCTCATGGCAA 58.942 43.478 8.58 0.00 44.79 4.52
87 88 3.809832 ACACGATTATAGCTCATGGCAAC 59.190 43.478 8.58 0.00 44.79 4.17
88 89 4.060900 CACGATTATAGCTCATGGCAACT 58.939 43.478 8.58 0.00 44.79 3.16
89 90 4.151335 CACGATTATAGCTCATGGCAACTC 59.849 45.833 8.58 0.00 44.79 3.01
90 91 4.039730 ACGATTATAGCTCATGGCAACTCT 59.960 41.667 8.58 0.00 44.79 3.24
91 92 5.243954 ACGATTATAGCTCATGGCAACTCTA 59.756 40.000 8.58 0.00 44.79 2.43
92 93 5.804473 CGATTATAGCTCATGGCAACTCTAG 59.196 44.000 8.58 0.00 44.79 2.43
93 94 6.349694 CGATTATAGCTCATGGCAACTCTAGA 60.350 42.308 8.58 0.00 44.79 2.43
94 95 6.731292 TTATAGCTCATGGCAACTCTAGAA 57.269 37.500 8.58 0.00 44.79 2.10
95 96 3.988976 AGCTCATGGCAACTCTAGAAA 57.011 42.857 8.58 0.00 44.79 2.52
96 97 4.500499 AGCTCATGGCAACTCTAGAAAT 57.500 40.909 8.58 0.00 44.79 2.17
97 98 4.853007 AGCTCATGGCAACTCTAGAAATT 58.147 39.130 8.58 0.00 44.79 1.82
98 99 5.259632 AGCTCATGGCAACTCTAGAAATTT 58.740 37.500 8.58 0.00 44.79 1.82
99 100 5.713861 AGCTCATGGCAACTCTAGAAATTTT 59.286 36.000 8.58 0.00 44.79 1.82
100 101 6.210185 AGCTCATGGCAACTCTAGAAATTTTT 59.790 34.615 8.58 0.00 44.79 1.94
139 140 9.516314 ACTATTCAAACTTAAAACTGAAGCAAC 57.484 29.630 0.00 0.00 31.70 4.17
140 141 9.736023 CTATTCAAACTTAAAACTGAAGCAACT 57.264 29.630 0.00 0.00 31.70 3.16
142 143 8.825667 TTCAAACTTAAAACTGAAGCAACTTT 57.174 26.923 0.00 0.00 0.00 2.66
143 144 8.825667 TCAAACTTAAAACTGAAGCAACTTTT 57.174 26.923 0.00 0.00 0.00 2.27
144 145 8.707839 TCAAACTTAAAACTGAAGCAACTTTTG 58.292 29.630 0.00 0.00 0.00 2.44
160 161 3.569250 TTTTGCCCTAAAAGACGCATC 57.431 42.857 0.00 0.00 33.48 3.91
161 162 2.192664 TTGCCCTAAAAGACGCATCA 57.807 45.000 0.00 0.00 0.00 3.07
162 163 2.192664 TGCCCTAAAAGACGCATCAA 57.807 45.000 0.00 0.00 0.00 2.57
163 164 2.509569 TGCCCTAAAAGACGCATCAAA 58.490 42.857 0.00 0.00 0.00 2.69
164 165 2.487762 TGCCCTAAAAGACGCATCAAAG 59.512 45.455 0.00 0.00 0.00 2.77
165 166 2.159379 GCCCTAAAAGACGCATCAAAGG 60.159 50.000 0.00 0.00 0.00 3.11
166 167 3.343617 CCCTAAAAGACGCATCAAAGGA 58.656 45.455 0.00 0.00 0.00 3.36
167 168 3.947834 CCCTAAAAGACGCATCAAAGGAT 59.052 43.478 0.00 0.00 0.00 3.24
168 169 5.123227 CCCTAAAAGACGCATCAAAGGATA 58.877 41.667 0.00 0.00 30.87 2.59
169 170 5.588648 CCCTAAAAGACGCATCAAAGGATAA 59.411 40.000 0.00 0.00 30.87 1.75
170 171 6.094881 CCCTAAAAGACGCATCAAAGGATAAA 59.905 38.462 0.00 0.00 30.87 1.40
171 172 7.362574 CCCTAAAAGACGCATCAAAGGATAAAA 60.363 37.037 0.00 0.00 30.87 1.52
172 173 8.026607 CCTAAAAGACGCATCAAAGGATAAAAA 58.973 33.333 0.00 0.00 30.87 1.94
195 196 9.709495 AAAAATTACATAGTTCTACCACGTACA 57.291 29.630 0.00 0.00 0.00 2.90
196 197 8.922058 AAATTACATAGTTCTACCACGTACAG 57.078 34.615 0.00 0.00 0.00 2.74
197 198 7.870509 ATTACATAGTTCTACCACGTACAGA 57.129 36.000 0.00 0.00 0.00 3.41
198 199 5.557891 ACATAGTTCTACCACGTACAGAC 57.442 43.478 0.00 0.00 0.00 3.51
199 200 5.005740 ACATAGTTCTACCACGTACAGACA 58.994 41.667 0.00 0.00 0.00 3.41
200 201 5.474532 ACATAGTTCTACCACGTACAGACAA 59.525 40.000 0.00 0.00 0.00 3.18
201 202 6.152323 ACATAGTTCTACCACGTACAGACAAT 59.848 38.462 0.00 0.00 0.00 2.71
202 203 5.464030 AGTTCTACCACGTACAGACAATT 57.536 39.130 0.00 0.00 0.00 2.32
203 204 6.579666 AGTTCTACCACGTACAGACAATTA 57.420 37.500 0.00 0.00 0.00 1.40
204 205 6.385033 AGTTCTACCACGTACAGACAATTAC 58.615 40.000 0.00 0.00 0.00 1.89
205 206 5.314923 TCTACCACGTACAGACAATTACC 57.685 43.478 0.00 0.00 0.00 2.85
206 207 5.012239 TCTACCACGTACAGACAATTACCT 58.988 41.667 0.00 0.00 0.00 3.08
207 208 4.184079 ACCACGTACAGACAATTACCTC 57.816 45.455 0.00 0.00 0.00 3.85
208 209 3.830755 ACCACGTACAGACAATTACCTCT 59.169 43.478 0.00 0.00 0.00 3.69
209 210 4.082354 ACCACGTACAGACAATTACCTCTC 60.082 45.833 0.00 0.00 0.00 3.20
210 211 4.421948 CACGTACAGACAATTACCTCTCC 58.578 47.826 0.00 0.00 0.00 3.71
211 212 4.158025 CACGTACAGACAATTACCTCTCCT 59.842 45.833 0.00 0.00 0.00 3.69
212 213 4.771054 ACGTACAGACAATTACCTCTCCTT 59.229 41.667 0.00 0.00 0.00 3.36
213 214 5.245526 ACGTACAGACAATTACCTCTCCTTT 59.754 40.000 0.00 0.00 0.00 3.11
214 215 6.164176 CGTACAGACAATTACCTCTCCTTTT 58.836 40.000 0.00 0.00 0.00 2.27
215 216 6.649557 CGTACAGACAATTACCTCTCCTTTTT 59.350 38.462 0.00 0.00 0.00 1.94
247 248 6.775594 AAAAAGAACCAATGGCTAGGATAC 57.224 37.500 0.00 0.00 0.00 2.24
248 249 4.439253 AAGAACCAATGGCTAGGATACC 57.561 45.455 0.00 0.00 37.17 2.73
249 250 3.393687 AGAACCAATGGCTAGGATACCA 58.606 45.455 0.00 0.00 41.06 3.25
250 251 3.785887 AGAACCAATGGCTAGGATACCAA 59.214 43.478 0.00 0.00 39.96 3.67
251 252 4.229582 AGAACCAATGGCTAGGATACCAAA 59.770 41.667 0.00 0.00 39.96 3.28
252 253 4.601406 ACCAATGGCTAGGATACCAAAA 57.399 40.909 0.00 0.00 39.96 2.44
253 254 5.142806 ACCAATGGCTAGGATACCAAAAT 57.857 39.130 0.00 0.00 39.96 1.82
254 255 4.895297 ACCAATGGCTAGGATACCAAAATG 59.105 41.667 0.00 0.00 39.96 2.32
255 256 4.895297 CCAATGGCTAGGATACCAAAATGT 59.105 41.667 0.00 0.00 39.96 2.71
256 257 5.010012 CCAATGGCTAGGATACCAAAATGTC 59.990 44.000 0.00 0.00 39.96 3.06
257 258 4.853468 TGGCTAGGATACCAAAATGTCA 57.147 40.909 0.00 0.00 31.46 3.58
258 259 5.387113 TGGCTAGGATACCAAAATGTCAT 57.613 39.130 0.00 0.00 31.46 3.06
259 260 5.765510 TGGCTAGGATACCAAAATGTCATT 58.234 37.500 0.00 0.00 31.46 2.57
260 261 6.194235 TGGCTAGGATACCAAAATGTCATTT 58.806 36.000 4.91 4.91 31.46 2.32
261 262 6.667414 TGGCTAGGATACCAAAATGTCATTTT 59.333 34.615 16.26 16.26 42.81 1.82
262 263 7.180051 TGGCTAGGATACCAAAATGTCATTTTT 59.820 33.333 18.84 9.89 40.27 1.94
296 297 9.382244 GACACAAGAATATATATTTTTCGCACC 57.618 33.333 9.33 0.00 0.00 5.01
297 298 8.349983 ACACAAGAATATATATTTTTCGCACCC 58.650 33.333 9.33 0.00 0.00 4.61
298 299 8.349245 CACAAGAATATATATTTTTCGCACCCA 58.651 33.333 9.33 0.00 0.00 4.51
299 300 8.908903 ACAAGAATATATATTTTTCGCACCCAA 58.091 29.630 9.33 0.00 0.00 4.12
300 301 9.912634 CAAGAATATATATTTTTCGCACCCAAT 57.087 29.630 9.33 0.00 0.00 3.16
306 307 6.879188 ATATTTTTCGCACCCAATTTAACG 57.121 33.333 0.00 0.00 0.00 3.18
307 308 3.712091 TTTTCGCACCCAATTTAACGT 57.288 38.095 0.00 0.00 0.00 3.99
308 309 2.690173 TTCGCACCCAATTTAACGTG 57.310 45.000 0.00 0.00 0.00 4.49
309 310 1.595466 TCGCACCCAATTTAACGTGT 58.405 45.000 0.00 0.00 0.00 4.49
310 311 2.763933 TCGCACCCAATTTAACGTGTA 58.236 42.857 0.00 0.00 0.00 2.90
311 312 2.479656 TCGCACCCAATTTAACGTGTAC 59.520 45.455 0.00 0.00 0.00 2.90
312 313 2.223611 CGCACCCAATTTAACGTGTACA 59.776 45.455 0.00 0.00 0.00 2.90
313 314 3.557508 GCACCCAATTTAACGTGTACAC 58.442 45.455 16.32 16.32 0.00 2.90
314 315 3.251487 GCACCCAATTTAACGTGTACACT 59.749 43.478 23.01 8.63 0.00 3.55
315 316 4.261280 GCACCCAATTTAACGTGTACACTT 60.261 41.667 23.01 17.28 0.00 3.16
316 317 5.209240 CACCCAATTTAACGTGTACACTTG 58.791 41.667 23.01 17.72 0.00 3.16
317 318 5.007823 CACCCAATTTAACGTGTACACTTGA 59.992 40.000 23.01 4.84 0.00 3.02
318 319 5.766174 ACCCAATTTAACGTGTACACTTGAT 59.234 36.000 23.01 9.22 0.00 2.57
319 320 6.072893 ACCCAATTTAACGTGTACACTTGATC 60.073 38.462 23.01 0.00 0.00 2.92
320 321 6.148811 CCCAATTTAACGTGTACACTTGATCT 59.851 38.462 23.01 2.24 0.00 2.75
321 322 7.308348 CCCAATTTAACGTGTACACTTGATCTT 60.308 37.037 23.01 7.91 0.00 2.40
322 323 8.073768 CCAATTTAACGTGTACACTTGATCTTT 58.926 33.333 23.01 6.71 0.00 2.52
331 332 9.262472 CGTGTACACTTGATCTTTAATTAAAGC 57.738 33.333 26.48 16.96 41.77 3.51
336 337 9.630098 ACACTTGATCTTTAATTAAAGCATGTG 57.370 29.630 31.47 31.47 41.10 3.21
337 338 9.630098 CACTTGATCTTTAATTAAAGCATGTGT 57.370 29.630 28.89 22.44 41.77 3.72
338 339 9.630098 ACTTGATCTTTAATTAAAGCATGTGTG 57.370 29.630 26.48 16.73 41.77 3.82
339 340 9.844790 CTTGATCTTTAATTAAAGCATGTGTGA 57.155 29.630 26.48 12.18 41.77 3.58
398 399 7.962964 TTTTTAGTATGAAGTGAGGAGTGTG 57.037 36.000 0.00 0.00 0.00 3.82
399 400 6.665992 TTTAGTATGAAGTGAGGAGTGTGT 57.334 37.500 0.00 0.00 0.00 3.72
400 401 4.527509 AGTATGAAGTGAGGAGTGTGTG 57.472 45.455 0.00 0.00 0.00 3.82
401 402 2.175878 ATGAAGTGAGGAGTGTGTGC 57.824 50.000 0.00 0.00 0.00 4.57
402 403 1.123077 TGAAGTGAGGAGTGTGTGCT 58.877 50.000 0.00 0.00 0.00 4.40
403 404 2.316108 TGAAGTGAGGAGTGTGTGCTA 58.684 47.619 0.00 0.00 0.00 3.49
404 405 2.035961 TGAAGTGAGGAGTGTGTGCTAC 59.964 50.000 0.00 0.00 0.00 3.58
405 406 0.969894 AGTGAGGAGTGTGTGCTACC 59.030 55.000 0.00 0.00 0.00 3.18
406 407 0.388649 GTGAGGAGTGTGTGCTACCG 60.389 60.000 0.00 0.00 0.00 4.02
407 408 0.538746 TGAGGAGTGTGTGCTACCGA 60.539 55.000 0.00 0.00 0.00 4.69
408 409 0.171455 GAGGAGTGTGTGCTACCGAG 59.829 60.000 0.00 0.00 0.00 4.63
420 421 3.719173 GCTACCGAGCTGAGAAAGTAT 57.281 47.619 0.00 0.00 45.98 2.12
421 422 3.634283 GCTACCGAGCTGAGAAAGTATC 58.366 50.000 0.00 0.00 45.98 2.24
422 423 3.066900 GCTACCGAGCTGAGAAAGTATCA 59.933 47.826 0.00 0.00 45.98 2.15
423 424 3.791973 ACCGAGCTGAGAAAGTATCAG 57.208 47.619 0.00 0.00 45.71 2.90
424 425 2.428890 ACCGAGCTGAGAAAGTATCAGG 59.571 50.000 0.00 0.00 43.61 3.86
428 429 3.258971 GCTGAGAAAGTATCAGGTGCT 57.741 47.619 5.22 0.00 43.61 4.40
429 430 3.604582 GCTGAGAAAGTATCAGGTGCTT 58.395 45.455 5.22 0.00 43.61 3.91
430 431 3.620821 GCTGAGAAAGTATCAGGTGCTTC 59.379 47.826 5.22 0.00 43.61 3.86
431 432 4.187694 CTGAGAAAGTATCAGGTGCTTCC 58.812 47.826 0.00 0.00 40.44 3.46
432 433 3.582647 TGAGAAAGTATCAGGTGCTTCCA 59.417 43.478 1.79 0.00 39.02 3.53
433 434 4.187694 GAGAAAGTATCAGGTGCTTCCAG 58.812 47.826 1.79 0.00 39.02 3.86
434 435 2.409948 AAGTATCAGGTGCTTCCAGC 57.590 50.000 1.79 0.00 42.82 4.85
435 436 0.543749 AGTATCAGGTGCTTCCAGCC 59.456 55.000 0.00 0.00 41.51 4.85
436 437 0.543749 GTATCAGGTGCTTCCAGCCT 59.456 55.000 0.00 0.00 41.51 4.58
437 438 1.065126 GTATCAGGTGCTTCCAGCCTT 60.065 52.381 0.00 0.00 41.51 4.35
438 439 0.323178 ATCAGGTGCTTCCAGCCTTG 60.323 55.000 0.00 0.00 41.51 3.61
439 440 1.073722 CAGGTGCTTCCAGCCTTGA 59.926 57.895 0.00 0.00 41.51 3.02
440 441 0.959372 CAGGTGCTTCCAGCCTTGAG 60.959 60.000 0.00 0.00 41.51 3.02
441 442 1.676967 GGTGCTTCCAGCCTTGAGG 60.677 63.158 0.00 0.00 41.51 3.86
460 461 3.439494 CTCAGCCTTGAGTGCTCTC 57.561 57.895 8.86 8.86 44.74 3.20
461 462 0.458197 CTCAGCCTTGAGTGCTCTCG 60.458 60.000 10.97 0.00 44.74 4.04
462 463 2.099431 CAGCCTTGAGTGCTCTCGC 61.099 63.158 10.97 8.37 43.09 5.03
463 464 2.264166 GCCTTGAGTGCTCTCGCT 59.736 61.111 10.97 0.00 43.09 4.93
464 465 2.099431 GCCTTGAGTGCTCTCGCTG 61.099 63.158 10.97 3.17 43.09 5.18
465 466 2.099431 CCTTGAGTGCTCTCGCTGC 61.099 63.158 10.97 0.00 43.09 5.25
466 467 1.079956 CTTGAGTGCTCTCGCTGCT 60.080 57.895 10.97 0.00 43.09 4.24
467 468 1.077645 CTTGAGTGCTCTCGCTGCTC 61.078 60.000 10.97 0.00 43.09 4.26
468 469 2.202730 GAGTGCTCTCGCTGCTCC 60.203 66.667 0.00 0.00 34.87 4.70
469 470 2.993840 AGTGCTCTCGCTGCTCCA 60.994 61.111 0.00 0.00 36.97 3.86
470 471 2.047844 GTGCTCTCGCTGCTCCAA 60.048 61.111 0.00 0.00 36.97 3.53
471 472 1.449246 GTGCTCTCGCTGCTCCAAT 60.449 57.895 0.00 0.00 36.97 3.16
472 473 1.449070 TGCTCTCGCTGCTCCAATG 60.449 57.895 0.00 0.00 36.97 2.82
473 474 1.449246 GCTCTCGCTGCTCCAATGT 60.449 57.895 0.00 0.00 0.00 2.71
474 475 1.023513 GCTCTCGCTGCTCCAATGTT 61.024 55.000 0.00 0.00 0.00 2.71
475 476 1.740380 GCTCTCGCTGCTCCAATGTTA 60.740 52.381 0.00 0.00 0.00 2.41
476 477 2.621338 CTCTCGCTGCTCCAATGTTAA 58.379 47.619 0.00 0.00 0.00 2.01
477 478 3.002791 CTCTCGCTGCTCCAATGTTAAA 58.997 45.455 0.00 0.00 0.00 1.52
478 479 3.407698 TCTCGCTGCTCCAATGTTAAAA 58.592 40.909 0.00 0.00 0.00 1.52
479 480 3.818210 TCTCGCTGCTCCAATGTTAAAAA 59.182 39.130 0.00 0.00 0.00 1.94
519 520 9.384764 TGTTTAAGAAAAATCCCGAAAAATTGT 57.615 25.926 0.00 0.00 0.00 2.71
520 521 9.644993 GTTTAAGAAAAATCCCGAAAAATTGTG 57.355 29.630 0.00 0.00 0.00 3.33
521 522 9.601217 TTTAAGAAAAATCCCGAAAAATTGTGA 57.399 25.926 0.00 0.00 0.00 3.58
522 523 9.601217 TTAAGAAAAATCCCGAAAAATTGTGAA 57.399 25.926 0.00 0.00 0.00 3.18
523 524 8.675705 AAGAAAAATCCCGAAAAATTGTGAAT 57.324 26.923 0.00 0.00 0.00 2.57
524 525 8.086851 AGAAAAATCCCGAAAAATTGTGAATG 57.913 30.769 0.00 0.00 0.00 2.67
525 526 7.714813 AGAAAAATCCCGAAAAATTGTGAATGT 59.285 29.630 0.00 0.00 0.00 2.71
526 527 7.800155 AAAATCCCGAAAAATTGTGAATGTT 57.200 28.000 0.00 0.00 0.00 2.71
527 528 7.420184 AAATCCCGAAAAATTGTGAATGTTC 57.580 32.000 0.00 0.00 0.00 3.18
528 529 5.521906 TCCCGAAAAATTGTGAATGTTCA 57.478 34.783 0.00 0.00 34.20 3.18
529 530 6.095432 TCCCGAAAAATTGTGAATGTTCAT 57.905 33.333 0.00 0.00 39.73 2.57
530 531 7.220741 TCCCGAAAAATTGTGAATGTTCATA 57.779 32.000 0.00 0.00 39.73 2.15
531 532 7.661968 TCCCGAAAAATTGTGAATGTTCATAA 58.338 30.769 7.27 7.27 41.45 1.90
532 533 8.144478 TCCCGAAAAATTGTGAATGTTCATAAA 58.856 29.630 8.63 3.47 40.76 1.40
533 534 8.434661 CCCGAAAAATTGTGAATGTTCATAAAG 58.565 33.333 8.63 0.00 40.76 1.85
534 535 9.190858 CCGAAAAATTGTGAATGTTCATAAAGA 57.809 29.630 8.63 0.00 40.76 2.52
550 551 9.230932 GTTCATAAAGAACGTGACTATAGTACC 57.769 37.037 5.09 0.00 46.36 3.34
551 552 8.743085 TCATAAAGAACGTGACTATAGTACCT 57.257 34.615 5.09 0.00 0.00 3.08
552 553 9.836864 TCATAAAGAACGTGACTATAGTACCTA 57.163 33.333 5.09 0.00 0.00 3.08
638 639 9.646427 AAATAGTGTAAAAAGACAAAAGCAACA 57.354 25.926 0.00 0.00 0.00 3.33
639 640 9.816354 AATAGTGTAAAAAGACAAAAGCAACAT 57.184 25.926 0.00 0.00 0.00 2.71
640 641 9.816354 ATAGTGTAAAAAGACAAAAGCAACATT 57.184 25.926 0.00 0.00 0.00 2.71
641 642 7.962917 AGTGTAAAAAGACAAAAGCAACATTG 58.037 30.769 0.00 0.00 0.00 2.82
642 643 7.816995 AGTGTAAAAAGACAAAAGCAACATTGA 59.183 29.630 0.00 0.00 0.00 2.57
643 644 7.897800 GTGTAAAAAGACAAAAGCAACATTGAC 59.102 33.333 0.00 0.00 0.00 3.18
644 645 7.600375 TGTAAAAAGACAAAAGCAACATTGACA 59.400 29.630 0.00 0.00 0.00 3.58
645 646 6.407475 AAAAGACAAAAGCAACATTGACAC 57.593 33.333 0.00 0.00 0.00 3.67
646 647 4.045636 AGACAAAAGCAACATTGACACC 57.954 40.909 0.00 0.00 0.00 4.16
647 648 3.446873 AGACAAAAGCAACATTGACACCA 59.553 39.130 0.00 0.00 0.00 4.17
648 649 4.099881 AGACAAAAGCAACATTGACACCAT 59.900 37.500 0.00 0.00 0.00 3.55
649 650 4.768583 ACAAAAGCAACATTGACACCATT 58.231 34.783 0.00 0.00 0.00 3.16
650 651 5.911752 ACAAAAGCAACATTGACACCATTA 58.088 33.333 0.00 0.00 0.00 1.90
651 652 6.344500 ACAAAAGCAACATTGACACCATTAA 58.656 32.000 0.00 0.00 0.00 1.40
652 653 6.257630 ACAAAAGCAACATTGACACCATTAAC 59.742 34.615 0.00 0.00 0.00 2.01
653 654 5.528043 AAGCAACATTGACACCATTAACA 57.472 34.783 0.00 0.00 0.00 2.41
654 655 5.726980 AGCAACATTGACACCATTAACAT 57.273 34.783 0.00 0.00 0.00 2.71
655 656 6.832520 AGCAACATTGACACCATTAACATA 57.167 33.333 0.00 0.00 0.00 2.29
656 657 7.408756 AGCAACATTGACACCATTAACATAT 57.591 32.000 0.00 0.00 0.00 1.78
657 658 8.518430 AGCAACATTGACACCATTAACATATA 57.482 30.769 0.00 0.00 0.00 0.86
658 659 8.965819 AGCAACATTGACACCATTAACATATAA 58.034 29.630 0.00 0.00 0.00 0.98
659 660 9.579768 GCAACATTGACACCATTAACATATAAA 57.420 29.630 0.00 0.00 0.00 1.40
681 682 7.953005 AAATTTGTCCTTTTTGTTTCCCAAT 57.047 28.000 0.00 0.00 31.81 3.16
682 683 6.940831 ATTTGTCCTTTTTGTTTCCCAATG 57.059 33.333 0.00 0.00 31.81 2.82
683 684 3.802866 TGTCCTTTTTGTTTCCCAATGC 58.197 40.909 0.00 0.00 31.81 3.56
684 685 3.138304 GTCCTTTTTGTTTCCCAATGCC 58.862 45.455 0.00 0.00 31.81 4.40
685 686 2.774234 TCCTTTTTGTTTCCCAATGCCA 59.226 40.909 0.00 0.00 31.81 4.92
686 687 3.393941 TCCTTTTTGTTTCCCAATGCCAT 59.606 39.130 0.00 0.00 31.81 4.40
687 688 4.141298 TCCTTTTTGTTTCCCAATGCCATT 60.141 37.500 0.00 0.00 31.81 3.16
688 689 4.583907 CCTTTTTGTTTCCCAATGCCATTT 59.416 37.500 0.00 0.00 31.81 2.32
689 690 5.278414 CCTTTTTGTTTCCCAATGCCATTTC 60.278 40.000 0.00 0.00 31.81 2.17
690 691 2.739885 TGTTTCCCAATGCCATTTCG 57.260 45.000 0.00 0.00 0.00 3.46
691 692 2.242926 TGTTTCCCAATGCCATTTCGA 58.757 42.857 0.00 0.00 0.00 3.71
692 693 2.230992 TGTTTCCCAATGCCATTTCGAG 59.769 45.455 0.00 0.00 0.00 4.04
693 694 2.214376 TTCCCAATGCCATTTCGAGT 57.786 45.000 0.00 0.00 0.00 4.18
694 695 2.214376 TCCCAATGCCATTTCGAGTT 57.786 45.000 0.00 0.00 0.00 3.01
695 696 2.524306 TCCCAATGCCATTTCGAGTTT 58.476 42.857 0.00 0.00 0.00 2.66
696 697 2.230992 TCCCAATGCCATTTCGAGTTTG 59.769 45.455 0.00 0.00 0.00 2.93
697 698 2.609350 CCAATGCCATTTCGAGTTTGG 58.391 47.619 6.11 6.11 0.00 3.28
698 699 2.230992 CCAATGCCATTTCGAGTTTGGA 59.769 45.455 12.88 1.51 35.29 3.53
699 700 3.244976 CAATGCCATTTCGAGTTTGGAC 58.755 45.455 12.88 6.31 31.94 4.02
700 701 1.243902 TGCCATTTCGAGTTTGGACC 58.756 50.000 12.88 0.00 31.94 4.46
701 702 1.202879 TGCCATTTCGAGTTTGGACCT 60.203 47.619 12.88 0.00 31.94 3.85
702 703 1.200020 GCCATTTCGAGTTTGGACCTG 59.800 52.381 12.88 0.00 31.94 4.00
703 704 2.778299 CCATTTCGAGTTTGGACCTGA 58.222 47.619 4.78 0.00 31.94 3.86
704 705 3.146066 CCATTTCGAGTTTGGACCTGAA 58.854 45.455 4.78 0.00 31.94 3.02
705 706 3.568007 CCATTTCGAGTTTGGACCTGAAA 59.432 43.478 4.78 0.00 35.33 2.69
706 707 4.218417 CCATTTCGAGTTTGGACCTGAAAT 59.782 41.667 4.78 0.00 39.08 2.17
707 708 5.278957 CCATTTCGAGTTTGGACCTGAAATT 60.279 40.000 4.78 0.00 37.71 1.82
708 709 5.432885 TTTCGAGTTTGGACCTGAAATTC 57.567 39.130 0.00 0.00 29.61 2.17
709 710 4.351874 TCGAGTTTGGACCTGAAATTCT 57.648 40.909 0.00 0.00 0.00 2.40
710 711 4.714632 TCGAGTTTGGACCTGAAATTCTT 58.285 39.130 0.00 0.00 0.00 2.52
711 712 5.860611 TCGAGTTTGGACCTGAAATTCTTA 58.139 37.500 0.00 0.00 0.00 2.10
712 713 5.932303 TCGAGTTTGGACCTGAAATTCTTAG 59.068 40.000 0.00 0.00 0.00 2.18
713 714 5.390991 CGAGTTTGGACCTGAAATTCTTAGC 60.391 44.000 0.00 0.00 0.00 3.09
714 715 4.455877 AGTTTGGACCTGAAATTCTTAGCG 59.544 41.667 0.00 0.00 0.00 4.26
715 716 2.985896 TGGACCTGAAATTCTTAGCGG 58.014 47.619 0.00 0.00 0.00 5.52
716 717 2.304761 TGGACCTGAAATTCTTAGCGGT 59.695 45.455 0.00 0.00 0.00 5.68
717 718 3.244770 TGGACCTGAAATTCTTAGCGGTT 60.245 43.478 0.00 0.00 0.00 4.44
718 719 3.127030 GGACCTGAAATTCTTAGCGGTTG 59.873 47.826 0.00 0.00 0.00 3.77
719 720 3.751518 ACCTGAAATTCTTAGCGGTTGT 58.248 40.909 0.00 0.00 0.00 3.32
720 721 4.901868 ACCTGAAATTCTTAGCGGTTGTA 58.098 39.130 0.00 0.00 0.00 2.41
721 722 4.935808 ACCTGAAATTCTTAGCGGTTGTAG 59.064 41.667 0.00 0.00 0.00 2.74
722 723 4.935808 CCTGAAATTCTTAGCGGTTGTAGT 59.064 41.667 0.00 0.00 0.00 2.73
723 724 5.063564 CCTGAAATTCTTAGCGGTTGTAGTC 59.936 44.000 0.00 0.00 0.00 2.59
724 725 5.543714 TGAAATTCTTAGCGGTTGTAGTCA 58.456 37.500 0.00 0.00 0.00 3.41
725 726 5.407387 TGAAATTCTTAGCGGTTGTAGTCAC 59.593 40.000 0.00 0.00 0.00 3.67
726 727 4.530710 ATTCTTAGCGGTTGTAGTCACA 57.469 40.909 0.00 0.00 0.00 3.58
727 728 4.530710 TTCTTAGCGGTTGTAGTCACAT 57.469 40.909 0.00 0.00 33.76 3.21
728 729 4.530710 TCTTAGCGGTTGTAGTCACATT 57.469 40.909 0.00 0.00 33.76 2.71
729 730 4.491676 TCTTAGCGGTTGTAGTCACATTC 58.508 43.478 0.00 0.00 33.76 2.67
730 731 2.094762 AGCGGTTGTAGTCACATTCC 57.905 50.000 0.00 0.00 33.76 3.01
731 732 1.623811 AGCGGTTGTAGTCACATTCCT 59.376 47.619 0.00 0.00 33.76 3.36
732 733 2.000447 GCGGTTGTAGTCACATTCCTC 59.000 52.381 0.00 0.00 33.76 3.71
733 734 2.259618 CGGTTGTAGTCACATTCCTCG 58.740 52.381 0.00 0.00 33.76 4.63
734 735 2.352421 CGGTTGTAGTCACATTCCTCGT 60.352 50.000 0.00 0.00 33.76 4.18
735 736 3.119743 CGGTTGTAGTCACATTCCTCGTA 60.120 47.826 0.00 0.00 33.76 3.43
736 737 4.616604 CGGTTGTAGTCACATTCCTCGTAA 60.617 45.833 0.00 0.00 33.76 3.18
737 738 4.863131 GGTTGTAGTCACATTCCTCGTAAG 59.137 45.833 0.00 0.00 33.76 2.34
738 739 4.106029 TGTAGTCACATTCCTCGTAAGC 57.894 45.455 0.00 0.00 37.18 3.09
739 740 2.279582 AGTCACATTCCTCGTAAGCG 57.720 50.000 0.00 0.00 39.92 4.68
740 741 1.544691 AGTCACATTCCTCGTAAGCGT 59.455 47.619 0.00 0.00 39.49 5.07
741 742 2.029290 AGTCACATTCCTCGTAAGCGTT 60.029 45.455 0.00 0.00 39.49 4.84
742 743 2.344741 GTCACATTCCTCGTAAGCGTTC 59.655 50.000 0.00 0.00 39.49 3.95
743 744 2.029739 TCACATTCCTCGTAAGCGTTCA 60.030 45.455 0.00 0.00 39.49 3.18
744 745 2.930040 CACATTCCTCGTAAGCGTTCAT 59.070 45.455 0.00 0.00 39.49 2.57
745 746 4.109766 CACATTCCTCGTAAGCGTTCATA 58.890 43.478 0.00 0.00 39.49 2.15
746 747 4.745125 CACATTCCTCGTAAGCGTTCATAT 59.255 41.667 0.00 0.00 39.49 1.78
747 748 5.234329 CACATTCCTCGTAAGCGTTCATATT 59.766 40.000 0.00 0.00 39.49 1.28
748 749 5.815740 ACATTCCTCGTAAGCGTTCATATTT 59.184 36.000 0.00 0.00 39.49 1.40
749 750 6.315393 ACATTCCTCGTAAGCGTTCATATTTT 59.685 34.615 0.00 0.00 39.49 1.82
750 751 6.730960 TTCCTCGTAAGCGTTCATATTTTT 57.269 33.333 0.00 0.00 39.49 1.94
798 799 5.989551 AAATGTTTTTGTGACATTGGAGC 57.010 34.783 3.53 0.00 44.55 4.70
799 800 4.669206 ATGTTTTTGTGACATTGGAGCA 57.331 36.364 0.00 0.00 34.18 4.26
800 801 3.779759 TGTTTTTGTGACATTGGAGCAC 58.220 40.909 0.00 0.00 0.00 4.40
801 802 3.123050 GTTTTTGTGACATTGGAGCACC 58.877 45.455 0.00 0.00 0.00 5.01
802 803 0.950836 TTTGTGACATTGGAGCACCG 59.049 50.000 0.00 0.00 39.42 4.94
803 804 0.888736 TTGTGACATTGGAGCACCGG 60.889 55.000 0.00 0.00 39.42 5.28
804 805 2.040544 GTGACATTGGAGCACCGGG 61.041 63.158 6.32 0.00 39.42 5.73
805 806 2.220586 TGACATTGGAGCACCGGGA 61.221 57.895 6.32 0.00 39.42 5.14
806 807 1.450312 GACATTGGAGCACCGGGAG 60.450 63.158 6.32 0.00 39.42 4.30
849 853 2.181525 GAATGGCAACGGCGCATT 59.818 55.556 10.83 8.63 40.92 3.56
860 864 1.006337 GGCGCATTGCTCACCAAAA 60.006 52.632 10.83 0.00 45.43 2.44
861 865 1.010419 GGCGCATTGCTCACCAAAAG 61.010 55.000 10.83 0.00 45.43 2.27
862 866 1.620413 GCGCATTGCTCACCAAAAGC 61.620 55.000 0.30 0.00 41.73 3.51
863 867 2.437850 GCATTGCTCACCAAAAGCG 58.562 52.632 0.16 0.00 42.83 4.68
864 868 0.039256 GCATTGCTCACCAAAAGCGA 60.039 50.000 0.16 0.00 42.83 4.93
865 869 1.973138 CATTGCTCACCAAAAGCGAG 58.027 50.000 0.00 0.00 42.83 5.03
866 870 1.536766 CATTGCTCACCAAAAGCGAGA 59.463 47.619 0.00 0.00 42.83 4.04
867 871 1.229428 TTGCTCACCAAAAGCGAGAG 58.771 50.000 0.00 0.00 42.83 3.20
887 891 0.807667 CGCGATGAGACAAGGAAGGG 60.808 60.000 0.00 0.00 0.00 3.95
1317 1331 4.899239 CTCGCGGAGATGCCCCAC 62.899 72.222 6.13 0.00 0.00 4.61
1507 1521 3.490759 GTGTGGCGCATGGAGTCG 61.491 66.667 10.83 0.00 0.00 4.18
1569 1583 1.078497 CCTGGTCCACGCTTATGCA 60.078 57.895 1.16 0.00 39.64 3.96
1618 1632 0.307146 GATCTTTGAGCAGATGCCGC 59.693 55.000 0.14 0.00 43.38 6.53
1849 1863 0.318955 GGCGCTGCTTGTTGATTTGT 60.319 50.000 7.64 0.00 0.00 2.83
1941 1955 0.887247 TTGATGCCCATCCGTTTGTG 59.113 50.000 5.86 0.00 37.02 3.33
1985 1999 2.143122 TGGTTCTTGTGATCGTCTTGC 58.857 47.619 0.00 0.00 0.00 4.01
2446 2460 2.082231 CTGTGTCTCCTTGGAATGCTG 58.918 52.381 0.00 0.00 0.00 4.41
2705 2719 2.810852 GACACTTGGAAGAGGCAGAAAG 59.189 50.000 0.00 0.00 0.00 2.62
2886 2900 1.670406 CTTTGCTGAGGCTGCTCGT 60.670 57.895 0.00 0.00 39.59 4.18
2904 2918 4.437390 GCTCGTTGGAATAATGTGTCCTTG 60.437 45.833 0.00 0.00 34.77 3.61
2924 2938 1.645710 GTGAGGAAGGAACTCCAGGA 58.354 55.000 0.00 0.00 38.49 3.86
2934 2948 5.437191 AGGAACTCCAGGACGAAAATATT 57.563 39.130 0.00 0.00 38.89 1.28
2972 2986 4.067896 AGCAGTGGAGTTGTTCAGTAATG 58.932 43.478 0.00 0.00 0.00 1.90
2980 2994 5.476945 GGAGTTGTTCAGTAATGGGTCATTT 59.523 40.000 0.00 0.00 35.54 2.32
3029 3043 4.095483 GCAACAACTATGATAGCAAGCAGT 59.905 41.667 0.00 0.00 0.00 4.40
3113 3127 8.469309 ACTAAAATGGCAGCAACTGAATATAT 57.531 30.769 0.00 0.00 32.44 0.86
3114 3128 9.573166 ACTAAAATGGCAGCAACTGAATATATA 57.427 29.630 0.00 0.00 32.44 0.86
3355 3369 4.450976 TCTTGCTTTCACTTTCTGCACTA 58.549 39.130 0.00 0.00 33.13 2.74
3399 3413 5.099042 TCAGGAAAAGGTTAGGATGCTAC 57.901 43.478 0.00 0.00 0.00 3.58
3421 3435 7.918562 GCTACGAGAAATATCAGTCTTTCTTCT 59.081 37.037 0.00 0.00 40.77 2.85
3478 3492 3.325135 AGGCCTTCTAAATGGTATCCTCG 59.675 47.826 0.00 0.00 0.00 4.63
3513 3527 3.273434 GTGTTCAGATTCTATGCAGGCA 58.727 45.455 0.00 0.00 0.00 4.75
3530 3544 7.268199 TGCAGGCAGATTTAAGATTATCAAG 57.732 36.000 0.00 0.00 0.00 3.02
3636 3651 1.081242 GGTTTGCATGTCAGTGCCG 60.081 57.895 0.00 0.00 44.43 5.69
3720 3735 9.551734 ACGTTTTAGGTCACTAAAGAAGTTTAT 57.448 29.630 0.00 0.00 46.59 1.40
3747 3762 5.605908 AGGGAGTACTGATCATGATTCATGT 59.394 40.000 22.64 12.41 41.98 3.21
3748 3763 6.784473 AGGGAGTACTGATCATGATTCATGTA 59.216 38.462 22.64 12.23 41.98 2.29
3749 3764 7.039152 AGGGAGTACTGATCATGATTCATGTAG 60.039 40.741 22.64 19.97 41.98 2.74
3751 3766 7.256119 GGAGTACTGATCATGATTCATGTAGGT 60.256 40.741 22.64 18.30 41.98 3.08
3752 3767 7.440198 AGTACTGATCATGATTCATGTAGGTG 58.560 38.462 22.64 13.92 41.98 4.00
3792 3808 3.662759 TGGTGTTCCCTTTCTTTCTGT 57.337 42.857 0.00 0.00 0.00 3.41
3890 3908 6.157994 TGCTTCCTAGTTCCCTTTATGTACAT 59.842 38.462 13.93 13.93 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 8.548721 CGCGTCTTTCCTTATTGAAATAGTTAT 58.451 33.333 0.00 0.00 33.98 1.89
25 26 7.760794 TCGCGTCTTTCCTTATTGAAATAGTTA 59.239 33.333 5.77 0.00 33.98 2.24
26 27 6.592607 TCGCGTCTTTCCTTATTGAAATAGTT 59.407 34.615 5.77 0.00 33.98 2.24
27 28 6.103997 TCGCGTCTTTCCTTATTGAAATAGT 58.896 36.000 5.77 0.00 33.98 2.12
28 29 6.583912 TCGCGTCTTTCCTTATTGAAATAG 57.416 37.500 5.77 0.00 33.98 1.73
29 30 8.651391 TTATCGCGTCTTTCCTTATTGAAATA 57.349 30.769 5.77 0.00 33.98 1.40
30 31 7.548196 TTATCGCGTCTTTCCTTATTGAAAT 57.452 32.000 5.77 0.00 33.98 2.17
31 32 6.971527 TTATCGCGTCTTTCCTTATTGAAA 57.028 33.333 5.77 0.00 33.42 2.69
32 33 6.759356 TCATTATCGCGTCTTTCCTTATTGAA 59.241 34.615 5.77 0.00 0.00 2.69
33 34 6.277605 TCATTATCGCGTCTTTCCTTATTGA 58.722 36.000 5.77 0.00 0.00 2.57
34 35 6.525121 TCATTATCGCGTCTTTCCTTATTG 57.475 37.500 5.77 0.00 0.00 1.90
35 36 6.292168 CGTTCATTATCGCGTCTTTCCTTATT 60.292 38.462 5.77 0.00 0.00 1.40
36 37 5.175126 CGTTCATTATCGCGTCTTTCCTTAT 59.825 40.000 5.77 0.00 0.00 1.73
37 38 4.501559 CGTTCATTATCGCGTCTTTCCTTA 59.498 41.667 5.77 0.00 0.00 2.69
38 39 3.306166 CGTTCATTATCGCGTCTTTCCTT 59.694 43.478 5.77 0.00 0.00 3.36
39 40 2.858344 CGTTCATTATCGCGTCTTTCCT 59.142 45.455 5.77 0.00 0.00 3.36
40 41 2.855963 TCGTTCATTATCGCGTCTTTCC 59.144 45.455 5.77 0.00 0.00 3.13
41 42 3.789756 TCTCGTTCATTATCGCGTCTTTC 59.210 43.478 5.77 0.00 0.00 2.62
42 43 3.766151 TCTCGTTCATTATCGCGTCTTT 58.234 40.909 5.77 0.00 0.00 2.52
43 44 3.064958 TCTCTCGTTCATTATCGCGTCTT 59.935 43.478 5.77 0.00 0.00 3.01
44 45 2.612672 TCTCTCGTTCATTATCGCGTCT 59.387 45.455 5.77 0.00 0.00 4.18
45 46 2.714985 GTCTCTCGTTCATTATCGCGTC 59.285 50.000 5.77 0.00 0.00 5.19
46 47 2.096980 TGTCTCTCGTTCATTATCGCGT 59.903 45.455 5.77 0.00 0.00 6.01
47 48 2.464380 GTGTCTCTCGTTCATTATCGCG 59.536 50.000 0.00 0.00 0.00 5.87
48 49 2.464380 CGTGTCTCTCGTTCATTATCGC 59.536 50.000 0.00 0.00 0.00 4.58
49 50 3.936661 TCGTGTCTCTCGTTCATTATCG 58.063 45.455 0.00 0.00 0.00 2.92
50 51 9.268255 CTATAATCGTGTCTCTCGTTCATTATC 57.732 37.037 0.00 0.00 0.00 1.75
51 52 7.751348 GCTATAATCGTGTCTCTCGTTCATTAT 59.249 37.037 0.00 0.00 0.00 1.28
52 53 7.041303 AGCTATAATCGTGTCTCTCGTTCATTA 60.041 37.037 0.00 0.00 0.00 1.90
53 54 5.915758 GCTATAATCGTGTCTCTCGTTCATT 59.084 40.000 0.00 0.00 0.00 2.57
54 55 5.239744 AGCTATAATCGTGTCTCTCGTTCAT 59.760 40.000 0.00 0.00 0.00 2.57
55 56 4.575236 AGCTATAATCGTGTCTCTCGTTCA 59.425 41.667 0.00 0.00 0.00 3.18
56 57 5.098218 AGCTATAATCGTGTCTCTCGTTC 57.902 43.478 0.00 0.00 0.00 3.95
57 58 4.575236 TGAGCTATAATCGTGTCTCTCGTT 59.425 41.667 0.00 0.00 0.00 3.85
58 59 4.127907 TGAGCTATAATCGTGTCTCTCGT 58.872 43.478 0.00 0.00 0.00 4.18
59 60 4.733972 TGAGCTATAATCGTGTCTCTCG 57.266 45.455 0.00 0.00 0.00 4.04
60 61 5.398169 CCATGAGCTATAATCGTGTCTCTC 58.602 45.833 0.00 0.00 32.79 3.20
61 62 4.321601 GCCATGAGCTATAATCGTGTCTCT 60.322 45.833 0.00 0.00 38.99 3.10
62 63 3.923461 GCCATGAGCTATAATCGTGTCTC 59.077 47.826 0.00 0.00 38.99 3.36
63 64 3.321968 TGCCATGAGCTATAATCGTGTCT 59.678 43.478 0.00 0.00 44.23 3.41
64 65 3.653344 TGCCATGAGCTATAATCGTGTC 58.347 45.455 0.00 0.00 44.23 3.67
65 66 3.751479 TGCCATGAGCTATAATCGTGT 57.249 42.857 0.00 0.00 44.23 4.49
66 67 4.060900 AGTTGCCATGAGCTATAATCGTG 58.939 43.478 0.00 1.45 44.23 4.35
67 68 4.039730 AGAGTTGCCATGAGCTATAATCGT 59.960 41.667 0.00 0.00 44.23 3.73
68 69 4.564041 AGAGTTGCCATGAGCTATAATCG 58.436 43.478 0.00 0.00 44.23 3.34
69 70 6.929625 TCTAGAGTTGCCATGAGCTATAATC 58.070 40.000 0.00 0.00 44.23 1.75
70 71 6.924913 TCTAGAGTTGCCATGAGCTATAAT 57.075 37.500 0.00 0.00 44.23 1.28
71 72 6.731292 TTCTAGAGTTGCCATGAGCTATAA 57.269 37.500 0.00 0.00 44.23 0.98
72 73 6.731292 TTTCTAGAGTTGCCATGAGCTATA 57.269 37.500 0.00 0.00 44.23 1.31
73 74 5.620738 TTTCTAGAGTTGCCATGAGCTAT 57.379 39.130 0.00 0.00 44.23 2.97
74 75 5.620738 ATTTCTAGAGTTGCCATGAGCTA 57.379 39.130 0.00 0.00 44.23 3.32
75 76 3.988976 TTTCTAGAGTTGCCATGAGCT 57.011 42.857 0.00 0.00 44.23 4.09
76 77 5.573337 AAATTTCTAGAGTTGCCATGAGC 57.427 39.130 0.00 0.00 44.14 4.26
113 114 9.516314 GTTGCTTCAGTTTTAAGTTTGAATAGT 57.484 29.630 0.00 0.00 0.00 2.12
114 115 9.736023 AGTTGCTTCAGTTTTAAGTTTGAATAG 57.264 29.630 0.00 0.00 0.00 1.73
116 117 9.435688 AAAGTTGCTTCAGTTTTAAGTTTGAAT 57.564 25.926 0.00 0.00 0.00 2.57
117 118 8.825667 AAAGTTGCTTCAGTTTTAAGTTTGAA 57.174 26.923 0.00 0.00 0.00 2.69
118 119 8.707839 CAAAAGTTGCTTCAGTTTTAAGTTTGA 58.292 29.630 0.00 0.00 0.00 2.69
119 120 8.864260 CAAAAGTTGCTTCAGTTTTAAGTTTG 57.136 30.769 0.00 0.00 0.00 2.93
140 141 2.887783 TGATGCGTCTTTTAGGGCAAAA 59.112 40.909 7.58 0.00 39.09 2.44
141 142 2.509569 TGATGCGTCTTTTAGGGCAAA 58.490 42.857 7.58 0.00 39.09 3.68
142 143 2.192664 TGATGCGTCTTTTAGGGCAA 57.807 45.000 7.58 0.00 39.09 4.52
143 144 2.192664 TTGATGCGTCTTTTAGGGCA 57.807 45.000 7.58 0.00 40.06 5.36
144 145 2.159379 CCTTTGATGCGTCTTTTAGGGC 60.159 50.000 7.58 0.00 0.00 5.19
145 146 3.343617 TCCTTTGATGCGTCTTTTAGGG 58.656 45.455 7.58 0.80 0.00 3.53
146 147 6.677781 TTATCCTTTGATGCGTCTTTTAGG 57.322 37.500 7.58 8.36 32.18 2.69
147 148 8.964420 TTTTTATCCTTTGATGCGTCTTTTAG 57.036 30.769 7.58 0.00 32.18 1.85
169 170 9.709495 TGTACGTGGTAGAACTATGTAATTTTT 57.291 29.630 0.00 0.00 33.76 1.94
170 171 9.362539 CTGTACGTGGTAGAACTATGTAATTTT 57.637 33.333 0.00 0.00 33.76 1.82
171 172 8.742777 TCTGTACGTGGTAGAACTATGTAATTT 58.257 33.333 0.00 0.00 33.76 1.82
172 173 8.186821 GTCTGTACGTGGTAGAACTATGTAATT 58.813 37.037 0.00 0.00 33.76 1.40
173 174 7.337689 TGTCTGTACGTGGTAGAACTATGTAAT 59.662 37.037 0.00 0.00 33.76 1.89
174 175 6.654582 TGTCTGTACGTGGTAGAACTATGTAA 59.345 38.462 0.00 0.00 33.76 2.41
175 176 6.172630 TGTCTGTACGTGGTAGAACTATGTA 58.827 40.000 0.00 0.00 31.15 2.29
176 177 5.005740 TGTCTGTACGTGGTAGAACTATGT 58.994 41.667 0.00 0.00 33.31 2.29
177 178 5.556355 TGTCTGTACGTGGTAGAACTATG 57.444 43.478 0.00 0.00 0.00 2.23
178 179 6.770746 ATTGTCTGTACGTGGTAGAACTAT 57.229 37.500 0.00 0.00 0.00 2.12
179 180 6.579666 AATTGTCTGTACGTGGTAGAACTA 57.420 37.500 0.00 0.00 0.00 2.24
180 181 5.464030 AATTGTCTGTACGTGGTAGAACT 57.536 39.130 0.00 0.00 0.00 3.01
181 182 5.574443 GGTAATTGTCTGTACGTGGTAGAAC 59.426 44.000 0.00 0.00 0.00 3.01
182 183 5.477984 AGGTAATTGTCTGTACGTGGTAGAA 59.522 40.000 0.00 0.00 0.00 2.10
183 184 5.012239 AGGTAATTGTCTGTACGTGGTAGA 58.988 41.667 0.00 0.00 0.00 2.59
184 185 5.125097 AGAGGTAATTGTCTGTACGTGGTAG 59.875 44.000 0.00 0.00 0.00 3.18
185 186 5.012239 AGAGGTAATTGTCTGTACGTGGTA 58.988 41.667 0.00 0.00 0.00 3.25
186 187 3.830755 AGAGGTAATTGTCTGTACGTGGT 59.169 43.478 0.00 0.00 0.00 4.16
187 188 4.421948 GAGAGGTAATTGTCTGTACGTGG 58.578 47.826 0.00 0.00 0.00 4.94
188 189 4.158025 AGGAGAGGTAATTGTCTGTACGTG 59.842 45.833 0.00 0.00 0.00 4.49
189 190 4.342359 AGGAGAGGTAATTGTCTGTACGT 58.658 43.478 0.00 0.00 0.00 3.57
190 191 4.985538 AGGAGAGGTAATTGTCTGTACG 57.014 45.455 0.00 0.00 0.00 3.67
191 192 7.981102 AAAAAGGAGAGGTAATTGTCTGTAC 57.019 36.000 0.00 0.00 0.00 2.90
224 225 5.656859 GGTATCCTAGCCATTGGTTCTTTTT 59.343 40.000 4.26 0.00 0.00 1.94
225 226 5.201243 GGTATCCTAGCCATTGGTTCTTTT 58.799 41.667 4.26 0.00 0.00 2.27
226 227 4.229582 TGGTATCCTAGCCATTGGTTCTTT 59.770 41.667 4.26 0.00 0.00 2.52
227 228 3.785887 TGGTATCCTAGCCATTGGTTCTT 59.214 43.478 4.26 0.00 0.00 2.52
228 229 3.393687 TGGTATCCTAGCCATTGGTTCT 58.606 45.455 4.26 0.00 0.00 3.01
229 230 3.857157 TGGTATCCTAGCCATTGGTTC 57.143 47.619 4.26 0.00 0.00 3.62
230 231 4.601406 TTTGGTATCCTAGCCATTGGTT 57.399 40.909 4.26 0.04 34.37 3.67
231 232 4.601406 TTTTGGTATCCTAGCCATTGGT 57.399 40.909 4.26 0.00 34.37 3.67
232 233 4.895297 ACATTTTGGTATCCTAGCCATTGG 59.105 41.667 0.00 0.00 34.37 3.16
233 234 5.593909 TGACATTTTGGTATCCTAGCCATTG 59.406 40.000 0.00 0.00 34.37 2.82
234 235 5.765510 TGACATTTTGGTATCCTAGCCATT 58.234 37.500 0.00 0.00 34.37 3.16
235 236 5.387113 TGACATTTTGGTATCCTAGCCAT 57.613 39.130 0.00 0.00 34.37 4.40
236 237 4.853468 TGACATTTTGGTATCCTAGCCA 57.147 40.909 0.00 0.00 0.00 4.75
237 238 6.715347 AAATGACATTTTGGTATCCTAGCC 57.285 37.500 7.62 0.00 0.00 3.93
270 271 9.382244 GGTGCGAAAAATATATATTCTTGTGTC 57.618 33.333 8.42 0.00 0.00 3.67
271 272 8.349983 GGGTGCGAAAAATATATATTCTTGTGT 58.650 33.333 8.42 0.00 0.00 3.72
272 273 8.349245 TGGGTGCGAAAAATATATATTCTTGTG 58.651 33.333 8.42 0.00 0.00 3.33
273 274 8.458573 TGGGTGCGAAAAATATATATTCTTGT 57.541 30.769 8.42 0.00 0.00 3.16
274 275 9.912634 ATTGGGTGCGAAAAATATATATTCTTG 57.087 29.630 8.42 4.84 0.00 3.02
280 281 9.666626 CGTTAAATTGGGTGCGAAAAATATATA 57.333 29.630 0.00 0.00 0.00 0.86
281 282 8.192110 ACGTTAAATTGGGTGCGAAAAATATAT 58.808 29.630 0.00 0.00 0.00 0.86
282 283 7.485277 CACGTTAAATTGGGTGCGAAAAATATA 59.515 33.333 0.00 0.00 0.00 0.86
283 284 6.309251 CACGTTAAATTGGGTGCGAAAAATAT 59.691 34.615 0.00 0.00 0.00 1.28
284 285 5.629849 CACGTTAAATTGGGTGCGAAAAATA 59.370 36.000 0.00 0.00 0.00 1.40
285 286 4.446051 CACGTTAAATTGGGTGCGAAAAAT 59.554 37.500 0.00 0.00 0.00 1.82
286 287 3.797256 CACGTTAAATTGGGTGCGAAAAA 59.203 39.130 0.00 0.00 0.00 1.94
287 288 3.181489 ACACGTTAAATTGGGTGCGAAAA 60.181 39.130 0.00 0.00 33.81 2.29
288 289 2.358267 ACACGTTAAATTGGGTGCGAAA 59.642 40.909 0.00 0.00 33.81 3.46
289 290 1.948145 ACACGTTAAATTGGGTGCGAA 59.052 42.857 0.00 0.00 33.81 4.70
290 291 1.595466 ACACGTTAAATTGGGTGCGA 58.405 45.000 0.00 0.00 33.81 5.10
291 292 2.223611 TGTACACGTTAAATTGGGTGCG 59.776 45.455 0.00 0.00 33.81 5.34
292 293 3.251487 AGTGTACACGTTAAATTGGGTGC 59.749 43.478 19.93 0.00 36.20 5.01
293 294 5.007823 TCAAGTGTACACGTTAAATTGGGTG 59.992 40.000 19.93 1.75 36.20 4.61
294 295 5.124645 TCAAGTGTACACGTTAAATTGGGT 58.875 37.500 19.93 0.00 36.20 4.51
295 296 5.676532 TCAAGTGTACACGTTAAATTGGG 57.323 39.130 19.93 3.13 36.20 4.12
296 297 7.129109 AGATCAAGTGTACACGTTAAATTGG 57.871 36.000 19.93 3.83 36.20 3.16
305 306 9.262472 GCTTTAATTAAAGATCAAGTGTACACG 57.738 33.333 32.56 7.43 44.07 4.49
310 311 9.630098 CACATGCTTTAATTAAAGATCAAGTGT 57.370 29.630 32.56 21.71 44.07 3.55
311 312 9.630098 ACACATGCTTTAATTAAAGATCAAGTG 57.370 29.630 32.56 30.28 44.07 3.16
312 313 9.630098 CACACATGCTTTAATTAAAGATCAAGT 57.370 29.630 32.56 22.94 44.07 3.16
313 314 9.844790 TCACACATGCTTTAATTAAAGATCAAG 57.155 29.630 32.56 22.45 44.07 3.02
374 375 7.441157 CACACACTCCTCACTTCATACTAAAAA 59.559 37.037 0.00 0.00 0.00 1.94
375 376 6.929049 CACACACTCCTCACTTCATACTAAAA 59.071 38.462 0.00 0.00 0.00 1.52
376 377 6.455647 CACACACTCCTCACTTCATACTAAA 58.544 40.000 0.00 0.00 0.00 1.85
377 378 5.566826 GCACACACTCCTCACTTCATACTAA 60.567 44.000 0.00 0.00 0.00 2.24
378 379 4.082190 GCACACACTCCTCACTTCATACTA 60.082 45.833 0.00 0.00 0.00 1.82
379 380 3.306364 GCACACACTCCTCACTTCATACT 60.306 47.826 0.00 0.00 0.00 2.12
380 381 2.996621 GCACACACTCCTCACTTCATAC 59.003 50.000 0.00 0.00 0.00 2.39
381 382 2.899900 AGCACACACTCCTCACTTCATA 59.100 45.455 0.00 0.00 0.00 2.15
382 383 1.696336 AGCACACACTCCTCACTTCAT 59.304 47.619 0.00 0.00 0.00 2.57
383 384 1.123077 AGCACACACTCCTCACTTCA 58.877 50.000 0.00 0.00 0.00 3.02
384 385 2.610727 GGTAGCACACACTCCTCACTTC 60.611 54.545 0.00 0.00 0.00 3.01
385 386 1.344763 GGTAGCACACACTCCTCACTT 59.655 52.381 0.00 0.00 0.00 3.16
386 387 0.969894 GGTAGCACACACTCCTCACT 59.030 55.000 0.00 0.00 0.00 3.41
387 388 0.388649 CGGTAGCACACACTCCTCAC 60.389 60.000 0.00 0.00 0.00 3.51
388 389 0.538746 TCGGTAGCACACACTCCTCA 60.539 55.000 0.00 0.00 0.00 3.86
389 390 0.171455 CTCGGTAGCACACACTCCTC 59.829 60.000 0.00 0.00 0.00 3.71
390 391 2.268022 CTCGGTAGCACACACTCCT 58.732 57.895 0.00 0.00 0.00 3.69
391 392 4.891566 CTCGGTAGCACACACTCC 57.108 61.111 0.00 0.00 0.00 3.85
401 402 4.261405 CCTGATACTTTCTCAGCTCGGTAG 60.261 50.000 0.00 0.00 39.04 3.18
402 403 3.632604 CCTGATACTTTCTCAGCTCGGTA 59.367 47.826 0.00 0.00 39.04 4.02
403 404 2.428890 CCTGATACTTTCTCAGCTCGGT 59.571 50.000 0.00 0.00 39.04 4.69
404 405 2.428890 ACCTGATACTTTCTCAGCTCGG 59.571 50.000 0.00 0.00 39.04 4.63
405 406 3.443037 CACCTGATACTTTCTCAGCTCG 58.557 50.000 0.00 0.00 39.04 5.03
406 407 3.118811 AGCACCTGATACTTTCTCAGCTC 60.119 47.826 0.00 0.00 39.04 4.09
407 408 2.836981 AGCACCTGATACTTTCTCAGCT 59.163 45.455 0.00 0.00 39.04 4.24
408 409 3.258971 AGCACCTGATACTTTCTCAGC 57.741 47.619 0.00 0.00 39.04 4.26
409 410 4.187694 GGAAGCACCTGATACTTTCTCAG 58.812 47.826 0.00 0.00 39.88 3.35
410 411 3.582647 TGGAAGCACCTGATACTTTCTCA 59.417 43.478 1.91 0.00 39.86 3.27
411 412 4.187694 CTGGAAGCACCTGATACTTTCTC 58.812 47.826 1.91 0.00 39.52 2.87
412 413 4.213564 CTGGAAGCACCTGATACTTTCT 57.786 45.455 1.91 0.00 39.52 2.52
443 444 1.588597 CGAGAGCACTCAAGGCTGA 59.411 57.895 11.83 0.00 42.78 4.26
444 445 4.182132 CGAGAGCACTCAAGGCTG 57.818 61.111 11.83 0.00 42.78 4.85
456 457 2.299993 TAACATTGGAGCAGCGAGAG 57.700 50.000 0.00 0.00 0.00 3.20
457 458 2.760634 TTAACATTGGAGCAGCGAGA 57.239 45.000 0.00 0.00 0.00 4.04
458 459 3.829886 TTTTAACATTGGAGCAGCGAG 57.170 42.857 0.00 0.00 0.00 5.03
493 494 9.384764 ACAATTTTTCGGGATTTTTCTTAAACA 57.615 25.926 0.00 0.00 0.00 2.83
494 495 9.644993 CACAATTTTTCGGGATTTTTCTTAAAC 57.355 29.630 0.00 0.00 0.00 2.01
495 496 9.601217 TCACAATTTTTCGGGATTTTTCTTAAA 57.399 25.926 0.00 0.00 0.00 1.52
496 497 9.601217 TTCACAATTTTTCGGGATTTTTCTTAA 57.399 25.926 0.00 0.00 0.00 1.85
497 498 9.771534 ATTCACAATTTTTCGGGATTTTTCTTA 57.228 25.926 0.00 0.00 0.00 2.10
498 499 8.558700 CATTCACAATTTTTCGGGATTTTTCTT 58.441 29.630 0.00 0.00 0.00 2.52
499 500 7.714813 ACATTCACAATTTTTCGGGATTTTTCT 59.285 29.630 0.00 0.00 0.00 2.52
500 501 7.860613 ACATTCACAATTTTTCGGGATTTTTC 58.139 30.769 0.00 0.00 0.00 2.29
501 502 7.800155 ACATTCACAATTTTTCGGGATTTTT 57.200 28.000 0.00 0.00 0.00 1.94
502 503 7.497249 TGAACATTCACAATTTTTCGGGATTTT 59.503 29.630 0.00 0.00 31.01 1.82
503 504 6.989169 TGAACATTCACAATTTTTCGGGATTT 59.011 30.769 0.00 0.00 31.01 2.17
504 505 6.520272 TGAACATTCACAATTTTTCGGGATT 58.480 32.000 0.00 0.00 31.01 3.01
505 506 6.095432 TGAACATTCACAATTTTTCGGGAT 57.905 33.333 0.00 0.00 31.01 3.85
506 507 5.521906 TGAACATTCACAATTTTTCGGGA 57.478 34.783 0.00 0.00 31.01 5.14
507 508 7.881643 TTATGAACATTCACAATTTTTCGGG 57.118 32.000 0.00 0.00 40.49 5.14
508 509 9.190858 TCTTTATGAACATTCACAATTTTTCGG 57.809 29.630 0.00 0.00 40.49 4.30
525 526 9.182214 AGGTACTATAGTCACGTTCTTTATGAA 57.818 33.333 9.12 0.00 36.02 2.57
526 527 8.743085 AGGTACTATAGTCACGTTCTTTATGA 57.257 34.615 9.12 0.00 36.02 2.15
612 613 9.646427 TGTTGCTTTTGTCTTTTTACACTATTT 57.354 25.926 0.00 0.00 0.00 1.40
613 614 9.816354 ATGTTGCTTTTGTCTTTTTACACTATT 57.184 25.926 0.00 0.00 0.00 1.73
614 615 9.816354 AATGTTGCTTTTGTCTTTTTACACTAT 57.184 25.926 0.00 0.00 0.00 2.12
615 616 9.081997 CAATGTTGCTTTTGTCTTTTTACACTA 57.918 29.630 0.00 0.00 0.00 2.74
616 617 7.816995 TCAATGTTGCTTTTGTCTTTTTACACT 59.183 29.630 0.00 0.00 0.00 3.55
617 618 7.897800 GTCAATGTTGCTTTTGTCTTTTTACAC 59.102 33.333 0.00 0.00 0.00 2.90
618 619 7.600375 TGTCAATGTTGCTTTTGTCTTTTTACA 59.400 29.630 0.00 0.00 0.00 2.41
619 620 7.897800 GTGTCAATGTTGCTTTTGTCTTTTTAC 59.102 33.333 0.00 0.00 0.00 2.01
620 621 7.064016 GGTGTCAATGTTGCTTTTGTCTTTTTA 59.936 33.333 0.00 0.00 0.00 1.52
621 622 6.128309 GGTGTCAATGTTGCTTTTGTCTTTTT 60.128 34.615 0.00 0.00 0.00 1.94
622 623 5.351189 GGTGTCAATGTTGCTTTTGTCTTTT 59.649 36.000 0.00 0.00 0.00 2.27
623 624 4.869861 GGTGTCAATGTTGCTTTTGTCTTT 59.130 37.500 0.00 0.00 0.00 2.52
624 625 4.081752 TGGTGTCAATGTTGCTTTTGTCTT 60.082 37.500 0.00 0.00 0.00 3.01
625 626 3.446873 TGGTGTCAATGTTGCTTTTGTCT 59.553 39.130 0.00 0.00 0.00 3.41
626 627 3.779759 TGGTGTCAATGTTGCTTTTGTC 58.220 40.909 0.00 0.00 0.00 3.18
627 628 3.883830 TGGTGTCAATGTTGCTTTTGT 57.116 38.095 0.00 0.00 0.00 2.83
628 629 6.257411 TGTTAATGGTGTCAATGTTGCTTTTG 59.743 34.615 0.00 0.00 0.00 2.44
629 630 6.344500 TGTTAATGGTGTCAATGTTGCTTTT 58.656 32.000 0.00 0.00 0.00 2.27
630 631 5.911752 TGTTAATGGTGTCAATGTTGCTTT 58.088 33.333 0.00 0.00 0.00 3.51
631 632 5.528043 TGTTAATGGTGTCAATGTTGCTT 57.472 34.783 0.00 0.00 0.00 3.91
632 633 5.726980 ATGTTAATGGTGTCAATGTTGCT 57.273 34.783 0.00 0.00 0.00 3.91
633 634 9.579768 TTTATATGTTAATGGTGTCAATGTTGC 57.420 29.630 0.00 0.00 0.00 4.17
655 656 9.639563 ATTGGGAAACAAAAAGGACAAATTTAT 57.360 25.926 0.00 0.00 43.46 1.40
656 657 8.897752 CATTGGGAAACAAAAAGGACAAATTTA 58.102 29.630 0.00 0.00 43.46 1.40
657 658 7.630297 GCATTGGGAAACAAAAAGGACAAATTT 60.630 33.333 0.00 0.00 43.46 1.82
658 659 6.183360 GCATTGGGAAACAAAAAGGACAAATT 60.183 34.615 0.00 0.00 43.46 1.82
659 660 5.299028 GCATTGGGAAACAAAAAGGACAAAT 59.701 36.000 0.00 0.00 43.46 2.32
660 661 4.637977 GCATTGGGAAACAAAAAGGACAAA 59.362 37.500 0.00 0.00 43.46 2.83
661 662 4.195416 GCATTGGGAAACAAAAAGGACAA 58.805 39.130 0.00 0.00 43.46 3.18
662 663 3.432890 GGCATTGGGAAACAAAAAGGACA 60.433 43.478 0.00 0.00 43.46 4.02
663 664 3.138304 GGCATTGGGAAACAAAAAGGAC 58.862 45.455 0.00 0.00 43.46 3.85
664 665 2.774234 TGGCATTGGGAAACAAAAAGGA 59.226 40.909 0.00 0.00 43.46 3.36
665 666 3.205784 TGGCATTGGGAAACAAAAAGG 57.794 42.857 0.00 0.00 43.46 3.11
666 667 5.560567 CGAAATGGCATTGGGAAACAAAAAG 60.561 40.000 14.47 0.00 43.46 2.27
667 668 4.274459 CGAAATGGCATTGGGAAACAAAAA 59.726 37.500 14.47 0.00 43.46 1.94
668 669 3.812053 CGAAATGGCATTGGGAAACAAAA 59.188 39.130 14.47 0.00 43.46 2.44
669 670 3.070159 TCGAAATGGCATTGGGAAACAAA 59.930 39.130 14.47 0.00 43.46 2.83
670 671 2.630098 TCGAAATGGCATTGGGAAACAA 59.370 40.909 14.47 0.00 44.54 2.83
671 672 2.230992 CTCGAAATGGCATTGGGAAACA 59.769 45.455 14.47 0.00 0.00 2.83
672 673 2.231235 ACTCGAAATGGCATTGGGAAAC 59.769 45.455 14.47 1.32 0.00 2.78
673 674 2.524306 ACTCGAAATGGCATTGGGAAA 58.476 42.857 14.47 0.00 0.00 3.13
674 675 2.214376 ACTCGAAATGGCATTGGGAA 57.786 45.000 14.47 0.00 0.00 3.97
675 676 2.214376 AACTCGAAATGGCATTGGGA 57.786 45.000 14.47 12.67 0.00 4.37
676 677 2.609350 CAAACTCGAAATGGCATTGGG 58.391 47.619 14.47 8.86 0.00 4.12
677 678 2.230992 TCCAAACTCGAAATGGCATTGG 59.769 45.455 14.47 9.63 37.71 3.16
678 679 3.244976 GTCCAAACTCGAAATGGCATTG 58.755 45.455 14.47 3.51 34.13 2.82
679 680 2.231235 GGTCCAAACTCGAAATGGCATT 59.769 45.455 6.96 6.96 34.13 3.56
680 681 1.818674 GGTCCAAACTCGAAATGGCAT 59.181 47.619 0.00 0.00 34.13 4.40
681 682 1.202879 AGGTCCAAACTCGAAATGGCA 60.203 47.619 6.03 0.00 34.13 4.92
682 683 1.200020 CAGGTCCAAACTCGAAATGGC 59.800 52.381 6.03 2.67 34.13 4.40
683 684 2.778299 TCAGGTCCAAACTCGAAATGG 58.222 47.619 4.78 4.78 35.49 3.16
684 685 4.829064 TTTCAGGTCCAAACTCGAAATG 57.171 40.909 0.00 0.00 0.00 2.32
685 686 5.770162 AGAATTTCAGGTCCAAACTCGAAAT 59.230 36.000 0.00 0.00 37.59 2.17
686 687 5.130350 AGAATTTCAGGTCCAAACTCGAAA 58.870 37.500 0.00 0.00 33.30 3.46
687 688 4.714632 AGAATTTCAGGTCCAAACTCGAA 58.285 39.130 0.00 0.00 0.00 3.71
688 689 4.351874 AGAATTTCAGGTCCAAACTCGA 57.648 40.909 0.00 0.00 0.00 4.04
689 690 5.390991 GCTAAGAATTTCAGGTCCAAACTCG 60.391 44.000 0.00 0.00 0.00 4.18
690 691 5.390991 CGCTAAGAATTTCAGGTCCAAACTC 60.391 44.000 0.00 0.00 0.00 3.01
691 692 4.455877 CGCTAAGAATTTCAGGTCCAAACT 59.544 41.667 0.00 0.00 0.00 2.66
692 693 4.379499 CCGCTAAGAATTTCAGGTCCAAAC 60.379 45.833 0.00 0.00 0.00 2.93
693 694 3.756434 CCGCTAAGAATTTCAGGTCCAAA 59.244 43.478 0.00 0.00 0.00 3.28
694 695 3.244770 ACCGCTAAGAATTTCAGGTCCAA 60.245 43.478 0.00 0.00 0.00 3.53
695 696 2.304761 ACCGCTAAGAATTTCAGGTCCA 59.695 45.455 0.00 0.00 0.00 4.02
696 697 2.987232 ACCGCTAAGAATTTCAGGTCC 58.013 47.619 0.00 0.00 0.00 4.46
697 698 3.751698 ACAACCGCTAAGAATTTCAGGTC 59.248 43.478 0.00 0.00 0.00 3.85
698 699 3.751518 ACAACCGCTAAGAATTTCAGGT 58.248 40.909 0.00 0.00 0.00 4.00
699 700 4.935808 ACTACAACCGCTAAGAATTTCAGG 59.064 41.667 0.00 0.00 0.00 3.86
700 701 5.637810 TGACTACAACCGCTAAGAATTTCAG 59.362 40.000 0.00 0.00 0.00 3.02
701 702 5.407387 GTGACTACAACCGCTAAGAATTTCA 59.593 40.000 0.00 0.00 0.00 2.69
702 703 5.407387 TGTGACTACAACCGCTAAGAATTTC 59.593 40.000 0.00 0.00 32.88 2.17
703 704 5.302360 TGTGACTACAACCGCTAAGAATTT 58.698 37.500 0.00 0.00 32.88 1.82
704 705 4.890088 TGTGACTACAACCGCTAAGAATT 58.110 39.130 0.00 0.00 32.88 2.17
705 706 4.530710 TGTGACTACAACCGCTAAGAAT 57.469 40.909 0.00 0.00 32.88 2.40
706 707 4.530710 ATGTGACTACAACCGCTAAGAA 57.469 40.909 0.00 0.00 40.84 2.52
707 708 4.491676 GAATGTGACTACAACCGCTAAGA 58.508 43.478 0.00 0.00 40.84 2.10
708 709 3.617263 GGAATGTGACTACAACCGCTAAG 59.383 47.826 0.00 0.00 40.84 2.18
709 710 3.259876 AGGAATGTGACTACAACCGCTAA 59.740 43.478 0.00 0.00 40.84 3.09
710 711 2.829720 AGGAATGTGACTACAACCGCTA 59.170 45.455 0.00 0.00 40.84 4.26
711 712 1.623811 AGGAATGTGACTACAACCGCT 59.376 47.619 0.00 0.00 40.84 5.52
712 713 2.000447 GAGGAATGTGACTACAACCGC 59.000 52.381 0.00 0.00 40.84 5.68
713 714 2.259618 CGAGGAATGTGACTACAACCG 58.740 52.381 0.00 0.00 40.84 4.44
714 715 3.314541 ACGAGGAATGTGACTACAACC 57.685 47.619 0.00 0.00 40.84 3.77
715 716 4.326548 GCTTACGAGGAATGTGACTACAAC 59.673 45.833 0.00 0.00 40.84 3.32
716 717 4.491676 GCTTACGAGGAATGTGACTACAA 58.508 43.478 0.00 0.00 40.84 2.41
717 718 3.427098 CGCTTACGAGGAATGTGACTACA 60.427 47.826 0.00 0.00 43.93 2.74
718 719 3.106672 CGCTTACGAGGAATGTGACTAC 58.893 50.000 0.00 0.00 43.93 2.73
719 720 2.751259 ACGCTTACGAGGAATGTGACTA 59.249 45.455 0.00 0.00 43.93 2.59
720 721 1.544691 ACGCTTACGAGGAATGTGACT 59.455 47.619 0.00 0.00 43.93 3.41
721 722 1.992170 ACGCTTACGAGGAATGTGAC 58.008 50.000 0.00 0.00 43.93 3.67
722 723 2.029739 TGAACGCTTACGAGGAATGTGA 60.030 45.455 0.00 0.00 43.93 3.58
723 724 2.333926 TGAACGCTTACGAGGAATGTG 58.666 47.619 0.00 0.00 43.93 3.21
724 725 2.736144 TGAACGCTTACGAGGAATGT 57.264 45.000 0.00 0.00 43.93 2.71
725 726 5.907197 AATATGAACGCTTACGAGGAATG 57.093 39.130 0.00 0.00 43.93 2.67
726 727 6.920569 AAAATATGAACGCTTACGAGGAAT 57.079 33.333 0.00 0.00 43.93 3.01
727 728 6.730960 AAAAATATGAACGCTTACGAGGAA 57.269 33.333 0.00 0.00 43.93 3.36
772 773 8.394121 GCTCCAATGTCACAAAAACATTTTTAA 58.606 29.630 2.14 0.00 43.08 1.52
773 774 7.550551 TGCTCCAATGTCACAAAAACATTTTTA 59.449 29.630 2.14 0.00 43.08 1.52
774 775 6.373774 TGCTCCAATGTCACAAAAACATTTTT 59.626 30.769 0.00 0.00 43.08 1.94
775 776 5.879223 TGCTCCAATGTCACAAAAACATTTT 59.121 32.000 0.00 0.00 43.08 1.82
776 777 5.294060 GTGCTCCAATGTCACAAAAACATTT 59.706 36.000 0.00 0.00 43.08 2.32
777 778 4.810491 GTGCTCCAATGTCACAAAAACATT 59.190 37.500 0.00 0.00 45.73 2.71
778 779 4.370917 GTGCTCCAATGTCACAAAAACAT 58.629 39.130 0.00 0.00 38.98 2.71
779 780 3.430098 GGTGCTCCAATGTCACAAAAACA 60.430 43.478 0.00 0.00 32.69 2.83
780 781 3.123050 GGTGCTCCAATGTCACAAAAAC 58.877 45.455 0.00 0.00 32.69 2.43
781 782 2.223688 CGGTGCTCCAATGTCACAAAAA 60.224 45.455 5.52 0.00 32.69 1.94
782 783 1.336440 CGGTGCTCCAATGTCACAAAA 59.664 47.619 5.52 0.00 32.69 2.44
783 784 0.950836 CGGTGCTCCAATGTCACAAA 59.049 50.000 5.52 0.00 32.69 2.83
784 785 0.888736 CCGGTGCTCCAATGTCACAA 60.889 55.000 5.52 0.00 32.69 3.33
785 786 1.302431 CCGGTGCTCCAATGTCACA 60.302 57.895 5.52 0.00 32.69 3.58
786 787 2.040544 CCCGGTGCTCCAATGTCAC 61.041 63.158 0.00 0.00 0.00 3.67
787 788 2.184020 CTCCCGGTGCTCCAATGTCA 62.184 60.000 0.00 0.00 0.00 3.58
788 789 1.450312 CTCCCGGTGCTCCAATGTC 60.450 63.158 0.00 0.00 0.00 3.06
789 790 2.671070 CTCCCGGTGCTCCAATGT 59.329 61.111 0.00 0.00 0.00 2.71
790 791 2.124570 CCTCCCGGTGCTCCAATG 60.125 66.667 0.00 0.00 0.00 2.82
791 792 2.285368 TCCTCCCGGTGCTCCAAT 60.285 61.111 0.00 0.00 0.00 3.16
792 793 2.449967 TACTCCTCCCGGTGCTCCAA 62.450 60.000 0.00 0.00 0.00 3.53
793 794 2.926326 TACTCCTCCCGGTGCTCCA 61.926 63.158 0.00 0.00 0.00 3.86
794 795 2.043248 TACTCCTCCCGGTGCTCC 60.043 66.667 0.00 0.00 0.00 4.70
795 796 2.424733 GGTACTCCTCCCGGTGCTC 61.425 68.421 0.00 0.00 0.00 4.26
796 797 2.363925 GGTACTCCTCCCGGTGCT 60.364 66.667 0.00 0.00 0.00 4.40
797 798 3.468140 GGGTACTCCTCCCGGTGC 61.468 72.222 0.00 0.00 35.27 5.01
798 799 2.762875 GGGGTACTCCTCCCGGTG 60.763 72.222 3.84 0.00 45.46 4.94
799 800 2.817420 CTTGGGGTACTCCTCCCGGT 62.817 65.000 14.34 0.00 46.03 5.28
800 801 2.039951 TTGGGGTACTCCTCCCGG 59.960 66.667 14.34 0.00 46.03 5.73
801 802 0.398664 ATCTTGGGGTACTCCTCCCG 60.399 60.000 14.34 0.00 46.03 5.14
802 803 1.062044 AGATCTTGGGGTACTCCTCCC 60.062 57.143 14.34 5.60 43.90 4.30
803 804 2.321719 GAGATCTTGGGGTACTCCTCC 58.678 57.143 14.34 0.00 32.02 4.30
804 805 1.957877 CGAGATCTTGGGGTACTCCTC 59.042 57.143 14.34 1.50 35.33 3.71
805 806 1.569548 TCGAGATCTTGGGGTACTCCT 59.430 52.381 14.34 0.00 35.33 3.69
806 807 1.682323 GTCGAGATCTTGGGGTACTCC 59.318 57.143 4.21 4.21 0.00 3.85
807 808 1.334243 CGTCGAGATCTTGGGGTACTC 59.666 57.143 10.19 0.00 0.00 2.59
808 809 1.390565 CGTCGAGATCTTGGGGTACT 58.609 55.000 10.19 0.00 0.00 2.73
809 810 0.384669 CCGTCGAGATCTTGGGGTAC 59.615 60.000 10.19 0.13 0.00 3.34
810 811 0.033796 ACCGTCGAGATCTTGGGGTA 60.034 55.000 19.37 0.00 0.00 3.69
811 812 1.305046 ACCGTCGAGATCTTGGGGT 60.305 57.895 16.59 16.59 0.00 4.95
812 813 1.141881 CACCGTCGAGATCTTGGGG 59.858 63.158 10.19 13.39 0.00 4.96
813 814 0.101399 CTCACCGTCGAGATCTTGGG 59.899 60.000 10.19 6.89 34.79 4.12
814 815 1.095600 TCTCACCGTCGAGATCTTGG 58.904 55.000 10.19 6.43 37.12 3.61
815 816 2.921634 TTCTCACCGTCGAGATCTTG 57.078 50.000 3.24 3.24 41.58 3.02
816 817 2.099921 CCATTCTCACCGTCGAGATCTT 59.900 50.000 0.00 0.00 41.58 2.40
862 866 1.199229 CTTGTCTCATCGCGCTCTCG 61.199 60.000 5.56 0.00 39.07 4.04
863 867 0.869454 CCTTGTCTCATCGCGCTCTC 60.869 60.000 5.56 0.00 0.00 3.20
864 868 1.140589 CCTTGTCTCATCGCGCTCT 59.859 57.895 5.56 0.00 0.00 4.09
865 869 0.458543 TTCCTTGTCTCATCGCGCTC 60.459 55.000 5.56 0.00 0.00 5.03
866 870 0.459237 CTTCCTTGTCTCATCGCGCT 60.459 55.000 5.56 0.00 0.00 5.92
867 871 1.424493 CCTTCCTTGTCTCATCGCGC 61.424 60.000 0.00 0.00 0.00 6.86
868 872 0.807667 CCCTTCCTTGTCTCATCGCG 60.808 60.000 0.00 0.00 0.00 5.87
876 880 1.685820 CCTCACCCCCTTCCTTGTC 59.314 63.158 0.00 0.00 0.00 3.18
1193 1207 1.392510 GTATTTCGTCGAACAGGTGGC 59.607 52.381 7.29 0.00 0.00 5.01
1317 1331 1.239296 TGTACGAGACGGTGTCCCTG 61.239 60.000 0.00 0.00 32.18 4.45
1455 1469 4.463879 CTCTCCTGGGCCAGTGCG 62.464 72.222 30.68 16.66 38.85 5.34
1530 1544 2.299867 GTTGGTGGCCACAATGAGAAAT 59.700 45.455 35.78 0.00 30.78 2.17
1569 1583 0.748005 AACAAACCTGTGACGCTGCT 60.748 50.000 0.00 0.00 35.37 4.24
1618 1632 6.605849 CATTCCAAGTGACTGTGTTCTTATG 58.394 40.000 0.00 0.00 0.00 1.90
1849 1863 2.605837 TGTCGAGCACACACCTTTAA 57.394 45.000 0.00 0.00 0.00 1.52
1941 1955 1.680338 AATGGATAAGGGTCGCTTGC 58.320 50.000 12.19 4.44 0.00 4.01
2225 2239 3.077359 AGAGTACTTGCCAAAGTGATGC 58.923 45.455 0.00 0.00 46.30 3.91
2227 2241 5.675538 GGATAGAGTACTTGCCAAAGTGAT 58.324 41.667 0.00 0.00 46.30 3.06
2446 2460 2.615912 GGATGGCTAAACTGCAGATGAC 59.384 50.000 23.35 9.68 34.04 3.06
2705 2719 6.291648 TCATAGGCATCATCTGGATAAGAC 57.708 41.667 0.00 0.00 37.88 3.01
2807 2821 3.777087 TCAATCTTGGCCAATTCTTCCA 58.223 40.909 20.85 0.00 0.00 3.53
2886 2900 4.991776 TCACCAAGGACACATTATTCCAA 58.008 39.130 0.00 0.00 33.92 3.53
2904 2918 0.615850 CCTGGAGTTCCTTCCTCACC 59.384 60.000 0.00 0.00 38.12 4.02
2924 2938 6.940298 TCCAGAAAACCTCTCAATATTTTCGT 59.060 34.615 0.00 0.00 42.95 3.85
2934 2948 2.439507 ACTGCTTCCAGAAAACCTCTCA 59.560 45.455 0.00 0.00 41.77 3.27
2972 2986 4.711355 TCCAATCAGGAAATGAAATGACCC 59.289 41.667 0.00 0.00 45.65 4.46
3013 3027 7.484007 CACAAAAGAAACTGCTTGCTATCATAG 59.516 37.037 0.00 0.00 0.00 2.23
3029 3043 9.829507 ACCAAATGAATAATCACACAAAAGAAA 57.170 25.926 0.00 0.00 38.69 2.52
3113 3127 2.857186 TGCCTGTCAGCTTTGTCATA 57.143 45.000 0.00 0.00 0.00 2.15
3114 3128 1.985473 TTGCCTGTCAGCTTTGTCAT 58.015 45.000 0.00 0.00 0.00 3.06
3355 3369 8.906867 CCTGAATAGTCCATGTGATTTTAACAT 58.093 33.333 0.00 0.00 38.81 2.71
3399 3413 7.757173 TGTGAGAAGAAAGACTGATATTTCTCG 59.243 37.037 1.05 0.00 43.90 4.04
3421 3435 8.685427 AGCAAATGTGTAAAGCATATATTGTGA 58.315 29.630 0.00 0.00 0.00 3.58
3440 3454 6.002704 AGAAGGCCTATATCTGAAGCAAATG 58.997 40.000 5.16 0.00 0.00 2.32
3530 3544 6.636044 CAGAGAAGAGCAAATCAAAACTGAAC 59.364 38.462 0.00 0.00 0.00 3.18
3632 3647 1.339631 CCAAACCAGAGGTAATCGGCA 60.340 52.381 0.00 0.00 33.12 5.69
3636 3651 8.803397 ACTATTTTACCAAACCAGAGGTAATC 57.197 34.615 5.03 0.00 46.50 1.75
3720 3735 6.614657 TGAATCATGATCAGTACTCCCTCTA 58.385 40.000 9.06 0.00 0.00 2.43
3792 3808 5.992829 CCACAATGTACCACTGTAAACTACA 59.007 40.000 0.00 0.00 37.13 2.74
3850 3868 2.174360 GAAGCAGCCAATTCTTCCCTT 58.826 47.619 0.00 0.00 32.31 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.