Multiple sequence alignment - TraesCS5B01G393300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G393300 chr5B 100.000 4929 0 0 1 4929 571558566 571553638 0.000000e+00 9103.0
1 TraesCS5B01G393300 chr5B 80.787 1093 176 28 2873 3943 571709407 571708327 0.000000e+00 824.0
2 TraesCS5B01G393300 chr5B 83.479 799 113 17 3152 3936 571718136 571717343 0.000000e+00 726.0
3 TraesCS5B01G393300 chr5B 91.968 498 40 0 3522 4019 572127263 572127760 0.000000e+00 699.0
4 TraesCS5B01G393300 chr5B 76.747 744 122 36 1689 2431 571640313 571639620 7.790000e-98 368.0
5 TraesCS5B01G393300 chr5B 79.775 356 58 11 1696 2049 571719557 571719214 3.810000e-61 246.0
6 TraesCS5B01G393300 chr5B 87.097 93 12 0 3230 3322 572143604 572143696 6.750000e-19 106.0
7 TraesCS5B01G393300 chr5B 92.105 38 3 0 4026 4063 572127789 572127826 2.000000e-03 54.7
8 TraesCS5B01G393300 chr5A 91.093 1976 103 27 726 2673 585213418 585215348 0.000000e+00 2606.0
9 TraesCS5B01G393300 chr5A 95.074 609 28 2 3409 4016 585216077 585216684 0.000000e+00 957.0
10 TraesCS5B01G393300 chr5A 92.857 644 31 7 2744 3381 585215442 585216076 0.000000e+00 920.0
11 TraesCS5B01G393300 chr5A 81.443 1164 170 38 2798 3941 585020316 585021453 0.000000e+00 911.0
12 TraesCS5B01G393300 chr5A 82.094 1089 166 20 2873 3943 585069726 585070803 0.000000e+00 904.0
13 TraesCS5B01G393300 chr5A 78.558 1068 194 28 2873 3919 585077503 585078556 0.000000e+00 671.0
14 TraesCS5B01G393300 chr5A 84.022 726 63 13 28 729 585212619 585213315 0.000000e+00 649.0
15 TraesCS5B01G393300 chr5A 74.698 992 179 47 1691 2658 585068099 585069042 4.660000e-100 375.0
16 TraesCS5B01G393300 chr5A 88.214 280 30 3 4651 4929 585217158 585217435 1.020000e-86 331.0
17 TraesCS5B01G393300 chr5A 90.047 211 18 3 4351 4558 585216944 585217154 2.260000e-68 270.0
18 TraesCS5B01G393300 chr5A 80.165 363 46 19 1693 2049 585019329 585019671 1.060000e-61 248.0
19 TraesCS5B01G393300 chr5A 80.168 358 48 14 1689 2046 585076013 585076347 3.810000e-61 246.0
20 TraesCS5B01G393300 chr5A 83.938 193 16 11 4145 4322 585216754 585216946 2.360000e-38 171.0
21 TraesCS5B01G393300 chr5A 80.851 141 24 1 3185 3322 585236040 585236180 1.880000e-19 108.0
22 TraesCS5B01G393300 chr5A 97.619 42 1 0 4023 4064 585216715 585216756 6.840000e-09 73.1
23 TraesCS5B01G393300 chr5D 89.169 1625 97 26 35 1629 464814312 464815887 0.000000e+00 1953.0
24 TraesCS5B01G393300 chr5D 93.048 1237 52 12 2744 3974 464817376 464818584 0.000000e+00 1777.0
25 TraesCS5B01G393300 chr5D 93.301 1045 44 9 1675 2716 464816293 464817314 0.000000e+00 1519.0
26 TraesCS5B01G393300 chr5D 81.908 1111 168 20 2844 3936 464605234 464606329 0.000000e+00 907.0
27 TraesCS5B01G393300 chr5D 81.577 1091 168 20 2873 3943 464619503 464620580 0.000000e+00 870.0
28 TraesCS5B01G393300 chr5D 78.794 1061 192 25 2873 3913 464659335 464660382 0.000000e+00 682.0
29 TraesCS5B01G393300 chr5D 78.998 519 80 17 2141 2658 464604547 464605037 1.320000e-85 327.0
30 TraesCS5B01G393300 chr5D 80.441 363 46 17 1689 2049 464642280 464642619 2.280000e-63 254.0
31 TraesCS5B01G393300 chr5D 80.168 358 48 14 1696 2049 464604150 464604488 3.810000e-61 246.0
32 TraesCS5B01G393300 chr5D 88.235 153 18 0 1894 2046 464618531 464618683 3.030000e-42 183.0
33 TraesCS5B01G393300 chr5D 89.815 108 11 0 1691 1798 464618018 464618125 6.650000e-29 139.0
34 TraesCS5B01G393300 chr5D 80.851 141 24 2 3185 3322 464918320 464918460 1.880000e-19 108.0
35 TraesCS5B01G393300 chr5D 86.207 58 6 1 4007 4064 464818585 464818640 1.480000e-05 62.1
36 TraesCS5B01G393300 chr3D 91.667 84 7 0 4060 4143 594581109 594581026 3.120000e-22 117.0
37 TraesCS5B01G393300 chr3B 90.805 87 8 0 4061 4147 455140535 455140621 3.120000e-22 117.0
38 TraesCS5B01G393300 chr3B 89.655 87 9 0 4060 4146 603373345 603373259 1.450000e-20 111.0
39 TraesCS5B01G393300 chr3B 89.655 87 9 0 4061 4147 651703747 651703661 1.450000e-20 111.0
40 TraesCS5B01G393300 chr7A 90.698 86 8 0 4062 4147 704610886 704610971 1.120000e-21 115.0
41 TraesCS5B01G393300 chr7A 85.577 104 12 3 4062 4164 697121466 697121365 6.750000e-19 106.0
42 TraesCS5B01G393300 chr1A 89.888 89 9 0 4059 4147 513731261 513731349 1.120000e-21 115.0
43 TraesCS5B01G393300 chr1A 89.888 89 9 0 4059 4147 551582345 551582257 1.120000e-21 115.0
44 TraesCS5B01G393300 chr4D 89.773 88 9 0 4060 4147 423945312 423945399 4.030000e-21 113.0
45 TraesCS5B01G393300 chr2D 94.595 37 1 1 4479 4514 28425118 28425082 6.890000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G393300 chr5B 571553638 571558566 4928 True 9103.000000 9103 100.000000 1 4929 1 chr5B.!!$R1 4928
1 TraesCS5B01G393300 chr5B 571708327 571709407 1080 True 824.000000 824 80.787000 2873 3943 1 chr5B.!!$R3 1070
2 TraesCS5B01G393300 chr5B 571717343 571719557 2214 True 486.000000 726 81.627000 1696 3936 2 chr5B.!!$R4 2240
3 TraesCS5B01G393300 chr5B 572127263 572127826 563 False 376.850000 699 92.036500 3522 4063 2 chr5B.!!$F2 541
4 TraesCS5B01G393300 chr5B 571639620 571640313 693 True 368.000000 368 76.747000 1689 2431 1 chr5B.!!$R2 742
5 TraesCS5B01G393300 chr5A 585212619 585217435 4816 False 747.137500 2606 90.358000 28 4929 8 chr5A.!!$F5 4901
6 TraesCS5B01G393300 chr5A 585068099 585070803 2704 False 639.500000 904 78.396000 1691 3943 2 chr5A.!!$F3 2252
7 TraesCS5B01G393300 chr5A 585019329 585021453 2124 False 579.500000 911 80.804000 1693 3941 2 chr5A.!!$F2 2248
8 TraesCS5B01G393300 chr5A 585076013 585078556 2543 False 458.500000 671 79.363000 1689 3919 2 chr5A.!!$F4 2230
9 TraesCS5B01G393300 chr5D 464814312 464818640 4328 False 1327.775000 1953 90.431250 35 4064 4 chr5D.!!$F6 4029
10 TraesCS5B01G393300 chr5D 464659335 464660382 1047 False 682.000000 682 78.794000 2873 3913 1 chr5D.!!$F2 1040
11 TraesCS5B01G393300 chr5D 464604150 464606329 2179 False 493.333333 907 80.358000 1696 3936 3 chr5D.!!$F4 2240
12 TraesCS5B01G393300 chr5D 464618018 464620580 2562 False 397.333333 870 86.542333 1691 3943 3 chr5D.!!$F5 2252

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
609 625 0.238289 CCGTGCAAAACCAGCTACAG 59.762 55.000 0.00 0.0 0.00 2.74 F
1131 1288 0.320374 TCAACGATCTTCTTGGCCGT 59.680 50.000 0.00 0.0 34.74 5.68 F
1838 2373 1.467920 CTTTGGTCTGGCTTGGGATC 58.532 55.000 0.00 0.0 0.00 3.36 F
2771 3992 1.007359 GAGGGGTGGTCCTCTTCTACT 59.993 57.143 3.83 0.0 46.01 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1977 2839 0.733729 CTTGCAAGCCAGAGATGAGC 59.266 55.000 14.65 0.0 0.00 4.26 R
2202 3340 1.207089 CCACCATCACCGACATAGTGT 59.793 52.381 0.00 0.0 36.58 3.55 R
3148 4930 0.038526 ACTTCGCGGTGTTCCTACAG 60.039 55.000 6.13 0.0 34.24 2.74 R
4021 5843 0.107945 GAAGGCTGCGAGAGGAACAT 60.108 55.000 0.00 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.232905 TGGGTCCACCAGAAGAGG 57.767 61.111 0.00 0.00 46.80 3.69
21 22 1.538876 TGGGTCCACCAGAAGAGGG 60.539 63.158 0.00 0.00 46.80 4.30
22 23 1.229529 GGGTCCACCAGAAGAGGGA 60.230 63.158 0.00 0.00 39.85 4.20
23 24 1.268283 GGGTCCACCAGAAGAGGGAG 61.268 65.000 0.00 0.00 39.85 4.30
24 25 1.268283 GGTCCACCAGAAGAGGGAGG 61.268 65.000 0.00 0.00 35.64 4.30
25 26 0.252284 GTCCACCAGAAGAGGGAGGA 60.252 60.000 0.00 0.00 35.45 3.71
26 27 0.719015 TCCACCAGAAGAGGGAGGAT 59.281 55.000 0.00 0.00 33.66 3.24
27 28 1.937350 TCCACCAGAAGAGGGAGGATA 59.063 52.381 0.00 0.00 33.66 2.59
28 29 2.091055 TCCACCAGAAGAGGGAGGATAG 60.091 54.545 0.00 0.00 33.66 2.08
29 30 2.091055 CCACCAGAAGAGGGAGGATAGA 60.091 54.545 0.00 0.00 31.73 1.98
30 31 3.439260 CCACCAGAAGAGGGAGGATAGAT 60.439 52.174 0.00 0.00 31.73 1.98
31 32 3.577848 CACCAGAAGAGGGAGGATAGATG 59.422 52.174 0.00 0.00 0.00 2.90
41 42 0.796255 AGGATAGATGGGGGAGAGGG 59.204 60.000 0.00 0.00 0.00 4.30
91 92 2.202756 GATGAGGTGGACGACGGC 60.203 66.667 0.00 0.00 0.00 5.68
131 132 3.368190 CTCGCTGGAGCTGGAGTGG 62.368 68.421 0.00 0.00 39.32 4.00
157 163 0.392998 ATGGAAAATGCTCTCGCCGT 60.393 50.000 0.00 0.00 34.43 5.68
158 164 0.605319 TGGAAAATGCTCTCGCCGTT 60.605 50.000 0.00 0.00 34.43 4.44
159 165 0.521735 GGAAAATGCTCTCGCCGTTT 59.478 50.000 0.00 0.00 34.43 3.60
168 174 1.741770 CTCGCCGTTTGGGAAGAGG 60.742 63.158 0.00 0.00 38.01 3.69
189 197 1.567357 AGAAGAGACCTCCTCCTTGC 58.433 55.000 0.00 0.00 42.97 4.01
260 268 2.438614 TGACTCCCTCGCCTCTCG 60.439 66.667 0.00 0.00 40.15 4.04
266 274 4.504916 CCTCGCCTCTCGCCACTG 62.505 72.222 0.00 0.00 38.27 3.66
271 279 4.079850 CCTCTCGCCACTGCTGCT 62.080 66.667 0.00 0.00 34.43 4.24
287 295 3.093172 CTGGCCCCTCCCTCCTTC 61.093 72.222 0.00 0.00 0.00 3.46
288 296 4.760220 TGGCCCCTCCCTCCTTCC 62.760 72.222 0.00 0.00 0.00 3.46
318 326 4.726416 CAGTTTTGCAAGGTATACTGCTG 58.274 43.478 15.68 6.79 0.00 4.41
339 347 7.265673 TGCTGTTCAGATTTACTGTACTATCC 58.734 38.462 3.84 0.00 43.86 2.59
391 399 5.416271 TGTCAGAAACTGTAACCCCTATC 57.584 43.478 0.00 0.00 32.61 2.08
426 434 5.512753 TGCTGCATTTTCTGTTTCTGTTA 57.487 34.783 0.00 0.00 0.00 2.41
447 455 1.600636 CACCCATGTGTTCTGCCGT 60.601 57.895 0.00 0.00 37.72 5.68
488 496 1.602888 CCAGGCTGCTTGCTGTTCT 60.603 57.895 9.56 0.00 42.39 3.01
493 501 1.579932 CTGCTTGCTGTTCTGCCTG 59.420 57.895 0.00 0.00 0.00 4.85
585 601 4.509302 GGATTCAGGGGTTTCCTTCTTCTT 60.509 45.833 0.00 0.00 45.47 2.52
586 602 4.536295 TTCAGGGGTTTCCTTCTTCTTT 57.464 40.909 0.00 0.00 45.47 2.52
587 603 3.832527 TCAGGGGTTTCCTTCTTCTTTG 58.167 45.455 0.00 0.00 45.47 2.77
608 624 0.464735 ACCGTGCAAAACCAGCTACA 60.465 50.000 0.00 0.00 0.00 2.74
609 625 0.238289 CCGTGCAAAACCAGCTACAG 59.762 55.000 0.00 0.00 0.00 2.74
802 943 3.242011 TGATATGATGGCTGCAGGAGTA 58.758 45.455 17.12 0.00 0.00 2.59
803 944 3.842436 TGATATGATGGCTGCAGGAGTAT 59.158 43.478 17.12 0.00 0.00 2.12
804 945 2.855209 ATGATGGCTGCAGGAGTATC 57.145 50.000 17.12 0.00 0.00 2.24
805 946 1.798626 TGATGGCTGCAGGAGTATCT 58.201 50.000 17.12 0.00 33.73 1.98
806 947 2.962859 TGATGGCTGCAGGAGTATCTA 58.037 47.619 17.12 0.00 33.73 1.98
845 987 3.821033 GCCTGGTTTCTTCATACAACAGT 59.179 43.478 0.00 0.00 0.00 3.55
896 1044 8.106462 TGATTGATCTTCCACTGTTGGTATAAA 58.894 33.333 0.00 0.00 44.35 1.40
989 1143 1.710013 GATACCACAGACACACGGTG 58.290 55.000 6.58 6.58 42.63 4.94
990 1144 1.271379 GATACCACAGACACACGGTGA 59.729 52.381 16.29 0.00 45.00 4.02
991 1145 1.112950 TACCACAGACACACGGTGAA 58.887 50.000 16.29 0.00 45.00 3.18
992 1146 0.461339 ACCACAGACACACGGTGAAC 60.461 55.000 16.29 5.59 45.00 3.18
993 1147 0.461163 CCACAGACACACGGTGAACA 60.461 55.000 16.29 0.00 45.00 3.18
1017 1171 2.436646 ATGGGGAGTTCGCGCAAG 60.437 61.111 8.75 0.00 43.44 4.01
1049 1206 0.747283 CTCCTCATGTTCTGCCTGGC 60.747 60.000 12.87 12.87 0.00 4.85
1128 1285 1.267732 CGCATCAACGATCTTCTTGGC 60.268 52.381 0.00 0.00 34.06 4.52
1131 1288 0.320374 TCAACGATCTTCTTGGCCGT 59.680 50.000 0.00 0.00 34.74 5.68
1255 1412 4.990543 TCATTCTAAACAACTCACTGCG 57.009 40.909 0.00 0.00 0.00 5.18
1256 1413 3.186409 TCATTCTAAACAACTCACTGCGC 59.814 43.478 0.00 0.00 0.00 6.09
1396 1561 3.624410 TCGATGGTGAATGAGATGCAAAG 59.376 43.478 0.00 0.00 0.00 2.77
1436 1601 3.871463 GCCTTGGCATTCCGATGATCTAT 60.871 47.826 6.79 0.00 35.16 1.98
1487 1652 6.739331 AATGCCTACAGAGCTACTATCTTT 57.261 37.500 0.00 0.00 0.00 2.52
1594 1763 2.189594 TTGGATGGACAAGCTGTGAG 57.810 50.000 0.00 0.00 0.00 3.51
1598 1767 2.227388 GGATGGACAAGCTGTGAGTTTG 59.773 50.000 0.00 0.00 41.41 2.93
1603 1772 2.627945 ACAAGCTGTGAGTTTGTCGAA 58.372 42.857 0.47 0.00 44.58 3.71
1629 1798 6.843069 AAAAACACCAACTTTGATGCATAC 57.157 33.333 0.00 0.00 0.00 2.39
1631 1800 5.528043 AACACCAACTTTGATGCATACAA 57.472 34.783 0.00 3.22 0.00 2.41
1652 1821 9.970395 ATACAATGCTTTTGATGTGTATAATGG 57.030 29.630 6.92 0.00 32.00 3.16
1657 1826 9.845740 ATGCTTTTGATGTGTATAATGGTAGTA 57.154 29.630 0.00 0.00 0.00 1.82
1658 1827 9.325198 TGCTTTTGATGTGTATAATGGTAGTAG 57.675 33.333 0.00 0.00 0.00 2.57
1659 1828 8.283291 GCTTTTGATGTGTATAATGGTAGTAGC 58.717 37.037 0.00 0.00 0.00 3.58
1660 1829 9.325198 CTTTTGATGTGTATAATGGTAGTAGCA 57.675 33.333 4.19 4.19 0.00 3.49
1838 2373 1.467920 CTTTGGTCTGGCTTGGGATC 58.532 55.000 0.00 0.00 0.00 3.36
1977 2839 1.531149 GTTGTCCAGTCAATGACCACG 59.469 52.381 10.12 0.00 32.18 4.94
2054 3178 5.343715 TGTTGGTGGAAGGTAATACTCCTA 58.656 41.667 1.25 0.00 34.56 2.94
2111 3238 9.408648 TCTTCAGTGTGTCTTATATACTCATGA 57.591 33.333 0.00 0.00 0.00 3.07
2307 3445 7.290061 TCCATATGCCTGCCTATTATAATTCC 58.710 38.462 2.68 0.00 0.00 3.01
2373 3511 2.040544 CGGGGAGAAAATGCACGCT 61.041 57.895 0.00 0.00 40.13 5.07
2431 3569 3.255642 GCTCAAATTTAGGGTCAGTTGCA 59.744 43.478 0.00 0.00 0.00 4.08
2432 3570 4.261994 GCTCAAATTTAGGGTCAGTTGCAA 60.262 41.667 0.00 0.00 0.00 4.08
2433 3571 5.452078 TCAAATTTAGGGTCAGTTGCAAG 57.548 39.130 0.00 0.00 0.00 4.01
2434 3572 4.892934 TCAAATTTAGGGTCAGTTGCAAGT 59.107 37.500 0.00 0.00 0.00 3.16
2435 3573 6.065374 TCAAATTTAGGGTCAGTTGCAAGTA 58.935 36.000 6.43 0.00 0.00 2.24
2436 3574 6.719370 TCAAATTTAGGGTCAGTTGCAAGTAT 59.281 34.615 6.43 0.00 0.00 2.12
2437 3575 7.885922 TCAAATTTAGGGTCAGTTGCAAGTATA 59.114 33.333 6.43 0.00 0.00 1.47
2438 3576 8.686334 CAAATTTAGGGTCAGTTGCAAGTATAT 58.314 33.333 6.43 0.00 0.00 0.86
2439 3577 8.823220 AATTTAGGGTCAGTTGCAAGTATATT 57.177 30.769 6.43 0.00 0.00 1.28
2440 3578 9.914834 AATTTAGGGTCAGTTGCAAGTATATTA 57.085 29.630 6.43 0.00 0.00 0.98
2442 3580 9.914834 TTTAGGGTCAGTTGCAAGTATATTATT 57.085 29.630 6.43 0.00 0.00 1.40
2443 3581 9.914834 TTAGGGTCAGTTGCAAGTATATTATTT 57.085 29.630 6.43 0.00 0.00 1.40
2444 3582 8.823220 AGGGTCAGTTGCAAGTATATTATTTT 57.177 30.769 6.43 0.00 0.00 1.82
2445 3583 8.903820 AGGGTCAGTTGCAAGTATATTATTTTC 58.096 33.333 6.43 0.00 0.00 2.29
2446 3584 8.135529 GGGTCAGTTGCAAGTATATTATTTTCC 58.864 37.037 6.43 0.00 0.00 3.13
2597 3743 1.598882 TCGATCAGATCACCTCTCCG 58.401 55.000 11.12 0.00 29.16 4.63
2720 3866 3.492421 GTGGAACGCATCATTCACATT 57.508 42.857 0.00 0.00 39.55 2.71
2721 3867 3.836949 GTGGAACGCATCATTCACATTT 58.163 40.909 0.00 0.00 39.55 2.32
2722 3868 3.853671 GTGGAACGCATCATTCACATTTC 59.146 43.478 0.00 0.00 39.55 2.17
2742 3888 2.627699 TCACTCCATTTTTCTGTTGGGC 59.372 45.455 0.00 0.00 0.00 5.36
2771 3992 1.007359 GAGGGGTGGTCCTCTTCTACT 59.993 57.143 3.83 0.00 46.01 2.57
2772 3993 2.244252 GAGGGGTGGTCCTCTTCTACTA 59.756 54.545 3.83 0.00 46.01 1.82
2773 3994 2.245287 AGGGGTGGTCCTCTTCTACTAG 59.755 54.545 0.00 0.00 42.96 2.57
2885 4640 4.060900 CACACTATATGCAGGTCATGGTC 58.939 47.826 0.00 0.00 36.63 4.02
2939 4694 6.518493 TCTGACGTACCAAGTTAAGAACAAT 58.482 36.000 0.00 0.00 0.00 2.71
2999 4754 4.846940 AGGATTCTTAGGGTCAAGTTCACT 59.153 41.667 0.00 0.00 0.00 3.41
3076 4831 2.880890 GCCATGTCAGTTCTGAACAACT 59.119 45.455 21.50 0.00 37.05 3.16
3083 4838 5.879777 TGTCAGTTCTGAACAACTCAATTCA 59.120 36.000 21.50 5.72 34.17 2.57
3100 4881 8.778358 ACTCAATTCATTTCTCTCACACTTAAC 58.222 33.333 0.00 0.00 0.00 2.01
3101 4882 8.675705 TCAATTCATTTCTCTCACACTTAACA 57.324 30.769 0.00 0.00 0.00 2.41
3103 4884 8.344831 CAATTCATTTCTCTCACACTTAACACA 58.655 33.333 0.00 0.00 0.00 3.72
3109 4890 6.161855 TCTCTCACACTTAACACATCTTGT 57.838 37.500 0.00 0.00 41.74 3.16
3148 4930 1.689273 ACCGATGTATCCTCTTCTGCC 59.311 52.381 0.00 0.00 0.00 4.85
3256 5038 2.736826 CCTCTCCCGAAGAAGGCCC 61.737 68.421 0.00 0.00 32.23 5.80
3318 5100 1.843376 CCAGTGTGGAGGGTGGACT 60.843 63.158 0.00 0.00 40.96 3.85
3393 5183 6.085555 TCTCTCGTTGATACTTTGACTGTT 57.914 37.500 0.00 0.00 0.00 3.16
3395 5185 6.984474 TCTCTCGTTGATACTTTGACTGTTTT 59.016 34.615 0.00 0.00 0.00 2.43
3396 5186 7.169308 TCTCTCGTTGATACTTTGACTGTTTTC 59.831 37.037 0.00 0.00 0.00 2.29
3397 5187 6.759356 TCTCGTTGATACTTTGACTGTTTTCA 59.241 34.615 0.00 0.00 0.00 2.69
3398 5188 6.711579 TCGTTGATACTTTGACTGTTTTCAC 58.288 36.000 0.00 0.00 0.00 3.18
3433 5229 8.443160 TGTCTATTGTTCGAACAGAATTTCATC 58.557 33.333 28.21 14.84 41.49 2.92
3688 5504 1.293179 CGTGGTGGTGCTCATCTCA 59.707 57.895 0.00 0.00 0.00 3.27
4003 5825 4.418013 TGTGCACAAAATAACGAGATGG 57.582 40.909 19.28 0.00 0.00 3.51
4021 5843 0.179067 GGTAAATCATGCGTCGGGGA 60.179 55.000 0.00 0.00 0.00 4.81
4068 5914 7.698163 AATAATCTCAATCCTTGTACTCCCT 57.302 36.000 0.00 0.00 0.00 4.20
4070 5916 5.622346 ATCTCAATCCTTGTACTCCCTTC 57.378 43.478 0.00 0.00 0.00 3.46
4071 5917 4.425772 TCTCAATCCTTGTACTCCCTTCA 58.574 43.478 0.00 0.00 0.00 3.02
4074 5920 6.672218 TCTCAATCCTTGTACTCCCTTCATAA 59.328 38.462 0.00 0.00 0.00 1.90
4077 5923 6.636454 ATCCTTGTACTCCCTTCATAAACA 57.364 37.500 0.00 0.00 0.00 2.83
4081 5927 8.607713 TCCTTGTACTCCCTTCATAAACAAATA 58.392 33.333 0.00 0.00 0.00 1.40
4082 5928 9.408648 CCTTGTACTCCCTTCATAAACAAATAT 57.591 33.333 0.00 0.00 0.00 1.28
4151 5997 5.438698 TTTTTACGGAGGGAATACCATGA 57.561 39.130 0.00 0.00 43.89 3.07
4152 5998 5.640158 TTTTACGGAGGGAATACCATGAT 57.360 39.130 0.00 0.00 43.89 2.45
4153 5999 6.750660 TTTTACGGAGGGAATACCATGATA 57.249 37.500 0.00 0.00 43.89 2.15
4154 6000 6.945636 TTTACGGAGGGAATACCATGATAT 57.054 37.500 0.00 0.00 43.89 1.63
4155 6001 8.438618 TTTTACGGAGGGAATACCATGATATA 57.561 34.615 0.00 0.00 43.89 0.86
4156 6002 8.618240 TTTACGGAGGGAATACCATGATATAT 57.382 34.615 0.00 0.00 43.89 0.86
4157 6003 6.485830 ACGGAGGGAATACCATGATATATG 57.514 41.667 0.00 0.00 43.89 1.78
4158 6004 6.202331 ACGGAGGGAATACCATGATATATGA 58.798 40.000 0.00 0.00 43.89 2.15
4221 6067 2.649034 TGGCGAAGACACGAGTCC 59.351 61.111 9.50 0.00 34.89 3.85
4222 6068 2.504244 GGCGAAGACACGAGTCCG 60.504 66.667 9.50 8.17 46.15 4.79
4223 6069 2.559840 GCGAAGACACGAGTCCGA 59.440 61.111 13.81 0.00 46.15 4.55
4224 6070 1.136984 GCGAAGACACGAGTCCGAT 59.863 57.895 13.81 0.42 46.15 4.18
4225 6071 1.134530 GCGAAGACACGAGTCCGATG 61.135 60.000 13.81 2.72 46.15 3.84
4226 6072 0.446616 CGAAGACACGAGTCCGATGA 59.553 55.000 9.50 0.00 46.15 2.92
4227 6073 1.135774 CGAAGACACGAGTCCGATGAA 60.136 52.381 9.50 0.00 46.15 2.57
4228 6074 2.520979 GAAGACACGAGTCCGATGAAG 58.479 52.381 9.50 0.00 46.15 3.02
4229 6075 1.822506 AGACACGAGTCCGATGAAGA 58.177 50.000 9.50 0.00 46.15 2.87
4231 6077 0.811915 ACACGAGTCCGATGAAGAGG 59.188 55.000 0.00 0.00 39.50 3.69
4243 6099 4.223700 CCGATGAAGAGGGGATGAATGATA 59.776 45.833 0.00 0.00 0.00 2.15
4257 6113 6.938596 GGATGAATGATACATCACATGGAAGA 59.061 38.462 0.00 0.00 43.84 2.87
4274 6130 4.159135 TGGAAGAGTGGTTTATCTACCGTC 59.841 45.833 0.00 0.00 41.28 4.79
4285 6141 5.670792 TTATCTACCGTCAATCCACTGTT 57.329 39.130 0.00 0.00 0.00 3.16
4287 6143 2.894765 TCTACCGTCAATCCACTGTTCA 59.105 45.455 0.00 0.00 0.00 3.18
4290 6146 1.739466 CCGTCAATCCACTGTTCATGG 59.261 52.381 0.00 0.00 38.71 3.66
4300 6156 3.303990 CCACTGTTCATGGTCGTTTTGAG 60.304 47.826 0.00 0.00 32.08 3.02
4302 6158 3.560068 ACTGTTCATGGTCGTTTTGAGAC 59.440 43.478 0.00 0.00 37.86 3.36
4338 6194 8.999220 TTTTTGGTTGTTAAAATTTACCTCGT 57.001 26.923 8.23 0.00 0.00 4.18
4339 6195 8.999220 TTTTGGTTGTTAAAATTTACCTCGTT 57.001 26.923 8.23 0.00 0.00 3.85
4340 6196 8.999220 TTTGGTTGTTAAAATTTACCTCGTTT 57.001 26.923 8.23 0.00 0.00 3.60
4376 6232 9.906660 GTTTAAACTTGTATCATCATGGTTCAA 57.093 29.630 11.18 0.00 0.00 2.69
4415 6272 2.293399 GGGACGCACTTGTTTTGAATCT 59.707 45.455 0.00 0.00 0.00 2.40
4497 6355 5.270893 ACCCCAATGTAACACTTTGAAAC 57.729 39.130 6.52 0.00 35.88 2.78
4508 6366 9.134734 TGTAACACTTTGAAACAAGACAAATTC 57.865 29.630 0.00 0.00 35.84 2.17
4559 6417 9.709387 ATAGTAGCACCAATATTTAAAAACCCT 57.291 29.630 0.00 0.00 0.00 4.34
4560 6418 8.063200 AGTAGCACCAATATTTAAAAACCCTC 57.937 34.615 0.00 0.00 0.00 4.30
4561 6419 6.294361 AGCACCAATATTTAAAAACCCTCC 57.706 37.500 0.00 0.00 0.00 4.30
4562 6420 5.782845 AGCACCAATATTTAAAAACCCTCCA 59.217 36.000 0.00 0.00 0.00 3.86
4563 6421 6.271159 AGCACCAATATTTAAAAACCCTCCAA 59.729 34.615 0.00 0.00 0.00 3.53
4564 6422 6.370442 GCACCAATATTTAAAAACCCTCCAAC 59.630 38.462 0.00 0.00 0.00 3.77
4565 6423 6.588373 CACCAATATTTAAAAACCCTCCAACG 59.412 38.462 0.00 0.00 0.00 4.10
4566 6424 6.494146 ACCAATATTTAAAAACCCTCCAACGA 59.506 34.615 0.00 0.00 0.00 3.85
4567 6425 7.179516 ACCAATATTTAAAAACCCTCCAACGAT 59.820 33.333 0.00 0.00 0.00 3.73
4568 6426 8.688151 CCAATATTTAAAAACCCTCCAACGATA 58.312 33.333 0.00 0.00 0.00 2.92
4569 6427 9.730420 CAATATTTAAAAACCCTCCAACGATAG 57.270 33.333 0.00 0.00 46.19 2.08
4570 6428 9.689501 AATATTTAAAAACCCTCCAACGATAGA 57.310 29.630 0.00 0.00 41.38 1.98
4571 6429 9.862149 ATATTTAAAAACCCTCCAACGATAGAT 57.138 29.630 0.00 0.00 41.38 1.98
4572 6430 7.619964 TTTAAAAACCCTCCAACGATAGATC 57.380 36.000 0.00 0.00 41.38 2.75
4573 6431 3.840124 AAACCCTCCAACGATAGATCC 57.160 47.619 0.00 0.00 41.38 3.36
4574 6432 2.471815 ACCCTCCAACGATAGATCCA 57.528 50.000 0.00 0.00 41.38 3.41
4575 6433 2.977808 ACCCTCCAACGATAGATCCAT 58.022 47.619 0.00 0.00 41.38 3.41
4576 6434 2.634940 ACCCTCCAACGATAGATCCATG 59.365 50.000 0.00 0.00 41.38 3.66
4577 6435 2.613977 CCCTCCAACGATAGATCCATGC 60.614 54.545 0.00 0.00 41.38 4.06
4578 6436 2.037641 CCTCCAACGATAGATCCATGCA 59.962 50.000 0.00 0.00 41.38 3.96
4579 6437 3.062763 CTCCAACGATAGATCCATGCAC 58.937 50.000 0.00 0.00 41.38 4.57
4580 6438 1.794701 CCAACGATAGATCCATGCACG 59.205 52.381 0.00 0.00 41.38 5.34
4581 6439 2.545742 CCAACGATAGATCCATGCACGA 60.546 50.000 0.00 0.00 41.38 4.35
4582 6440 3.123050 CAACGATAGATCCATGCACGAA 58.877 45.455 0.00 0.00 41.38 3.85
4583 6441 3.452755 ACGATAGATCCATGCACGAAA 57.547 42.857 0.00 0.00 41.38 3.46
4584 6442 3.995199 ACGATAGATCCATGCACGAAAT 58.005 40.909 0.00 0.00 41.38 2.17
4585 6443 5.134202 ACGATAGATCCATGCACGAAATA 57.866 39.130 0.00 0.00 41.38 1.40
4586 6444 5.724328 ACGATAGATCCATGCACGAAATAT 58.276 37.500 0.00 0.00 41.38 1.28
4587 6445 5.807520 ACGATAGATCCATGCACGAAATATC 59.192 40.000 0.00 0.07 41.38 1.63
4588 6446 5.233050 CGATAGATCCATGCACGAAATATCC 59.767 44.000 0.00 0.00 39.76 2.59
4589 6447 3.679389 AGATCCATGCACGAAATATCCC 58.321 45.455 0.00 0.00 0.00 3.85
4590 6448 1.877637 TCCATGCACGAAATATCCCG 58.122 50.000 0.00 0.00 0.00 5.14
4591 6449 1.140052 TCCATGCACGAAATATCCCGT 59.860 47.619 0.00 0.00 39.88 5.28
4600 6458 5.130292 ACGAAATATCCCGTGTATGGTAG 57.870 43.478 0.00 0.00 37.64 3.18
4601 6459 4.828939 ACGAAATATCCCGTGTATGGTAGA 59.171 41.667 0.00 0.00 37.64 2.59
4602 6460 5.302568 ACGAAATATCCCGTGTATGGTAGAA 59.697 40.000 0.00 0.00 37.64 2.10
4603 6461 6.014840 ACGAAATATCCCGTGTATGGTAGAAT 60.015 38.462 0.00 0.00 37.64 2.40
4604 6462 6.872020 CGAAATATCCCGTGTATGGTAGAATT 59.128 38.462 0.00 0.00 0.00 2.17
4605 6463 7.148639 CGAAATATCCCGTGTATGGTAGAATTG 60.149 40.741 0.00 0.00 0.00 2.32
4606 6464 6.681729 ATATCCCGTGTATGGTAGAATTGT 57.318 37.500 0.00 0.00 0.00 2.71
4607 6465 4.829872 TCCCGTGTATGGTAGAATTGTT 57.170 40.909 0.00 0.00 0.00 2.83
4608 6466 5.168647 TCCCGTGTATGGTAGAATTGTTT 57.831 39.130 0.00 0.00 0.00 2.83
4609 6467 5.562635 TCCCGTGTATGGTAGAATTGTTTT 58.437 37.500 0.00 0.00 0.00 2.43
4610 6468 6.005198 TCCCGTGTATGGTAGAATTGTTTTT 58.995 36.000 0.00 0.00 0.00 1.94
4611 6469 6.149807 TCCCGTGTATGGTAGAATTGTTTTTC 59.850 38.462 0.00 0.00 0.00 2.29
4612 6470 6.150474 CCCGTGTATGGTAGAATTGTTTTTCT 59.850 38.462 0.00 0.00 39.28 2.52
4613 6471 7.308951 CCCGTGTATGGTAGAATTGTTTTTCTT 60.309 37.037 0.00 0.00 37.20 2.52
4614 6472 7.749126 CCGTGTATGGTAGAATTGTTTTTCTTC 59.251 37.037 0.00 0.00 37.20 2.87
4615 6473 8.504005 CGTGTATGGTAGAATTGTTTTTCTTCT 58.496 33.333 0.00 0.00 37.20 2.85
4616 6474 9.827411 GTGTATGGTAGAATTGTTTTTCTTCTC 57.173 33.333 0.00 0.00 37.20 2.87
4617 6475 9.010029 TGTATGGTAGAATTGTTTTTCTTCTCC 57.990 33.333 0.00 0.00 37.20 3.71
4618 6476 9.010029 GTATGGTAGAATTGTTTTTCTTCTCCA 57.990 33.333 0.00 0.00 37.20 3.86
4619 6477 7.272037 TGGTAGAATTGTTTTTCTTCTCCAC 57.728 36.000 0.00 0.00 37.20 4.02
4620 6478 6.831353 TGGTAGAATTGTTTTTCTTCTCCACA 59.169 34.615 0.00 0.00 37.20 4.17
4621 6479 7.505585 TGGTAGAATTGTTTTTCTTCTCCACAT 59.494 33.333 0.00 0.00 37.20 3.21
4622 6480 9.010029 GGTAGAATTGTTTTTCTTCTCCACATA 57.990 33.333 0.00 0.00 37.20 2.29
4624 6482 8.697507 AGAATTGTTTTTCTTCTCCACATAGT 57.302 30.769 0.00 0.00 31.94 2.12
4625 6483 9.136323 AGAATTGTTTTTCTTCTCCACATAGTT 57.864 29.630 0.00 0.00 31.94 2.24
4626 6484 9.399403 GAATTGTTTTTCTTCTCCACATAGTTC 57.601 33.333 0.00 0.00 0.00 3.01
4627 6485 8.697507 ATTGTTTTTCTTCTCCACATAGTTCT 57.302 30.769 0.00 0.00 0.00 3.01
4628 6486 8.519799 TTGTTTTTCTTCTCCACATAGTTCTT 57.480 30.769 0.00 0.00 0.00 2.52
4629 6487 8.519799 TGTTTTTCTTCTCCACATAGTTCTTT 57.480 30.769 0.00 0.00 0.00 2.52
4630 6488 9.621629 TGTTTTTCTTCTCCACATAGTTCTTTA 57.378 29.630 0.00 0.00 0.00 1.85
4631 6489 9.880064 GTTTTTCTTCTCCACATAGTTCTTTAC 57.120 33.333 0.00 0.00 0.00 2.01
4632 6490 9.847224 TTTTTCTTCTCCACATAGTTCTTTACT 57.153 29.630 0.00 0.00 41.04 2.24
4633 6491 8.833231 TTTCTTCTCCACATAGTTCTTTACTG 57.167 34.615 0.00 0.00 37.73 2.74
4634 6492 6.936279 TCTTCTCCACATAGTTCTTTACTGG 58.064 40.000 0.00 0.00 37.73 4.00
4635 6493 6.724441 TCTTCTCCACATAGTTCTTTACTGGA 59.276 38.462 0.00 0.00 37.73 3.86
4636 6494 6.531503 TCTCCACATAGTTCTTTACTGGAG 57.468 41.667 4.68 4.68 41.44 3.86
4637 6495 6.253758 TCTCCACATAGTTCTTTACTGGAGA 58.746 40.000 9.02 9.02 44.17 3.71
4638 6496 6.897966 TCTCCACATAGTTCTTTACTGGAGAT 59.102 38.462 9.02 0.00 42.76 2.75
4639 6497 7.400339 TCTCCACATAGTTCTTTACTGGAGATT 59.600 37.037 9.02 0.00 42.76 2.40
4640 6498 7.331026 TCCACATAGTTCTTTACTGGAGATTG 58.669 38.462 0.00 0.00 37.73 2.67
4641 6499 7.038302 TCCACATAGTTCTTTACTGGAGATTGT 60.038 37.037 0.00 0.00 37.73 2.71
4642 6500 7.607991 CCACATAGTTCTTTACTGGAGATTGTT 59.392 37.037 0.00 0.00 37.73 2.83
4643 6501 9.003658 CACATAGTTCTTTACTGGAGATTGTTT 57.996 33.333 0.00 0.00 37.73 2.83
4644 6502 9.574516 ACATAGTTCTTTACTGGAGATTGTTTT 57.425 29.630 0.00 0.00 37.73 2.43
4645 6503 9.831737 CATAGTTCTTTACTGGAGATTGTTTTG 57.168 33.333 0.00 0.00 37.73 2.44
4646 6504 6.739112 AGTTCTTTACTGGAGATTGTTTTGC 58.261 36.000 0.00 0.00 35.19 3.68
4647 6505 6.321181 AGTTCTTTACTGGAGATTGTTTTGCA 59.679 34.615 0.00 0.00 35.19 4.08
4648 6506 6.707440 TCTTTACTGGAGATTGTTTTGCAA 57.293 33.333 0.00 0.00 41.89 4.08
4655 6513 6.071952 ACTGGAGATTGTTTTGCAATAACGAT 60.072 34.615 18.92 18.92 46.90 3.73
4658 6516 5.410067 AGATTGTTTTGCAATAACGATGGG 58.590 37.500 21.69 0.00 46.90 4.00
4713 6571 9.444600 TGTCGCTTATTCTTTTAGAAATACCTT 57.555 29.630 0.00 0.00 37.82 3.50
4752 6610 5.294356 TCACAACCATTACAGTACACTGAC 58.706 41.667 16.05 0.00 46.59 3.51
4760 6618 6.313905 CCATTACAGTACACTGACTTGGATTC 59.686 42.308 16.05 0.00 46.59 2.52
4762 6620 5.489792 ACAGTACACTGACTTGGATTCAT 57.510 39.130 16.05 0.00 46.59 2.57
4765 6623 2.440409 ACACTGACTTGGATTCATGGC 58.560 47.619 0.00 0.00 0.00 4.40
4777 6635 5.218179 TGGATTCATGGCCCAAGAAATTAT 58.782 37.500 5.38 0.00 0.00 1.28
4807 6665 6.862711 AAAAGTAACTCCTGCAACTAAGAC 57.137 37.500 0.00 0.00 0.00 3.01
4839 6697 6.606796 TGAAATCTCTTAGAGACATCTGCTCT 59.393 38.462 14.73 0.00 41.76 4.09
4840 6698 6.395426 AATCTCTTAGAGACATCTGCTCTG 57.605 41.667 14.73 0.00 41.76 3.35
4849 6707 7.744087 AGAGACATCTGCTCTGTAGTAATAG 57.256 40.000 0.00 0.00 41.00 1.73
4911 6769 6.095440 AGAGATTGCAATTAAATTGTAGCGGT 59.905 34.615 14.33 0.00 42.20 5.68
4918 6776 7.496263 TGCAATTAAATTGTAGCGGTGATACTA 59.504 33.333 0.00 0.00 42.20 1.82
4925 6783 4.011698 TGTAGCGGTGATACTACAACTCA 58.988 43.478 0.00 0.00 44.27 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.679898 CCTCTTCTGGTGGACCCAC 59.320 63.158 10.61 10.61 45.49 4.61
5 6 1.268283 CCTCCCTCTTCTGGTGGACC 61.268 65.000 0.00 0.00 38.54 4.46
6 7 0.252284 TCCTCCCTCTTCTGGTGGAC 60.252 60.000 0.00 0.00 39.89 4.02
7 8 0.719015 ATCCTCCCTCTTCTGGTGGA 59.281 55.000 2.86 2.86 46.49 4.02
8 9 2.091055 TCTATCCTCCCTCTTCTGGTGG 60.091 54.545 0.00 0.00 37.78 4.61
9 10 3.320610 TCTATCCTCCCTCTTCTGGTG 57.679 52.381 0.00 0.00 0.00 4.17
10 11 3.439260 CCATCTATCCTCCCTCTTCTGGT 60.439 52.174 0.00 0.00 0.00 4.00
11 12 3.172339 CCATCTATCCTCCCTCTTCTGG 58.828 54.545 0.00 0.00 0.00 3.86
12 13 3.172339 CCCATCTATCCTCCCTCTTCTG 58.828 54.545 0.00 0.00 0.00 3.02
13 14 2.113414 CCCCATCTATCCTCCCTCTTCT 59.887 54.545 0.00 0.00 0.00 2.85
14 15 2.545810 CCCCATCTATCCTCCCTCTTC 58.454 57.143 0.00 0.00 0.00 2.87
15 16 1.153132 CCCCCATCTATCCTCCCTCTT 59.847 57.143 0.00 0.00 0.00 2.85
16 17 0.796255 CCCCCATCTATCCTCCCTCT 59.204 60.000 0.00 0.00 0.00 3.69
17 18 0.793617 TCCCCCATCTATCCTCCCTC 59.206 60.000 0.00 0.00 0.00 4.30
18 19 0.796255 CTCCCCCATCTATCCTCCCT 59.204 60.000 0.00 0.00 0.00 4.20
19 20 0.793617 TCTCCCCCATCTATCCTCCC 59.206 60.000 0.00 0.00 0.00 4.30
20 21 1.273552 CCTCTCCCCCATCTATCCTCC 60.274 61.905 0.00 0.00 0.00 4.30
21 22 1.273552 CCCTCTCCCCCATCTATCCTC 60.274 61.905 0.00 0.00 0.00 3.71
22 23 0.796255 CCCTCTCCCCCATCTATCCT 59.204 60.000 0.00 0.00 0.00 3.24
23 24 0.494095 ACCCTCTCCCCCATCTATCC 59.506 60.000 0.00 0.00 0.00 2.59
24 25 1.132689 ACACCCTCTCCCCCATCTATC 60.133 57.143 0.00 0.00 0.00 2.08
25 26 0.952659 ACACCCTCTCCCCCATCTAT 59.047 55.000 0.00 0.00 0.00 1.98
26 27 0.264955 GACACCCTCTCCCCCATCTA 59.735 60.000 0.00 0.00 0.00 1.98
27 28 1.003573 GACACCCTCTCCCCCATCT 59.996 63.158 0.00 0.00 0.00 2.90
28 29 1.306997 TGACACCCTCTCCCCCATC 60.307 63.158 0.00 0.00 0.00 3.51
29 30 1.616628 GTGACACCCTCTCCCCCAT 60.617 63.158 0.00 0.00 0.00 4.00
30 31 2.203938 GTGACACCCTCTCCCCCA 60.204 66.667 0.00 0.00 0.00 4.96
31 32 3.391382 CGTGACACCCTCTCCCCC 61.391 72.222 0.00 0.00 0.00 5.40
91 92 2.048222 TTCCGCAGCCAGTTCTCG 60.048 61.111 0.00 0.00 0.00 4.04
131 132 2.617774 GAGAGCATTTTCCATGGAGAGC 59.382 50.000 15.53 16.50 0.00 4.09
157 163 3.328050 GGTCTCTTCTTCCTCTTCCCAAA 59.672 47.826 0.00 0.00 0.00 3.28
158 164 2.907042 GGTCTCTTCTTCCTCTTCCCAA 59.093 50.000 0.00 0.00 0.00 4.12
159 165 2.112691 AGGTCTCTTCTTCCTCTTCCCA 59.887 50.000 0.00 0.00 0.00 4.37
168 174 2.093711 GCAAGGAGGAGGTCTCTTCTTC 60.094 54.545 9.44 0.00 42.10 2.87
182 188 2.643232 GCTGCAAAGGGGCAAGGAG 61.643 63.158 0.00 0.00 44.40 3.69
189 197 1.926511 CTAACAGCGCTGCAAAGGGG 61.927 60.000 36.28 15.60 0.00 4.79
244 252 3.894947 GCGAGAGGCGAGGGAGTC 61.895 72.222 0.00 0.00 44.57 3.36
271 279 4.760220 GGAAGGAGGGAGGGGCCA 62.760 72.222 4.39 0.00 38.95 5.36
285 293 1.460273 GCAAAACTGCTTCCCCGGAA 61.460 55.000 0.73 0.00 0.00 4.30
286 294 1.901464 GCAAAACTGCTTCCCCGGA 60.901 57.895 0.73 0.00 0.00 5.14
287 295 1.743321 TTGCAAAACTGCTTCCCCGG 61.743 55.000 0.00 0.00 35.49 5.73
288 296 0.318955 CTTGCAAAACTGCTTCCCCG 60.319 55.000 0.00 0.00 35.49 5.73
297 305 4.398319 ACAGCAGTATACCTTGCAAAACT 58.602 39.130 16.74 0.00 42.67 2.66
318 326 8.852135 AGCTAGGATAGTACAGTAAATCTGAAC 58.148 37.037 0.00 0.00 42.90 3.18
352 360 6.957920 TCTGACAATCTGGAAATTCAACAA 57.042 33.333 0.00 0.00 0.00 2.83
391 399 0.798159 TGCAGCATAAACAGAGCACG 59.202 50.000 0.00 0.00 0.00 5.34
447 455 2.589540 ATTCGCCGGAATCAGCCA 59.410 55.556 5.05 0.00 38.51 4.75
523 538 6.933521 CCCAATTTCATTGTCCAAAACACATA 59.066 34.615 0.00 0.00 37.70 2.29
524 539 5.764192 CCCAATTTCATTGTCCAAAACACAT 59.236 36.000 0.00 0.00 37.70 3.21
525 540 5.121811 CCCAATTTCATTGTCCAAAACACA 58.878 37.500 0.00 0.00 37.70 3.72
585 601 0.179124 GCTGGTTTTGCACGGTTCAA 60.179 50.000 0.00 0.00 0.00 2.69
586 602 1.034838 AGCTGGTTTTGCACGGTTCA 61.035 50.000 0.00 0.00 0.00 3.18
587 603 0.948678 TAGCTGGTTTTGCACGGTTC 59.051 50.000 0.00 0.00 0.00 3.62
608 624 2.760650 TGTTCTCCTGTGCACGATATCT 59.239 45.455 13.13 0.00 0.00 1.98
609 625 3.165058 TGTTCTCCTGTGCACGATATC 57.835 47.619 13.13 0.00 0.00 1.63
679 703 0.889186 CGGGTTTGGACAAGGACTGG 60.889 60.000 0.00 0.00 0.00 4.00
802 943 4.265073 GCATTGGACCAGTCAAAGTAGAT 58.735 43.478 0.00 0.00 0.00 1.98
803 944 3.559171 GGCATTGGACCAGTCAAAGTAGA 60.559 47.826 0.00 0.00 0.00 2.59
804 945 2.749621 GGCATTGGACCAGTCAAAGTAG 59.250 50.000 0.00 0.00 0.00 2.57
805 946 2.375174 AGGCATTGGACCAGTCAAAGTA 59.625 45.455 0.00 0.00 0.00 2.24
806 947 1.145738 AGGCATTGGACCAGTCAAAGT 59.854 47.619 0.00 0.00 0.00 2.66
896 1044 5.537300 AGTGAAGTAGTGAACACTCATGT 57.463 39.130 10.81 0.00 42.54 3.21
989 1143 3.339141 GAACTCCCCATCTTGTCTGTTC 58.661 50.000 0.00 0.00 0.00 3.18
990 1144 2.289694 CGAACTCCCCATCTTGTCTGTT 60.290 50.000 0.00 0.00 0.00 3.16
991 1145 1.276421 CGAACTCCCCATCTTGTCTGT 59.724 52.381 0.00 0.00 0.00 3.41
992 1146 2.009042 GCGAACTCCCCATCTTGTCTG 61.009 57.143 0.00 0.00 0.00 3.51
993 1147 0.250513 GCGAACTCCCCATCTTGTCT 59.749 55.000 0.00 0.00 0.00 3.41
1017 1171 3.960102 ACATGAGGAGAAGAGAGGTGATC 59.040 47.826 0.00 0.00 0.00 2.92
1122 1279 0.824109 CCAGAGTCATACGGCCAAGA 59.176 55.000 2.24 0.00 0.00 3.02
1128 1285 0.174845 TTTCGGCCAGAGTCATACGG 59.825 55.000 2.24 0.00 0.00 4.02
1131 1288 3.490933 CGATCTTTTCGGCCAGAGTCATA 60.491 47.826 2.24 0.00 44.28 2.15
1255 1412 0.322816 TCTGAAGCCCTTCACCATGC 60.323 55.000 6.62 0.00 43.90 4.06
1256 1413 1.004044 ACTCTGAAGCCCTTCACCATG 59.996 52.381 6.62 0.00 43.90 3.66
1319 1484 3.252284 CTGCCCCCACCACTCAGT 61.252 66.667 0.00 0.00 0.00 3.41
1362 1527 2.117156 CCATCGAAGCCCAAGCCTG 61.117 63.158 0.00 0.00 41.25 4.85
1436 1601 2.934887 CCATGGACAGCATCAATACCA 58.065 47.619 5.56 0.00 0.00 3.25
1610 1779 5.472148 CATTGTATGCATCAAAGTTGGTGT 58.528 37.500 0.19 0.00 41.32 4.16
1629 1798 9.454585 CTACCATTATACACATCAAAAGCATTG 57.545 33.333 0.00 0.00 0.00 2.82
1631 1800 8.752005 ACTACCATTATACACATCAAAAGCAT 57.248 30.769 0.00 0.00 0.00 3.79
1670 1839 9.906660 CTGAAAGGCAAAAATACACATAAGTAA 57.093 29.630 0.00 0.00 0.00 2.24
1693 2223 0.982852 CACCAGCATAGGGTCCCTGA 60.983 60.000 21.83 5.12 36.19 3.86
1838 2373 6.910536 AAGGATAACTAGAAGACATTTGCG 57.089 37.500 0.00 0.00 0.00 4.85
1977 2839 0.733729 CTTGCAAGCCAGAGATGAGC 59.266 55.000 14.65 0.00 0.00 4.26
2004 2866 3.209410 CCTTCCTGTGTAATCTGATGGC 58.791 50.000 0.00 0.00 0.00 4.40
2202 3340 1.207089 CCACCATCACCGACATAGTGT 59.793 52.381 0.00 0.00 36.58 3.55
2373 3511 9.753674 AGAAAATCAGTGATAAGGAAATGGTTA 57.246 29.630 5.94 0.00 0.00 2.85
2440 3578 8.924511 TCTTCTGTCTTTGTGATAAGGAAAAT 57.075 30.769 0.00 0.00 0.00 1.82
2441 3579 8.924511 ATCTTCTGTCTTTGTGATAAGGAAAA 57.075 30.769 0.00 0.00 0.00 2.29
2442 3580 8.786898 CAATCTTCTGTCTTTGTGATAAGGAAA 58.213 33.333 0.00 0.00 0.00 3.13
2443 3581 7.391554 CCAATCTTCTGTCTTTGTGATAAGGAA 59.608 37.037 0.00 0.00 0.00 3.36
2444 3582 6.881065 CCAATCTTCTGTCTTTGTGATAAGGA 59.119 38.462 0.00 0.00 0.00 3.36
2445 3583 6.656693 ACCAATCTTCTGTCTTTGTGATAAGG 59.343 38.462 0.00 0.00 0.00 2.69
2446 3584 7.605691 AGACCAATCTTCTGTCTTTGTGATAAG 59.394 37.037 0.00 0.00 35.93 1.73
2597 3743 5.526111 TGAATAAGAATAGTTTACGCCTGGC 59.474 40.000 9.11 9.11 0.00 4.85
2716 3862 6.282930 CCAACAGAAAAATGGAGTGAAATGT 58.717 36.000 0.00 0.00 36.27 2.71
2717 3863 5.697633 CCCAACAGAAAAATGGAGTGAAATG 59.302 40.000 0.00 0.00 36.27 2.32
2718 3864 5.742838 GCCCAACAGAAAAATGGAGTGAAAT 60.743 40.000 0.00 0.00 36.27 2.17
2719 3865 4.442753 GCCCAACAGAAAAATGGAGTGAAA 60.443 41.667 0.00 0.00 36.27 2.69
2720 3866 3.069443 GCCCAACAGAAAAATGGAGTGAA 59.931 43.478 0.00 0.00 36.27 3.18
2721 3867 2.627699 GCCCAACAGAAAAATGGAGTGA 59.372 45.455 0.00 0.00 36.27 3.41
2722 3868 2.629617 AGCCCAACAGAAAAATGGAGTG 59.370 45.455 0.00 0.00 36.27 3.51
2742 3888 1.486726 GGACCACCCCTCTATTGTGAG 59.513 57.143 0.00 0.00 31.66 3.51
2771 3992 8.491045 TCACCAAGGATGTATCATAATCACTA 57.509 34.615 0.00 0.00 0.00 2.74
2772 3993 7.379059 TCACCAAGGATGTATCATAATCACT 57.621 36.000 0.00 0.00 0.00 3.41
2773 3994 8.627208 AATCACCAAGGATGTATCATAATCAC 57.373 34.615 0.00 0.00 0.00 3.06
2885 4640 3.826157 TGAATTCTGTGTAGGCAAAAGGG 59.174 43.478 7.05 0.00 0.00 3.95
2939 4694 6.623767 CGTCGATTCTGCTCATGAGGATAATA 60.624 42.308 22.25 9.76 0.00 0.98
2947 4702 2.735823 CATCGTCGATTCTGCTCATGA 58.264 47.619 4.63 0.00 0.00 3.07
2999 4754 5.333566 AAGGGTTCTCAAAAAGACCCATA 57.666 39.130 12.52 0.00 42.94 2.74
3076 4831 8.559536 GTGTTAAGTGTGAGAGAAATGAATTGA 58.440 33.333 0.00 0.00 0.00 2.57
3083 4838 7.716998 ACAAGATGTGTTAAGTGTGAGAGAAAT 59.283 33.333 0.00 0.00 37.01 2.17
3122 4903 6.586844 GCAGAAGAGGATACATCGGTAAATAC 59.413 42.308 0.00 0.00 41.41 1.89
3148 4930 0.038526 ACTTCGCGGTGTTCCTACAG 60.039 55.000 6.13 0.00 34.24 2.74
3256 5038 4.610844 GGCGACGAGGATCTTACG 57.389 61.111 0.00 0.00 0.00 3.18
3318 5100 2.627515 GCTCTCCTTGCCATGTGATA 57.372 50.000 0.00 0.00 0.00 2.15
3393 5183 4.881273 ACAATAGACAACACTGCTGTGAAA 59.119 37.500 27.99 8.37 46.55 2.69
3395 5185 4.071961 ACAATAGACAACACTGCTGTGA 57.928 40.909 27.99 6.85 46.55 3.58
3397 5187 3.494626 CGAACAATAGACAACACTGCTGT 59.505 43.478 0.00 0.00 0.00 4.40
3398 5188 3.740832 TCGAACAATAGACAACACTGCTG 59.259 43.478 0.00 0.00 0.00 4.41
3404 5194 7.490962 AATTCTGTTCGAACAATAGACAACA 57.509 32.000 29.32 10.66 38.66 3.33
3407 5200 7.722795 TGAAATTCTGTTCGAACAATAGACA 57.277 32.000 29.32 20.85 38.66 3.41
3433 5229 1.063006 CGTGCCTGCATTCCATTCG 59.937 57.895 0.00 0.00 0.00 3.34
3874 5690 1.004679 GGGAAACAGCGGGTCGTAA 60.005 57.895 0.00 0.00 0.00 3.18
4003 5825 1.531149 CATCCCCGACGCATGATTTAC 59.469 52.381 0.00 0.00 0.00 2.01
4021 5843 0.107945 GAAGGCTGCGAGAGGAACAT 60.108 55.000 0.00 0.00 0.00 2.71
4129 5975 5.438698 TCATGGTATTCCCTCCGTAAAAA 57.561 39.130 0.00 0.00 0.00 1.94
4130 5976 5.640158 ATCATGGTATTCCCTCCGTAAAA 57.360 39.130 0.00 0.00 0.00 1.52
4131 5977 6.945636 ATATCATGGTATTCCCTCCGTAAA 57.054 37.500 0.00 0.00 0.00 2.01
4132 5978 7.842236 TCATATATCATGGTATTCCCTCCGTAA 59.158 37.037 3.26 0.00 0.00 3.18
4133 5979 7.359056 TCATATATCATGGTATTCCCTCCGTA 58.641 38.462 3.26 0.00 0.00 4.02
4134 5980 6.202331 TCATATATCATGGTATTCCCTCCGT 58.798 40.000 3.26 0.00 0.00 4.69
4135 5981 6.731292 TCATATATCATGGTATTCCCTCCG 57.269 41.667 3.26 0.00 0.00 4.63
4155 6001 7.826252 CGAGGGGTCATTATCATCTTTATTCAT 59.174 37.037 0.00 0.00 0.00 2.57
4156 6002 7.016170 TCGAGGGGTCATTATCATCTTTATTCA 59.984 37.037 0.00 0.00 0.00 2.57
4157 6003 7.386851 TCGAGGGGTCATTATCATCTTTATTC 58.613 38.462 0.00 0.00 0.00 1.75
4158 6004 7.316393 TCGAGGGGTCATTATCATCTTTATT 57.684 36.000 0.00 0.00 0.00 1.40
4167 6013 3.244215 TGCTGATTCGAGGGGTCATTATC 60.244 47.826 0.00 0.00 0.00 1.75
4168 6014 2.705658 TGCTGATTCGAGGGGTCATTAT 59.294 45.455 0.00 0.00 0.00 1.28
4216 6062 1.342819 CATCCCCTCTTCATCGGACTC 59.657 57.143 0.00 0.00 0.00 3.36
4217 6063 1.062886 TCATCCCCTCTTCATCGGACT 60.063 52.381 0.00 0.00 0.00 3.85
4220 6066 2.369860 TCATTCATCCCCTCTTCATCGG 59.630 50.000 0.00 0.00 0.00 4.18
4221 6067 3.758755 TCATTCATCCCCTCTTCATCG 57.241 47.619 0.00 0.00 0.00 3.84
4222 6068 6.119240 TGTATCATTCATCCCCTCTTCATC 57.881 41.667 0.00 0.00 0.00 2.92
4223 6069 6.273965 TGATGTATCATTCATCCCCTCTTCAT 59.726 38.462 2.07 0.00 40.38 2.57
4224 6070 5.608015 TGATGTATCATTCATCCCCTCTTCA 59.392 40.000 2.07 0.00 40.38 3.02
4225 6071 5.936956 GTGATGTATCATTCATCCCCTCTTC 59.063 44.000 2.07 0.00 40.38 2.87
4226 6072 5.370584 TGTGATGTATCATTCATCCCCTCTT 59.629 40.000 2.07 0.00 40.38 2.85
4227 6073 4.909695 TGTGATGTATCATTCATCCCCTCT 59.090 41.667 2.07 0.00 40.38 3.69
4228 6074 5.233083 TGTGATGTATCATTCATCCCCTC 57.767 43.478 2.07 0.00 40.38 4.30
4229 6075 5.516062 CCATGTGATGTATCATTCATCCCCT 60.516 44.000 2.07 0.00 40.38 4.79
4231 6077 5.563592 TCCATGTGATGTATCATTCATCCC 58.436 41.667 2.07 0.00 40.38 3.85
4243 6099 3.795688 AACCACTCTTCCATGTGATGT 57.204 42.857 0.00 0.00 36.38 3.06
4257 6113 4.468510 TGGATTGACGGTAGATAAACCACT 59.531 41.667 0.00 0.00 39.71 4.00
4274 6130 2.426522 ACGACCATGAACAGTGGATTG 58.573 47.619 0.00 0.00 39.12 2.67
4285 6141 3.744238 TGAGTCTCAAAACGACCATGA 57.256 42.857 0.00 0.00 31.83 3.07
4287 6143 2.744202 GCATGAGTCTCAAAACGACCAT 59.256 45.455 6.64 0.00 31.83 3.55
4290 6146 4.238514 AGTAGCATGAGTCTCAAAACGAC 58.761 43.478 6.64 6.04 0.00 4.34
4345 6201 9.912634 CCATGATGATACAAGTTTAAACAAGTT 57.087 29.630 20.06 3.46 0.00 2.66
4346 6202 9.077885 ACCATGATGATACAAGTTTAAACAAGT 57.922 29.630 20.06 18.03 0.00 3.16
4347 6203 9.912634 AACCATGATGATACAAGTTTAAACAAG 57.087 29.630 20.06 13.55 0.00 3.16
4348 6204 9.906660 GAACCATGATGATACAAGTTTAAACAA 57.093 29.630 20.06 3.48 0.00 2.83
4349 6205 9.072375 TGAACCATGATGATACAAGTTTAAACA 57.928 29.630 20.06 0.00 0.00 2.83
4366 6222 7.767250 TTTGTTGGTACATATTGAACCATGA 57.233 32.000 0.00 0.00 42.65 3.07
4398 6255 3.354089 ACCAGATTCAAAACAAGTGCG 57.646 42.857 0.00 0.00 0.00 5.34
4400 6257 4.869297 TGCAAACCAGATTCAAAACAAGTG 59.131 37.500 0.00 0.00 0.00 3.16
4401 6258 5.083533 TGCAAACCAGATTCAAAACAAGT 57.916 34.783 0.00 0.00 0.00 3.16
4415 6272 7.257003 GTGTATCATCATGTATTTGCAAACCA 58.743 34.615 15.41 14.48 0.00 3.67
4463 6321 2.162681 CATTGGGGTTTTCTTCGCTCT 58.837 47.619 0.00 0.00 0.00 4.09
4469 6327 6.155393 TCAAAGTGTTACATTGGGGTTTTCTT 59.845 34.615 0.00 0.00 28.76 2.52
4550 6408 5.190132 TGGATCTATCGTTGGAGGGTTTTTA 59.810 40.000 0.00 0.00 0.00 1.52
4554 6412 2.759355 TGGATCTATCGTTGGAGGGTT 58.241 47.619 0.00 0.00 0.00 4.11
4556 6414 2.613977 GCATGGATCTATCGTTGGAGGG 60.614 54.545 0.00 0.00 0.00 4.30
4559 6417 2.545742 CGTGCATGGATCTATCGTTGGA 60.546 50.000 0.00 0.00 0.00 3.53
4560 6418 1.794701 CGTGCATGGATCTATCGTTGG 59.205 52.381 0.00 0.00 0.00 3.77
4561 6419 2.742774 TCGTGCATGGATCTATCGTTG 58.257 47.619 5.98 0.00 0.00 4.10
4562 6420 3.452755 TTCGTGCATGGATCTATCGTT 57.547 42.857 5.98 0.00 0.00 3.85
4563 6421 3.452755 TTTCGTGCATGGATCTATCGT 57.547 42.857 5.98 0.00 0.00 3.73
4564 6422 5.233050 GGATATTTCGTGCATGGATCTATCG 59.767 44.000 5.98 0.00 0.00 2.92
4565 6423 5.525378 GGGATATTTCGTGCATGGATCTATC 59.475 44.000 5.98 7.31 0.00 2.08
4566 6424 5.431765 GGGATATTTCGTGCATGGATCTAT 58.568 41.667 5.98 0.00 0.00 1.98
4567 6425 4.620567 CGGGATATTTCGTGCATGGATCTA 60.621 45.833 5.98 0.00 0.00 1.98
4568 6426 3.679389 GGGATATTTCGTGCATGGATCT 58.321 45.455 5.98 0.00 0.00 2.75
4569 6427 2.416547 CGGGATATTTCGTGCATGGATC 59.583 50.000 5.98 4.57 0.00 3.36
4570 6428 2.224523 ACGGGATATTTCGTGCATGGAT 60.225 45.455 5.98 3.67 38.25 3.41
4571 6429 1.140052 ACGGGATATTTCGTGCATGGA 59.860 47.619 5.98 0.00 38.25 3.41
4572 6430 1.593196 ACGGGATATTTCGTGCATGG 58.407 50.000 5.98 0.00 38.25 3.66
4578 6436 4.828939 TCTACCATACACGGGATATTTCGT 59.171 41.667 0.00 0.00 40.49 3.85
4579 6437 5.381174 TCTACCATACACGGGATATTTCG 57.619 43.478 0.00 0.00 0.00 3.46
4580 6438 7.660208 ACAATTCTACCATACACGGGATATTTC 59.340 37.037 0.00 0.00 0.00 2.17
4581 6439 7.514721 ACAATTCTACCATACACGGGATATTT 58.485 34.615 0.00 0.00 0.00 1.40
4582 6440 7.074653 ACAATTCTACCATACACGGGATATT 57.925 36.000 0.00 0.00 0.00 1.28
4583 6441 6.681729 ACAATTCTACCATACACGGGATAT 57.318 37.500 0.00 0.00 0.00 1.63
4584 6442 6.488769 AACAATTCTACCATACACGGGATA 57.511 37.500 0.00 0.00 0.00 2.59
4585 6443 5.367945 AACAATTCTACCATACACGGGAT 57.632 39.130 0.00 0.00 0.00 3.85
4586 6444 4.829872 AACAATTCTACCATACACGGGA 57.170 40.909 0.00 0.00 0.00 5.14
4587 6445 5.890424 AAAACAATTCTACCATACACGGG 57.110 39.130 0.00 0.00 0.00 5.28
4588 6446 7.141100 AGAAAAACAATTCTACCATACACGG 57.859 36.000 0.00 0.00 37.88 4.94
4589 6447 8.504005 AGAAGAAAAACAATTCTACCATACACG 58.496 33.333 0.00 0.00 38.69 4.49
4590 6448 9.827411 GAGAAGAAAAACAATTCTACCATACAC 57.173 33.333 0.00 0.00 38.69 2.90
4591 6449 9.010029 GGAGAAGAAAAACAATTCTACCATACA 57.990 33.333 0.00 0.00 38.69 2.29
4592 6450 9.010029 TGGAGAAGAAAAACAATTCTACCATAC 57.990 33.333 0.00 0.00 38.69 2.39
4593 6451 9.010029 GTGGAGAAGAAAAACAATTCTACCATA 57.990 33.333 10.99 0.00 38.69 2.74
4594 6452 7.505585 TGTGGAGAAGAAAAACAATTCTACCAT 59.494 33.333 10.99 0.00 38.69 3.55
4595 6453 6.831353 TGTGGAGAAGAAAAACAATTCTACCA 59.169 34.615 0.00 0.00 38.69 3.25
4596 6454 7.272037 TGTGGAGAAGAAAAACAATTCTACC 57.728 36.000 0.00 0.00 38.69 3.18
4598 6456 9.793259 ACTATGTGGAGAAGAAAAACAATTCTA 57.207 29.630 0.00 0.00 38.69 2.10
4599 6457 8.697507 ACTATGTGGAGAAGAAAAACAATTCT 57.302 30.769 0.00 0.00 41.34 2.40
4600 6458 9.399403 GAACTATGTGGAGAAGAAAAACAATTC 57.601 33.333 0.00 0.00 0.00 2.17
4601 6459 9.136323 AGAACTATGTGGAGAAGAAAAACAATT 57.864 29.630 0.00 0.00 0.00 2.32
4602 6460 8.697507 AGAACTATGTGGAGAAGAAAAACAAT 57.302 30.769 0.00 0.00 0.00 2.71
4603 6461 8.519799 AAGAACTATGTGGAGAAGAAAAACAA 57.480 30.769 0.00 0.00 0.00 2.83
4604 6462 8.519799 AAAGAACTATGTGGAGAAGAAAAACA 57.480 30.769 0.00 0.00 0.00 2.83
4605 6463 9.880064 GTAAAGAACTATGTGGAGAAGAAAAAC 57.120 33.333 0.00 0.00 0.00 2.43
4606 6464 9.847224 AGTAAAGAACTATGTGGAGAAGAAAAA 57.153 29.630 0.00 0.00 36.36 1.94
4607 6465 9.273016 CAGTAAAGAACTATGTGGAGAAGAAAA 57.727 33.333 0.00 0.00 35.76 2.29
4608 6466 7.878127 CCAGTAAAGAACTATGTGGAGAAGAAA 59.122 37.037 0.00 0.00 35.76 2.52
4609 6467 7.234782 TCCAGTAAAGAACTATGTGGAGAAGAA 59.765 37.037 0.00 0.00 35.76 2.52
4610 6468 6.724441 TCCAGTAAAGAACTATGTGGAGAAGA 59.276 38.462 0.00 0.00 35.76 2.87
4611 6469 6.936279 TCCAGTAAAGAACTATGTGGAGAAG 58.064 40.000 0.00 0.00 35.76 2.85
4612 6470 6.724441 TCTCCAGTAAAGAACTATGTGGAGAA 59.276 38.462 14.33 0.92 44.61 2.87
4613 6471 6.253758 TCTCCAGTAAAGAACTATGTGGAGA 58.746 40.000 12.99 12.99 45.03 3.71
4614 6472 6.531503 TCTCCAGTAAAGAACTATGTGGAG 57.468 41.667 8.85 8.85 42.28 3.86
4615 6473 7.038302 ACAATCTCCAGTAAAGAACTATGTGGA 60.038 37.037 0.00 0.00 35.76 4.02
4616 6474 7.106239 ACAATCTCCAGTAAAGAACTATGTGG 58.894 38.462 0.00 0.00 35.76 4.17
4617 6475 8.553459 AACAATCTCCAGTAAAGAACTATGTG 57.447 34.615 0.00 0.00 35.76 3.21
4618 6476 9.574516 AAAACAATCTCCAGTAAAGAACTATGT 57.425 29.630 0.00 0.00 35.76 2.29
4619 6477 9.831737 CAAAACAATCTCCAGTAAAGAACTATG 57.168 33.333 0.00 0.00 35.76 2.23
4620 6478 8.515414 GCAAAACAATCTCCAGTAAAGAACTAT 58.485 33.333 0.00 0.00 35.76 2.12
4621 6479 7.500892 TGCAAAACAATCTCCAGTAAAGAACTA 59.499 33.333 0.00 0.00 35.76 2.24
4622 6480 6.321181 TGCAAAACAATCTCCAGTAAAGAACT 59.679 34.615 0.00 0.00 39.81 3.01
4623 6481 6.503524 TGCAAAACAATCTCCAGTAAAGAAC 58.496 36.000 0.00 0.00 0.00 3.01
4624 6482 6.707440 TGCAAAACAATCTCCAGTAAAGAA 57.293 33.333 0.00 0.00 0.00 2.52
4625 6483 6.707440 TTGCAAAACAATCTCCAGTAAAGA 57.293 33.333 0.00 0.00 31.73 2.52
4626 6484 8.915654 GTTATTGCAAAACAATCTCCAGTAAAG 58.084 33.333 1.71 0.00 46.28 1.85
4627 6485 7.593273 CGTTATTGCAAAACAATCTCCAGTAAA 59.407 33.333 1.71 0.00 46.28 2.01
4628 6486 7.041030 TCGTTATTGCAAAACAATCTCCAGTAA 60.041 33.333 1.71 0.00 46.28 2.24
4629 6487 6.428465 TCGTTATTGCAAAACAATCTCCAGTA 59.572 34.615 1.71 0.00 46.28 2.74
4630 6488 5.240623 TCGTTATTGCAAAACAATCTCCAGT 59.759 36.000 1.71 0.00 46.28 4.00
4631 6489 5.698832 TCGTTATTGCAAAACAATCTCCAG 58.301 37.500 1.71 0.00 46.28 3.86
4632 6490 5.697473 TCGTTATTGCAAAACAATCTCCA 57.303 34.783 1.71 0.00 46.28 3.86
4633 6491 5.516339 CCATCGTTATTGCAAAACAATCTCC 59.484 40.000 1.71 0.00 46.28 3.71
4634 6492 5.516339 CCCATCGTTATTGCAAAACAATCTC 59.484 40.000 1.71 0.00 46.28 2.75
4635 6493 5.047377 ACCCATCGTTATTGCAAAACAATCT 60.047 36.000 1.71 0.00 46.28 2.40
4636 6494 5.062058 CACCCATCGTTATTGCAAAACAATC 59.938 40.000 1.71 0.00 46.28 2.67
4638 6496 4.302455 CACCCATCGTTATTGCAAAACAA 58.698 39.130 1.71 0.00 44.01 2.83
4639 6497 3.858877 GCACCCATCGTTATTGCAAAACA 60.859 43.478 1.71 2.01 33.24 2.83
4640 6498 2.666022 GCACCCATCGTTATTGCAAAAC 59.334 45.455 1.71 8.66 33.24 2.43
4641 6499 2.297315 TGCACCCATCGTTATTGCAAAA 59.703 40.909 1.71 0.00 40.15 2.44
4642 6500 1.889170 TGCACCCATCGTTATTGCAAA 59.111 42.857 1.71 0.00 40.15 3.68
4643 6501 1.539157 TGCACCCATCGTTATTGCAA 58.461 45.000 0.00 0.00 40.15 4.08
4644 6502 1.761449 ATGCACCCATCGTTATTGCA 58.239 45.000 0.00 0.00 46.59 4.08
4645 6503 2.350772 GCTATGCACCCATCGTTATTGC 60.351 50.000 0.00 0.00 32.85 3.56
4646 6504 2.877786 TGCTATGCACCCATCGTTATTG 59.122 45.455 0.00 0.00 31.71 1.90
4647 6505 3.207265 TGCTATGCACCCATCGTTATT 57.793 42.857 0.00 0.00 31.71 1.40
4648 6506 2.928801 TGCTATGCACCCATCGTTAT 57.071 45.000 0.00 0.00 31.71 1.89
4649 6507 2.158827 ACATGCTATGCACCCATCGTTA 60.159 45.455 0.00 0.00 43.04 3.18
4655 6513 2.114051 CGCACATGCTATGCACCCA 61.114 57.895 7.47 0.00 43.04 4.51
4658 6516 1.063006 CACCGCACATGCTATGCAC 59.937 57.895 7.47 0.00 43.04 4.57
4731 6589 5.546621 AGTCAGTGTACTGTAATGGTTGT 57.453 39.130 11.44 0.00 44.12 3.32
4743 6601 3.375299 GCCATGAATCCAAGTCAGTGTAC 59.625 47.826 0.00 0.00 0.00 2.90
4834 6692 9.239551 TCTTACAAAGACTATTACTACAGAGCA 57.760 33.333 0.00 0.00 31.20 4.26
4889 6747 6.033341 TCACCGCTACAATTTAATTGCAATC 58.967 36.000 13.38 4.23 43.98 2.67
4905 6763 5.828747 GAATGAGTTGTAGTATCACCGCTA 58.171 41.667 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.