Multiple sequence alignment - TraesCS5B01G392600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G392600 chr5B 100.000 6409 0 0 1 6409 571236695 571230287 0.000000e+00 11836.0
1 TraesCS5B01G392600 chr5B 93.068 2611 140 19 1576 4162 57700351 57702944 0.000000e+00 3781.0
2 TraesCS5B01G392600 chr5B 90.766 1971 123 34 4272 6222 57702938 57704869 0.000000e+00 2577.0
3 TraesCS5B01G392600 chr5B 86.135 577 37 16 917 1471 57699800 57700355 3.330000e-162 582.0
4 TraesCS5B01G392600 chr5B 88.727 275 18 11 136 399 132321685 132321413 2.230000e-84 324.0
5 TraesCS5B01G392600 chr5B 87.823 271 21 8 139 399 43922946 43922678 2.240000e-79 307.0
6 TraesCS5B01G392600 chr5B 99.265 136 1 0 1 136 30680472 30680337 4.960000e-61 246.0
7 TraesCS5B01G392600 chr5B 95.082 122 6 0 4156 4277 70795650 70795771 6.560000e-45 193.0
8 TraesCS5B01G392600 chr5B 96.552 87 1 2 6128 6214 571190405 571190321 6.700000e-30 143.0
9 TraesCS5B01G392600 chr5B 97.059 68 2 0 5082 5149 571231547 571231614 1.460000e-21 115.0
10 TraesCS5B01G392600 chr5D 92.142 2685 146 33 1532 4162 464133261 464130588 0.000000e+00 3729.0
11 TraesCS5B01G392600 chr5D 90.224 849 58 18 4272 5117 464130594 464129768 0.000000e+00 1085.0
12 TraesCS5B01G392600 chr5D 88.095 714 54 18 5116 5805 464129703 464128997 0.000000e+00 819.0
13 TraesCS5B01G392600 chr5D 87.246 690 37 20 728 1399 464134039 464133383 0.000000e+00 739.0
14 TraesCS5B01G392600 chr5D 90.488 410 28 9 5869 6270 464128822 464128416 1.220000e-146 531.0
15 TraesCS5B01G392600 chr5D 90.164 305 22 4 426 729 464135135 464134838 2.170000e-104 390.0
16 TraesCS5B01G392600 chr5D 87.179 273 23 8 138 400 432455453 432455183 3.760000e-77 300.0
17 TraesCS5B01G392600 chr5D 95.763 118 5 0 4160 4277 420228284 420228167 2.360000e-44 191.0
18 TraesCS5B01G392600 chr5D 100.000 75 0 0 6136 6210 480597103 480597029 8.660000e-29 139.0
19 TraesCS5B01G392600 chr5D 97.436 78 2 0 6135 6212 412599223 412599300 4.030000e-27 134.0
20 TraesCS5B01G392600 chr5D 94.737 76 3 1 5798 5872 464128958 464128883 4.060000e-22 117.0
21 TraesCS5B01G392600 chr5D 91.667 84 6 1 6130 6213 464127361 464127279 1.460000e-21 115.0
22 TraesCS5B01G392600 chr5A 93.850 2374 127 13 1795 4162 43538888 43541248 0.000000e+00 3557.0
23 TraesCS5B01G392600 chr5A 93.423 2372 129 15 1805 4162 584617636 584615278 0.000000e+00 3491.0
24 TraesCS5B01G392600 chr5A 93.255 2372 133 15 1805 4162 584577081 584574723 0.000000e+00 3469.0
25 TraesCS5B01G392600 chr5A 93.626 1616 78 10 4272 5872 43541242 43542847 0.000000e+00 2390.0
26 TraesCS5B01G392600 chr5A 86.212 1436 95 42 409 1792 584619063 584617679 0.000000e+00 1459.0
27 TraesCS5B01G392600 chr5A 90.064 785 56 16 4272 5049 584615284 584614515 0.000000e+00 998.0
28 TraesCS5B01G392600 chr5A 87.752 596 54 9 5176 5755 584614515 584613923 0.000000e+00 678.0
29 TraesCS5B01G392600 chr5A 84.497 587 38 21 917 1471 43535829 43536394 1.220000e-146 531.0
30 TraesCS5B01G392600 chr5A 83.121 628 58 31 736 1327 43533269 43533884 4.400000e-146 529.0
31 TraesCS5B01G392600 chr5A 82.222 585 52 31 781 1327 43532184 43532754 2.110000e-124 457.0
32 TraesCS5B01G392600 chr5A 92.857 308 19 2 397 704 43534107 43534411 1.640000e-120 444.0
33 TraesCS5B01G392600 chr5A 91.234 308 22 4 397 704 43532970 43533272 1.290000e-111 414.0
34 TraesCS5B01G392600 chr5A 80.000 350 35 19 5869 6213 584613786 584613467 6.470000e-55 226.0
35 TraesCS5B01G392600 chr5A 82.156 269 27 11 5957 6223 43543643 43543892 1.810000e-50 211.0
36 TraesCS5B01G392600 chr5A 92.157 102 4 4 6122 6222 584520914 584520816 2.410000e-29 141.0
37 TraesCS5B01G392600 chr5A 97.500 80 2 0 5793 5872 584613926 584613847 3.120000e-28 137.0
38 TraesCS5B01G392600 chr5A 89.720 107 8 1 736 842 43534408 43534511 4.030000e-27 134.0
39 TraesCS5B01G392600 chr5A 100.000 29 0 0 1764 1792 43538839 43538867 3.000000e-03 54.7
40 TraesCS5B01G392600 chrUn 95.533 403 17 1 2390 2792 478497178 478496777 1.510000e-180 643.0
41 TraesCS5B01G392600 chr2D 89.493 276 19 6 138 404 593721895 593721621 2.210000e-89 340.0
42 TraesCS5B01G392600 chr2D 88.519 270 19 6 138 397 536987096 536987363 3.730000e-82 316.0
43 TraesCS5B01G392600 chr2D 84.133 271 32 8 138 400 48364865 48364598 1.070000e-62 252.0
44 TraesCS5B01G392600 chr2D 91.358 81 3 2 5081 5157 170613543 170613463 2.440000e-19 108.0
45 TraesCS5B01G392600 chr1D 85.714 273 28 7 138 400 226830353 226830082 1.760000e-70 278.0
46 TraesCS5B01G392600 chr1D 99.265 136 1 0 1 136 55024457 55024322 4.960000e-61 246.0
47 TraesCS5B01G392600 chr1D 98.529 136 2 0 1 136 245987911 245988046 2.310000e-59 241.0
48 TraesCS5B01G392600 chr1D 92.233 103 4 4 6136 6237 443743084 443742985 6.700000e-30 143.0
49 TraesCS5B01G392600 chr1D 92.593 81 5 1 6143 6223 443542976 443543055 1.460000e-21 115.0
50 TraesCS5B01G392600 chr1D 93.151 73 0 2 5082 5149 469542959 469543031 1.140000e-17 102.0
51 TraesCS5B01G392600 chr1B 85.145 276 28 9 136 400 470426234 470425961 2.940000e-68 270.0
52 TraesCS5B01G392600 chr1B 80.000 225 35 7 185 400 503343605 503343382 2.390000e-34 158.0
53 TraesCS5B01G392600 chr1B 100.000 77 0 0 6136 6212 603214271 603214195 6.700000e-30 143.0
54 TraesCS5B01G392600 chr7A 84.758 269 28 8 138 399 539429410 539429672 2.290000e-64 257.0
55 TraesCS5B01G392600 chr6B 99.265 136 1 0 1 136 229710979 229710844 4.960000e-61 246.0
56 TraesCS5B01G392600 chr6B 93.846 130 8 0 4160 4289 32822535 32822664 5.070000e-46 196.0
57 TraesCS5B01G392600 chr6B 93.701 127 8 0 4151 4277 267021764 267021890 2.360000e-44 191.0
58 TraesCS5B01G392600 chr6B 93.333 75 2 2 5081 5152 541936725 541936651 2.440000e-19 108.0
59 TraesCS5B01G392600 chr6B 92.105 76 2 2 5082 5153 460086801 460086876 3.160000e-18 104.0
60 TraesCS5B01G392600 chr2B 99.265 136 1 0 1 136 91494940 91495075 4.960000e-61 246.0
61 TraesCS5B01G392600 chr2B 94.355 124 7 0 4154 4277 497854150 497854273 2.360000e-44 191.0
62 TraesCS5B01G392600 chr2B 94.915 118 6 0 4160 4277 113275158 113275275 1.100000e-42 185.0
63 TraesCS5B01G392600 chr2B 88.372 86 6 3 5081 5162 31599913 31599828 4.090000e-17 100.0
64 TraesCS5B01G392600 chr6D 98.529 136 2 0 1 136 310007669 310007534 2.310000e-59 241.0
65 TraesCS5B01G392600 chr6D 98.529 136 2 0 1 136 389334948 389334813 2.310000e-59 241.0
66 TraesCS5B01G392600 chr6D 98.529 136 2 0 1 136 467364190 467364325 2.310000e-59 241.0
67 TraesCS5B01G392600 chr6D 93.600 125 6 2 4153 4277 430998458 430998580 1.100000e-42 185.0
68 TraesCS5B01G392600 chr6D 91.139 79 6 1 6136 6213 94688073 94687995 8.790000e-19 106.0
69 TraesCS5B01G392600 chr4D 98.529 136 2 0 1 136 450521557 450521692 2.310000e-59 241.0
70 TraesCS5B01G392600 chr4D 94.400 125 7 0 4161 4285 234179142 234179266 6.560000e-45 193.0
71 TraesCS5B01G392600 chr4D 100.000 72 0 0 6138 6209 82235794 82235723 4.030000e-27 134.0
72 TraesCS5B01G392600 chr4A 84.848 231 25 5 183 404 226035803 226036032 2.330000e-54 224.0
73 TraesCS5B01G392600 chr7D 81.139 281 35 12 132 397 441850415 441850692 6.510000e-50 209.0
74 TraesCS5B01G392600 chr7D 98.765 81 1 0 6130 6210 553851074 553851154 1.860000e-30 145.0
75 TraesCS5B01G392600 chr3B 95.868 121 5 0 4161 4281 796433081 796433201 5.070000e-46 196.0
76 TraesCS5B01G392600 chr3B 91.429 105 2 5 6113 6210 190474383 190474279 3.120000e-28 137.0
77 TraesCS5B01G392600 chr4B 80.693 202 29 7 206 402 31869178 31869374 1.440000e-31 148.0
78 TraesCS5B01G392600 chr4B 100.000 70 0 0 6140 6209 71807578 71807509 5.210000e-26 130.0
79 TraesCS5B01G392600 chr4B 98.571 70 1 0 6140 6209 71855413 71855344 2.430000e-24 124.0
80 TraesCS5B01G392600 chr4B 95.000 80 2 1 6132 6209 116057975 116058054 2.430000e-24 124.0
81 TraesCS5B01G392600 chr3A 100.000 77 0 0 6134 6210 147796916 147796840 6.700000e-30 143.0
82 TraesCS5B01G392600 chr1A 100.000 77 0 0 6136 6212 539687059 539686983 6.700000e-30 143.0
83 TraesCS5B01G392600 chr7B 98.734 79 0 1 6136 6214 600826971 600826894 8.660000e-29 139.0
84 TraesCS5B01G392600 chr7B 98.734 79 0 1 6137 6215 600834263 600834186 8.660000e-29 139.0
85 TraesCS5B01G392600 chr3D 95.402 87 1 3 6126 6209 134094224 134094138 1.120000e-27 135.0
86 TraesCS5B01G392600 chr3D 98.667 75 1 0 6136 6210 134093996 134093922 4.030000e-27 134.0
87 TraesCS5B01G392600 chr6A 90.541 74 6 1 6137 6209 114287375 114287448 5.290000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G392600 chr5B 571230287 571236695 6408 True 11836.000000 11836 100.000000 1 6409 1 chr5B.!!$R5 6408
1 TraesCS5B01G392600 chr5B 57699800 57704869 5069 False 2313.333333 3781 89.989667 917 6222 3 chr5B.!!$F3 5305
2 TraesCS5B01G392600 chr5D 464127279 464135135 7856 True 940.625000 3729 90.595375 426 6270 8 chr5D.!!$R4 5844
3 TraesCS5B01G392600 chr5A 584574723 584577081 2358 True 3469.000000 3469 93.255000 1805 4162 1 chr5A.!!$R2 2357
4 TraesCS5B01G392600 chr5A 584613467 584619063 5596 True 1164.833333 3491 89.158500 409 6213 6 chr5A.!!$R3 5804
5 TraesCS5B01G392600 chr5A 43532184 43543892 11708 False 872.170000 3557 89.328300 397 6223 10 chr5A.!!$F1 5826

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
755 1958 0.092857 GCCGCGTTATTTGCAAAAGC 59.907 50.000 17.19 17.00 0.00 3.51 F
894 3248 0.179197 CATCAAAGCAGCACGCAGAG 60.179 55.000 0.00 0.00 46.13 3.35 F
1837 7829 0.320374 TGAACTCCTGGTGCTTACCG 59.680 55.000 0.00 0.00 0.00 4.02 F
1838 7830 0.606604 GAACTCCTGGTGCTTACCGA 59.393 55.000 0.00 0.00 0.00 4.69 F
2110 8114 0.826062 CCTTCCACATGCAATTCCCC 59.174 55.000 0.00 0.00 0.00 4.81 F
2585 8589 1.135746 GCTGAATGACAAGTGCTCTGC 60.136 52.381 0.00 0.00 0.00 4.26 F
4184 10197 0.030369 CCTCCGTCCGGAAATACTCG 59.970 60.000 5.23 3.90 44.66 4.18 F
4273 10286 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1866 7864 0.169672 GTGCGACGCCTGTTACTAGA 59.830 55.000 18.69 0.0 0.00 2.43 R
1867 7865 0.170561 AGTGCGACGCCTGTTACTAG 59.829 55.000 18.69 0.0 0.00 2.57 R
2768 8772 4.600062 AGACTGGTTCCAACTTCTTTGTT 58.400 39.130 0.00 0.0 32.71 2.83 R
3252 9263 4.787551 TGGTCACCAGAAAATTGTACTGT 58.212 39.130 0.00 0.0 0.00 3.55 R
4026 10039 4.087892 CCACCCGAGCCACCAGAG 62.088 72.222 0.00 0.0 0.00 3.35 R
4254 10267 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 R
5072 11097 0.033405 TGGAGGGAGTAGGAACCGAG 60.033 60.000 0.00 0.0 0.00 4.63 R
5932 12160 0.179070 GGGGAGGAATTCGTCTGCTC 60.179 60.000 23.36 12.6 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.089920 GCAAGCATCCTCATCGTTGT 58.910 50.000 0.00 0.00 0.00 3.32
22 23 0.532573 AGCATCCTCATCGTTGTCGT 59.467 50.000 0.00 0.00 38.33 4.34
23 24 0.647410 GCATCCTCATCGTTGTCGTG 59.353 55.000 0.00 0.00 38.33 4.35
24 25 0.647410 CATCCTCATCGTTGTCGTGC 59.353 55.000 0.00 0.00 38.33 5.34
25 26 0.246360 ATCCTCATCGTTGTCGTGCA 59.754 50.000 0.00 0.00 38.33 4.57
26 27 0.246360 TCCTCATCGTTGTCGTGCAT 59.754 50.000 0.00 0.00 38.33 3.96
27 28 1.078709 CCTCATCGTTGTCGTGCATT 58.921 50.000 0.00 0.00 38.33 3.56
28 29 1.464608 CCTCATCGTTGTCGTGCATTT 59.535 47.619 0.00 0.00 38.33 2.32
29 30 2.474526 CCTCATCGTTGTCGTGCATTTC 60.475 50.000 0.00 0.00 38.33 2.17
30 31 2.412870 TCATCGTTGTCGTGCATTTCT 58.587 42.857 0.00 0.00 38.33 2.52
33 34 0.865111 CGTTGTCGTGCATTTCTGGA 59.135 50.000 0.00 0.00 0.00 3.86
34 35 1.464608 CGTTGTCGTGCATTTCTGGAT 59.535 47.619 0.00 0.00 0.00 3.41
35 36 2.474526 CGTTGTCGTGCATTTCTGGATC 60.475 50.000 0.00 0.00 0.00 3.36
36 37 1.358877 TGTCGTGCATTTCTGGATCG 58.641 50.000 0.00 0.00 0.00 3.69
38 39 1.590238 GTCGTGCATTTCTGGATCGAG 59.410 52.381 0.00 0.00 31.20 4.04
39 40 0.933097 CGTGCATTTCTGGATCGAGG 59.067 55.000 4.78 0.00 0.00 4.63
40 41 1.740380 CGTGCATTTCTGGATCGAGGT 60.740 52.381 4.78 0.00 0.00 3.85
42 43 1.554617 TGCATTTCTGGATCGAGGTGA 59.445 47.619 4.78 0.00 0.00 4.02
43 44 2.027285 TGCATTTCTGGATCGAGGTGAA 60.027 45.455 4.78 0.00 0.00 3.18
44 45 3.209410 GCATTTCTGGATCGAGGTGAAT 58.791 45.455 4.78 1.37 0.00 2.57
45 46 3.249559 GCATTTCTGGATCGAGGTGAATC 59.750 47.826 4.78 0.00 0.00 2.52
46 47 3.543680 TTTCTGGATCGAGGTGAATCC 57.456 47.619 4.78 0.00 0.00 3.01
47 48 2.159179 TCTGGATCGAGGTGAATCCA 57.841 50.000 4.78 3.31 40.56 3.41
48 49 2.466846 TCTGGATCGAGGTGAATCCAA 58.533 47.619 4.78 0.00 42.03 3.53
49 50 2.432146 TCTGGATCGAGGTGAATCCAAG 59.568 50.000 4.78 0.68 42.03 3.61
50 51 2.169352 CTGGATCGAGGTGAATCCAAGT 59.831 50.000 4.82 0.00 42.03 3.16
51 52 2.571653 TGGATCGAGGTGAATCCAAGTT 59.428 45.455 0.65 0.00 39.95 2.66
52 53 3.009033 TGGATCGAGGTGAATCCAAGTTT 59.991 43.478 0.65 0.00 39.95 2.66
53 54 3.375299 GGATCGAGGTGAATCCAAGTTTG 59.625 47.826 0.00 0.00 39.02 2.93
56 57 1.200020 GAGGTGAATCCAAGTTTGCCG 59.800 52.381 0.00 0.00 39.02 5.69
57 58 0.243636 GGTGAATCCAAGTTTGCCGG 59.756 55.000 0.00 0.00 35.97 6.13
58 59 0.958822 GTGAATCCAAGTTTGCCGGT 59.041 50.000 1.90 0.00 0.00 5.28
60 61 0.388520 GAATCCAAGTTTGCCGGTGC 60.389 55.000 1.90 0.00 38.26 5.01
69 70 2.676608 TGCCGGTGCAATCCATCT 59.323 55.556 1.90 0.00 46.66 2.90
70 71 1.001020 TGCCGGTGCAATCCATCTT 60.001 52.632 1.90 0.00 46.66 2.40
71 72 1.314534 TGCCGGTGCAATCCATCTTG 61.315 55.000 1.90 0.00 46.66 3.02
84 85 6.860080 CAATCCATCTTGCATTTGAAGTAGT 58.140 36.000 0.00 0.00 0.00 2.73
85 86 7.318141 CAATCCATCTTGCATTTGAAGTAGTT 58.682 34.615 0.00 0.00 0.00 2.24
87 88 5.769662 TCCATCTTGCATTTGAAGTAGTTGT 59.230 36.000 0.00 0.00 0.00 3.32
88 89 6.072508 TCCATCTTGCATTTGAAGTAGTTGTC 60.073 38.462 0.00 0.00 0.00 3.18
89 90 5.342806 TCTTGCATTTGAAGTAGTTGTCG 57.657 39.130 0.00 0.00 0.00 4.35
91 92 5.525745 TCTTGCATTTGAAGTAGTTGTCGAA 59.474 36.000 0.00 0.00 0.00 3.71
92 93 5.090652 TGCATTTGAAGTAGTTGTCGAAC 57.909 39.130 0.00 0.00 0.00 3.95
93 94 4.814234 TGCATTTGAAGTAGTTGTCGAACT 59.186 37.500 0.00 0.00 44.90 3.01
94 95 5.050363 TGCATTTGAAGTAGTTGTCGAACTC 60.050 40.000 0.00 0.00 41.75 3.01
95 96 5.614887 GCATTTGAAGTAGTTGTCGAACTCC 60.615 44.000 0.00 0.00 41.75 3.85
97 98 2.030540 TGAAGTAGTTGTCGAACTCCCG 60.031 50.000 0.00 0.00 41.75 5.14
99 100 0.883833 GTAGTTGTCGAACTCCCGGA 59.116 55.000 0.73 0.00 41.75 5.14
100 101 1.475682 GTAGTTGTCGAACTCCCGGAT 59.524 52.381 0.73 0.00 41.75 4.18
101 102 0.246635 AGTTGTCGAACTCCCGGATG 59.753 55.000 0.73 0.00 38.01 3.51
103 104 0.901114 TTGTCGAACTCCCGGATGGA 60.901 55.000 0.73 0.00 42.41 3.41
105 106 0.464452 GTCGAACTCCCGGATGGAAT 59.536 55.000 0.73 0.00 44.57 3.01
106 107 1.134491 GTCGAACTCCCGGATGGAATT 60.134 52.381 0.73 0.00 44.57 2.17
107 108 1.138266 TCGAACTCCCGGATGGAATTC 59.862 52.381 0.73 0.00 44.25 2.17
109 110 2.289565 GAACTCCCGGATGGAATTCAC 58.710 52.381 0.73 0.00 46.42 3.18
110 111 1.285280 ACTCCCGGATGGAATTCACA 58.715 50.000 0.73 3.48 44.57 3.58
112 113 2.242196 ACTCCCGGATGGAATTCACAAT 59.758 45.455 0.73 0.00 44.57 2.71
113 114 2.880890 CTCCCGGATGGAATTCACAATC 59.119 50.000 0.73 7.07 44.57 2.67
115 116 2.423373 CCCGGATGGAATTCACAATCCT 60.423 50.000 22.02 1.78 37.49 3.24
119 120 3.887716 GGATGGAATTCACAATCCTGAGG 59.112 47.826 19.40 0.00 36.64 3.86
121 122 4.656100 TGGAATTCACAATCCTGAGGAA 57.344 40.909 4.76 0.00 34.34 3.36
125 126 5.397142 AATTCACAATCCTGAGGAAAAGC 57.603 39.130 4.76 0.00 34.34 3.51
126 127 3.795688 TCACAATCCTGAGGAAAAGCT 57.204 42.857 4.76 0.00 34.34 3.74
127 128 4.104383 TCACAATCCTGAGGAAAAGCTT 57.896 40.909 4.76 0.00 34.34 3.74
128 129 4.473444 TCACAATCCTGAGGAAAAGCTTT 58.527 39.130 4.76 5.69 34.34 3.51
130 131 4.522022 CACAATCCTGAGGAAAAGCTTTCT 59.478 41.667 13.10 6.11 34.34 2.52
131 132 4.522022 ACAATCCTGAGGAAAAGCTTTCTG 59.478 41.667 13.10 4.05 34.34 3.02
132 133 2.508526 TCCTGAGGAAAAGCTTTCTGC 58.491 47.619 13.10 8.29 43.29 4.26
134 135 5.107118 ATCCTGAGGAAAAGCTTTCTGCTC 61.107 45.833 23.27 23.27 43.29 4.26
135 136 7.506395 ATCCTGAGGAAAAGCTTTCTGCTCA 62.506 44.000 27.10 27.10 43.29 4.26
141 142 2.046892 GCTTTCTGCTCAGGGCGA 60.047 61.111 0.00 0.00 45.43 5.54
142 143 2.394563 GCTTTCTGCTCAGGGCGAC 61.395 63.158 0.00 0.00 45.43 5.19
173 174 3.775654 GGTGGGAGGCTGGTCGAG 61.776 72.222 0.00 0.00 0.00 4.04
174 175 3.775654 GTGGGAGGCTGGTCGAGG 61.776 72.222 0.00 0.00 0.00 4.63
175 176 3.992641 TGGGAGGCTGGTCGAGGA 61.993 66.667 0.00 0.00 0.00 3.71
176 177 2.683933 GGGAGGCTGGTCGAGGAA 60.684 66.667 0.00 0.00 0.00 3.36
177 178 2.726351 GGGAGGCTGGTCGAGGAAG 61.726 68.421 0.00 0.00 0.00 3.46
178 179 1.682684 GGAGGCTGGTCGAGGAAGA 60.683 63.158 0.00 0.00 0.00 2.87
179 180 1.258445 GGAGGCTGGTCGAGGAAGAA 61.258 60.000 0.00 0.00 0.00 2.52
180 181 0.608640 GAGGCTGGTCGAGGAAGAAA 59.391 55.000 0.00 0.00 0.00 2.52
181 182 1.002087 GAGGCTGGTCGAGGAAGAAAA 59.998 52.381 0.00 0.00 0.00 2.29
182 183 1.420138 AGGCTGGTCGAGGAAGAAAAA 59.580 47.619 0.00 0.00 0.00 1.94
183 184 2.040412 AGGCTGGTCGAGGAAGAAAAAT 59.960 45.455 0.00 0.00 0.00 1.82
184 185 2.420372 GGCTGGTCGAGGAAGAAAAATC 59.580 50.000 0.00 0.00 0.00 2.17
186 187 3.753797 GCTGGTCGAGGAAGAAAAATCTT 59.246 43.478 0.00 0.00 0.00 2.40
187 188 4.378874 GCTGGTCGAGGAAGAAAAATCTTG 60.379 45.833 0.00 0.00 0.00 3.02
190 191 4.998033 GGTCGAGGAAGAAAAATCTTGACT 59.002 41.667 0.00 0.00 39.41 3.41
191 192 5.470437 GGTCGAGGAAGAAAAATCTTGACTT 59.530 40.000 0.00 0.00 39.41 3.01
192 193 6.017026 GGTCGAGGAAGAAAAATCTTGACTTT 60.017 38.462 0.00 0.00 39.41 2.66
193 194 7.418408 GTCGAGGAAGAAAAATCTTGACTTTT 58.582 34.615 0.00 0.00 37.55 2.27
194 195 7.588123 GTCGAGGAAGAAAAATCTTGACTTTTC 59.412 37.037 8.64 8.64 37.55 2.29
195 196 7.282224 TCGAGGAAGAAAAATCTTGACTTTTCA 59.718 33.333 16.16 0.00 36.25 2.69
196 197 7.377131 CGAGGAAGAAAAATCTTGACTTTTCAC 59.623 37.037 16.16 10.78 36.25 3.18
197 198 7.492524 AGGAAGAAAAATCTTGACTTTTCACC 58.507 34.615 16.16 16.59 36.25 4.02
198 199 7.343057 AGGAAGAAAAATCTTGACTTTTCACCT 59.657 33.333 19.27 19.27 37.48 4.00
203 204 9.196552 GAAAAATCTTGACTTTTCACCTAATGG 57.803 33.333 11.00 0.00 34.54 3.16
204 205 5.904362 ATCTTGACTTTTCACCTAATGGC 57.096 39.130 0.00 0.00 36.63 4.40
205 206 3.751175 TCTTGACTTTTCACCTAATGGCG 59.249 43.478 0.00 0.00 36.63 5.69
207 208 2.811431 TGACTTTTCACCTAATGGCGTG 59.189 45.455 0.00 0.00 36.63 5.34
209 210 1.472480 CTTTTCACCTAATGGCGTGGG 59.528 52.381 0.00 0.00 36.63 4.61
210 211 0.402504 TTTCACCTAATGGCGTGGGT 59.597 50.000 0.00 0.00 36.63 4.51
212 213 1.195442 TCACCTAATGGCGTGGGTCA 61.195 55.000 2.18 0.00 36.63 4.02
213 214 0.744414 CACCTAATGGCGTGGGTCAG 60.744 60.000 2.18 0.00 36.63 3.51
214 215 1.819632 CCTAATGGCGTGGGTCAGC 60.820 63.158 0.00 0.00 0.00 4.26
223 224 4.947147 TGGGTCAGCCGCGCTTTT 62.947 61.111 5.56 0.00 36.40 2.27
224 225 4.103103 GGGTCAGCCGCGCTTTTC 62.103 66.667 5.56 0.00 36.40 2.29
227 228 4.329545 TCAGCCGCGCTTTTCCCT 62.330 61.111 5.56 0.00 36.40 4.20
229 230 3.365265 AGCCGCGCTTTTCCCTTG 61.365 61.111 5.56 0.00 33.89 3.61
235 236 2.561373 GCTTTTCCCTTGCGTCGG 59.439 61.111 0.00 0.00 0.00 4.79
236 237 1.964373 GCTTTTCCCTTGCGTCGGA 60.964 57.895 0.00 0.00 0.00 4.55
238 239 1.912371 CTTTTCCCTTGCGTCGGAGC 61.912 60.000 0.00 0.00 37.71 4.70
239 240 3.894547 TTTCCCTTGCGTCGGAGCC 62.895 63.158 0.00 0.00 36.02 4.70
247 248 4.760047 CGTCGGAGCCCCCAAGTG 62.760 72.222 0.00 0.00 34.14 3.16
312 313 2.046314 CCAAACCGGCATCGTCCT 60.046 61.111 0.00 0.00 33.95 3.85
313 314 2.398554 CCAAACCGGCATCGTCCTG 61.399 63.158 0.00 0.00 33.95 3.86
315 316 3.622060 AAACCGGCATCGTCCTGGG 62.622 63.158 0.00 0.00 33.95 4.45
359 360 3.097114 CGGCGCCGAAAAAGTTGC 61.097 61.111 44.86 1.62 42.83 4.17
360 361 2.733218 GGCGCCGAAAAAGTTGCC 60.733 61.111 12.58 0.00 35.04 4.52
361 362 2.335011 GCGCCGAAAAAGTTGCCT 59.665 55.556 0.00 0.00 0.00 4.75
362 363 2.016165 GCGCCGAAAAAGTTGCCTG 61.016 57.895 0.00 0.00 0.00 4.85
363 364 1.371635 CGCCGAAAAAGTTGCCTGG 60.372 57.895 0.00 0.00 0.00 4.45
364 365 1.006220 GCCGAAAAAGTTGCCTGGG 60.006 57.895 0.00 0.00 0.00 4.45
366 367 1.665442 CGAAAAAGTTGCCTGGGGG 59.335 57.895 0.00 0.00 0.00 5.40
397 398 2.188994 GCGGCTGGAGATGCTCTT 59.811 61.111 0.00 0.00 0.00 2.85
398 399 1.443407 GCGGCTGGAGATGCTCTTA 59.557 57.895 0.00 0.00 0.00 2.10
400 401 0.599728 CGGCTGGAGATGCTCTTAGC 60.600 60.000 12.47 12.47 42.82 3.09
401 402 0.758123 GGCTGGAGATGCTCTTAGCT 59.242 55.000 17.10 0.00 42.97 3.32
402 403 1.140652 GGCTGGAGATGCTCTTAGCTT 59.859 52.381 17.10 0.00 42.97 3.74
403 404 2.482864 GCTGGAGATGCTCTTAGCTTC 58.517 52.381 0.00 6.68 42.97 3.86
404 405 2.158986 GCTGGAGATGCTCTTAGCTTCA 60.159 50.000 14.79 0.00 44.87 3.02
424 815 0.417437 TCCCCCAATCTGTCCTCTCA 59.583 55.000 0.00 0.00 0.00 3.27
461 852 2.611800 TGCTGCCACCTCCCTCAT 60.612 61.111 0.00 0.00 0.00 2.90
462 853 2.191641 GCTGCCACCTCCCTCATC 59.808 66.667 0.00 0.00 0.00 2.92
463 854 2.914289 CTGCCACCTCCCTCATCC 59.086 66.667 0.00 0.00 0.00 3.51
464 855 1.692042 CTGCCACCTCCCTCATCCT 60.692 63.158 0.00 0.00 0.00 3.24
465 856 1.690633 TGCCACCTCCCTCATCCTC 60.691 63.158 0.00 0.00 0.00 3.71
466 857 2.447714 GCCACCTCCCTCATCCTCC 61.448 68.421 0.00 0.00 0.00 4.30
467 858 1.768077 CCACCTCCCTCATCCTCCC 60.768 68.421 0.00 0.00 0.00 4.30
468 859 1.768077 CACCTCCCTCATCCTCCCC 60.768 68.421 0.00 0.00 0.00 4.81
469 860 2.122189 CCTCCCTCATCCTCCCCC 60.122 72.222 0.00 0.00 0.00 5.40
470 861 2.525381 CTCCCTCATCCTCCCCCG 60.525 72.222 0.00 0.00 0.00 5.73
588 990 2.958578 AAGCACCAACGACACCCAGG 62.959 60.000 0.00 0.00 0.00 4.45
651 1053 0.471971 GCCCTAGTAGATCAGCCCCA 60.472 60.000 0.00 0.00 0.00 4.96
739 1942 2.028190 CTCCTGCAGGATACGCCG 59.972 66.667 35.11 18.84 44.46 6.46
754 1957 0.361847 CGCCGCGTTATTTGCAAAAG 59.638 50.000 17.19 9.19 0.00 2.27
755 1958 0.092857 GCCGCGTTATTTGCAAAAGC 59.907 50.000 17.19 17.00 0.00 3.51
770 1984 3.165071 CAAAAGCCCCCTTGACTATTGT 58.835 45.455 0.00 0.00 0.00 2.71
772 1986 2.514458 AGCCCCCTTGACTATTGTTG 57.486 50.000 0.00 0.00 0.00 3.33
780 3134 5.414454 CCCCTTGACTATTGTTGATTTCGAA 59.586 40.000 0.00 0.00 0.00 3.71
791 3145 8.918961 ATTGTTGATTTCGAAACAAAACTGTA 57.081 26.923 13.81 8.18 46.22 2.74
800 3154 6.432107 TCGAAACAAAACTGTACAAATAGGC 58.568 36.000 0.00 0.00 0.00 3.93
805 3159 5.151389 CAAAACTGTACAAATAGGCGGAAC 58.849 41.667 0.00 0.00 0.00 3.62
806 3160 3.688694 ACTGTACAAATAGGCGGAACA 57.311 42.857 0.00 0.00 0.00 3.18
811 3165 3.149005 ACAAATAGGCGGAACAAGGAA 57.851 42.857 0.00 0.00 0.00 3.36
827 3181 1.303643 GAAGGCCCACCAGTGAAGG 60.304 63.158 0.00 0.00 39.06 3.46
851 3205 2.978824 CCACGGGGATATAGGCCG 59.021 66.667 0.00 0.00 35.59 6.13
852 3206 2.264794 CACGGGGATATAGGCCGC 59.735 66.667 0.00 0.00 35.22 6.53
855 3209 2.893398 GGGGATATAGGCCGCGAG 59.107 66.667 8.23 0.00 0.00 5.03
856 3210 2.184579 GGGATATAGGCCGCGAGC 59.815 66.667 8.23 9.71 42.60 5.03
874 3228 4.821589 CCGCGACCAAGCTCCCTC 62.822 72.222 8.23 0.00 34.40 4.30
875 3229 4.821589 CGCGACCAAGCTCCCTCC 62.822 72.222 0.00 0.00 34.40 4.30
878 3232 1.144936 CGACCAAGCTCCCTCCATC 59.855 63.158 0.00 0.00 0.00 3.51
894 3248 0.179197 CATCAAAGCAGCACGCAGAG 60.179 55.000 0.00 0.00 46.13 3.35
910 3264 0.613292 AGAGGCCGAGAAGAAGAGCA 60.613 55.000 0.00 0.00 0.00 4.26
911 3265 0.459411 GAGGCCGAGAAGAAGAGCAC 60.459 60.000 0.00 0.00 0.00 4.40
912 3266 1.807573 GGCCGAGAAGAAGAGCACG 60.808 63.158 0.00 0.00 0.00 5.34
913 3267 1.807573 GCCGAGAAGAAGAGCACGG 60.808 63.158 0.00 0.00 42.63 4.94
914 3268 1.883732 CCGAGAAGAAGAGCACGGA 59.116 57.895 0.00 0.00 42.40 4.69
915 3269 0.457851 CCGAGAAGAAGAGCACGGAT 59.542 55.000 0.00 0.00 42.40 4.18
933 4532 2.094894 GGATTGACATTGACGACTGCTG 59.905 50.000 0.00 0.00 0.00 4.41
987 4592 3.526841 AGAAGAAATCCTCCTCCAAGCAT 59.473 43.478 0.00 0.00 0.00 3.79
990 4608 0.471617 AATCCTCCTCCAAGCATCCG 59.528 55.000 0.00 0.00 0.00 4.18
991 4609 0.692419 ATCCTCCTCCAAGCATCCGT 60.692 55.000 0.00 0.00 0.00 4.69
992 4610 1.144936 CCTCCTCCAAGCATCCGTC 59.855 63.158 0.00 0.00 0.00 4.79
1262 4905 4.057428 GCAGAGGACGCGGTCTGT 62.057 66.667 26.26 13.87 41.99 3.41
1302 4949 4.759516 TTTTTAGCTTTCGGATGGTGAC 57.240 40.909 0.00 0.00 0.00 3.67
1305 4952 3.081133 CTTTCGGATGGTGACGCG 58.919 61.111 3.53 3.53 0.00 6.01
1306 4953 1.736645 CTTTCGGATGGTGACGCGT 60.737 57.895 13.85 13.85 0.00 6.01
1361 5010 4.934797 AGAAAGGATGAGGAATGGTGAA 57.065 40.909 0.00 0.00 0.00 3.18
1447 5129 5.333566 TTCCAGTTAAAATCCCTTCCAGT 57.666 39.130 0.00 0.00 0.00 4.00
1460 5142 3.728385 CTTCCAGTCTGAAGGGGATTT 57.272 47.619 0.00 0.00 38.45 2.17
1472 5154 6.329197 TCTGAAGGGGATTTAGTCGGATTATT 59.671 38.462 0.00 0.00 0.00 1.40
1479 5161 5.107065 GGATTTAGTCGGATTATTCAAGGCG 60.107 44.000 0.00 0.00 0.00 5.52
1482 5164 3.714391 AGTCGGATTATTCAAGGCGTAC 58.286 45.455 0.00 0.00 0.00 3.67
1505 5187 5.180680 ACAAACAAGCCCGTATTCTTTACTC 59.819 40.000 0.00 0.00 0.00 2.59
1506 5188 4.820894 ACAAGCCCGTATTCTTTACTCT 57.179 40.909 0.00 0.00 0.00 3.24
1507 5189 4.756502 ACAAGCCCGTATTCTTTACTCTC 58.243 43.478 0.00 0.00 0.00 3.20
1731 5429 4.264253 TGCTCGATGAGATCATTGGTTTT 58.736 39.130 9.65 0.00 38.11 2.43
1743 5441 3.069443 TCATTGGTTTTTCCCAGCTTGTC 59.931 43.478 0.00 0.00 35.49 3.18
1792 7754 6.656270 ACATCACTTCTTCATAATCAACAGCA 59.344 34.615 0.00 0.00 0.00 4.41
1836 7828 1.610886 GGTGAACTCCTGGTGCTTACC 60.611 57.143 0.00 0.00 0.00 2.85
1837 7829 0.320374 TGAACTCCTGGTGCTTACCG 59.680 55.000 0.00 0.00 0.00 4.02
1838 7830 0.606604 GAACTCCTGGTGCTTACCGA 59.393 55.000 0.00 0.00 0.00 4.69
1880 7878 2.093106 CCTGAGTCTAGTAACAGGCGT 58.907 52.381 14.78 0.00 42.30 5.68
1918 7919 7.130303 ACTTAATCTGTCCTTTAACGAAAGC 57.870 36.000 0.00 0.00 40.76 3.51
2073 8077 7.820648 ACTTCGTAAATTCATCTTTCTTGCAT 58.179 30.769 0.00 0.00 0.00 3.96
2110 8114 0.826062 CCTTCCACATGCAATTCCCC 59.174 55.000 0.00 0.00 0.00 4.81
2499 8503 1.348036 GCTTCACCTGACCACTACCTT 59.652 52.381 0.00 0.00 0.00 3.50
2506 8510 3.181454 ACCTGACCACTACCTTGTCAAAG 60.181 47.826 0.00 0.00 38.45 2.77
2522 8526 7.174946 CCTTGTCAAAGTTGTCACCATATAAGT 59.825 37.037 0.00 0.00 0.00 2.24
2585 8589 1.135746 GCTGAATGACAAGTGCTCTGC 60.136 52.381 0.00 0.00 0.00 4.26
2635 8639 9.171877 TGCAATTTTTGTTATCTTCAGGTTTTT 57.828 25.926 0.00 0.00 0.00 1.94
2668 8672 1.338200 GCTCTGTTCAAGTCGATGGGT 60.338 52.381 0.00 0.00 0.00 4.51
2758 8762 3.699779 TCACGCTATAAGCTGAGTCAG 57.300 47.619 16.21 16.21 39.60 3.51
2768 8772 2.242926 AGCTGAGTCAGTTGTCTAGCA 58.757 47.619 21.06 0.00 33.43 3.49
2830 8834 7.178274 TCTGCATGTCCAGGTAAAAACATTTAT 59.822 33.333 0.00 0.00 33.64 1.40
3153 9159 8.948631 TTGATCAGACATGAGAAATTAGTACC 57.051 34.615 0.00 0.00 39.29 3.34
3156 9162 7.962995 TCAGACATGAGAAATTAGTACCTCT 57.037 36.000 0.00 0.00 0.00 3.69
3226 9237 7.994911 TCTTGTGGAAGTATAAGATCATGCAAT 59.005 33.333 0.00 0.00 0.00 3.56
3381 9392 9.187996 TCTTTGCAATGTAATATCTCCATTTGA 57.812 29.630 11.67 0.00 0.00 2.69
3382 9393 9.241317 CTTTGCAATGTAATATCTCCATTTGAC 57.759 33.333 0.00 0.00 0.00 3.18
3676 9688 5.746245 TGCTTGTATGTTTTGAAAAACTCCG 59.254 36.000 17.08 4.37 46.37 4.63
3784 9796 3.944015 GCTCCTTGTATGCTTGATGTTCT 59.056 43.478 0.00 0.00 0.00 3.01
3974 9987 6.208007 TCCTCTGAGAATTCACGTGTACTTTA 59.792 38.462 16.51 0.00 0.00 1.85
4026 10039 5.965033 ATGATGGTCATCTATATGGGGTC 57.035 43.478 11.62 0.00 38.60 4.46
4162 10175 3.930848 CCGTGAAGTTACATTGGAGGTAC 59.069 47.826 0.00 0.00 0.00 3.34
4174 10187 2.274760 AGGTACTCCCTCCGTCCG 59.725 66.667 0.00 0.00 40.71 4.79
4175 10188 2.832201 GGTACTCCCTCCGTCCGG 60.832 72.222 0.00 0.00 0.00 5.14
4176 10189 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
4177 10190 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
4178 10191 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
4179 10192 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4180 10193 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4181 10194 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4182 10195 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4183 10196 0.388294 CCCTCCGTCCGGAAATACTC 59.612 60.000 5.23 0.00 44.66 2.59
4184 10197 0.030369 CCTCCGTCCGGAAATACTCG 59.970 60.000 5.23 3.90 44.66 4.18
4185 10198 0.737219 CTCCGTCCGGAAATACTCGT 59.263 55.000 5.23 0.00 44.66 4.18
4186 10199 0.734889 TCCGTCCGGAAATACTCGTC 59.265 55.000 5.23 0.00 42.05 4.20
4187 10200 0.590732 CCGTCCGGAAATACTCGTCG 60.591 60.000 5.23 1.25 37.50 5.12
4188 10201 0.590732 CGTCCGGAAATACTCGTCGG 60.591 60.000 5.23 0.00 41.80 4.79
4189 10202 0.734889 GTCCGGAAATACTCGTCGGA 59.265 55.000 5.23 0.00 46.06 4.55
4190 10203 1.019673 TCCGGAAATACTCGTCGGAG 58.980 55.000 0.00 0.00 43.84 4.63
4202 10215 4.563337 CTCGTCGGAGTAATGGATGTAA 57.437 45.455 0.00 0.00 35.48 2.41
4203 10216 5.122512 CTCGTCGGAGTAATGGATGTAAT 57.877 43.478 0.00 0.00 35.48 1.89
4204 10217 5.524971 TCGTCGGAGTAATGGATGTAATT 57.475 39.130 0.00 0.00 0.00 1.40
4205 10218 6.638096 TCGTCGGAGTAATGGATGTAATTA 57.362 37.500 0.00 0.00 0.00 1.40
4206 10219 6.675026 TCGTCGGAGTAATGGATGTAATTAG 58.325 40.000 0.00 0.00 0.00 1.73
4207 10220 6.487668 TCGTCGGAGTAATGGATGTAATTAGA 59.512 38.462 0.00 0.00 0.00 2.10
4208 10221 7.176165 TCGTCGGAGTAATGGATGTAATTAGAT 59.824 37.037 0.00 0.00 0.00 1.98
4209 10222 7.273598 CGTCGGAGTAATGGATGTAATTAGATG 59.726 40.741 0.00 0.00 0.00 2.90
4210 10223 8.088981 GTCGGAGTAATGGATGTAATTAGATGT 58.911 37.037 0.00 0.00 0.00 3.06
4211 10224 9.304335 TCGGAGTAATGGATGTAATTAGATGTA 57.696 33.333 0.00 0.00 0.00 2.29
4256 10269 9.959749 TTATTTTTAAGCATTTCTTCGACAAGT 57.040 25.926 0.00 0.00 36.25 3.16
4259 10272 9.959749 TTTTTAAGCATTTCTTCGACAAGTATT 57.040 25.926 0.00 0.00 36.25 1.89
4260 10273 9.959749 TTTTAAGCATTTCTTCGACAAGTATTT 57.040 25.926 0.00 0.00 36.25 1.40
4261 10274 9.607285 TTTAAGCATTTCTTCGACAAGTATTTC 57.393 29.630 0.00 0.00 36.25 2.17
4262 10275 6.183309 AGCATTTCTTCGACAAGTATTTCC 57.817 37.500 0.00 0.00 0.00 3.13
4263 10276 5.022021 GCATTTCTTCGACAAGTATTTCCG 58.978 41.667 0.00 0.00 0.00 4.30
4264 10277 5.560148 CATTTCTTCGACAAGTATTTCCGG 58.440 41.667 0.00 0.00 0.00 5.14
4265 10278 4.524316 TTCTTCGACAAGTATTTCCGGA 57.476 40.909 0.00 0.00 0.00 5.14
4266 10279 3.841643 TCTTCGACAAGTATTTCCGGAC 58.158 45.455 1.83 0.00 0.00 4.79
4267 10280 2.267188 TCGACAAGTATTTCCGGACG 57.733 50.000 1.83 0.27 0.00 4.79
4268 10281 1.135315 TCGACAAGTATTTCCGGACGG 60.135 52.381 1.83 3.96 0.00 4.79
4269 10282 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
4270 10283 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
4271 10284 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4272 10285 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4273 10286 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4274 10287 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4275 10288 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
4276 10289 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
4277 10290 0.251742 TTTCCGGACGGAGGGAGTAA 60.252 55.000 13.64 1.47 46.06 2.24
4278 10291 0.032813 TTCCGGACGGAGGGAGTAAT 60.033 55.000 13.64 0.00 46.06 1.89
4279 10292 0.032813 TCCGGACGGAGGGAGTAATT 60.033 55.000 9.76 0.00 39.76 1.40
4280 10293 0.388294 CCGGACGGAGGGAGTAATTC 59.612 60.000 4.40 0.00 37.50 2.17
4281 10294 1.108776 CGGACGGAGGGAGTAATTCA 58.891 55.000 0.00 0.00 0.00 2.57
4282 10295 1.687123 CGGACGGAGGGAGTAATTCAT 59.313 52.381 0.00 0.00 0.00 2.57
4283 10296 2.102588 CGGACGGAGGGAGTAATTCATT 59.897 50.000 0.00 0.00 0.00 2.57
4284 10297 3.467803 GGACGGAGGGAGTAATTCATTG 58.532 50.000 0.00 0.00 0.00 2.82
4285 10298 3.118371 GGACGGAGGGAGTAATTCATTGT 60.118 47.826 0.00 0.00 0.00 2.71
4328 10343 1.455383 CGAAAGCCACCCTTGCTGTT 61.455 55.000 0.00 0.00 39.48 3.16
4533 10552 4.077188 GTGCTGCACGGTCGCTTC 62.077 66.667 17.93 0.00 0.00 3.86
4739 10759 1.818674 CATGTTGGTTTGTAGGGCCTC 59.181 52.381 10.74 2.12 0.00 4.70
4797 10817 8.642935 TTGTGACCCATTCAAGTTTTATATCA 57.357 30.769 0.00 0.00 35.39 2.15
4801 10821 8.250332 TGACCCATTCAAGTTTTATATCAAAGC 58.750 33.333 0.00 0.00 0.00 3.51
5024 11049 6.721318 TGTCTTATTATCCTGCTCCAGTTTT 58.279 36.000 0.00 0.00 0.00 2.43
5069 11094 9.191995 CTTAATGAAGCGGAAAACAATAAACTT 57.808 29.630 0.00 0.00 0.00 2.66
5072 11097 5.974751 TGAAGCGGAAAACAATAAACTTGAC 59.025 36.000 0.00 0.00 0.00 3.18
5074 11099 5.758924 AGCGGAAAACAATAAACTTGACTC 58.241 37.500 0.00 0.00 0.00 3.36
5091 11116 0.033405 CTCGGTTCCTACTCCCTCCA 60.033 60.000 0.00 0.00 0.00 3.86
5197 11286 2.758089 GCTGCCATCGCCACAAGAG 61.758 63.158 0.00 0.00 0.00 2.85
5335 11425 0.602905 GTCCAACCCGGTTCAGACAG 60.603 60.000 18.98 1.71 35.57 3.51
5430 11520 1.296056 CCGGCAAAGATCGGTTCGTT 61.296 55.000 0.00 0.00 41.23 3.85
5702 11813 3.423154 CGGCGTCAGGAAACAGCC 61.423 66.667 0.00 0.00 44.00 4.85
5708 11819 0.586802 GTCAGGAAACAGCCGTTGAC 59.413 55.000 0.00 0.00 34.86 3.18
5737 11848 0.320858 TTTCATGCCGCGTTGTCCTA 60.321 50.000 4.92 0.00 0.00 2.94
5769 11880 4.156922 TGTTCCTTGTTTGACACAATCGTT 59.843 37.500 0.00 0.00 44.72 3.85
5772 11883 4.396478 TCCTTGTTTGACACAATCGTTTGA 59.604 37.500 13.01 0.00 44.72 2.69
5774 11885 3.675481 TGTTTGACACAATCGTTTGACG 58.325 40.909 13.01 6.13 36.08 4.35
5876 12104 4.082026 GCCTAGAGCACCACAATCAAATTT 60.082 41.667 0.00 0.00 42.97 1.82
5974 12856 1.050767 GTGTCTCTGTTACGTGCGTC 58.949 55.000 0.00 0.00 0.00 5.19
6049 12932 9.118236 GCATCGGTCAAAATTATTTTATAGAGC 57.882 33.333 2.37 5.69 0.00 4.09
6050 12933 9.318041 CATCGGTCAAAATTATTTTATAGAGCG 57.682 33.333 22.76 22.76 40.10 5.03
6052 12935 8.545420 TCGGTCAAAATTATTTTATAGAGCGAC 58.455 33.333 25.16 16.59 41.19 5.19
6053 12936 8.548721 CGGTCAAAATTATTTTATAGAGCGACT 58.451 33.333 23.63 0.00 40.58 4.18
6054 12937 9.651718 GGTCAAAATTATTTTATAGAGCGACTG 57.348 33.333 2.37 0.00 0.00 3.51
6084 12967 4.977963 TCAGCTGCATTTTCTTTCTTTTCG 59.022 37.500 9.47 0.00 0.00 3.46
6222 13111 2.158667 AGGTCGGCTCTTTGGAGAAAAA 60.159 45.455 0.00 0.00 41.86 1.94
6250 13139 9.129532 CAGAGATTAAGCTTTTATTCCAATCCT 57.870 33.333 3.20 3.19 0.00 3.24
6261 13150 2.176247 TCCAATCCTACCACTCCCTC 57.824 55.000 0.00 0.00 0.00 4.30
6263 13152 1.344496 CCAATCCTACCACTCCCTCCT 60.344 57.143 0.00 0.00 0.00 3.69
6266 13155 3.835395 CAATCCTACCACTCCCTCCTATC 59.165 52.174 0.00 0.00 0.00 2.08
6267 13156 2.803215 TCCTACCACTCCCTCCTATCT 58.197 52.381 0.00 0.00 0.00 1.98
6268 13157 3.963881 TCCTACCACTCCCTCCTATCTA 58.036 50.000 0.00 0.00 0.00 1.98
6269 13158 4.524312 TCCTACCACTCCCTCCTATCTAT 58.476 47.826 0.00 0.00 0.00 1.98
6270 13159 4.292571 TCCTACCACTCCCTCCTATCTATG 59.707 50.000 0.00 0.00 0.00 2.23
6271 13160 4.044825 CCTACCACTCCCTCCTATCTATGT 59.955 50.000 0.00 0.00 0.00 2.29
6272 13161 4.120946 ACCACTCCCTCCTATCTATGTC 57.879 50.000 0.00 0.00 0.00 3.06
6273 13162 3.467483 ACCACTCCCTCCTATCTATGTCA 59.533 47.826 0.00 0.00 0.00 3.58
6274 13163 3.829601 CCACTCCCTCCTATCTATGTCAC 59.170 52.174 0.00 0.00 0.00 3.67
6275 13164 4.448493 CCACTCCCTCCTATCTATGTCACT 60.448 50.000 0.00 0.00 0.00 3.41
6276 13165 5.144100 CACTCCCTCCTATCTATGTCACTT 58.856 45.833 0.00 0.00 0.00 3.16
6277 13166 5.010516 CACTCCCTCCTATCTATGTCACTTG 59.989 48.000 0.00 0.00 0.00 3.16
6278 13167 5.144100 CTCCCTCCTATCTATGTCACTTGT 58.856 45.833 0.00 0.00 0.00 3.16
6279 13168 5.141182 TCCCTCCTATCTATGTCACTTGTC 58.859 45.833 0.00 0.00 0.00 3.18
6280 13169 4.022762 CCCTCCTATCTATGTCACTTGTCG 60.023 50.000 0.00 0.00 0.00 4.35
6281 13170 4.541779 CTCCTATCTATGTCACTTGTCGC 58.458 47.826 0.00 0.00 0.00 5.19
6282 13171 3.951680 TCCTATCTATGTCACTTGTCGCA 59.048 43.478 0.00 0.00 0.00 5.10
6283 13172 4.036852 TCCTATCTATGTCACTTGTCGCAG 59.963 45.833 0.00 0.00 0.00 5.18
6284 13173 1.996292 TCTATGTCACTTGTCGCAGC 58.004 50.000 0.00 0.00 0.00 5.25
6285 13174 1.546029 TCTATGTCACTTGTCGCAGCT 59.454 47.619 0.00 0.00 0.00 4.24
6286 13175 2.029020 TCTATGTCACTTGTCGCAGCTT 60.029 45.455 0.00 0.00 0.00 3.74
6287 13176 1.597742 ATGTCACTTGTCGCAGCTTT 58.402 45.000 0.00 0.00 0.00 3.51
6288 13177 2.232756 TGTCACTTGTCGCAGCTTTA 57.767 45.000 0.00 0.00 0.00 1.85
6289 13178 2.556257 TGTCACTTGTCGCAGCTTTAA 58.444 42.857 0.00 0.00 0.00 1.52
6290 13179 3.138304 TGTCACTTGTCGCAGCTTTAAT 58.862 40.909 0.00 0.00 0.00 1.40
6291 13180 4.311606 TGTCACTTGTCGCAGCTTTAATA 58.688 39.130 0.00 0.00 0.00 0.98
6292 13181 4.935205 TGTCACTTGTCGCAGCTTTAATAT 59.065 37.500 0.00 0.00 0.00 1.28
6293 13182 6.103330 TGTCACTTGTCGCAGCTTTAATATA 58.897 36.000 0.00 0.00 0.00 0.86
6294 13183 6.592220 TGTCACTTGTCGCAGCTTTAATATAA 59.408 34.615 0.00 0.00 0.00 0.98
6295 13184 7.118535 TGTCACTTGTCGCAGCTTTAATATAAA 59.881 33.333 0.00 0.00 0.00 1.40
6296 13185 7.960738 GTCACTTGTCGCAGCTTTAATATAAAA 59.039 33.333 0.00 0.00 0.00 1.52
6362 13264 4.391830 ACATGATGACATAAACCACACGAC 59.608 41.667 0.00 0.00 35.09 4.34
6385 13287 7.063074 CGACGACCTTGTAGAAAAATAGATGTT 59.937 37.037 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.063174 GACAACGATGAGGATGCTTGC 59.937 52.381 0.00 0.00 0.00 4.01
2 3 1.066858 ACGACAACGATGAGGATGCTT 60.067 47.619 0.00 0.00 42.66 3.91
4 5 0.647410 CACGACAACGATGAGGATGC 59.353 55.000 0.00 0.00 42.66 3.91
8 9 1.078709 AATGCACGACAACGATGAGG 58.921 50.000 0.00 0.00 42.66 3.86
9 10 2.413112 AGAAATGCACGACAACGATGAG 59.587 45.455 0.00 0.00 42.66 2.90
11 12 2.498905 CAGAAATGCACGACAACGATG 58.501 47.619 0.00 0.00 42.66 3.84
12 13 1.464608 CCAGAAATGCACGACAACGAT 59.535 47.619 0.00 0.00 42.66 3.73
13 14 0.865111 CCAGAAATGCACGACAACGA 59.135 50.000 0.00 0.00 42.66 3.85
14 15 0.865111 TCCAGAAATGCACGACAACG 59.135 50.000 0.00 0.00 45.75 4.10
15 16 2.474526 CGATCCAGAAATGCACGACAAC 60.475 50.000 0.00 0.00 0.00 3.32
17 18 1.067213 TCGATCCAGAAATGCACGACA 60.067 47.619 0.00 0.00 0.00 4.35
19 20 1.471501 CCTCGATCCAGAAATGCACGA 60.472 52.381 0.00 0.00 0.00 4.35
22 23 1.554617 TCACCTCGATCCAGAAATGCA 59.445 47.619 0.00 0.00 0.00 3.96
23 24 2.315925 TCACCTCGATCCAGAAATGC 57.684 50.000 0.00 0.00 0.00 3.56
24 25 3.812053 GGATTCACCTCGATCCAGAAATG 59.188 47.826 0.00 0.00 35.41 2.32
25 26 3.455910 TGGATTCACCTCGATCCAGAAAT 59.544 43.478 0.00 0.00 38.19 2.17
26 27 2.837591 TGGATTCACCTCGATCCAGAAA 59.162 45.455 0.00 0.00 38.19 2.52
27 28 2.466846 TGGATTCACCTCGATCCAGAA 58.533 47.619 0.00 0.00 38.19 3.02
28 29 2.159179 TGGATTCACCTCGATCCAGA 57.841 50.000 0.00 0.00 38.19 3.86
29 30 2.169352 ACTTGGATTCACCTCGATCCAG 59.831 50.000 3.57 2.12 43.26 3.86
30 31 2.187958 ACTTGGATTCACCTCGATCCA 58.812 47.619 0.00 0.00 41.05 3.41
33 34 2.749621 GCAAACTTGGATTCACCTCGAT 59.250 45.455 0.00 0.00 39.86 3.59
34 35 2.151202 GCAAACTTGGATTCACCTCGA 58.849 47.619 0.00 0.00 39.86 4.04
35 36 1.200020 GGCAAACTTGGATTCACCTCG 59.800 52.381 0.00 0.00 39.86 4.63
36 37 1.200020 CGGCAAACTTGGATTCACCTC 59.800 52.381 0.00 0.00 39.86 3.85
38 39 0.243636 CCGGCAAACTTGGATTCACC 59.756 55.000 0.00 0.00 39.54 4.02
39 40 0.958822 ACCGGCAAACTTGGATTCAC 59.041 50.000 0.00 0.00 0.00 3.18
40 41 0.958091 CACCGGCAAACTTGGATTCA 59.042 50.000 0.00 0.00 0.00 2.57
42 43 1.665442 GCACCGGCAAACTTGGATT 59.335 52.632 0.00 0.00 40.72 3.01
43 44 3.365535 GCACCGGCAAACTTGGAT 58.634 55.556 0.00 0.00 40.72 3.41
53 54 1.434696 CAAGATGGATTGCACCGGC 59.565 57.895 0.00 0.00 41.68 6.13
60 61 6.860080 ACTACTTCAAATGCAAGATGGATTG 58.140 36.000 0.00 0.00 37.43 2.67
61 62 7.039504 ACAACTACTTCAAATGCAAGATGGATT 60.040 33.333 0.00 0.00 40.20 3.01
62 63 6.435277 ACAACTACTTCAAATGCAAGATGGAT 59.565 34.615 0.00 0.00 0.00 3.41
63 64 5.769662 ACAACTACTTCAAATGCAAGATGGA 59.230 36.000 0.00 0.00 0.00 3.41
64 65 6.017400 ACAACTACTTCAAATGCAAGATGG 57.983 37.500 0.00 0.00 0.00 3.51
65 66 5.791974 CGACAACTACTTCAAATGCAAGATG 59.208 40.000 0.00 0.00 0.00 2.90
66 67 5.700832 TCGACAACTACTTCAAATGCAAGAT 59.299 36.000 0.00 0.00 0.00 2.40
67 68 5.053811 TCGACAACTACTTCAAATGCAAGA 58.946 37.500 0.00 0.00 0.00 3.02
69 70 5.295787 AGTTCGACAACTACTTCAAATGCAA 59.704 36.000 0.00 0.00 41.39 4.08
70 71 4.814234 AGTTCGACAACTACTTCAAATGCA 59.186 37.500 0.00 0.00 41.39 3.96
71 72 5.344207 AGTTCGACAACTACTTCAAATGC 57.656 39.130 0.00 0.00 41.39 3.56
72 73 5.107065 GGGAGTTCGACAACTACTTCAAATG 60.107 44.000 0.00 0.00 43.37 2.32
73 74 4.995487 GGGAGTTCGACAACTACTTCAAAT 59.005 41.667 0.00 0.00 43.37 2.32
74 75 4.374399 GGGAGTTCGACAACTACTTCAAA 58.626 43.478 0.00 0.00 43.37 2.69
75 76 3.551454 CGGGAGTTCGACAACTACTTCAA 60.551 47.826 0.00 0.00 43.37 2.69
76 77 2.030540 CGGGAGTTCGACAACTACTTCA 60.031 50.000 0.00 0.00 43.37 3.02
78 79 1.271656 CCGGGAGTTCGACAACTACTT 59.728 52.381 0.00 0.00 43.37 2.24
79 80 0.886563 CCGGGAGTTCGACAACTACT 59.113 55.000 0.00 0.00 43.37 2.57
80 81 0.883833 TCCGGGAGTTCGACAACTAC 59.116 55.000 0.00 0.00 43.37 2.73
81 82 1.475280 CATCCGGGAGTTCGACAACTA 59.525 52.381 0.00 0.00 43.37 2.24
82 83 0.246635 CATCCGGGAGTTCGACAACT 59.753 55.000 0.00 0.00 46.21 3.16
83 84 0.739813 CCATCCGGGAGTTCGACAAC 60.740 60.000 0.00 0.00 40.01 3.32
84 85 0.901114 TCCATCCGGGAGTTCGACAA 60.901 55.000 0.00 0.00 42.15 3.18
85 86 1.304630 TCCATCCGGGAGTTCGACA 60.305 57.895 0.00 0.00 42.15 4.35
93 94 2.422803 GGATTGTGAATTCCATCCGGGA 60.423 50.000 0.00 0.00 46.61 5.14
94 95 1.956477 GGATTGTGAATTCCATCCGGG 59.044 52.381 0.00 0.00 38.37 5.73
95 96 2.620115 CAGGATTGTGAATTCCATCCGG 59.380 50.000 16.89 14.24 33.67 5.14
97 98 3.887716 CCTCAGGATTGTGAATTCCATCC 59.112 47.826 15.84 15.84 0.00 3.51
99 100 4.868172 TCCTCAGGATTGTGAATTCCAT 57.132 40.909 2.27 0.00 0.00 3.41
100 101 4.656100 TTCCTCAGGATTGTGAATTCCA 57.344 40.909 0.00 0.00 0.00 3.53
101 102 5.623141 GCTTTTCCTCAGGATTGTGAATTCC 60.623 44.000 0.00 0.00 0.00 3.01
103 104 5.082425 AGCTTTTCCTCAGGATTGTGAATT 58.918 37.500 0.00 0.00 0.00 2.17
105 106 4.104383 AGCTTTTCCTCAGGATTGTGAA 57.896 40.909 0.00 0.00 0.00 3.18
106 107 3.795688 AGCTTTTCCTCAGGATTGTGA 57.204 42.857 0.00 0.00 0.00 3.58
107 108 4.522022 AGAAAGCTTTTCCTCAGGATTGTG 59.478 41.667 14.05 0.00 0.00 3.33
109 110 4.617762 GCAGAAAGCTTTTCCTCAGGATTG 60.618 45.833 14.05 0.00 41.15 2.67
110 111 3.509184 GCAGAAAGCTTTTCCTCAGGATT 59.491 43.478 14.05 0.00 41.15 3.01
112 113 2.508526 GCAGAAAGCTTTTCCTCAGGA 58.491 47.619 14.05 0.00 41.15 3.86
125 126 1.743252 GGTCGCCCTGAGCAGAAAG 60.743 63.158 0.00 0.00 44.60 2.62
126 127 2.347490 GGTCGCCCTGAGCAGAAA 59.653 61.111 0.00 0.00 44.60 2.52
127 128 4.069232 CGGTCGCCCTGAGCAGAA 62.069 66.667 0.00 0.00 45.52 3.02
131 132 4.200283 CTCTCGGTCGCCCTGAGC 62.200 72.222 6.02 0.00 41.76 4.26
132 133 4.200283 GCTCTCGGTCGCCCTGAG 62.200 72.222 4.81 4.81 34.62 3.35
158 159 3.539593 TTCCTCGACCAGCCTCCCA 62.540 63.158 0.00 0.00 0.00 4.37
159 160 2.683933 TTCCTCGACCAGCCTCCC 60.684 66.667 0.00 0.00 0.00 4.30
160 161 1.258445 TTCTTCCTCGACCAGCCTCC 61.258 60.000 0.00 0.00 0.00 4.30
162 163 1.056660 TTTTCTTCCTCGACCAGCCT 58.943 50.000 0.00 0.00 0.00 4.58
163 164 1.892209 TTTTTCTTCCTCGACCAGCC 58.108 50.000 0.00 0.00 0.00 4.85
164 165 3.339141 AGATTTTTCTTCCTCGACCAGC 58.661 45.455 0.00 0.00 0.00 4.85
166 167 4.755123 GTCAAGATTTTTCTTCCTCGACCA 59.245 41.667 0.00 0.00 0.00 4.02
168 169 6.546972 AAGTCAAGATTTTTCTTCCTCGAC 57.453 37.500 0.00 0.00 0.00 4.20
171 172 7.649705 GGTGAAAAGTCAAGATTTTTCTTCCTC 59.350 37.037 22.68 12.58 43.24 3.71
173 174 7.492524 AGGTGAAAAGTCAAGATTTTTCTTCC 58.507 34.615 22.68 22.16 43.24 3.46
176 177 9.971922 CATTAGGTGAAAAGTCAAGATTTTTCT 57.028 29.630 22.68 11.57 43.24 2.52
177 178 9.196552 CCATTAGGTGAAAAGTCAAGATTTTTC 57.803 33.333 18.30 18.30 43.18 2.29
178 179 7.657354 GCCATTAGGTGAAAAGTCAAGATTTTT 59.343 33.333 3.38 3.38 34.87 1.94
179 180 7.154656 GCCATTAGGTGAAAAGTCAAGATTTT 58.845 34.615 0.00 0.00 34.87 1.82
180 181 6.691508 GCCATTAGGTGAAAAGTCAAGATTT 58.308 36.000 0.00 0.00 34.87 2.17
181 182 6.272822 GCCATTAGGTGAAAAGTCAAGATT 57.727 37.500 0.00 0.00 34.87 2.40
182 183 5.904362 GCCATTAGGTGAAAAGTCAAGAT 57.096 39.130 0.00 0.00 34.87 2.40
195 196 1.602237 CTGACCCACGCCATTAGGT 59.398 57.895 0.00 0.00 37.19 3.08
196 197 1.819632 GCTGACCCACGCCATTAGG 60.820 63.158 0.00 0.00 38.23 2.69
197 198 1.819632 GGCTGACCCACGCCATTAG 60.820 63.158 0.00 0.00 45.59 1.73
198 199 2.270850 GGCTGACCCACGCCATTA 59.729 61.111 0.00 0.00 45.59 1.90
207 208 4.103103 GAAAAGCGCGGCTGACCC 62.103 66.667 8.83 0.00 39.62 4.46
209 210 4.103103 GGGAAAAGCGCGGCTGAC 62.103 66.667 8.83 1.35 39.62 3.51
210 211 3.842925 AAGGGAAAAGCGCGGCTGA 62.843 57.895 8.83 0.00 39.62 4.26
212 213 3.365265 CAAGGGAAAAGCGCGGCT 61.365 61.111 8.83 2.05 42.56 5.52
214 215 4.759096 CGCAAGGGAAAAGCGCGG 62.759 66.667 8.83 0.00 45.14 6.46
219 220 1.912371 GCTCCGACGCAAGGGAAAAG 61.912 60.000 0.00 0.00 46.39 2.27
221 222 2.358247 GCTCCGACGCAAGGGAAA 60.358 61.111 0.00 0.00 46.39 3.13
222 223 4.388499 GGCTCCGACGCAAGGGAA 62.388 66.667 0.00 0.00 46.39 3.97
230 231 4.760047 CACTTGGGGGCTCCGACG 62.760 72.222 0.00 0.00 38.76 5.12
295 296 2.046314 AGGACGATGCCGGTTTGG 60.046 61.111 1.90 0.00 40.78 3.28
296 297 2.398554 CCAGGACGATGCCGGTTTG 61.399 63.158 1.90 0.00 40.78 2.93
297 298 2.046314 CCAGGACGATGCCGGTTT 60.046 61.111 1.90 0.00 40.78 3.27
298 299 4.096003 CCCAGGACGATGCCGGTT 62.096 66.667 1.90 0.00 40.78 4.44
317 318 2.258286 AAAAATGCCCAGTCGCGC 59.742 55.556 0.00 0.00 0.00 6.86
342 343 3.097114 GCAACTTTTTCGGCGCCG 61.097 61.111 42.13 42.13 41.35 6.46
389 390 2.551938 GGGGGATGAAGCTAAGAGCATC 60.552 54.545 0.64 0.00 45.56 3.91
390 391 1.423161 GGGGGATGAAGCTAAGAGCAT 59.577 52.381 0.64 0.00 45.56 3.79
392 393 0.839946 TGGGGGATGAAGCTAAGAGC 59.160 55.000 0.00 0.00 42.84 4.09
393 394 3.393941 AGATTGGGGGATGAAGCTAAGAG 59.606 47.826 0.00 0.00 0.00 2.85
395 396 3.117738 ACAGATTGGGGGATGAAGCTAAG 60.118 47.826 0.00 0.00 0.00 2.18
397 398 2.439507 GACAGATTGGGGGATGAAGCTA 59.560 50.000 0.00 0.00 0.00 3.32
398 399 1.213926 GACAGATTGGGGGATGAAGCT 59.786 52.381 0.00 0.00 0.00 3.74
400 401 1.849039 AGGACAGATTGGGGGATGAAG 59.151 52.381 0.00 0.00 0.00 3.02
401 402 1.846439 GAGGACAGATTGGGGGATGAA 59.154 52.381 0.00 0.00 0.00 2.57
402 403 1.010046 AGAGGACAGATTGGGGGATGA 59.990 52.381 0.00 0.00 0.00 2.92
403 404 1.419387 GAGAGGACAGATTGGGGGATG 59.581 57.143 0.00 0.00 0.00 3.51
404 405 1.010046 TGAGAGGACAGATTGGGGGAT 59.990 52.381 0.00 0.00 0.00 3.85
424 815 2.519780 GGTCGCGGGAGAGGAGAT 60.520 66.667 6.13 0.00 0.00 2.75
447 838 1.690633 GAGGATGAGGGAGGTGGCA 60.691 63.158 0.00 0.00 0.00 4.92
503 904 1.848431 GAGGGGAGGAATAGGGGGC 60.848 68.421 0.00 0.00 0.00 5.80
550 951 2.112297 GTGGTGCCGAACAGGGAA 59.888 61.111 0.00 0.00 44.00 3.97
651 1053 2.534019 CGGCGAGCTGTTGTGTTGT 61.534 57.895 0.00 0.00 0.00 3.32
754 1957 2.507407 TCAACAATAGTCAAGGGGGC 57.493 50.000 0.00 0.00 0.00 5.80
755 1958 4.096382 CGAAATCAACAATAGTCAAGGGGG 59.904 45.833 0.00 0.00 0.00 5.40
770 1984 8.744008 TTTGTACAGTTTTGTTTCGAAATCAA 57.256 26.923 14.69 15.92 38.76 2.57
780 3134 4.822896 TCCGCCTATTTGTACAGTTTTGTT 59.177 37.500 0.00 0.00 38.76 2.83
791 3145 2.871096 TCCTTGTTCCGCCTATTTGT 57.129 45.000 0.00 0.00 0.00 2.83
800 3154 1.971695 GTGGGCCTTCCTTGTTCCG 60.972 63.158 4.53 0.00 36.20 4.30
805 3159 1.604593 CACTGGTGGGCCTTCCTTG 60.605 63.158 16.59 12.38 36.20 3.61
806 3160 1.360393 TTCACTGGTGGGCCTTCCTT 61.360 55.000 16.59 4.27 36.20 3.36
811 3165 3.971702 GCCTTCACTGGTGGGCCT 61.972 66.667 4.53 0.00 38.77 5.19
857 3211 4.821589 GAGGGAGCTTGGTCGCGG 62.822 72.222 6.13 0.00 34.65 6.46
860 3214 1.144936 GATGGAGGGAGCTTGGTCG 59.855 63.158 0.00 0.00 0.00 4.79
861 3215 0.620556 TTGATGGAGGGAGCTTGGTC 59.379 55.000 0.00 0.00 0.00 4.02
862 3216 1.005215 CTTTGATGGAGGGAGCTTGGT 59.995 52.381 0.00 0.00 0.00 3.67
864 3218 1.101331 GCTTTGATGGAGGGAGCTTG 58.899 55.000 0.00 0.00 0.00 4.01
865 3219 0.700564 TGCTTTGATGGAGGGAGCTT 59.299 50.000 0.00 0.00 34.56 3.74
866 3220 0.255318 CTGCTTTGATGGAGGGAGCT 59.745 55.000 0.00 0.00 34.56 4.09
867 3221 1.382692 GCTGCTTTGATGGAGGGAGC 61.383 60.000 0.00 0.00 36.17 4.70
869 3223 0.322816 GTGCTGCTTTGATGGAGGGA 60.323 55.000 0.00 0.00 0.00 4.20
870 3224 1.651240 CGTGCTGCTTTGATGGAGGG 61.651 60.000 0.00 0.00 0.00 4.30
871 3225 1.798735 CGTGCTGCTTTGATGGAGG 59.201 57.895 0.00 0.00 0.00 4.30
872 3226 1.136147 GCGTGCTGCTTTGATGGAG 59.864 57.895 0.00 0.00 41.73 3.86
873 3227 1.579964 CTGCGTGCTGCTTTGATGGA 61.580 55.000 0.00 0.00 46.63 3.41
874 3228 1.154093 CTGCGTGCTGCTTTGATGG 60.154 57.895 0.00 0.00 46.63 3.51
875 3229 0.179197 CTCTGCGTGCTGCTTTGATG 60.179 55.000 0.00 0.00 46.63 3.07
878 3232 2.559840 CCTCTGCGTGCTGCTTTG 59.440 61.111 0.00 0.00 46.63 2.77
894 3248 1.807573 CGTGCTCTTCTTCTCGGCC 60.808 63.158 0.00 0.00 0.00 6.13
898 3252 2.926838 GTCAATCCGTGCTCTTCTTCTC 59.073 50.000 0.00 0.00 0.00 2.87
910 3264 2.337583 CAGTCGTCAATGTCAATCCGT 58.662 47.619 0.00 0.00 0.00 4.69
911 3265 1.061131 GCAGTCGTCAATGTCAATCCG 59.939 52.381 0.00 0.00 0.00 4.18
912 3266 2.094894 CAGCAGTCGTCAATGTCAATCC 59.905 50.000 0.00 0.00 0.00 3.01
913 3267 2.094894 CCAGCAGTCGTCAATGTCAATC 59.905 50.000 0.00 0.00 0.00 2.67
914 3268 2.079158 CCAGCAGTCGTCAATGTCAAT 58.921 47.619 0.00 0.00 0.00 2.57
915 3269 1.511850 CCAGCAGTCGTCAATGTCAA 58.488 50.000 0.00 0.00 0.00 3.18
992 4610 4.812476 TGGAAGACATCGCCGGCG 62.812 66.667 42.13 42.13 41.35 6.46
1166 4808 2.127708 CCCCAGAGCCAAATACTAGGT 58.872 52.381 0.00 0.00 0.00 3.08
1262 4905 1.744320 ATATACAGGCTGCGCGGACA 61.744 55.000 27.06 3.28 0.00 4.02
1265 4908 0.944386 AAAATATACAGGCTGCGCGG 59.056 50.000 15.89 13.18 0.00 6.46
1272 4915 6.613755 TCCGAAAGCTAAAAATATACAGGC 57.386 37.500 0.00 0.00 0.00 4.85
1273 4916 7.228706 ACCATCCGAAAGCTAAAAATATACAGG 59.771 37.037 0.00 0.00 0.00 4.00
1274 4917 8.070171 CACCATCCGAAAGCTAAAAATATACAG 58.930 37.037 0.00 0.00 0.00 2.74
1286 4933 1.741770 GCGTCACCATCCGAAAGCT 60.742 57.895 0.00 0.00 0.00 3.74
1302 4949 1.564622 CGAGGATTAATGGCACGCG 59.435 57.895 3.53 3.53 0.00 6.01
1305 4952 1.668419 ACTGCGAGGATTAATGGCAC 58.332 50.000 0.00 0.00 0.00 5.01
1306 4953 3.769739 ATACTGCGAGGATTAATGGCA 57.230 42.857 0.00 0.00 0.00 4.92
1361 5010 0.321996 GAGAGAAAGCTCAACCCCGT 59.678 55.000 0.00 0.00 43.81 5.28
1447 5129 3.110293 TCCGACTAAATCCCCTTCAGA 57.890 47.619 0.00 0.00 0.00 3.27
1460 5142 4.338964 TGTACGCCTTGAATAATCCGACTA 59.661 41.667 0.00 0.00 0.00 2.59
1472 5154 0.948678 GGCTTGTTTGTACGCCTTGA 59.051 50.000 0.45 0.00 39.42 3.02
1479 5161 5.366829 AAAGAATACGGGCTTGTTTGTAC 57.633 39.130 0.00 0.00 0.00 2.90
1482 5164 5.411669 AGAGTAAAGAATACGGGCTTGTTTG 59.588 40.000 0.00 0.00 0.00 2.93
1519 5201 8.445275 TGGCGAGACATATGTTTGTATTATTT 57.555 30.769 10.30 0.00 0.00 1.40
1520 5202 8.445275 TTGGCGAGACATATGTTTGTATTATT 57.555 30.769 10.30 0.00 0.00 1.40
1521 5203 8.621532 ATTGGCGAGACATATGTTTGTATTAT 57.378 30.769 10.30 0.00 0.00 1.28
1529 5211 4.142609 ACTGATTGGCGAGACATATGTT 57.857 40.909 10.30 0.00 0.00 2.71
1614 5300 7.743104 ACGAACTTGCTATGAAGTAAAATGAG 58.257 34.615 0.00 0.00 35.01 2.90
1714 5412 5.680665 GCTGGGAAAAACCAATGATCTCATC 60.681 44.000 0.00 0.00 40.68 2.92
1817 7809 1.809684 GGTAAGCACCAGGAGTTCAC 58.190 55.000 0.00 0.00 45.04 3.18
1852 7845 6.436532 CCTGTTACTAGACTCAGGGAAAGTTA 59.563 42.308 17.45 0.00 42.38 2.24
1861 7854 2.223066 CGACGCCTGTTACTAGACTCAG 60.223 54.545 0.00 1.47 0.00 3.35
1866 7864 0.169672 GTGCGACGCCTGTTACTAGA 59.830 55.000 18.69 0.00 0.00 2.43
1867 7865 0.170561 AGTGCGACGCCTGTTACTAG 59.829 55.000 18.69 0.00 0.00 2.57
1880 7878 5.756347 ACAGATTAAGTTAACACAAGTGCGA 59.244 36.000 8.61 0.00 0.00 5.10
1912 7913 6.627690 TCGAGATACAAAAGTAAGCTTTCG 57.372 37.500 3.20 3.14 43.52 3.46
1934 7935 5.053145 AGCAGACAGATCGTTCCAATAATC 58.947 41.667 0.00 0.00 0.00 1.75
1939 7940 3.258372 ACTTAGCAGACAGATCGTTCCAA 59.742 43.478 0.00 0.00 0.00 3.53
1940 7941 2.826128 ACTTAGCAGACAGATCGTTCCA 59.174 45.455 0.00 0.00 0.00 3.53
2073 8077 2.929301 AGGGAAATGGGTTAGGTGAGA 58.071 47.619 0.00 0.00 0.00 3.27
2635 8639 4.689071 TGAACAGAGCAGTTAGTTTTCGA 58.311 39.130 0.00 0.00 0.00 3.71
2668 8672 4.817318 TGTATCATACACTGCCTTCACA 57.183 40.909 0.00 0.00 32.89 3.58
2768 8772 4.600062 AGACTGGTTCCAACTTCTTTGTT 58.400 39.130 0.00 0.00 32.71 2.83
2830 8834 6.007936 AGCAAAAGTGACGCATATTTTGTA 57.992 33.333 20.47 0.00 42.09 2.41
3117 9121 8.098912 TCTCATGTCTGATCAAAGATCTGAAAA 58.901 33.333 15.21 9.34 0.00 2.29
3244 9255 7.007723 ACCAGAAAATTGTACTGTATTTCCCA 58.992 34.615 7.61 0.00 31.91 4.37
3249 9260 7.001674 TGGTCACCAGAAAATTGTACTGTATT 58.998 34.615 0.00 0.00 0.00 1.89
3251 9262 5.931294 TGGTCACCAGAAAATTGTACTGTA 58.069 37.500 0.00 0.00 0.00 2.74
3252 9263 4.787551 TGGTCACCAGAAAATTGTACTGT 58.212 39.130 0.00 0.00 0.00 3.55
3457 9468 5.006358 CGGCCTACACAATACATTCAAGTAC 59.994 44.000 0.00 0.00 0.00 2.73
3676 9688 5.986135 ACCATGAAAGTGATATAAGCGTCTC 59.014 40.000 0.00 0.00 0.00 3.36
3873 9885 6.401047 CGACAGTCGATTAAATCAAAGCTTCA 60.401 38.462 18.63 0.00 43.74 3.02
3974 9987 8.336806 CAACATTTGTTAATCTGTGTTGCAATT 58.663 29.630 0.59 0.00 39.66 2.32
4026 10039 4.087892 CCACCCGAGCCACCAGAG 62.088 72.222 0.00 0.00 0.00 3.35
4162 10175 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4164 10177 0.388294 GAGTATTTCCGGACGGAGGG 59.612 60.000 13.64 0.00 46.06 4.30
4166 10179 0.737219 ACGAGTATTTCCGGACGGAG 59.263 55.000 13.64 3.15 46.06 4.63
4168 10181 0.590732 CGACGAGTATTTCCGGACGG 60.591 60.000 1.83 3.96 0.00 4.79
4169 10182 0.590732 CCGACGAGTATTTCCGGACG 60.591 60.000 1.83 5.89 42.49 4.79
4170 10183 0.734889 TCCGACGAGTATTTCCGGAC 59.265 55.000 1.83 0.00 43.47 4.79
4171 10184 1.019673 CTCCGACGAGTATTTCCGGA 58.980 55.000 0.00 0.00 45.74 5.14
4172 10185 3.546407 CTCCGACGAGTATTTCCGG 57.454 57.895 0.00 0.00 41.36 5.14
4181 10194 4.563337 TTACATCCATTACTCCGACGAG 57.437 45.455 0.00 0.00 42.32 4.18
4182 10195 5.524971 AATTACATCCATTACTCCGACGA 57.475 39.130 0.00 0.00 0.00 4.20
4183 10196 6.675026 TCTAATTACATCCATTACTCCGACG 58.325 40.000 0.00 0.00 0.00 5.12
4184 10197 8.088981 ACATCTAATTACATCCATTACTCCGAC 58.911 37.037 0.00 0.00 0.00 4.79
4185 10198 8.190326 ACATCTAATTACATCCATTACTCCGA 57.810 34.615 0.00 0.00 0.00 4.55
4230 10243 9.959749 ACTTGTCGAAGAAATGCTTAAAAATAA 57.040 25.926 0.00 0.00 39.69 1.40
4233 10246 9.959749 AATACTTGTCGAAGAAATGCTTAAAAA 57.040 25.926 0.00 0.00 39.69 1.94
4234 10247 9.959749 AAATACTTGTCGAAGAAATGCTTAAAA 57.040 25.926 0.00 0.00 39.69 1.52
4235 10248 9.607285 GAAATACTTGTCGAAGAAATGCTTAAA 57.393 29.630 0.00 0.00 39.69 1.52
4236 10249 8.234546 GGAAATACTTGTCGAAGAAATGCTTAA 58.765 33.333 0.00 0.00 39.69 1.85
4237 10250 7.412563 CGGAAATACTTGTCGAAGAAATGCTTA 60.413 37.037 0.00 0.00 39.69 3.09
4238 10251 6.612306 GGAAATACTTGTCGAAGAAATGCTT 58.388 36.000 0.00 0.00 39.69 3.91
4239 10252 5.163854 CGGAAATACTTGTCGAAGAAATGCT 60.164 40.000 0.00 0.00 39.69 3.79
4240 10253 5.022021 CGGAAATACTTGTCGAAGAAATGC 58.978 41.667 0.00 0.00 39.69 3.56
4241 10254 5.350365 TCCGGAAATACTTGTCGAAGAAATG 59.650 40.000 0.00 0.00 39.69 2.32
4242 10255 5.350640 GTCCGGAAATACTTGTCGAAGAAAT 59.649 40.000 5.23 0.00 39.69 2.17
4243 10256 4.687483 GTCCGGAAATACTTGTCGAAGAAA 59.313 41.667 5.23 0.00 39.69 2.52
4244 10257 4.240096 GTCCGGAAATACTTGTCGAAGAA 58.760 43.478 5.23 0.00 39.69 2.52
4245 10258 3.671433 CGTCCGGAAATACTTGTCGAAGA 60.671 47.826 5.23 0.00 32.98 2.87
4246 10259 2.597305 CGTCCGGAAATACTTGTCGAAG 59.403 50.000 5.23 0.00 35.07 3.79
4247 10260 2.598589 CGTCCGGAAATACTTGTCGAA 58.401 47.619 5.23 0.00 0.00 3.71
4248 10261 1.135315 CCGTCCGGAAATACTTGTCGA 60.135 52.381 5.23 0.00 37.50 4.20
4249 10262 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
4250 10263 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4251 10264 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4252 10265 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4253 10266 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4254 10267 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4255 10268 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4256 10269 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4257 10270 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4258 10271 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
4259 10272 0.032813 ATTACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
4260 10273 0.032813 AATTACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14
4261 10274 0.388294 GAATTACTCCCTCCGTCCGG 59.612 60.000 0.00 0.00 0.00 5.14
4262 10275 1.108776 TGAATTACTCCCTCCGTCCG 58.891 55.000 0.00 0.00 0.00 4.79
4263 10276 3.118371 ACAATGAATTACTCCCTCCGTCC 60.118 47.826 0.00 0.00 0.00 4.79
4264 10277 4.120589 GACAATGAATTACTCCCTCCGTC 58.879 47.826 0.00 0.00 0.00 4.79
4265 10278 3.118371 GGACAATGAATTACTCCCTCCGT 60.118 47.826 0.00 0.00 0.00 4.69
4266 10279 3.467803 GGACAATGAATTACTCCCTCCG 58.532 50.000 0.00 0.00 0.00 4.63
4267 10280 3.435169 GGGGACAATGAATTACTCCCTCC 60.435 52.174 13.82 0.00 36.69 4.30
4268 10281 3.202151 TGGGGACAATGAATTACTCCCTC 59.798 47.826 13.82 7.87 36.69 4.30
4269 10282 3.197983 TGGGGACAATGAATTACTCCCT 58.802 45.455 13.82 0.00 36.69 4.20
4270 10283 3.662759 TGGGGACAATGAATTACTCCC 57.337 47.619 8.56 8.56 37.44 4.30
4284 10297 2.225117 CCAATTAGGGATGGATGGGGAC 60.225 54.545 0.00 0.00 39.12 4.46
4285 10298 2.072973 CCAATTAGGGATGGATGGGGA 58.927 52.381 0.00 0.00 39.12 4.81
4319 10334 2.256461 GCGAAGGCAACAGCAAGG 59.744 61.111 0.00 0.00 39.62 3.61
4480 10497 0.034186 TACCTGAAGGGCAAGCCATG 60.034 55.000 13.87 0.00 40.27 3.66
4533 10552 9.877178 TCCTAAAGCTCAGAAAGAAGTTATTAG 57.123 33.333 0.00 0.00 0.00 1.73
4755 10775 8.561769 TGGGTCACAAGGGATATAGAATTAAAA 58.438 33.333 0.00 0.00 0.00 1.52
5053 11078 5.144359 CCGAGTCAAGTTTATTGTTTTCCG 58.856 41.667 0.00 0.00 0.00 4.30
5069 11094 0.702902 AGGGAGTAGGAACCGAGTCA 59.297 55.000 10.09 0.00 0.00 3.41
5072 11097 0.033405 TGGAGGGAGTAGGAACCGAG 60.033 60.000 0.00 0.00 0.00 4.63
5074 11099 1.041437 GATGGAGGGAGTAGGAACCG 58.959 60.000 0.00 0.00 0.00 4.44
5138 11227 9.670442 AGTGATAATTATAAAGTACTCCCTCCA 57.330 33.333 0.00 0.00 0.00 3.86
5174 11263 2.033911 TGGCGATGGCAGCAAGAA 59.966 55.556 2.73 0.00 42.47 2.52
5197 11286 4.503741 TGACTGGCATCAAGTAAAAAGC 57.496 40.909 0.00 0.00 0.00 3.51
5335 11425 2.688364 GTGCAAGTACCTCTTTGCAC 57.312 50.000 25.52 25.52 44.63 4.57
5396 11486 1.523154 GCCGGCATCACCAGTTTTGA 61.523 55.000 24.80 0.00 39.03 2.69
5430 11520 1.135517 TGACGATGAATTCTCGACGCA 60.136 47.619 24.43 17.91 39.38 5.24
5507 11599 3.214328 CCCTTGGTAATGATGCCTGTAC 58.786 50.000 0.00 0.00 31.58 2.90
5550 11645 3.209410 CCTATGGCCTAGCAAAACTCAG 58.791 50.000 3.32 0.00 0.00 3.35
5582 11677 6.824305 ATTACACAAGATCACCAAGAAAGG 57.176 37.500 0.00 0.00 0.00 3.11
5679 11789 0.879090 GTTTCCTGACGCCGGAATTT 59.121 50.000 5.05 0.00 40.05 1.82
5680 11790 0.250553 TGTTTCCTGACGCCGGAATT 60.251 50.000 5.05 0.00 40.05 2.17
5681 11791 0.673644 CTGTTTCCTGACGCCGGAAT 60.674 55.000 5.05 0.00 40.05 3.01
5686 11796 3.423154 CGGCTGTTTCCTGACGCC 61.423 66.667 0.00 0.00 34.14 5.68
5702 11813 2.766313 TGAAATCACCAGAGGTCAACG 58.234 47.619 0.00 0.00 31.02 4.10
5708 11819 1.019673 CGGCATGAAATCACCAGAGG 58.980 55.000 0.00 0.00 0.00 3.69
5737 11848 5.593909 TGTCAAACAAGGAACAAGACATCAT 59.406 36.000 0.00 0.00 30.43 2.45
5769 11880 4.555116 GCCGTTGAAAACCTATTTCGTCAA 60.555 41.667 0.00 0.00 46.28 3.18
5772 11883 3.143728 AGCCGTTGAAAACCTATTTCGT 58.856 40.909 0.00 0.00 46.28 3.85
5774 11885 3.673338 GCAAGCCGTTGAAAACCTATTTC 59.327 43.478 0.00 0.00 46.28 2.17
5775 11886 3.068873 TGCAAGCCGTTGAAAACCTATTT 59.931 39.130 0.00 0.00 46.28 1.40
5776 11887 2.625790 TGCAAGCCGTTGAAAACCTATT 59.374 40.909 0.00 0.00 46.28 1.73
5778 11889 1.681538 TGCAAGCCGTTGAAAACCTA 58.318 45.000 0.00 0.00 46.28 3.08
5779 11890 0.820871 TTGCAAGCCGTTGAAAACCT 59.179 45.000 0.00 0.00 46.28 3.50
5780 11891 0.927537 GTTGCAAGCCGTTGAAAACC 59.072 50.000 0.00 0.00 46.28 3.27
5781 11892 1.921243 AGTTGCAAGCCGTTGAAAAC 58.079 45.000 0.00 0.00 45.31 2.43
5876 12104 2.760634 TAATCCGCTCTGCAAAGTCA 57.239 45.000 0.00 0.00 0.00 3.41
5932 12160 0.179070 GGGGAGGAATTCGTCTGCTC 60.179 60.000 23.36 12.60 0.00 4.26
5974 12856 1.065491 TGATCTCACAATCCCCGTTGG 60.065 52.381 0.00 0.00 33.40 3.77
6043 12926 2.884012 CTGATCTCACCAGTCGCTCTAT 59.116 50.000 0.00 0.00 0.00 1.98
6045 12928 1.102154 CTGATCTCACCAGTCGCTCT 58.898 55.000 0.00 0.00 0.00 4.09
6046 12929 0.527385 GCTGATCTCACCAGTCGCTC 60.527 60.000 0.00 0.00 34.29 5.03
6047 12930 0.969917 AGCTGATCTCACCAGTCGCT 60.970 55.000 0.00 0.00 34.29 4.93
6048 12931 0.805322 CAGCTGATCTCACCAGTCGC 60.805 60.000 8.42 0.00 34.29 5.19
6049 12932 0.805322 GCAGCTGATCTCACCAGTCG 60.805 60.000 20.43 0.00 34.29 4.18
6050 12933 0.248565 TGCAGCTGATCTCACCAGTC 59.751 55.000 20.43 0.00 34.29 3.51
6052 12935 2.039818 AATGCAGCTGATCTCACCAG 57.960 50.000 20.43 0.00 34.88 4.00
6053 12936 2.502142 AAATGCAGCTGATCTCACCA 57.498 45.000 20.43 3.86 0.00 4.17
6054 12937 3.015327 AGAAAATGCAGCTGATCTCACC 58.985 45.455 20.43 0.00 0.00 4.02
6133 13022 4.376176 CCCCACGGTCGGCGTTAA 62.376 66.667 6.85 0.00 0.00 2.01
6223 13112 8.907885 GGATTGGAATAAAAGCTTAATCTCTGT 58.092 33.333 0.00 0.00 0.00 3.41
6224 13113 9.129532 AGGATTGGAATAAAAGCTTAATCTCTG 57.870 33.333 0.00 0.00 0.00 3.35
6233 13122 6.079712 AGTGGTAGGATTGGAATAAAAGCT 57.920 37.500 0.00 0.00 0.00 3.74
6236 13125 5.494706 AGGGAGTGGTAGGATTGGAATAAAA 59.505 40.000 0.00 0.00 0.00 1.52
6246 13135 3.350747 AGATAGGAGGGAGTGGTAGGAT 58.649 50.000 0.00 0.00 0.00 3.24
6247 13136 2.803215 AGATAGGAGGGAGTGGTAGGA 58.197 52.381 0.00 0.00 0.00 2.94
6250 13139 4.668335 TGACATAGATAGGAGGGAGTGGTA 59.332 45.833 0.00 0.00 0.00 3.25
6261 13150 4.294232 CTGCGACAAGTGACATAGATAGG 58.706 47.826 0.00 0.00 0.00 2.57
6263 13152 3.381590 AGCTGCGACAAGTGACATAGATA 59.618 43.478 0.00 0.00 0.00 1.98
6266 13155 2.001812 AGCTGCGACAAGTGACATAG 57.998 50.000 0.00 0.00 0.00 2.23
6267 13156 2.455674 AAGCTGCGACAAGTGACATA 57.544 45.000 0.00 0.00 0.00 2.29
6268 13157 1.597742 AAAGCTGCGACAAGTGACAT 58.402 45.000 0.00 0.00 0.00 3.06
6269 13158 2.232756 TAAAGCTGCGACAAGTGACA 57.767 45.000 0.00 0.00 0.00 3.58
6270 13159 3.813529 ATTAAAGCTGCGACAAGTGAC 57.186 42.857 0.00 0.00 0.00 3.67
6271 13160 7.603963 TTTATATTAAAGCTGCGACAAGTGA 57.396 32.000 0.00 0.00 0.00 3.41
6272 13161 7.962918 AGTTTTATATTAAAGCTGCGACAAGTG 59.037 33.333 0.00 0.00 0.00 3.16
6273 13162 8.040716 AGTTTTATATTAAAGCTGCGACAAGT 57.959 30.769 0.00 0.00 0.00 3.16
6332 13221 9.072375 TGTGGTTTATGTCATCATGTCTTTTTA 57.928 29.630 0.00 0.00 35.70 1.52
6346 13235 1.723003 GGTCGTCGTGTGGTTTATGTC 59.277 52.381 0.00 0.00 0.00 3.06
6347 13236 1.342174 AGGTCGTCGTGTGGTTTATGT 59.658 47.619 0.00 0.00 0.00 2.29
6348 13237 2.074547 AGGTCGTCGTGTGGTTTATG 57.925 50.000 0.00 0.00 0.00 1.90
6349 13238 2.224113 ACAAGGTCGTCGTGTGGTTTAT 60.224 45.455 0.00 0.00 36.74 1.40
6350 13239 1.136695 ACAAGGTCGTCGTGTGGTTTA 59.863 47.619 0.00 0.00 36.74 2.01
6352 13241 0.746063 TACAAGGTCGTCGTGTGGTT 59.254 50.000 9.32 0.00 38.48 3.67
6353 13242 0.313043 CTACAAGGTCGTCGTGTGGT 59.687 55.000 9.32 0.00 38.48 4.16
6355 13244 2.410785 TTCTACAAGGTCGTCGTGTG 57.589 50.000 9.32 0.00 38.48 3.82
6356 13245 3.441496 TTTTCTACAAGGTCGTCGTGT 57.559 42.857 0.00 5.67 40.92 4.49
6362 13264 8.251750 TCAACATCTATTTTTCTACAAGGTCG 57.748 34.615 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.