Multiple sequence alignment - TraesCS5B01G392500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G392500 chr5B 100.000 5857 0 0 423 6279 571200660 571206516 0.000000e+00 10816.0
1 TraesCS5B01G392500 chr5B 85.340 1944 203 39 3641 5522 582107198 582105275 0.000000e+00 1936.0
2 TraesCS5B01G392500 chr5B 85.303 1041 123 15 2625 3641 582108292 582107258 0.000000e+00 1048.0
3 TraesCS5B01G392500 chr5B 87.137 723 62 17 423 1127 582117904 582117195 0.000000e+00 791.0
4 TraesCS5B01G392500 chr5B 90.505 495 41 3 5558 6046 57710647 57710153 0.000000e+00 649.0
5 TraesCS5B01G392500 chr5B 86.400 125 11 6 6135 6259 680087957 680087839 1.420000e-26 132.0
6 TraesCS5B01G392500 chr5B 100.000 49 0 0 1 49 571200238 571200286 2.410000e-14 91.6
7 TraesCS5B01G392500 chr5D 93.226 5152 271 39 423 5524 464105059 464110182 0.000000e+00 7509.0
8 TraesCS5B01G392500 chr5D 87.588 4987 480 66 423 5323 474823274 474818341 0.000000e+00 5651.0
9 TraesCS5B01G392500 chr5D 91.682 529 39 2 5523 6046 464123069 464123597 0.000000e+00 728.0
10 TraesCS5B01G392500 chr5D 78.799 849 130 35 3722 4552 464114707 464115523 5.580000e-145 525.0
11 TraesCS5B01G392500 chr5D 95.918 49 1 1 6081 6128 464123611 464123659 1.880000e-10 78.7
12 TraesCS5B01G392500 chr5D 97.619 42 1 0 8 49 464104904 464104945 8.730000e-09 73.1
13 TraesCS5B01G392500 chr7B 86.553 4291 444 63 1311 5523 626566820 626562585 0.000000e+00 4604.0
14 TraesCS5B01G392500 chr7B 85.469 874 89 17 425 1277 626567677 626566821 0.000000e+00 876.0
15 TraesCS5B01G392500 chr7B 94.118 153 4 4 6128 6279 581218134 581218282 1.760000e-55 228.0
16 TraesCS5B01G392500 chr7B 76.744 387 83 7 5748 6131 165535965 165535583 6.380000e-50 209.0
17 TraesCS5B01G392500 chr5A 91.138 3216 216 26 423 3620 584548100 584551264 0.000000e+00 4296.0
18 TraesCS5B01G392500 chr5A 91.561 1884 139 9 3653 5524 584551348 584553223 0.000000e+00 2580.0
19 TraesCS5B01G392500 chr5A 91.694 614 44 6 5523 6131 584590799 584591410 0.000000e+00 845.0
20 TraesCS5B01G392500 chr5A 91.445 526 40 2 5526 6046 43574817 43574292 0.000000e+00 717.0
21 TraesCS5B01G392500 chr5A 78.192 885 138 33 3689 4552 43742573 43741723 1.210000e-141 514.0
22 TraesCS5B01G392500 chr5A 92.517 147 7 3 6134 6279 43263504 43263361 2.290000e-49 207.0
23 TraesCS5B01G392500 chr5A 75.644 427 98 6 5712 6135 119866557 119866980 2.290000e-49 207.0
24 TraesCS5B01G392500 chr2A 82.025 4829 636 122 426 5160 692359415 692354725 0.000000e+00 3895.0
25 TraesCS5B01G392500 chr2A 82.807 4025 517 99 426 4402 692273462 692269565 0.000000e+00 3437.0
26 TraesCS5B01G392500 chr2A 80.722 2936 412 79 1972 4850 692328250 692325412 0.000000e+00 2145.0
27 TraesCS5B01G392500 chr2A 84.839 1682 183 41 555 2205 715437452 715435812 0.000000e+00 1628.0
28 TraesCS5B01G392500 chr2A 82.314 605 80 17 3984 4577 715422439 715421851 3.380000e-137 499.0
29 TraesCS5B01G392500 chr2A 78.824 170 26 7 5529 5693 728642371 728642207 8.610000e-19 106.0
30 TraesCS5B01G392500 chr7A 85.436 3179 324 55 2412 5524 660081004 660084109 0.000000e+00 3177.0
31 TraesCS5B01G392500 chr7A 88.008 2018 176 33 425 2413 660068082 660070062 0.000000e+00 2326.0
32 TraesCS5B01G392500 chr2D 86.131 2949 328 46 426 3337 551823625 551820721 0.000000e+00 3105.0
33 TraesCS5B01G392500 chr2D 83.658 1181 123 42 423 1583 577756166 577757296 0.000000e+00 1048.0
34 TraesCS5B01G392500 chr2D 79.757 1072 144 41 3349 4402 551809445 551808429 0.000000e+00 710.0
35 TraesCS5B01G392500 chr2D 82.178 606 81 17 3984 4578 577342133 577341544 4.370000e-136 496.0
36 TraesCS5B01G392500 chr2D 81.818 440 53 11 4725 5160 551826585 551826169 1.680000e-90 344.0
37 TraesCS5B01G392500 chr2D 84.494 316 39 5 4400 4705 551716323 551716008 2.840000e-78 303.0
38 TraesCS5B01G392500 chr2D 81.208 298 32 13 5203 5479 551706036 551705742 1.060000e-52 219.0
39 TraesCS5B01G392500 chr2D 78.035 173 22 12 5529 5693 593854164 593854000 1.860000e-15 95.3
40 TraesCS5B01G392500 chr2B 84.351 1802 205 47 426 2205 694486847 694485101 0.000000e+00 1694.0
41 TraesCS5B01G392500 chr2B 85.034 1617 192 33 607 2198 722379782 722378191 0.000000e+00 1600.0
42 TraesCS5B01G392500 chr2B 82.363 601 79 17 3984 4573 694420844 694420260 1.220000e-136 497.0
43 TraesCS5B01G392500 chr2B 82.383 596 78 17 3989 4573 694472894 694472315 1.570000e-135 494.0
44 TraesCS5B01G392500 chr2B 93.056 144 6 3 6136 6279 5800086 5800225 2.290000e-49 207.0
45 TraesCS5B01G392500 chr2B 79.476 229 22 16 5298 5523 694477562 694477356 8.490000e-29 139.0
46 TraesCS5B01G392500 chr2B 78.970 233 23 17 5298 5526 694425902 694425692 1.100000e-27 135.0
47 TraesCS5B01G392500 chr2B 85.714 56 8 0 5526 5581 89169491 89169436 6.800000e-05 60.2
48 TraesCS5B01G392500 chr7D 87.201 1461 136 25 3711 5131 570988183 570989632 0.000000e+00 1615.0
49 TraesCS5B01G392500 chr7D 86.210 1095 135 7 2627 3715 570978339 570979423 0.000000e+00 1171.0
50 TraesCS5B01G392500 chr7D 87.654 405 28 12 5137 5523 570992329 570992729 9.600000e-123 451.0
51 TraesCS5B01G392500 chr3B 81.389 360 57 8 5775 6129 564171574 564171220 1.030000e-72 285.0
52 TraesCS5B01G392500 chr3B 77.123 424 91 6 5711 6131 524947709 524947289 2.260000e-59 241.0
53 TraesCS5B01G392500 chr3B 86.441 118 15 1 6134 6251 757732732 757732616 1.840000e-25 128.0
54 TraesCS5B01G392500 chr3B 84.091 132 13 7 6128 6259 680241489 680241612 3.070000e-23 121.0
55 TraesCS5B01G392500 chr3B 83.871 62 8 2 5523 5584 339788166 339788225 2.440000e-04 58.4
56 TraesCS5B01G392500 chr3B 84.483 58 9 0 5526 5583 624454953 624454896 2.440000e-04 58.4
57 TraesCS5B01G392500 chr6B 93.750 144 5 2 6136 6279 49348142 49348281 4.930000e-51 213.0
58 TraesCS5B01G392500 chr6B 85.965 57 8 0 5523 5579 419661230 419661174 1.890000e-05 62.1
59 TraesCS5B01G392500 chr1B 76.667 390 76 11 5748 6129 194907089 194907471 1.070000e-47 202.0
60 TraesCS5B01G392500 chr6D 82.081 173 20 11 5526 5693 272759138 272758972 3.050000e-28 137.0
61 TraesCS5B01G392500 chr4B 86.066 122 15 2 6131 6252 22087197 22087316 5.110000e-26 130.0
62 TraesCS5B01G392500 chr4B 86.325 117 15 1 6135 6251 11634068 11634183 6.610000e-25 126.0
63 TraesCS5B01G392500 chrUn 88.679 53 6 0 5523 5575 7251799 7251851 1.460000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G392500 chr5B 571200238 571206516 6278 False 5453.80 10816 100.0000 1 6279 2 chr5B.!!$F1 6278
1 TraesCS5B01G392500 chr5B 582105275 582108292 3017 True 1492.00 1936 85.3215 2625 5522 2 chr5B.!!$R4 2897
2 TraesCS5B01G392500 chr5B 582117195 582117904 709 True 791.00 791 87.1370 423 1127 1 chr5B.!!$R2 704
3 TraesCS5B01G392500 chr5D 474818341 474823274 4933 True 5651.00 5651 87.5880 423 5323 1 chr5D.!!$R1 4900
4 TraesCS5B01G392500 chr5D 464104904 464110182 5278 False 3791.05 7509 95.4225 8 5524 2 chr5D.!!$F2 5516
5 TraesCS5B01G392500 chr5D 464114707 464115523 816 False 525.00 525 78.7990 3722 4552 1 chr5D.!!$F1 830
6 TraesCS5B01G392500 chr5D 464123069 464123659 590 False 403.35 728 93.8000 5523 6128 2 chr5D.!!$F3 605
7 TraesCS5B01G392500 chr7B 626562585 626567677 5092 True 2740.00 4604 86.0110 425 5523 2 chr7B.!!$R2 5098
8 TraesCS5B01G392500 chr5A 584548100 584553223 5123 False 3438.00 4296 91.3495 423 5524 2 chr5A.!!$F3 5101
9 TraesCS5B01G392500 chr5A 584590799 584591410 611 False 845.00 845 91.6940 5523 6131 1 chr5A.!!$F2 608
10 TraesCS5B01G392500 chr5A 43574292 43574817 525 True 717.00 717 91.4450 5526 6046 1 chr5A.!!$R2 520
11 TraesCS5B01G392500 chr5A 43741723 43742573 850 True 514.00 514 78.1920 3689 4552 1 chr5A.!!$R3 863
12 TraesCS5B01G392500 chr2A 692354725 692359415 4690 True 3895.00 3895 82.0250 426 5160 1 chr2A.!!$R3 4734
13 TraesCS5B01G392500 chr2A 692269565 692273462 3897 True 3437.00 3437 82.8070 426 4402 1 chr2A.!!$R1 3976
14 TraesCS5B01G392500 chr2A 692325412 692328250 2838 True 2145.00 2145 80.7220 1972 4850 1 chr2A.!!$R2 2878
15 TraesCS5B01G392500 chr2A 715435812 715437452 1640 True 1628.00 1628 84.8390 555 2205 1 chr2A.!!$R5 1650
16 TraesCS5B01G392500 chr2A 715421851 715422439 588 True 499.00 499 82.3140 3984 4577 1 chr2A.!!$R4 593
17 TraesCS5B01G392500 chr7A 660081004 660084109 3105 False 3177.00 3177 85.4360 2412 5524 1 chr7A.!!$F2 3112
18 TraesCS5B01G392500 chr7A 660068082 660070062 1980 False 2326.00 2326 88.0080 425 2413 1 chr7A.!!$F1 1988
19 TraesCS5B01G392500 chr2D 551820721 551826585 5864 True 1724.50 3105 83.9745 426 5160 2 chr2D.!!$R6 4734
20 TraesCS5B01G392500 chr2D 577756166 577757296 1130 False 1048.00 1048 83.6580 423 1583 1 chr2D.!!$F1 1160
21 TraesCS5B01G392500 chr2D 551808429 551809445 1016 True 710.00 710 79.7570 3349 4402 1 chr2D.!!$R3 1053
22 TraesCS5B01G392500 chr2D 577341544 577342133 589 True 496.00 496 82.1780 3984 4578 1 chr2D.!!$R4 594
23 TraesCS5B01G392500 chr2B 694485101 694486847 1746 True 1694.00 1694 84.3510 426 2205 1 chr2B.!!$R6 1779
24 TraesCS5B01G392500 chr2B 722378191 722379782 1591 True 1600.00 1600 85.0340 607 2198 1 chr2B.!!$R7 1591
25 TraesCS5B01G392500 chr2B 694420260 694420844 584 True 497.00 497 82.3630 3984 4573 1 chr2B.!!$R2 589
26 TraesCS5B01G392500 chr2B 694472315 694472894 579 True 494.00 494 82.3830 3989 4573 1 chr2B.!!$R4 584
27 TraesCS5B01G392500 chr7D 570978339 570979423 1084 False 1171.00 1171 86.2100 2627 3715 1 chr7D.!!$F1 1088
28 TraesCS5B01G392500 chr7D 570988183 570992729 4546 False 1033.00 1615 87.4275 3711 5523 2 chr7D.!!$F2 1812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
449 2985 2.027653 TGGTGTTGTCATCCTCGCATTA 60.028 45.455 0.00 0.00 0.00 1.90 F
644 3187 2.674796 AGTCACGCCATACCTTTCTC 57.325 50.000 0.00 0.00 0.00 2.87 F
2054 4697 0.028902 GTTTTCTGCCGTTGCGAAGT 59.971 50.000 0.00 0.00 41.78 3.01 F
2792 5453 0.241213 TGCAGAGAACGAGGAAGACG 59.759 55.000 0.00 0.00 0.00 4.18 F
3412 6096 0.611200 AGCTAACCCGTGTGCACATA 59.389 50.000 24.69 9.89 0.00 2.29 F
4784 7756 0.320374 TAGGGTTTCACGTGGCTGAG 59.680 55.000 17.00 0.00 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1706 4334 2.644299 TCCTTCTCATGCCTTTCCTTCA 59.356 45.455 0.00 0.0 0.00 3.02 R
2500 5148 0.321122 CTGAGAACTGTGACTGCCCC 60.321 60.000 0.00 0.0 0.00 5.80 R
3809 6661 0.178301 TGGTTAAGTCCGTGCACACA 59.822 50.000 18.64 0.0 0.00 3.72 R
4512 7441 0.320050 TGTGGACGTGCAGCTTGATA 59.680 50.000 11.09 0.0 0.00 2.15 R
4886 7862 1.188863 CCAAGGGGGCTTCAATTCAG 58.811 55.000 0.00 0.0 0.00 3.02 R
6133 11832 0.666913 CGTGCACTACCCGCTAGTAT 59.333 55.000 16.19 0.0 33.53 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
449 2985 2.027653 TGGTGTTGTCATCCTCGCATTA 60.028 45.455 0.00 0.00 0.00 1.90
515 3052 4.489737 TGGAAGAAAGAACTCCACTAGGA 58.510 43.478 0.00 0.00 43.21 2.94
516 3053 5.094387 TGGAAGAAAGAACTCCACTAGGAT 58.906 41.667 0.00 0.00 44.70 3.24
628 3171 5.414454 TGTGATAACCATTGGTTTGCTAGTC 59.586 40.000 25.34 13.94 44.33 2.59
644 3187 2.674796 AGTCACGCCATACCTTTCTC 57.325 50.000 0.00 0.00 0.00 2.87
761 3313 8.967218 CATCAAGACAAAATAATGTTCGTTTGT 58.033 29.630 0.54 0.54 44.61 2.83
902 3455 5.156355 CCTCGCCAAAATATTATGCATGTC 58.844 41.667 10.16 0.00 0.00 3.06
1054 3653 9.085645 TCTGTCTGTAACAAAAGGACTCTATAA 57.914 33.333 0.00 0.00 37.45 0.98
1157 3761 9.684448 GTTTCATATGTAGATTCAGATCTCGAA 57.316 33.333 1.90 9.18 41.68 3.71
1261 3871 3.323403 GCAGAGAGAAGTACCTGCCATAT 59.677 47.826 7.97 0.00 44.39 1.78
1558 4174 8.633561 GGAAAAGAAAGGAAAATGAGAAGAAGA 58.366 33.333 0.00 0.00 0.00 2.87
1576 4192 9.829507 AGAAGAAGATTAAGTCACATATGGAAG 57.170 33.333 7.80 0.00 0.00 3.46
1591 4207 6.851836 ACATATGGAAGGAAAGGAGGAGAATA 59.148 38.462 7.80 0.00 0.00 1.75
1640 4268 6.862090 CAGCAAGAAATTGAGAAAGAGAAAGG 59.138 38.462 0.00 0.00 0.00 3.11
1681 4309 5.520748 AAATAAGCAGAAGGGAAGGAAGA 57.479 39.130 0.00 0.00 0.00 2.87
2049 4692 1.851658 ACAATGTTTTCTGCCGTTGC 58.148 45.000 0.00 0.00 32.11 4.17
2054 4697 0.028902 GTTTTCTGCCGTTGCGAAGT 59.971 50.000 0.00 0.00 41.78 3.01
2211 4856 1.224075 CTGATAGCTGGGATTGCACG 58.776 55.000 0.00 0.00 0.00 5.34
2276 4924 1.148310 CTCGACGTGTTCAGCCATTT 58.852 50.000 0.00 0.00 0.00 2.32
2413 5061 3.068873 CCGTAGAGCTGGCTAAAATCTCT 59.931 47.826 0.00 0.00 37.78 3.10
2480 5128 1.110518 TCGCATCGGGTATGGCTACA 61.111 55.000 0.00 0.00 35.99 2.74
2500 5148 2.572191 TGCTGGTATTCCGTTACGAG 57.428 50.000 6.24 0.00 36.30 4.18
2524 5172 2.992543 GCAGTCACAGTTCTCAGTGATC 59.007 50.000 0.00 0.00 45.46 2.92
2774 5435 5.784750 TGAAGACGCATTATCAGAAACTG 57.215 39.130 0.00 0.00 0.00 3.16
2782 5443 5.567552 GCATTATCAGAAACTGCAGAGAAC 58.432 41.667 23.35 8.67 33.13 3.01
2792 5453 0.241213 TGCAGAGAACGAGGAAGACG 59.759 55.000 0.00 0.00 0.00 4.18
2802 5463 1.067846 CGAGGAAGACGGTGAATGTCA 60.068 52.381 0.00 0.00 38.83 3.58
2994 5655 2.969628 AGGTCCATCTGGTGATCTAGG 58.030 52.381 0.00 0.00 36.34 3.02
3191 5875 6.801575 TGTCTATGTGCATATCGAACTGTAA 58.198 36.000 0.00 0.00 0.00 2.41
3246 5930 2.676748 AGGCTGAGGAGATAAGGTCTG 58.323 52.381 0.00 0.00 37.29 3.51
3254 5938 2.549778 GGAGATAAGGTCTGCATCTGGC 60.550 54.545 0.00 0.00 44.08 4.85
3401 6085 4.345547 AGGCTCTTGTTATCTAGCTAACCC 59.654 45.833 12.68 7.15 35.30 4.11
3412 6096 0.611200 AGCTAACCCGTGTGCACATA 59.389 50.000 24.69 9.89 0.00 2.29
3494 6179 5.050159 GCTTTGCTGGTCCTTTAATTGTTTG 60.050 40.000 0.00 0.00 0.00 2.93
3501 6186 6.130569 TGGTCCTTTAATTGTTTGTACCAGT 58.869 36.000 0.00 0.00 31.21 4.00
3514 6199 7.506114 TGTTTGTACCAGTTCTTCTAGTTCAT 58.494 34.615 0.00 0.00 0.00 2.57
3519 6204 5.983540 ACCAGTTCTTCTAGTTCATCATCC 58.016 41.667 0.00 0.00 0.00 3.51
3619 6375 7.478520 AAATGAGTAGTACTTGTTGACACAC 57.521 36.000 0.00 0.00 30.32 3.82
3620 6376 4.603985 TGAGTAGTACTTGTTGACACACG 58.396 43.478 0.00 0.00 30.32 4.49
3622 6378 1.205657 AGTACTTGTTGACACACGCG 58.794 50.000 3.53 3.53 30.32 6.01
3654 6497 8.264347 ACACACATACACATATTGGTTGAGATA 58.736 33.333 0.00 0.00 0.00 1.98
4235 7160 9.307121 TCAATTCAATTTCTTCTCTCGATAGTC 57.693 33.333 0.00 0.00 37.40 2.59
4311 7239 2.941415 GCAGATCATCCCGGACAAGTTT 60.941 50.000 0.73 0.00 0.00 2.66
4714 7678 6.544931 GGCTAATTACCGGATTAAGGAAAAGT 59.455 38.462 9.46 0.00 0.00 2.66
4774 7744 3.526019 CCCCTTCATAACCTAGGGTTTCA 59.474 47.826 14.81 0.00 44.33 2.69
4778 7750 4.196626 TCATAACCTAGGGTTTCACGTG 57.803 45.455 14.81 9.94 44.33 4.49
4784 7756 0.320374 TAGGGTTTCACGTGGCTGAG 59.680 55.000 17.00 0.00 0.00 3.35
4787 7759 1.021968 GGTTTCACGTGGCTGAGTTT 58.978 50.000 17.00 0.00 0.00 2.66
4822 7797 2.233431 CCCGGAAATCTTGCAAAATCCA 59.767 45.455 0.73 0.00 0.00 3.41
4838 7813 4.218578 CATCGAGCCGCTGCCTCT 62.219 66.667 0.00 0.00 38.69 3.69
4860 7836 2.298729 ACAACCAACCATTTGAATCGGG 59.701 45.455 0.00 0.00 34.24 5.14
4871 7847 3.543680 TTGAATCGGGTGGATCTCTTC 57.456 47.619 0.00 0.00 33.02 2.87
4886 7862 3.340034 TCTCTTCTCTCGTCCTCTTGTC 58.660 50.000 0.00 0.00 0.00 3.18
4892 7868 4.082845 TCTCTCGTCCTCTTGTCTGAATT 58.917 43.478 0.00 0.00 0.00 2.17
4934 7917 6.371825 GGTCGTCTGAACTTTAAAGATCCATT 59.628 38.462 21.92 5.00 0.00 3.16
5023 8007 3.781079 TGAATCTTTAGCCCATTTGCG 57.219 42.857 0.00 0.00 36.02 4.85
5048 8032 7.009174 CGCCATTATGGTTTTCAATCAACTTAC 59.991 37.037 13.28 0.00 40.46 2.34
5084 8068 2.231964 TCCATGGTGCATCTTGCTTTTC 59.768 45.455 12.58 0.00 45.31 2.29
5131 10806 2.094182 TGCGTCCATGTTCCTAGTTCTC 60.094 50.000 0.00 0.00 0.00 2.87
5175 10850 6.488006 GCATAGATCAACTTGTGGGATGTAAT 59.512 38.462 0.00 0.00 0.00 1.89
5201 10876 3.378427 AGGTTTCAGCAAGTTGACAAGAC 59.622 43.478 7.16 0.00 0.00 3.01
5240 10915 3.073798 TGATTTTGTGGGCCTCTTAGACA 59.926 43.478 4.53 0.00 0.00 3.41
5263 10938 9.988350 GACACTTGTTATATTCCTAATGTTGTG 57.012 33.333 0.00 0.00 0.00 3.33
5327 11010 7.293073 ACCTTTTCTGCAATGATAGTCCATAT 58.707 34.615 0.00 0.00 0.00 1.78
5391 11078 7.230849 AGACAAGGTGCAAATTTGAATCATA 57.769 32.000 22.31 0.00 0.00 2.15
5442 11134 7.360269 GCATGTTTCATGGTTTACTGAATTTGG 60.360 37.037 10.96 0.00 31.83 3.28
5444 11136 7.961351 TGTTTCATGGTTTACTGAATTTGGAT 58.039 30.769 0.00 0.00 31.83 3.41
5584 11277 2.805295 CGGTGTACCTTGCTTTCTGTCA 60.805 50.000 0.00 0.00 0.00 3.58
5779 11476 1.652947 GAGTAGACCCCCTTGTTCCA 58.347 55.000 0.00 0.00 0.00 3.53
5943 11641 9.019656 TGAGGCATATTATTGTTGTTGTAAAGT 57.980 29.630 0.00 0.00 0.00 2.66
5995 11693 1.838112 AAATCCTCAATTCTGCGCCA 58.162 45.000 4.18 0.00 0.00 5.69
6021 11719 8.408043 TTGCAATTGATAGGGGAATAACATAG 57.592 34.615 10.34 0.00 0.00 2.23
6034 11732 6.759827 GGGAATAACATAGAACACTTAGCGAA 59.240 38.462 0.00 0.00 0.00 4.70
6068 11766 7.011109 CCACATGGAAACTCTTAATTACCGTAG 59.989 40.741 0.00 0.00 37.39 3.51
6072 11770 7.318141 TGGAAACTCTTAATTACCGTAGTGAG 58.682 38.462 0.00 0.00 0.00 3.51
6078 11776 3.515330 AATTACCGTAGTGAGAACCGG 57.485 47.619 0.00 0.00 45.72 5.28
6122 11821 2.034939 CGTGTGTGGTACAAGTCTACCA 59.965 50.000 0.00 0.00 44.16 3.25
6144 11843 4.368565 TGAGTAGATCATACTAGCGGGT 57.631 45.455 0.00 0.00 31.12 5.28
6145 11844 5.494390 TGAGTAGATCATACTAGCGGGTA 57.506 43.478 0.00 0.00 31.12 3.69
6146 11845 5.489249 TGAGTAGATCATACTAGCGGGTAG 58.511 45.833 12.42 12.42 31.12 3.18
6147 11846 5.012871 TGAGTAGATCATACTAGCGGGTAGT 59.987 44.000 21.95 21.95 38.15 2.73
6148 11847 5.247084 AGTAGATCATACTAGCGGGTAGTG 58.753 45.833 25.63 12.89 42.37 2.74
6149 11848 2.820787 AGATCATACTAGCGGGTAGTGC 59.179 50.000 25.63 11.98 42.37 4.40
6150 11849 2.061509 TCATACTAGCGGGTAGTGCA 57.938 50.000 25.63 10.60 42.37 4.57
6151 11850 1.679680 TCATACTAGCGGGTAGTGCAC 59.320 52.381 25.63 9.40 42.37 4.57
6153 11852 1.378882 TACTAGCGGGTAGTGCACGG 61.379 60.000 25.63 0.91 45.70 4.94
6154 11853 4.137872 TAGCGGGTAGTGCACGGC 62.138 66.667 12.01 11.05 45.70 5.68
6177 11876 4.830765 GCCGCGCCACATGGACTA 62.831 66.667 0.00 0.00 37.39 2.59
6178 11877 2.125310 CCGCGCCACATGGACTAA 60.125 61.111 0.00 0.00 37.39 2.24
6179 11878 1.523711 CCGCGCCACATGGACTAAT 60.524 57.895 0.00 0.00 37.39 1.73
6180 11879 1.095228 CCGCGCCACATGGACTAATT 61.095 55.000 0.00 0.00 37.39 1.40
6181 11880 1.577468 CGCGCCACATGGACTAATTA 58.423 50.000 0.00 0.00 37.39 1.40
6182 11881 1.526887 CGCGCCACATGGACTAATTAG 59.473 52.381 11.05 11.05 37.39 1.73
6183 11882 1.264288 GCGCCACATGGACTAATTAGC 59.736 52.381 12.54 5.50 37.39 3.09
6184 11883 2.838736 CGCCACATGGACTAATTAGCT 58.161 47.619 12.54 0.00 37.39 3.32
6185 11884 3.802329 GCGCCACATGGACTAATTAGCTA 60.802 47.826 12.54 4.18 37.39 3.32
6186 11885 4.569943 CGCCACATGGACTAATTAGCTAT 58.430 43.478 12.54 6.23 37.39 2.97
6187 11886 4.997395 CGCCACATGGACTAATTAGCTATT 59.003 41.667 12.54 0.00 37.39 1.73
6188 11887 5.470098 CGCCACATGGACTAATTAGCTATTT 59.530 40.000 12.54 6.17 37.39 1.40
6189 11888 6.017109 CGCCACATGGACTAATTAGCTATTTT 60.017 38.462 12.54 1.07 37.39 1.82
6190 11889 7.141363 GCCACATGGACTAATTAGCTATTTTG 58.859 38.462 12.54 7.13 37.39 2.44
6191 11890 7.651808 CCACATGGACTAATTAGCTATTTTGG 58.348 38.462 12.54 11.95 37.39 3.28
6192 11891 7.285401 CCACATGGACTAATTAGCTATTTTGGT 59.715 37.037 12.54 6.03 37.39 3.67
6193 11892 8.345565 CACATGGACTAATTAGCTATTTTGGTC 58.654 37.037 12.54 17.84 0.00 4.02
6194 11893 8.275040 ACATGGACTAATTAGCTATTTTGGTCT 58.725 33.333 21.88 9.54 0.00 3.85
6195 11894 9.125026 CATGGACTAATTAGCTATTTTGGTCTT 57.875 33.333 21.88 13.32 0.00 3.01
6196 11895 9.700831 ATGGACTAATTAGCTATTTTGGTCTTT 57.299 29.630 21.88 13.10 0.00 2.52
6197 11896 9.528489 TGGACTAATTAGCTATTTTGGTCTTTT 57.472 29.630 21.88 2.61 0.00 2.27
6225 11924 9.513906 TTAATATTTGATGAAGTGGTCACAAGA 57.486 29.630 3.82 0.00 39.72 3.02
6226 11925 8.585471 AATATTTGATGAAGTGGTCACAAGAT 57.415 30.769 3.82 0.00 39.72 2.40
6227 11926 9.685276 AATATTTGATGAAGTGGTCACAAGATA 57.315 29.630 3.82 0.00 39.72 1.98
6228 11927 9.857656 ATATTTGATGAAGTGGTCACAAGATAT 57.142 29.630 3.82 0.00 39.72 1.63
6229 11928 8.585471 ATTTGATGAAGTGGTCACAAGATATT 57.415 30.769 3.82 0.00 39.72 1.28
6230 11929 8.408043 TTTGATGAAGTGGTCACAAGATATTT 57.592 30.769 3.82 0.00 39.72 1.40
6231 11930 8.408043 TTGATGAAGTGGTCACAAGATATTTT 57.592 30.769 3.82 0.00 39.72 1.82
6232 11931 8.408043 TGATGAAGTGGTCACAAGATATTTTT 57.592 30.769 3.82 0.00 39.72 1.94
6255 11954 6.701145 TTTTGGCAAAGTAGTTCATGTACA 57.299 33.333 13.04 0.00 0.00 2.90
6256 11955 6.892658 TTTGGCAAAGTAGTTCATGTACAT 57.107 33.333 8.93 1.41 0.00 2.29
6257 11956 6.892658 TTGGCAAAGTAGTTCATGTACATT 57.107 33.333 5.37 0.00 0.00 2.71
6258 11957 6.892658 TGGCAAAGTAGTTCATGTACATTT 57.107 33.333 5.37 0.00 0.00 2.32
6259 11958 7.987750 TGGCAAAGTAGTTCATGTACATTTA 57.012 32.000 5.37 0.00 0.00 1.40
6260 11959 8.039603 TGGCAAAGTAGTTCATGTACATTTAG 57.960 34.615 5.37 0.00 0.00 1.85
6261 11960 7.663905 TGGCAAAGTAGTTCATGTACATTTAGT 59.336 33.333 5.37 2.78 0.00 2.24
6262 11961 8.512138 GGCAAAGTAGTTCATGTACATTTAGTT 58.488 33.333 5.37 3.67 0.00 2.24
6263 11962 9.329913 GCAAAGTAGTTCATGTACATTTAGTTG 57.670 33.333 5.37 4.46 0.00 3.16
6264 11963 9.825972 CAAAGTAGTTCATGTACATTTAGTTGG 57.174 33.333 5.37 0.87 0.00 3.77
6265 11964 8.561738 AAGTAGTTCATGTACATTTAGTTGGG 57.438 34.615 5.37 0.00 0.00 4.12
6266 11965 7.686434 AGTAGTTCATGTACATTTAGTTGGGT 58.314 34.615 5.37 0.00 0.00 4.51
6267 11966 6.817765 AGTTCATGTACATTTAGTTGGGTG 57.182 37.500 5.37 0.00 0.00 4.61
6268 11967 6.539173 AGTTCATGTACATTTAGTTGGGTGA 58.461 36.000 5.37 0.00 0.00 4.02
6269 11968 7.175104 AGTTCATGTACATTTAGTTGGGTGAT 58.825 34.615 5.37 0.00 0.00 3.06
6270 11969 7.336931 AGTTCATGTACATTTAGTTGGGTGATC 59.663 37.037 5.37 0.00 0.00 2.92
6271 11970 5.815222 TCATGTACATTTAGTTGGGTGATCG 59.185 40.000 5.37 0.00 0.00 3.69
6272 11971 5.155278 TGTACATTTAGTTGGGTGATCGT 57.845 39.130 0.00 0.00 0.00 3.73
6273 11972 4.932799 TGTACATTTAGTTGGGTGATCGTG 59.067 41.667 0.00 0.00 0.00 4.35
6274 11973 4.280436 ACATTTAGTTGGGTGATCGTGA 57.720 40.909 0.00 0.00 0.00 4.35
6275 11974 4.000988 ACATTTAGTTGGGTGATCGTGAC 58.999 43.478 0.00 0.00 0.00 3.67
6276 11975 3.755112 TTTAGTTGGGTGATCGTGACA 57.245 42.857 0.00 0.00 0.00 3.58
6277 11976 3.755112 TTAGTTGGGTGATCGTGACAA 57.245 42.857 0.00 0.00 0.00 3.18
6278 11977 2.631160 AGTTGGGTGATCGTGACAAA 57.369 45.000 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
449 2985 3.903090 TCTTCCAACATGGCCAAATTTCT 59.097 39.130 10.96 0.00 37.47 2.52
602 3145 4.881920 AGCAAACCAATGGTTATCACAAC 58.118 39.130 19.06 3.33 46.20 3.32
628 3171 1.135083 AGACGAGAAAGGTATGGCGTG 60.135 52.381 0.00 0.00 31.58 5.34
770 3322 5.140454 GTGCTCCCCATGTTTATCCTTTAT 58.860 41.667 0.00 0.00 0.00 1.40
902 3455 7.511959 TGCTAGGAATATATATAGAGTGGCG 57.488 40.000 0.00 0.00 0.00 5.69
1029 3609 9.360093 CTTATAGAGTCCTTTTGTTACAGACAG 57.640 37.037 5.50 0.00 39.94 3.51
1157 3761 7.559533 TGGCATATAATACCACACAAGTTTCAT 59.440 33.333 0.00 0.00 0.00 2.57
1261 3871 4.020039 ACGTACCATGATTGGACCTTTACA 60.020 41.667 0.00 0.00 46.92 2.41
1558 4174 7.872138 TCCTTTCCTTCCATATGTGACTTAAT 58.128 34.615 1.24 0.00 0.00 1.40
1560 4176 6.126768 CCTCCTTTCCTTCCATATGTGACTTA 60.127 42.308 1.24 0.00 0.00 2.24
1576 4192 7.130681 TCTCATTCTTATTCTCCTCCTTTCC 57.869 40.000 0.00 0.00 0.00 3.13
1591 4207 5.242615 GCCCTTGTTCTTCTTTCTCATTCTT 59.757 40.000 0.00 0.00 0.00 2.52
1640 4268 8.616942 GCTTATTTATCTCCTTTTGTTCCTCTC 58.383 37.037 0.00 0.00 0.00 3.20
1706 4334 2.644299 TCCTTCTCATGCCTTTCCTTCA 59.356 45.455 0.00 0.00 0.00 3.02
2211 4856 5.188327 GCATTTAACCTTGCCTTCCTATC 57.812 43.478 0.00 0.00 32.66 2.08
2292 4940 5.068198 GGAATGGTCTGCAACATATGTCATT 59.932 40.000 9.23 11.92 0.00 2.57
2480 5128 2.223971 CCTCGTAACGGAATACCAGCAT 60.224 50.000 0.00 0.00 35.59 3.79
2500 5148 0.321122 CTGAGAACTGTGACTGCCCC 60.321 60.000 0.00 0.00 0.00 5.80
2524 5172 2.733227 GCAGGACGATGGCAAGAAAATG 60.733 50.000 0.00 0.00 0.00 2.32
2587 5235 2.596338 TCTCCAGCCACGTCGACA 60.596 61.111 17.16 0.00 0.00 4.35
2774 5435 0.456995 CCGTCTTCCTCGTTCTCTGC 60.457 60.000 0.00 0.00 0.00 4.26
2782 5443 1.067846 TGACATTCACCGTCTTCCTCG 60.068 52.381 0.00 0.00 34.37 4.63
2792 5453 1.401931 GCTGCACATGTGACATTCACC 60.402 52.381 29.80 9.32 46.40 4.02
2802 5463 2.743752 GCATCGTCGCTGCACATGT 61.744 57.895 15.73 0.00 39.46 3.21
2994 5655 1.452833 GATGCTGCTCCCCCAGAAC 60.453 63.158 0.00 0.00 34.77 3.01
3191 5875 1.067821 GGACGATGCTCCGATTCTTCT 59.932 52.381 5.39 0.00 0.00 2.85
3246 5930 0.659957 GAAGGTGAATCGCCAGATGC 59.340 55.000 15.92 0.00 37.14 3.91
3284 5968 5.698832 TCTGAATTACCTGCAAAATTGTCG 58.301 37.500 6.17 0.00 0.00 4.35
3359 6043 4.637534 AGCCTATGAATCATGTGACAACAC 59.362 41.667 5.91 0.00 46.09 3.32
3401 6085 3.120373 TGCTTACAATGTATGTGCACACG 60.120 43.478 24.37 9.02 43.77 4.49
3412 6096 4.067896 CTGTCCAACTCTGCTTACAATGT 58.932 43.478 0.00 0.00 0.00 2.71
3494 6179 6.981559 GGATGATGAACTAGAAGAACTGGTAC 59.018 42.308 0.00 0.00 39.36 3.34
3501 6186 8.378565 ACTCTTTTGGATGATGAACTAGAAGAA 58.621 33.333 0.00 0.00 0.00 2.52
3509 6194 4.158579 GGGGAACTCTTTTGGATGATGAAC 59.841 45.833 0.00 0.00 0.00 3.18
3514 6199 2.986019 TGAGGGGAACTCTTTTGGATGA 59.014 45.455 0.00 0.00 46.72 2.92
3622 6378 2.202171 GTGTATGTGTGTGCGCGC 60.202 61.111 27.26 27.26 0.00 6.86
3626 6404 4.963276 ACCAATATGTGTATGTGTGTGC 57.037 40.909 0.00 0.00 0.00 4.57
3654 6497 4.428209 CTCGATGACACAACATCTAAGCT 58.572 43.478 0.00 0.00 42.86 3.74
3731 6583 8.207521 CTCGATGACAAGAGCATATAGATAGA 57.792 38.462 0.00 0.00 0.00 1.98
3809 6661 0.178301 TGGTTAAGTCCGTGCACACA 59.822 50.000 18.64 0.00 0.00 3.72
4235 7160 5.172591 GCAATGCAGATTTGAATGTGTATCG 59.827 40.000 0.00 0.00 34.74 2.92
4238 7163 5.183522 TGAGCAATGCAGATTTGAATGTGTA 59.816 36.000 8.35 0.00 32.69 2.90
4242 7169 4.562789 CAGTGAGCAATGCAGATTTGAATG 59.437 41.667 8.35 0.00 0.00 2.67
4246 7174 3.190744 AGTCAGTGAGCAATGCAGATTTG 59.809 43.478 8.35 0.00 0.00 2.32
4311 7239 3.320610 TTGGGGAGGAATGTTTTCACA 57.679 42.857 0.00 0.00 37.31 3.58
4512 7441 0.320050 TGTGGACGTGCAGCTTGATA 59.680 50.000 11.09 0.00 0.00 2.15
4540 7469 2.040012 GGATGCAGGGAGTGATCATCAT 59.960 50.000 0.00 0.00 36.25 2.45
4588 7519 7.351981 TCAAAACGCCTATGAATGAATTATCG 58.648 34.615 0.00 0.00 0.00 2.92
4714 7678 9.601217 GAGAAGAAAGGAAAGTATACATGCTAA 57.399 33.333 5.50 0.00 0.00 3.09
4774 7744 2.922740 TAAAGGAAACTCAGCCACGT 57.077 45.000 0.00 0.00 42.68 4.49
4778 7750 7.333672 CGGGTTATATATAAAGGAAACTCAGCC 59.666 40.741 6.75 0.30 42.68 4.85
4787 7759 9.953565 CAAGATTTCCGGGTTATATATAAAGGA 57.046 33.333 15.86 15.86 0.00 3.36
4836 7811 4.457603 CCGATTCAAATGGTTGGTTGTAGA 59.542 41.667 0.00 0.00 35.29 2.59
4838 7813 3.508012 CCCGATTCAAATGGTTGGTTGTA 59.492 43.478 0.00 0.00 35.29 2.41
4860 7836 2.616842 GAGGACGAGAGAAGAGATCCAC 59.383 54.545 0.00 0.00 0.00 4.02
4871 7847 4.082517 TCAATTCAGACAAGAGGACGAGAG 60.083 45.833 0.00 0.00 0.00 3.20
4886 7862 1.188863 CCAAGGGGGCTTCAATTCAG 58.811 55.000 0.00 0.00 0.00 3.02
4934 7917 5.461526 CGTAGTGAAACAACTGAGATCTGA 58.538 41.667 0.00 0.00 41.43 3.27
4944 7927 4.769215 CTTACCAAGCGTAGTGAAACAAC 58.231 43.478 0.00 0.00 41.43 3.32
5023 8007 7.009174 CGTAAGTTGATTGAAAACCATAATGGC 59.991 37.037 0.00 0.00 42.67 4.40
5048 8032 6.818142 TGCACCATGGATTATGTATAGAATCG 59.182 38.462 21.47 0.00 35.79 3.34
5084 8068 1.347707 TCTTGTGGTGGGAAGCAGTAG 59.652 52.381 0.00 0.00 0.00 2.57
5112 8096 2.479730 CGGAGAACTAGGAACATGGACG 60.480 54.545 0.00 0.00 0.00 4.79
5113 8097 2.496470 ACGGAGAACTAGGAACATGGAC 59.504 50.000 0.00 0.00 0.00 4.02
5131 10806 2.285756 TGCTGAACTAAAACGTTCACGG 59.714 45.455 0.00 0.00 45.92 4.94
5175 10850 4.776349 TGTCAACTTGCTGAAACCTCTAA 58.224 39.130 0.00 0.00 0.00 2.10
5201 10876 8.449397 CACAAAATCAGAAGAAGGATAAGTCAG 58.551 37.037 0.00 0.00 0.00 3.51
5327 11010 4.407621 TGGCCTAATAACTAGCTAGCAACA 59.592 41.667 20.91 3.76 0.00 3.33
5403 11090 6.756074 CCATGAAACATGCATATACGGTTTTT 59.244 34.615 11.92 3.17 32.32 1.94
5407 11099 4.460263 ACCATGAAACATGCATATACGGT 58.540 39.130 0.00 0.00 0.00 4.83
5779 11476 3.793827 ACCAAAGTTCATCCATATCCCCT 59.206 43.478 0.00 0.00 0.00 4.79
5831 11529 6.639686 CCAAACATTCAACAGAGAAACTCATG 59.360 38.462 0.00 0.00 32.06 3.07
5914 11612 7.643569 ACAACAACAATAATATGCCTCATGA 57.356 32.000 0.00 0.00 0.00 3.07
5917 11615 9.019656 ACTTTACAACAACAATAATATGCCTCA 57.980 29.630 0.00 0.00 0.00 3.86
5943 11641 9.667107 CACCTTGAATTACCTAGACATCTTAAA 57.333 33.333 0.00 0.00 0.00 1.52
5964 11662 8.526147 CAGAATTGAGGATTTTATTGTCACCTT 58.474 33.333 0.00 0.00 0.00 3.50
5995 11693 7.860649 ATGTTATTCCCCTATCAATTGCAAT 57.139 32.000 5.99 5.99 0.00 3.56
6034 11732 1.064463 AGTTTCCATGTGGATGCGGAT 60.064 47.619 1.98 0.00 44.98 4.18
6046 11744 7.844009 TCACTACGGTAATTAAGAGTTTCCAT 58.156 34.615 0.00 0.00 0.00 3.41
6047 11745 7.177216 TCTCACTACGGTAATTAAGAGTTTCCA 59.823 37.037 0.00 0.00 0.00 3.53
6048 11746 7.542025 TCTCACTACGGTAATTAAGAGTTTCC 58.458 38.462 0.00 0.00 0.00 3.13
6054 11752 5.163622 CCGGTTCTCACTACGGTAATTAAGA 60.164 44.000 0.00 0.00 41.34 2.10
6078 11776 0.878961 CTACCATAGTTTCCCCGCGC 60.879 60.000 0.00 0.00 0.00 6.86
6122 11821 4.924625 ACCCGCTAGTATGATCTACTCAT 58.075 43.478 7.77 0.00 46.49 2.90
6131 11830 1.679680 GTGCACTACCCGCTAGTATGA 59.320 52.381 10.32 0.00 33.53 2.15
6132 11831 1.599667 CGTGCACTACCCGCTAGTATG 60.600 57.143 16.19 0.00 33.53 2.39
6133 11832 0.666913 CGTGCACTACCCGCTAGTAT 59.333 55.000 16.19 0.00 33.53 2.12
6134 11833 1.378882 CCGTGCACTACCCGCTAGTA 61.379 60.000 16.19 0.00 33.53 1.82
6135 11834 2.707849 CCGTGCACTACCCGCTAGT 61.708 63.158 16.19 0.00 35.94 2.57
6136 11835 2.104331 CCGTGCACTACCCGCTAG 59.896 66.667 16.19 0.00 0.00 3.42
6137 11836 4.137872 GCCGTGCACTACCCGCTA 62.138 66.667 16.19 0.00 0.00 4.26
6160 11859 4.830765 TAGTCCATGTGGCGCGGC 62.831 66.667 27.61 27.61 34.44 6.53
6161 11860 1.095228 AATTAGTCCATGTGGCGCGG 61.095 55.000 8.83 0.00 34.44 6.46
6162 11861 1.526887 CTAATTAGTCCATGTGGCGCG 59.473 52.381 0.00 0.00 34.44 6.86
6163 11862 1.264288 GCTAATTAGTCCATGTGGCGC 59.736 52.381 13.91 0.00 34.44 6.53
6164 11863 2.838736 AGCTAATTAGTCCATGTGGCG 58.161 47.619 13.91 0.00 34.44 5.69
6165 11864 6.884280 AAATAGCTAATTAGTCCATGTGGC 57.116 37.500 13.91 0.00 34.44 5.01
6166 11865 7.285401 ACCAAAATAGCTAATTAGTCCATGTGG 59.715 37.037 13.91 15.38 0.00 4.17
6167 11866 8.225603 ACCAAAATAGCTAATTAGTCCATGTG 57.774 34.615 13.91 6.39 0.00 3.21
6168 11867 8.275040 AGACCAAAATAGCTAATTAGTCCATGT 58.725 33.333 13.91 2.41 0.00 3.21
6169 11868 8.682936 AGACCAAAATAGCTAATTAGTCCATG 57.317 34.615 13.91 6.33 0.00 3.66
6170 11869 9.700831 AAAGACCAAAATAGCTAATTAGTCCAT 57.299 29.630 13.91 2.69 0.00 3.41
6171 11870 9.528489 AAAAGACCAAAATAGCTAATTAGTCCA 57.472 29.630 13.91 0.44 0.00 4.02
6199 11898 9.513906 TCTTGTGACCACTTCATCAAATATTAA 57.486 29.630 1.62 0.00 36.32 1.40
6200 11899 9.685276 ATCTTGTGACCACTTCATCAAATATTA 57.315 29.630 1.62 0.00 36.32 0.98
6201 11900 8.585471 ATCTTGTGACCACTTCATCAAATATT 57.415 30.769 1.62 0.00 36.32 1.28
6202 11901 9.857656 ATATCTTGTGACCACTTCATCAAATAT 57.142 29.630 1.62 0.00 36.32 1.28
6203 11902 9.685276 AATATCTTGTGACCACTTCATCAAATA 57.315 29.630 1.62 0.00 36.32 1.40
6204 11903 8.585471 AATATCTTGTGACCACTTCATCAAAT 57.415 30.769 1.62 0.00 36.32 2.32
6205 11904 8.408043 AAATATCTTGTGACCACTTCATCAAA 57.592 30.769 1.62 0.00 36.32 2.69
6206 11905 8.408043 AAAATATCTTGTGACCACTTCATCAA 57.592 30.769 1.62 0.00 36.32 2.57
6207 11906 8.408043 AAAAATATCTTGTGACCACTTCATCA 57.592 30.769 1.62 0.00 36.32 3.07
6231 11930 7.101652 TGTACATGAACTACTTTGCCAAAAA 57.898 32.000 0.00 0.00 0.00 1.94
6232 11931 6.701145 TGTACATGAACTACTTTGCCAAAA 57.299 33.333 0.00 0.00 0.00 2.44
6233 11932 6.892658 ATGTACATGAACTACTTTGCCAAA 57.107 33.333 7.78 0.00 0.00 3.28
6234 11933 6.892658 AATGTACATGAACTACTTTGCCAA 57.107 33.333 9.63 0.00 0.00 4.52
6235 11934 6.892658 AAATGTACATGAACTACTTTGCCA 57.107 33.333 9.63 0.00 0.00 4.92
6236 11935 8.040716 ACTAAATGTACATGAACTACTTTGCC 57.959 34.615 9.63 0.00 0.00 4.52
6237 11936 9.329913 CAACTAAATGTACATGAACTACTTTGC 57.670 33.333 9.63 0.00 0.00 3.68
6238 11937 9.825972 CCAACTAAATGTACATGAACTACTTTG 57.174 33.333 9.63 1.97 0.00 2.77
6239 11938 9.010029 CCCAACTAAATGTACATGAACTACTTT 57.990 33.333 9.63 0.56 0.00 2.66
6240 11939 8.161425 ACCCAACTAAATGTACATGAACTACTT 58.839 33.333 9.63 0.43 0.00 2.24
6241 11940 7.606456 CACCCAACTAAATGTACATGAACTACT 59.394 37.037 9.63 0.00 0.00 2.57
6242 11941 7.604927 TCACCCAACTAAATGTACATGAACTAC 59.395 37.037 9.63 0.00 0.00 2.73
6243 11942 7.681679 TCACCCAACTAAATGTACATGAACTA 58.318 34.615 9.63 0.00 0.00 2.24
6244 11943 6.539173 TCACCCAACTAAATGTACATGAACT 58.461 36.000 9.63 0.00 0.00 3.01
6245 11944 6.811253 TCACCCAACTAAATGTACATGAAC 57.189 37.500 9.63 0.00 0.00 3.18
6246 11945 6.315144 CGATCACCCAACTAAATGTACATGAA 59.685 38.462 9.63 0.00 0.00 2.57
6247 11946 5.815222 CGATCACCCAACTAAATGTACATGA 59.185 40.000 9.63 0.00 0.00 3.07
6248 11947 5.584649 ACGATCACCCAACTAAATGTACATG 59.415 40.000 9.63 0.00 0.00 3.21
6249 11948 5.584649 CACGATCACCCAACTAAATGTACAT 59.415 40.000 1.41 1.41 0.00 2.29
6250 11949 4.932799 CACGATCACCCAACTAAATGTACA 59.067 41.667 0.00 0.00 0.00 2.90
6251 11950 5.063060 GTCACGATCACCCAACTAAATGTAC 59.937 44.000 0.00 0.00 0.00 2.90
6252 11951 5.172934 GTCACGATCACCCAACTAAATGTA 58.827 41.667 0.00 0.00 0.00 2.29
6253 11952 4.000988 GTCACGATCACCCAACTAAATGT 58.999 43.478 0.00 0.00 0.00 2.71
6254 11953 4.000325 TGTCACGATCACCCAACTAAATG 59.000 43.478 0.00 0.00 0.00 2.32
6255 11954 4.280436 TGTCACGATCACCCAACTAAAT 57.720 40.909 0.00 0.00 0.00 1.40
6256 11955 3.755112 TGTCACGATCACCCAACTAAA 57.245 42.857 0.00 0.00 0.00 1.85
6257 11956 3.755112 TTGTCACGATCACCCAACTAA 57.245 42.857 0.00 0.00 0.00 2.24
6258 11957 3.755112 TTTGTCACGATCACCCAACTA 57.245 42.857 0.00 0.00 0.00 2.24
6259 11958 2.631160 TTTGTCACGATCACCCAACT 57.369 45.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.