Multiple sequence alignment - TraesCS5B01G392100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G392100 chr5B 100.000 2408 0 0 1 2408 571178214 571180621 0.000000e+00 4447.0
1 TraesCS5B01G392100 chr5B 98.959 1441 15 0 1 1441 559151191 559152631 0.000000e+00 2579.0
2 TraesCS5B01G392100 chr2B 97.779 1441 31 1 1 1441 117788362 117786923 0.000000e+00 2483.0
3 TraesCS5B01G392100 chr2B 92.836 1382 97 2 1 1381 857791 859171 0.000000e+00 2002.0
4 TraesCS5B01G392100 chr2B 83.349 1087 179 2 1 1086 579965650 579966735 0.000000e+00 1003.0
5 TraesCS5B01G392100 chr2B 87.857 140 9 5 2256 2387 572790762 572790901 8.910000e-35 158.0
6 TraesCS5B01G392100 chr2B 97.059 68 2 0 2249 2316 115856373 115856440 5.440000e-22 115.0
7 TraesCS5B01G392100 chr2B 97.059 68 2 0 2249 2316 307578414 307578481 5.440000e-22 115.0
8 TraesCS5B01G392100 chr2B 96.970 66 1 1 2252 2316 707985167 707985102 2.530000e-20 110.0
9 TraesCS5B01G392100 chr7B 96.461 1441 49 2 1 1440 729146026 729144587 0.000000e+00 2377.0
10 TraesCS5B01G392100 chr7B 96.391 1441 50 2 1 1440 729078504 729077065 0.000000e+00 2372.0
11 TraesCS5B01G392100 chr7B 96.148 1324 48 2 120 1441 682924444 682925766 0.000000e+00 2159.0
12 TraesCS5B01G392100 chr7B 95.633 893 38 1 548 1440 729212990 729212099 0.000000e+00 1432.0
13 TraesCS5B01G392100 chr7B 80.468 1454 270 11 1 1446 344317981 344316534 0.000000e+00 1099.0
14 TraesCS5B01G392100 chr7B 86.420 648 84 4 796 1441 733717868 733717223 0.000000e+00 706.0
15 TraesCS5B01G392100 chr7B 94.937 79 4 0 2312 2390 619432583 619432505 9.040000e-25 124.0
16 TraesCS5B01G392100 chr6B 80.181 1438 282 3 2 1439 123721365 123722799 0.000000e+00 1074.0
17 TraesCS5B01G392100 chr6B 95.890 73 3 0 2244 2316 17498718 17498790 4.210000e-23 119.0
18 TraesCS5B01G392100 chr5A 84.467 779 89 21 1446 2200 584511806 584512576 0.000000e+00 739.0
19 TraesCS5B01G392100 chr5A 89.617 183 19 0 1778 1960 584512912 584513094 1.440000e-57 233.0
20 TraesCS5B01G392100 chr5A 83.030 165 27 1 1617 1781 584512577 584512740 5.360000e-32 148.0
21 TraesCS5B01G392100 chr4A 98.667 75 0 1 2313 2387 585399379 585399452 5.400000e-27 132.0
22 TraesCS5B01G392100 chr4A 93.243 74 5 0 2252 2325 740953034 740952961 2.530000e-20 110.0
23 TraesCS5B01G392100 chr4A 86.458 96 8 5 2223 2316 20234514 20234606 1.520000e-17 100.0
24 TraesCS5B01G392100 chr2A 96.250 80 2 1 2312 2390 729554609 729554530 1.940000e-26 130.0
25 TraesCS5B01G392100 chr2A 96.104 77 1 1 2313 2387 385446411 385446487 9.040000e-25 124.0
26 TraesCS5B01G392100 chrUn 96.154 78 2 1 2311 2387 306569246 306569323 2.510000e-25 126.0
27 TraesCS5B01G392100 chr6A 96.154 78 2 1 2313 2390 262037342 262037266 2.510000e-25 126.0
28 TraesCS5B01G392100 chr4B 97.333 75 1 1 2313 2387 530887090 530887163 2.510000e-25 126.0
29 TraesCS5B01G392100 chr4B 94.595 74 3 1 2244 2316 352158631 352158558 1.960000e-21 113.0
30 TraesCS5B01G392100 chr3A 97.297 74 2 0 2314 2387 534547554 534547627 2.510000e-25 126.0
31 TraesCS5B01G392100 chr3A 85.000 100 9 6 2220 2316 641863632 641863728 1.970000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G392100 chr5B 571178214 571180621 2407 False 4447.000000 4447 100.000000 1 2408 1 chr5B.!!$F2 2407
1 TraesCS5B01G392100 chr5B 559151191 559152631 1440 False 2579.000000 2579 98.959000 1 1441 1 chr5B.!!$F1 1440
2 TraesCS5B01G392100 chr2B 117786923 117788362 1439 True 2483.000000 2483 97.779000 1 1441 1 chr2B.!!$R1 1440
3 TraesCS5B01G392100 chr2B 857791 859171 1380 False 2002.000000 2002 92.836000 1 1381 1 chr2B.!!$F1 1380
4 TraesCS5B01G392100 chr2B 579965650 579966735 1085 False 1003.000000 1003 83.349000 1 1086 1 chr2B.!!$F5 1085
5 TraesCS5B01G392100 chr7B 729144587 729146026 1439 True 2377.000000 2377 96.461000 1 1440 1 chr7B.!!$R4 1439
6 TraesCS5B01G392100 chr7B 729077065 729078504 1439 True 2372.000000 2372 96.391000 1 1440 1 chr7B.!!$R3 1439
7 TraesCS5B01G392100 chr7B 682924444 682925766 1322 False 2159.000000 2159 96.148000 120 1441 1 chr7B.!!$F1 1321
8 TraesCS5B01G392100 chr7B 729212099 729212990 891 True 1432.000000 1432 95.633000 548 1440 1 chr7B.!!$R5 892
9 TraesCS5B01G392100 chr7B 344316534 344317981 1447 True 1099.000000 1099 80.468000 1 1446 1 chr7B.!!$R1 1445
10 TraesCS5B01G392100 chr7B 733717223 733717868 645 True 706.000000 706 86.420000 796 1441 1 chr7B.!!$R6 645
11 TraesCS5B01G392100 chr6B 123721365 123722799 1434 False 1074.000000 1074 80.181000 2 1439 1 chr6B.!!$F2 1437
12 TraesCS5B01G392100 chr5A 584511806 584513094 1288 False 373.333333 739 85.704667 1446 2200 3 chr5A.!!$F1 754

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
829 831 0.457851 CCAAAACAACCCGAGTGCAA 59.542 50.0 0.0 0.0 0.0 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1951 1958 0.036732 ATGCTTTGTGAGGAGCGGAA 59.963 50.0 0.0 0.0 41.75 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
754 756 2.240667 ACACATCATAAGCAGCCTCCTT 59.759 45.455 0.00 0.00 0.00 3.36
829 831 0.457851 CCAAAACAACCCGAGTGCAA 59.542 50.000 0.00 0.00 0.00 4.08
921 923 2.026157 GAGGCGCGATCACGATGA 59.974 61.111 12.10 0.00 42.66 2.92
1008 1010 1.153449 CGGCGCTGGAATGGTTCTA 60.153 57.895 8.83 0.00 0.00 2.10
1404 1410 9.190858 CTATGTAAGACTGATTATGCTCTTGAC 57.809 37.037 0.00 0.00 0.00 3.18
1487 1494 6.038271 GGTTGGCTATTTGTTCGATTATGACT 59.962 38.462 0.00 0.00 0.00 3.41
1491 1498 6.073548 GGCTATTTGTTCGATTATGACTGGAG 60.074 42.308 0.00 0.00 0.00 3.86
1503 1510 8.814235 CGATTATGACTGGAGTTTAAATACGTT 58.186 33.333 0.00 0.00 0.00 3.99
1505 1512 6.980051 ATGACTGGAGTTTAAATACGTTCC 57.020 37.500 0.00 0.00 0.00 3.62
1542 1549 8.192774 TCACTGAATGGAAGATAAAAATCATGC 58.807 33.333 0.00 0.00 0.00 4.06
1544 1551 6.506147 TGAATGGAAGATAAAAATCATGCCG 58.494 36.000 0.00 0.00 0.00 5.69
1545 1552 6.096705 TGAATGGAAGATAAAAATCATGCCGT 59.903 34.615 0.00 0.00 0.00 5.68
1557 1564 3.550950 TCATGCCGTTGTTATGTGTTG 57.449 42.857 0.00 0.00 0.00 3.33
1563 1570 4.036852 TGCCGTTGTTATGTGTTGATTTGA 59.963 37.500 0.00 0.00 0.00 2.69
1571 1578 9.636879 TTGTTATGTGTTGATTTGAATACATGG 57.363 29.630 0.00 0.00 37.95 3.66
1626 1633 4.521075 TGCCGATGCACTAGAAGC 57.479 55.556 0.00 0.22 44.23 3.86
1641 1648 6.347321 GCACTAGAAGCAGAAGAAAAGAGAAC 60.347 42.308 0.00 0.00 0.00 3.01
1642 1649 6.147000 CACTAGAAGCAGAAGAAAAGAGAACC 59.853 42.308 0.00 0.00 0.00 3.62
1643 1650 5.041191 AGAAGCAGAAGAAAAGAGAACCA 57.959 39.130 0.00 0.00 0.00 3.67
1644 1651 5.629125 AGAAGCAGAAGAAAAGAGAACCAT 58.371 37.500 0.00 0.00 0.00 3.55
1645 1652 6.773638 AGAAGCAGAAGAAAAGAGAACCATA 58.226 36.000 0.00 0.00 0.00 2.74
1646 1653 6.652900 AGAAGCAGAAGAAAAGAGAACCATAC 59.347 38.462 0.00 0.00 0.00 2.39
1649 1656 6.772716 AGCAGAAGAAAAGAGAACCATACAAA 59.227 34.615 0.00 0.00 0.00 2.83
1650 1657 7.449704 AGCAGAAGAAAAGAGAACCATACAAAT 59.550 33.333 0.00 0.00 0.00 2.32
1655 1662 9.860898 AAGAAAAGAGAACCATACAAATAATGC 57.139 29.630 0.00 0.00 0.00 3.56
1691 1698 1.607251 CGGTTACTGACAAGACCCACC 60.607 57.143 0.00 0.00 0.00 4.61
1692 1699 1.697982 GGTTACTGACAAGACCCACCT 59.302 52.381 0.00 0.00 0.00 4.00
1694 1701 1.348064 TACTGACAAGACCCACCTGG 58.652 55.000 0.00 0.00 41.37 4.45
1708 1715 1.258445 ACCTGGTGGCTTAGGTCGAG 61.258 60.000 0.00 0.00 43.69 4.04
1722 1729 0.669318 GTCGAGCGACCATCAAACCA 60.669 55.000 11.70 0.00 39.08 3.67
1743 1750 5.178623 ACCACACAAATATACACAGACAACG 59.821 40.000 0.00 0.00 0.00 4.10
1747 1754 3.513680 AATATACACAGACAACGCCGA 57.486 42.857 0.00 0.00 0.00 5.54
1749 1756 0.389426 ATACACAGACAACGCCGACC 60.389 55.000 0.00 0.00 0.00 4.79
1750 1757 2.424705 TACACAGACAACGCCGACCC 62.425 60.000 0.00 0.00 0.00 4.46
1751 1758 3.542676 ACAGACAACGCCGACCCA 61.543 61.111 0.00 0.00 0.00 4.51
1752 1759 2.280524 CAGACAACGCCGACCCAA 60.281 61.111 0.00 0.00 0.00 4.12
1756 1763 0.600782 GACAACGCCGACCCAACTAA 60.601 55.000 0.00 0.00 0.00 2.24
1757 1764 0.035739 ACAACGCCGACCCAACTAAT 59.964 50.000 0.00 0.00 0.00 1.73
1774 1781 6.183360 CCAACTAATAACGACCTAAGGGATCA 60.183 42.308 0.00 0.00 36.25 2.92
1775 1782 7.442656 CAACTAATAACGACCTAAGGGATCAT 58.557 38.462 0.00 0.00 36.25 2.45
1782 1789 5.703310 ACGACCTAAGGGATCATAGTTAGT 58.297 41.667 0.00 0.00 36.25 2.24
1786 1793 5.839606 ACCTAAGGGATCATAGTTAGTGTCC 59.160 44.000 0.00 0.00 36.25 4.02
1792 1799 4.586841 GGATCATAGTTAGTGTCCAGAGCT 59.413 45.833 0.00 0.00 0.00 4.09
1827 1834 0.038159 ACGTTGCTAGCTGTCTGGAC 60.038 55.000 17.23 2.72 0.00 4.02
1839 1846 0.320374 GTCTGGACGGACAATCACCA 59.680 55.000 6.41 0.00 36.35 4.17
1854 1861 1.202758 TCACCATATGGCGGACAATCC 60.203 52.381 22.18 0.00 39.32 3.01
1862 1869 0.532115 GGCGGACAATCCTTTTGCAT 59.468 50.000 0.00 0.00 33.30 3.96
1864 1871 2.165437 GGCGGACAATCCTTTTGCATTA 59.835 45.455 0.00 0.00 33.30 1.90
1870 1877 5.649831 GGACAATCCTTTTGCATTAGAGAGT 59.350 40.000 0.00 0.00 32.53 3.24
1871 1878 6.404074 GGACAATCCTTTTGCATTAGAGAGTG 60.404 42.308 0.00 0.80 32.53 3.51
1872 1879 6.006449 ACAATCCTTTTGCATTAGAGAGTGT 58.994 36.000 11.01 11.01 0.00 3.55
1873 1880 6.072286 ACAATCCTTTTGCATTAGAGAGTGTG 60.072 38.462 13.74 6.55 30.81 3.82
1874 1881 3.753272 TCCTTTTGCATTAGAGAGTGTGC 59.247 43.478 0.00 0.00 38.05 4.57
1876 1883 2.113860 TTGCATTAGAGAGTGTGCCC 57.886 50.000 0.00 0.00 36.79 5.36
1884 1891 1.534959 AGAGTGTGCCCAGAGCTCA 60.535 57.895 17.77 0.00 44.23 4.26
1886 1893 0.250467 GAGTGTGCCCAGAGCTCAAA 60.250 55.000 17.77 0.00 45.94 2.69
1898 1905 0.318762 AGCTCAAACTCCACCGAGAC 59.681 55.000 0.00 0.00 38.52 3.36
1899 1906 0.670854 GCTCAAACTCCACCGAGACC 60.671 60.000 0.00 0.00 38.52 3.85
1923 1930 2.494445 CATAGCTCGTGGGCGACA 59.506 61.111 0.00 0.00 42.81 4.35
1924 1931 1.153647 CATAGCTCGTGGGCGACAA 60.154 57.895 0.00 0.00 42.81 3.18
1927 1934 2.486636 TAGCTCGTGGGCGACAACAG 62.487 60.000 0.00 0.00 42.81 3.16
1950 1957 2.061028 GACCTTTGAAAAATGCGCCTG 58.939 47.619 4.18 0.00 0.00 4.85
1951 1958 1.412343 ACCTTTGAAAAATGCGCCTGT 59.588 42.857 4.18 0.00 0.00 4.00
1972 1979 1.372087 CCGCTCCTCACAAAGCATCC 61.372 60.000 0.00 0.00 38.45 3.51
1978 1985 2.092429 TCCTCACAAAGCATCCATACCC 60.092 50.000 0.00 0.00 0.00 3.69
1987 1994 3.048600 AGCATCCATACCCTAAGAAGCA 58.951 45.455 0.00 0.00 0.00 3.91
1993 2000 0.966875 TACCCTAAGAAGCACGGCGA 60.967 55.000 16.62 0.00 0.00 5.54
1996 2003 1.153353 CCTAAGAAGCACGGCGAAAA 58.847 50.000 16.62 0.00 0.00 2.29
2004 2011 1.006825 GCACGGCGAAAACAAATCCC 61.007 55.000 16.62 0.00 0.00 3.85
2005 2012 0.596082 CACGGCGAAAACAAATCCCT 59.404 50.000 16.62 0.00 0.00 4.20
2018 2048 1.938585 AATCCCTTCACGAGACTCCA 58.061 50.000 0.00 0.00 0.00 3.86
2028 2058 0.036010 CGAGACTCCAGCCACCAATT 60.036 55.000 0.00 0.00 0.00 2.32
2031 2061 1.168714 GACTCCAGCCACCAATTGAC 58.831 55.000 7.12 0.00 0.00 3.18
2033 2063 0.321564 CTCCAGCCACCAATTGACGA 60.322 55.000 7.12 0.00 0.00 4.20
2064 2094 0.532115 GGCAATGGAACCATGTGTCC 59.468 55.000 7.12 5.18 36.68 4.02
2090 2120 2.716814 CAGGGAGAGAATGCCATGC 58.283 57.895 0.00 0.00 43.31 4.06
2096 2126 1.802960 GAGAGAATGCCATGCCATACG 59.197 52.381 0.00 0.00 0.00 3.06
2101 2131 2.340210 ATGCCATGCCATACGTTACA 57.660 45.000 0.00 0.00 0.00 2.41
2102 2132 1.374560 TGCCATGCCATACGTTACAC 58.625 50.000 0.00 0.00 0.00 2.90
2111 2141 3.480825 GCCATACGTTACACGAGAAAACG 60.481 47.826 17.74 17.74 46.05 3.60
2118 2148 1.157870 ACACGAGAAAACGCACCCAG 61.158 55.000 0.00 0.00 36.70 4.45
2120 2150 1.961277 CGAGAAAACGCACCCAGCT 60.961 57.895 0.00 0.00 42.61 4.24
2133 2163 3.150949 CAGCTGTGAGGTGGTCCA 58.849 61.111 5.25 0.00 39.87 4.02
2134 2164 1.302033 CAGCTGTGAGGTGGTCCAC 60.302 63.158 14.13 14.13 39.87 4.02
2143 2173 1.625818 GAGGTGGTCCACAGTCTCATT 59.374 52.381 23.48 0.00 35.86 2.57
2146 2176 2.417719 GTGGTCCACAGTCTCATTGTC 58.582 52.381 17.59 0.00 34.08 3.18
2148 2178 1.339151 GGTCCACAGTCTCATTGTCCC 60.339 57.143 0.00 0.00 0.00 4.46
2154 2184 0.103208 AGTCTCATTGTCCCGATCGC 59.897 55.000 10.32 0.00 0.00 4.58
2156 2186 0.752658 TCTCATTGTCCCGATCGCAT 59.247 50.000 10.32 0.00 0.00 4.73
2157 2187 0.863799 CTCATTGTCCCGATCGCATG 59.136 55.000 10.32 6.39 0.00 4.06
2164 2194 1.179174 TCCCGATCGCATGACCCTAG 61.179 60.000 10.32 0.00 0.00 3.02
2171 2201 1.068588 TCGCATGACCCTAGTATGCAC 59.931 52.381 14.66 0.00 45.58 4.57
2172 2202 1.202521 CGCATGACCCTAGTATGCACA 60.203 52.381 14.66 0.00 45.58 4.57
2200 2231 2.035783 GGGAAGGTGGGCAAGTCC 59.964 66.667 0.00 0.00 0.00 3.85
2201 2232 2.539081 GGGAAGGTGGGCAAGTCCT 61.539 63.158 0.00 0.00 34.39 3.85
2203 2234 0.253327 GGAAGGTGGGCAAGTCCTAG 59.747 60.000 0.00 0.00 34.39 3.02
2204 2235 0.253327 GAAGGTGGGCAAGTCCTAGG 59.747 60.000 0.82 0.82 34.39 3.02
2205 2236 1.208165 AAGGTGGGCAAGTCCTAGGG 61.208 60.000 9.46 0.00 34.39 3.53
2206 2237 2.272471 GTGGGCAAGTCCTAGGGC 59.728 66.667 4.79 4.79 34.39 5.19
2207 2238 3.399181 TGGGCAAGTCCTAGGGCG 61.399 66.667 7.97 0.00 34.39 6.13
2208 2239 4.176752 GGGCAAGTCCTAGGGCGG 62.177 72.222 7.97 5.68 34.39 6.13
2209 2240 3.081409 GGCAAGTCCTAGGGCGGA 61.081 66.667 7.97 0.00 0.00 5.54
2210 2241 2.666098 GGCAAGTCCTAGGGCGGAA 61.666 63.158 7.97 0.00 34.20 4.30
2211 2242 1.527370 GCAAGTCCTAGGGCGGAAT 59.473 57.895 7.97 0.00 34.20 3.01
2214 2245 2.224548 GCAAGTCCTAGGGCGGAATAAT 60.225 50.000 7.97 0.00 34.20 1.28
2215 2246 3.007614 GCAAGTCCTAGGGCGGAATAATA 59.992 47.826 7.97 0.00 34.20 0.98
2217 2248 4.886496 AGTCCTAGGGCGGAATAATAAC 57.114 45.455 7.97 0.00 34.20 1.89
2218 2249 4.490706 AGTCCTAGGGCGGAATAATAACT 58.509 43.478 7.97 0.00 34.20 2.24
2219 2250 4.906060 AGTCCTAGGGCGGAATAATAACTT 59.094 41.667 7.97 0.00 34.20 2.66
2221 2252 6.729569 AGTCCTAGGGCGGAATAATAACTTAT 59.270 38.462 7.97 0.00 34.20 1.73
2225 2256 7.881232 CCTAGGGCGGAATAATAACTTATGAAA 59.119 37.037 0.00 0.00 0.00 2.69
2226 2257 9.280174 CTAGGGCGGAATAATAACTTATGAAAA 57.720 33.333 0.00 0.00 0.00 2.29
2257 2367 7.701539 AATACACATGTGCTCAATAAAAGGA 57.298 32.000 25.68 0.00 0.00 3.36
2258 2368 5.376854 ACACATGTGCTCAATAAAAGGAC 57.623 39.130 25.68 0.00 35.82 3.85
2261 2371 4.082571 ACATGTGCTCAATAAAAGGACAGC 60.083 41.667 0.00 0.00 46.24 4.40
2262 2372 2.819608 TGTGCTCAATAAAAGGACAGCC 59.180 45.455 0.00 0.00 39.74 4.85
2263 2373 2.164422 GTGCTCAATAAAAGGACAGCCC 59.836 50.000 0.00 0.00 35.40 5.19
2264 2374 1.401905 GCTCAATAAAAGGACAGCCCG 59.598 52.381 0.00 0.00 40.87 6.13
2266 2376 1.353022 TCAATAAAAGGACAGCCCGGT 59.647 47.619 0.00 0.00 40.87 5.28
2267 2377 1.472480 CAATAAAAGGACAGCCCGGTG 59.528 52.381 0.00 0.00 40.87 4.94
2269 2379 2.058125 TAAAAGGACAGCCCGGTGCA 62.058 55.000 15.92 0.00 44.83 4.57
2270 2380 2.713531 AAAAGGACAGCCCGGTGCAT 62.714 55.000 15.92 4.84 44.83 3.96
2271 2381 3.925630 AAGGACAGCCCGGTGCATG 62.926 63.158 15.92 12.80 44.83 4.06
2272 2382 4.722700 GGACAGCCCGGTGCATGT 62.723 66.667 15.92 15.26 44.83 3.21
2273 2383 2.267642 GACAGCCCGGTGCATGTA 59.732 61.111 15.92 0.00 44.83 2.29
2275 2385 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
2284 2394 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2286 2396 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2299 2409 3.551496 CTTGCGCAGGGTCTGGGAA 62.551 63.158 12.39 2.55 45.41 3.97
2302 2412 4.101448 CGCAGGGTCTGGGAAGGG 62.101 72.222 6.16 0.00 45.41 3.95
2303 2413 2.936032 GCAGGGTCTGGGAAGGGT 60.936 66.667 0.00 0.00 31.21 4.34
2304 2414 2.972819 GCAGGGTCTGGGAAGGGTC 61.973 68.421 0.00 0.00 31.21 4.46
2305 2415 2.125225 AGGGTCTGGGAAGGGTCC 59.875 66.667 0.00 0.00 44.10 4.46
2307 2417 2.284405 GGTCTGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
2309 2419 2.284405 TCTGGGAAGGGTCCGACC 60.284 66.667 9.30 9.30 46.04 4.79
2311 2421 2.926242 TGGGAAGGGTCCGACCAC 60.926 66.667 19.43 8.70 46.04 4.16
2313 2423 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2314 2424 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2316 2426 0.108019 GAAGGGTCCGACCACTTTGT 59.892 55.000 19.43 0.00 41.02 2.83
2317 2427 0.549469 AAGGGTCCGACCACTTTGTT 59.451 50.000 19.43 0.11 41.02 2.83
2318 2428 0.549469 AGGGTCCGACCACTTTGTTT 59.451 50.000 19.43 0.00 41.02 2.83
2320 2430 1.752498 GGGTCCGACCACTTTGTTTTT 59.248 47.619 19.43 0.00 41.02 1.94
2321 2431 2.950975 GGGTCCGACCACTTTGTTTTTA 59.049 45.455 19.43 0.00 41.02 1.52
2322 2432 3.380954 GGGTCCGACCACTTTGTTTTTAA 59.619 43.478 19.43 0.00 41.02 1.52
2323 2433 4.142204 GGGTCCGACCACTTTGTTTTTAAA 60.142 41.667 19.43 0.00 41.02 1.52
2324 2434 5.038683 GGTCCGACCACTTTGTTTTTAAAG 58.961 41.667 13.05 0.00 42.09 1.85
2325 2435 5.038683 GTCCGACCACTTTGTTTTTAAAGG 58.961 41.667 0.00 0.00 40.98 3.11
2326 2436 4.098196 TCCGACCACTTTGTTTTTAAAGGG 59.902 41.667 0.00 0.00 40.98 3.95
2328 2438 4.678309 CGACCACTTTGTTTTTAAAGGGCA 60.678 41.667 0.00 0.00 39.25 5.36
2330 2440 4.938832 ACCACTTTGTTTTTAAAGGGCAAC 59.061 37.500 0.00 0.00 39.25 4.17
2342 2452 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
2343 2453 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
2344 2454 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
2346 2456 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
2353 2463 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2354 2464 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2355 2465 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2370 2582 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
2371 2583 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
2372 2584 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
2373 2585 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
2375 2587 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
2376 2588 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
2377 2589 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
2378 2590 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
2379 2591 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
2380 2592 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
2381 2593 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
2382 2594 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2383 2595 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2384 2596 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2385 2597 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2386 2598 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2401 2613 4.057224 TGGTTCGACCACATGTGC 57.943 55.556 20.81 6.86 44.79 4.57
2402 2614 1.449782 TGGTTCGACCACATGTGCT 59.550 52.632 20.81 6.88 44.79 4.40
2403 2615 0.602638 TGGTTCGACCACATGTGCTC 60.603 55.000 20.81 15.33 44.79 4.26
2404 2616 0.602638 GGTTCGACCACATGTGCTCA 60.603 55.000 20.81 4.95 38.42 4.26
2405 2617 1.225855 GTTCGACCACATGTGCTCAA 58.774 50.000 20.81 10.33 0.00 3.02
2406 2618 1.806542 GTTCGACCACATGTGCTCAAT 59.193 47.619 20.81 2.53 0.00 2.57
2407 2619 1.725641 TCGACCACATGTGCTCAATC 58.274 50.000 20.81 10.49 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
754 756 0.319555 CTCTTGGACGCTTCAACCGA 60.320 55.000 0.00 0.00 0.00 4.69
829 831 2.519780 TTTGCCTTTCGCCGGGTT 60.520 55.556 2.18 0.00 36.24 4.11
1008 1010 1.426751 TCTTACCCAAACTGTCCCGT 58.573 50.000 0.00 0.00 0.00 5.28
1404 1410 8.338259 CGTATGAAAGGGAGTTTTATTCATCAG 58.662 37.037 2.87 0.00 40.26 2.90
1487 1494 8.167605 TCATTTTGGAACGTATTTAAACTCCA 57.832 30.769 0.00 0.00 0.00 3.86
1503 1510 7.300556 TCCATTCAGTGAATTTCATTTTGGA 57.699 32.000 15.85 14.73 28.87 3.53
1505 1512 8.821147 TCTTCCATTCAGTGAATTTCATTTTG 57.179 30.769 15.85 3.91 28.87 2.44
1518 1525 7.495055 GGCATGATTTTTATCTTCCATTCAGT 58.505 34.615 0.00 0.00 0.00 3.41
1519 1526 6.639686 CGGCATGATTTTTATCTTCCATTCAG 59.360 38.462 0.00 0.00 0.00 3.02
1533 1540 5.132897 ACACATAACAACGGCATGATTTT 57.867 34.783 0.00 0.00 0.00 1.82
1536 1543 3.755905 TCAACACATAACAACGGCATGAT 59.244 39.130 0.00 0.00 0.00 2.45
1542 1549 7.805542 TGTATTCAAATCAACACATAACAACGG 59.194 33.333 0.00 0.00 0.00 4.44
1545 1552 9.636879 CCATGTATTCAAATCAACACATAACAA 57.363 29.630 0.00 0.00 0.00 2.83
1595 1602 0.814457 TCGGCACACAAAGCTTTTGT 59.186 45.000 9.53 13.98 0.00 2.83
1619 1626 6.226787 TGGTTCTCTTTTCTTCTGCTTCTAG 58.773 40.000 0.00 0.00 0.00 2.43
1641 1648 2.661709 CGACGGCGCATTATTTGTATGG 60.662 50.000 10.83 0.00 0.00 2.74
1642 1649 2.559872 CGACGGCGCATTATTTGTATG 58.440 47.619 10.83 0.00 0.00 2.39
1643 1650 2.941891 CGACGGCGCATTATTTGTAT 57.058 45.000 10.83 0.00 0.00 2.29
1664 1671 2.508663 GTCAGTAACCGCGGCCTC 60.509 66.667 28.58 15.57 0.00 4.70
1667 1674 1.373748 TCTTGTCAGTAACCGCGGC 60.374 57.895 28.58 9.52 0.00 6.53
1669 1676 1.012486 GGGTCTTGTCAGTAACCGCG 61.012 60.000 0.00 0.00 32.34 6.46
1674 1681 1.697432 CCAGGTGGGTCTTGTCAGTAA 59.303 52.381 0.00 0.00 0.00 2.24
1691 1698 1.153549 GCTCGACCTAAGCCACCAG 60.154 63.158 0.00 0.00 33.53 4.00
1692 1699 2.978824 GCTCGACCTAAGCCACCA 59.021 61.111 0.00 0.00 33.53 4.17
1694 1701 1.516603 GTCGCTCGACCTAAGCCAC 60.517 63.158 11.01 0.00 39.08 5.01
1708 1715 0.665835 TTGTGTGGTTTGATGGTCGC 59.334 50.000 0.00 0.00 0.00 5.19
1722 1729 4.153475 GGCGTTGTCTGTGTATATTTGTGT 59.847 41.667 0.00 0.00 0.00 3.72
1743 1750 1.929169 GTCGTTATTAGTTGGGTCGGC 59.071 52.381 0.00 0.00 0.00 5.54
1747 1754 4.162888 CCCTTAGGTCGTTATTAGTTGGGT 59.837 45.833 0.00 0.00 0.00 4.51
1749 1756 5.603170 TCCCTTAGGTCGTTATTAGTTGG 57.397 43.478 0.00 0.00 0.00 3.77
1750 1757 6.812998 TGATCCCTTAGGTCGTTATTAGTTG 58.187 40.000 0.00 0.00 0.00 3.16
1751 1758 7.613551 ATGATCCCTTAGGTCGTTATTAGTT 57.386 36.000 0.00 0.00 0.00 2.24
1752 1759 7.949006 ACTATGATCCCTTAGGTCGTTATTAGT 59.051 37.037 0.00 0.00 0.00 2.24
1756 1763 7.949006 ACTAACTATGATCCCTTAGGTCGTTAT 59.051 37.037 0.00 0.00 0.00 1.89
1757 1764 7.230108 CACTAACTATGATCCCTTAGGTCGTTA 59.770 40.741 0.00 0.00 0.00 3.18
1774 1781 4.160626 GGTTGAGCTCTGGACACTAACTAT 59.839 45.833 16.19 0.00 0.00 2.12
1775 1782 3.510360 GGTTGAGCTCTGGACACTAACTA 59.490 47.826 16.19 0.00 0.00 2.24
1782 1789 0.471780 TGGAGGTTGAGCTCTGGACA 60.472 55.000 16.19 3.93 0.00 4.02
1786 1793 2.630158 CTCAATGGAGGTTGAGCTCTG 58.370 52.381 16.19 1.15 45.89 3.35
1792 1799 3.138304 CAACGTTCTCAATGGAGGTTGA 58.862 45.455 10.61 0.00 40.39 3.18
1839 1846 2.362077 GCAAAAGGATTGTCCGCCATAT 59.638 45.455 0.00 0.00 42.75 1.78
1854 1861 3.119708 GGGCACACTCTCTAATGCAAAAG 60.120 47.826 0.00 0.00 39.92 2.27
1862 1869 0.898320 GCTCTGGGCACACTCTCTAA 59.102 55.000 0.00 0.00 41.35 2.10
1864 1871 1.229145 AGCTCTGGGCACACTCTCT 60.229 57.895 0.74 0.00 44.79 3.10
1870 1877 0.250467 GAGTTTGAGCTCTGGGCACA 60.250 55.000 16.19 0.00 44.79 4.57
1871 1878 0.957888 GGAGTTTGAGCTCTGGGCAC 60.958 60.000 16.19 0.00 44.79 5.01
1872 1879 1.376466 GGAGTTTGAGCTCTGGGCA 59.624 57.895 16.19 0.00 44.79 5.36
1873 1880 0.957888 GTGGAGTTTGAGCTCTGGGC 60.958 60.000 16.19 0.00 42.19 5.36
1874 1881 0.322008 GGTGGAGTTTGAGCTCTGGG 60.322 60.000 16.19 0.00 35.89 4.45
1876 1883 0.318441 TCGGTGGAGTTTGAGCTCTG 59.682 55.000 16.19 0.00 35.89 3.35
1884 1891 0.680061 GACAGGTCTCGGTGGAGTTT 59.320 55.000 0.00 0.00 41.26 2.66
1886 1893 1.972223 CGACAGGTCTCGGTGGAGT 60.972 63.158 0.00 0.00 41.26 3.85
1923 1930 4.359706 GCATTTTTCAAAGGTCGACTGTT 58.640 39.130 16.46 6.70 0.00 3.16
1924 1931 3.548014 CGCATTTTTCAAAGGTCGACTGT 60.548 43.478 16.46 0.00 0.00 3.55
1927 1934 1.713932 GCGCATTTTTCAAAGGTCGAC 59.286 47.619 7.13 7.13 0.00 4.20
1950 1957 0.884704 TGCTTTGTGAGGAGCGGAAC 60.885 55.000 0.00 0.00 41.75 3.62
1951 1958 0.036732 ATGCTTTGTGAGGAGCGGAA 59.963 50.000 0.00 0.00 41.75 4.30
1961 1968 4.780815 TCTTAGGGTATGGATGCTTTGTG 58.219 43.478 0.00 0.00 0.00 3.33
1972 1979 1.583054 GCCGTGCTTCTTAGGGTATG 58.417 55.000 0.00 0.00 0.00 2.39
1978 1985 1.529438 TGTTTTCGCCGTGCTTCTTAG 59.471 47.619 0.00 0.00 0.00 2.18
1987 1994 1.268625 GAAGGGATTTGTTTTCGCCGT 59.731 47.619 0.00 0.00 0.00 5.68
1993 2000 4.461198 AGTCTCGTGAAGGGATTTGTTTT 58.539 39.130 0.00 0.00 0.00 2.43
1996 2003 2.028020 GGAGTCTCGTGAAGGGATTTGT 60.028 50.000 0.00 0.00 0.00 2.83
2004 2011 0.389166 GTGGCTGGAGTCTCGTGAAG 60.389 60.000 0.00 0.00 0.00 3.02
2005 2012 1.666011 GTGGCTGGAGTCTCGTGAA 59.334 57.895 0.00 0.00 0.00 3.18
2018 2048 0.108585 ACACTCGTCAATTGGTGGCT 59.891 50.000 14.48 0.00 34.42 4.75
2028 2058 2.265904 CCGGACTCCACACTCGTCA 61.266 63.158 0.00 0.00 0.00 4.35
2031 2061 2.507110 ATTGCCGGACTCCACACTCG 62.507 60.000 5.05 0.00 0.00 4.18
2033 2063 1.003355 CATTGCCGGACTCCACACT 60.003 57.895 5.05 0.00 0.00 3.55
2064 2094 2.262774 ATTCTCTCCCTGCGGCTTGG 62.263 60.000 0.00 3.51 0.00 3.61
2096 2126 1.070376 GGGTGCGTTTTCTCGTGTAAC 60.070 52.381 0.00 0.00 0.00 2.50
2101 2131 2.251642 GCTGGGTGCGTTTTCTCGT 61.252 57.895 0.00 0.00 0.00 4.18
2102 2132 2.556287 GCTGGGTGCGTTTTCTCG 59.444 61.111 0.00 0.00 0.00 4.04
2111 2141 2.670934 CACCTCACAGCTGGGTGC 60.671 66.667 22.53 0.00 42.91 5.01
2118 2148 2.828868 TGTGGACCACCTCACAGC 59.171 61.111 22.00 0.00 38.75 4.40
2120 2150 0.398522 AGACTGTGGACCACCTCACA 60.399 55.000 22.00 1.70 41.01 3.58
2133 2163 1.135139 CGATCGGGACAATGAGACTGT 59.865 52.381 7.38 0.00 0.00 3.55
2134 2164 1.845266 CGATCGGGACAATGAGACTG 58.155 55.000 7.38 0.00 0.00 3.51
2143 2173 2.499205 GGTCATGCGATCGGGACA 59.501 61.111 18.30 6.82 32.00 4.02
2146 2176 1.290324 CTAGGGTCATGCGATCGGG 59.710 63.158 18.30 0.00 0.00 5.14
2148 2178 2.868662 CATACTAGGGTCATGCGATCG 58.131 52.381 11.69 11.69 0.00 3.69
2154 2184 2.808202 GCCTGTGCATACTAGGGTCATG 60.808 54.545 10.13 0.00 37.47 3.07
2156 2186 0.830648 GCCTGTGCATACTAGGGTCA 59.169 55.000 10.13 0.00 37.47 4.02
2157 2187 0.830648 TGCCTGTGCATACTAGGGTC 59.169 55.000 10.13 0.00 44.23 4.46
2171 2201 1.277580 ACCTTCCCCTCTCATGCCTG 61.278 60.000 0.00 0.00 0.00 4.85
2172 2202 1.083706 ACCTTCCCCTCTCATGCCT 59.916 57.895 0.00 0.00 0.00 4.75
2176 2206 2.003548 GCCCACCTTCCCCTCTCAT 61.004 63.158 0.00 0.00 0.00 2.90
2177 2207 2.610859 GCCCACCTTCCCCTCTCA 60.611 66.667 0.00 0.00 0.00 3.27
2200 2231 8.842358 TTTCATAAGTTATTATTCCGCCCTAG 57.158 34.615 0.00 0.00 28.73 3.02
2201 2232 9.802039 ATTTTCATAAGTTATTATTCCGCCCTA 57.198 29.630 0.00 0.00 28.73 3.53
2203 2234 9.836076 GTATTTTCATAAGTTATTATTCCGCCC 57.164 33.333 0.00 0.00 28.73 6.13
2232 2342 8.673711 GTCCTTTTATTGAGCACATGTGTATTA 58.326 33.333 26.01 10.21 0.00 0.98
2233 2343 7.176515 TGTCCTTTTATTGAGCACATGTGTATT 59.823 33.333 26.01 12.81 0.00 1.89
2242 2352 2.164422 GGGCTGTCCTTTTATTGAGCAC 59.836 50.000 0.00 0.00 0.00 4.40
2243 2353 2.446435 GGGCTGTCCTTTTATTGAGCA 58.554 47.619 0.00 0.00 0.00 4.26
2244 2354 1.401905 CGGGCTGTCCTTTTATTGAGC 59.598 52.381 0.00 0.00 0.00 4.26
2245 2355 2.017049 CCGGGCTGTCCTTTTATTGAG 58.983 52.381 0.00 0.00 0.00 3.02
2246 2356 1.353022 ACCGGGCTGTCCTTTTATTGA 59.647 47.619 6.32 0.00 0.00 2.57
2247 2357 1.472480 CACCGGGCTGTCCTTTTATTG 59.528 52.381 6.32 0.00 0.00 1.90
2248 2358 1.834188 CACCGGGCTGTCCTTTTATT 58.166 50.000 6.32 0.00 0.00 1.40
2249 2359 0.679960 GCACCGGGCTGTCCTTTTAT 60.680 55.000 6.32 0.00 40.25 1.40
2250 2360 1.302993 GCACCGGGCTGTCCTTTTA 60.303 57.895 6.32 0.00 40.25 1.52
2251 2361 2.597510 GCACCGGGCTGTCCTTTT 60.598 61.111 6.32 0.00 40.25 2.27
2252 2362 3.210012 ATGCACCGGGCTGTCCTTT 62.210 57.895 6.32 0.00 45.15 3.11
2253 2363 3.650950 ATGCACCGGGCTGTCCTT 61.651 61.111 6.32 0.00 45.15 3.36
2254 2364 4.415150 CATGCACCGGGCTGTCCT 62.415 66.667 6.32 0.00 45.15 3.85
2255 2365 3.323758 TACATGCACCGGGCTGTCC 62.324 63.158 6.32 0.00 45.15 4.02
2256 2366 1.815421 CTACATGCACCGGGCTGTC 60.815 63.158 6.32 0.00 45.15 3.51
2257 2367 2.268920 CTACATGCACCGGGCTGT 59.731 61.111 6.32 14.07 45.15 4.40
2258 2368 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
2261 2371 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
2281 2391 3.551496 TTCCCAGACCCTGCGCAAG 62.551 63.158 13.05 4.91 43.44 4.01
2284 2394 4.785453 CCTTCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2286 2396 2.936032 ACCCTTCCCAGACCCTGC 60.936 66.667 0.00 0.00 0.00 4.85
2288 2398 2.125225 GGACCCTTCCCAGACCCT 59.875 66.667 0.00 0.00 35.57 4.34
2291 2401 2.657066 GGTCGGACCCTTCCCAGAC 61.657 68.421 16.55 0.00 38.99 3.51
2292 2402 2.284405 GGTCGGACCCTTCCCAGA 60.284 66.667 16.55 0.00 38.99 3.86
2293 2403 2.606519 TGGTCGGACCCTTCCCAG 60.607 66.667 23.81 0.00 38.99 4.45
2294 2404 2.926242 GTGGTCGGACCCTTCCCA 60.926 66.667 23.81 1.47 38.99 4.37
2296 2406 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2297 2407 0.108019 ACAAAGTGGTCGGACCCTTC 59.892 55.000 23.81 13.97 37.50 3.46
2299 2409 0.549469 AAACAAAGTGGTCGGACCCT 59.451 50.000 23.81 16.82 37.50 4.34
2302 2412 5.038683 CCTTTAAAAACAAAGTGGTCGGAC 58.961 41.667 0.00 0.00 34.34 4.79
2303 2413 4.098196 CCCTTTAAAAACAAAGTGGTCGGA 59.902 41.667 0.00 0.00 34.34 4.55
2304 2414 4.364860 CCCTTTAAAAACAAAGTGGTCGG 58.635 43.478 0.00 0.00 34.34 4.79
2305 2415 3.799963 GCCCTTTAAAAACAAAGTGGTCG 59.200 43.478 0.00 0.00 34.34 4.79
2307 2417 4.828072 TGCCCTTTAAAAACAAAGTGGT 57.172 36.364 0.00 0.00 34.34 4.16
2309 2419 5.064579 CAGGTTGCCCTTTAAAAACAAAGTG 59.935 40.000 3.59 0.55 39.89 3.16
2311 2421 4.574421 CCAGGTTGCCCTTTAAAAACAAAG 59.426 41.667 3.59 0.00 39.89 2.77
2313 2423 3.519913 ACCAGGTTGCCCTTTAAAAACAA 59.480 39.130 0.00 0.00 39.89 2.83
2314 2424 3.108376 ACCAGGTTGCCCTTTAAAAACA 58.892 40.909 0.00 0.00 39.89 2.83
2316 2426 2.158885 GCACCAGGTTGCCCTTTAAAAA 60.159 45.455 0.00 0.00 39.89 1.94
2317 2427 1.414550 GCACCAGGTTGCCCTTTAAAA 59.585 47.619 0.00 0.00 39.89 1.52
2318 2428 1.044611 GCACCAGGTTGCCCTTTAAA 58.955 50.000 0.00 0.00 39.89 1.52
2320 2430 0.114168 ATGCACCAGGTTGCCCTTTA 59.886 50.000 10.46 0.00 42.25 1.85
2321 2431 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
2322 2432 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
2323 2433 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
2324 2434 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
2325 2435 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
2326 2436 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
2328 2438 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
2353 2463 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2354 2464 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2355 2465 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
2356 2466 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
2366 2578 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2368 2580 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2369 2581 3.157680 CCAAAGTGGTCGGACCCT 58.842 61.111 23.81 16.82 37.50 4.34
2385 2597 2.162716 GAGCACATGTGGTCGAACC 58.837 57.895 34.66 17.91 46.20 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.