Multiple sequence alignment - TraesCS5B01G390500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G390500 chr5B 100.000 5651 0 0 1 5651 570066451 570072101 0.000000e+00 10436.0
1 TraesCS5B01G390500 chr5B 84.982 273 31 7 5289 5557 268319189 268319455 9.330000e-68 268.0
2 TraesCS5B01G390500 chr5A 91.656 4506 195 61 283 4696 583557482 583561898 0.000000e+00 6071.0
3 TraesCS5B01G390500 chr5A 93.644 472 16 7 4772 5229 583562282 583562753 0.000000e+00 693.0
4 TraesCS5B01G390500 chr5A 89.919 248 22 2 5230 5477 583562787 583563031 3.290000e-82 316.0
5 TraesCS5B01G390500 chr5A 90.286 175 15 1 5477 5651 583563277 583563449 1.580000e-55 228.0
6 TraesCS5B01G390500 chr5D 93.766 2326 92 19 2850 5152 463188992 463191287 0.000000e+00 3443.0
7 TraesCS5B01G390500 chr5D 93.604 1673 85 14 283 1944 463186141 463187802 0.000000e+00 2477.0
8 TraesCS5B01G390500 chr5D 95.494 932 21 4 1940 2852 463187903 463188832 0.000000e+00 1469.0
9 TraesCS5B01G390500 chr5D 85.476 420 54 5 5234 5651 463191579 463191993 1.120000e-116 431.0
10 TraesCS5B01G390500 chr5D 83.942 274 37 6 5289 5560 236929585 236929317 7.270000e-64 255.0
11 TraesCS5B01G390500 chr5D 82.807 285 39 9 5276 5558 152738093 152738369 4.370000e-61 246.0
12 TraesCS5B01G390500 chr6D 89.895 1138 94 11 3261 4384 431261697 431262827 0.000000e+00 1445.0
13 TraesCS5B01G390500 chr6D 89.270 1137 96 12 3267 4384 380980877 380979748 0.000000e+00 1400.0
14 TraesCS5B01G390500 chr1B 89.837 492 42 5 3899 4384 374010955 374010466 4.810000e-175 625.0
15 TraesCS5B01G390500 chr7B 95.775 284 12 0 1 284 741552270 741551987 5.160000e-125 459.0
16 TraesCS5B01G390500 chr7B 90.237 338 33 0 3844 4181 156916176 156915839 5.200000e-120 442.0
17 TraesCS5B01G390500 chr3A 95.455 286 11 2 1 286 14062326 14062043 6.670000e-124 455.0
18 TraesCS5B01G390500 chr3A 94.718 284 15 0 1 284 575785757 575785474 5.200000e-120 442.0
19 TraesCS5B01G390500 chr3A 86.164 159 19 3 1820 1977 38273120 38273276 9.740000e-38 169.0
20 TraesCS5B01G390500 chr7D 95.139 288 13 1 1 287 140920970 140921257 2.400000e-123 453.0
21 TraesCS5B01G390500 chr7D 82.807 285 39 9 5276 5558 511118599 511118875 4.370000e-61 246.0
22 TraesCS5B01G390500 chr7A 95.423 284 13 0 1 284 508843846 508843563 2.400000e-123 453.0
23 TraesCS5B01G390500 chr7A 89.655 58 4 2 3859 3916 51064478 51064423 7.850000e-09 73.1
24 TraesCS5B01G390500 chr7A 89.655 58 4 2 3859 3916 51152757 51152702 7.850000e-09 73.1
25 TraesCS5B01G390500 chr7A 89.655 58 4 2 3859 3916 51184509 51184454 7.850000e-09 73.1
26 TraesCS5B01G390500 chr7A 89.655 58 4 2 3859 3916 51270530 51270475 7.850000e-09 73.1
27 TraesCS5B01G390500 chr1A 95.070 284 14 0 1 284 84177339 84177056 1.120000e-121 448.0
28 TraesCS5B01G390500 chr1A 94.718 284 15 0 1 284 502825746 502826029 5.200000e-120 442.0
29 TraesCS5B01G390500 chr6A 94.386 285 16 0 1 285 22787707 22787423 6.720000e-119 438.0
30 TraesCS5B01G390500 chr6A 93.772 289 17 1 2 290 2489438 2489725 3.130000e-117 433.0
31 TraesCS5B01G390500 chr2B 83.871 279 38 5 5280 5556 7447071 7447344 5.620000e-65 259.0
32 TraesCS5B01G390500 chr2B 84.298 121 10 8 2109 2224 446218501 446218617 5.990000e-20 110.0
33 TraesCS5B01G390500 chr3D 83.883 273 38 3 5286 5557 501076962 501077229 7.270000e-64 255.0
34 TraesCS5B01G390500 chr4D 82.986 288 36 9 5276 5560 195523843 195523566 1.220000e-61 248.0
35 TraesCS5B01G390500 chr2A 76.176 340 60 16 283 611 127151814 127151485 5.860000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G390500 chr5B 570066451 570072101 5650 False 10436 10436 100.00000 1 5651 1 chr5B.!!$F2 5650
1 TraesCS5B01G390500 chr5A 583557482 583563449 5967 False 1827 6071 91.37625 283 5651 4 chr5A.!!$F1 5368
2 TraesCS5B01G390500 chr5D 463186141 463191993 5852 False 1955 3443 92.08500 283 5651 4 chr5D.!!$F2 5368
3 TraesCS5B01G390500 chr6D 431261697 431262827 1130 False 1445 1445 89.89500 3261 4384 1 chr6D.!!$F1 1123
4 TraesCS5B01G390500 chr6D 380979748 380980877 1129 True 1400 1400 89.27000 3267 4384 1 chr6D.!!$R1 1117

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
921 928 0.035458 CTCCTCAAACGGCAACTCCT 59.965 55.000 0.00 0.0 0.0 3.69 F
1032 1039 0.121197 TCTTCTCCACCCCCTTCCAT 59.879 55.000 0.00 0.0 0.0 3.41 F
1038 1045 0.403453 CCACCCCCTTCCATCCCTAT 60.403 60.000 0.00 0.0 0.0 2.57 F
1205 1212 0.535328 TTCGAATTGCGTGGTTCCCA 60.535 50.000 0.00 0.0 41.8 4.37 F
1441 1451 1.657538 CGACTTGTTTCTGTTCTGCGC 60.658 52.381 0.00 0.0 0.0 6.09 F
2499 2714 0.817634 TGCCGTGCAGCAGTTAACTT 60.818 50.000 5.07 0.0 38.0 2.66 F
3445 3823 0.391130 GTACAGTTGATCAGCGGCCA 60.391 55.000 9.49 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1900 1953 2.157738 GCCTAGGACATACCGATACGT 58.842 52.381 14.75 0.00 44.74 3.57 R
1908 1961 2.632996 TGCCATGTAGCCTAGGACATAC 59.367 50.000 14.75 12.15 34.52 2.39 R
2085 2246 2.873797 CTTCCCCAAGCTTGCTACC 58.126 57.895 21.43 0.00 0.00 3.18 R
2413 2600 3.929610 GGCTGATTTATCGGTCTGATAGC 59.070 47.826 5.19 5.19 40.58 2.97 R
3339 3717 2.146342 AGGTTCATGCGACTGTTTCAG 58.854 47.619 0.00 0.00 37.52 3.02 R
4057 4462 1.206371 AGGACCCTGTCGAATTTACCG 59.794 52.381 0.00 0.00 32.65 4.02 R
4713 5139 0.035343 GAGGGGGTTCTGTAAGGTGC 60.035 60.000 0.00 0.00 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.835634 ACTTAGCTATTGTGAAGTTAGAAGC 57.164 36.000 0.00 0.00 0.00 3.86
31 32 6.819146 ACTTAGCTATTGTGAAGTTAGAAGCC 59.181 38.462 0.00 0.00 0.00 4.35
32 33 5.428184 AGCTATTGTGAAGTTAGAAGCCT 57.572 39.130 0.00 0.00 0.00 4.58
33 34 6.546428 AGCTATTGTGAAGTTAGAAGCCTA 57.454 37.500 0.00 0.00 0.00 3.93
34 35 6.947464 AGCTATTGTGAAGTTAGAAGCCTAA 58.053 36.000 0.00 0.00 32.76 2.69
44 45 4.828829 GTTAGAAGCCTAACTTAGCCACA 58.171 43.478 7.79 0.00 46.96 4.17
45 46 5.429130 GTTAGAAGCCTAACTTAGCCACAT 58.571 41.667 7.79 0.00 46.96 3.21
46 47 4.576330 AGAAGCCTAACTTAGCCACATT 57.424 40.909 0.00 0.00 39.29 2.71
47 48 4.923415 AGAAGCCTAACTTAGCCACATTT 58.077 39.130 0.00 0.00 39.29 2.32
48 49 4.944317 AGAAGCCTAACTTAGCCACATTTC 59.056 41.667 0.00 0.00 39.29 2.17
49 50 4.301072 AGCCTAACTTAGCCACATTTCA 57.699 40.909 0.00 0.00 0.00 2.69
50 51 4.860022 AGCCTAACTTAGCCACATTTCAT 58.140 39.130 0.00 0.00 0.00 2.57
51 52 4.884164 AGCCTAACTTAGCCACATTTCATC 59.116 41.667 0.00 0.00 0.00 2.92
52 53 4.036852 GCCTAACTTAGCCACATTTCATCC 59.963 45.833 0.00 0.00 0.00 3.51
53 54 4.273480 CCTAACTTAGCCACATTTCATCCG 59.727 45.833 0.00 0.00 0.00 4.18
54 55 3.350219 ACTTAGCCACATTTCATCCGT 57.650 42.857 0.00 0.00 0.00 4.69
55 56 3.686016 ACTTAGCCACATTTCATCCGTT 58.314 40.909 0.00 0.00 0.00 4.44
56 57 3.440173 ACTTAGCCACATTTCATCCGTTG 59.560 43.478 0.00 0.00 0.00 4.10
57 58 1.176527 AGCCACATTTCATCCGTTGG 58.823 50.000 0.00 0.00 0.00 3.77
58 59 1.173043 GCCACATTTCATCCGTTGGA 58.827 50.000 0.00 0.00 35.55 3.53
59 60 1.750778 GCCACATTTCATCCGTTGGAT 59.249 47.619 0.00 0.00 44.21 3.41
60 61 2.223572 GCCACATTTCATCCGTTGGATC 60.224 50.000 0.00 0.00 40.98 3.36
61 62 3.282021 CCACATTTCATCCGTTGGATCT 58.718 45.455 0.00 0.00 40.98 2.75
62 63 4.450976 CCACATTTCATCCGTTGGATCTA 58.549 43.478 0.00 0.00 40.98 1.98
63 64 4.512944 CCACATTTCATCCGTTGGATCTAG 59.487 45.833 0.00 0.00 40.98 2.43
64 65 5.359756 CACATTTCATCCGTTGGATCTAGA 58.640 41.667 0.00 0.00 40.98 2.43
65 66 5.817296 CACATTTCATCCGTTGGATCTAGAA 59.183 40.000 0.00 0.00 40.98 2.10
66 67 6.484643 CACATTTCATCCGTTGGATCTAGAAT 59.515 38.462 0.00 0.00 40.98 2.40
67 68 7.657354 CACATTTCATCCGTTGGATCTAGAATA 59.343 37.037 0.00 0.00 40.98 1.75
68 69 8.210946 ACATTTCATCCGTTGGATCTAGAATAA 58.789 33.333 0.00 0.00 40.98 1.40
69 70 9.056005 CATTTCATCCGTTGGATCTAGAATAAA 57.944 33.333 0.00 0.00 40.98 1.40
70 71 9.799106 ATTTCATCCGTTGGATCTAGAATAAAT 57.201 29.630 0.00 0.00 40.98 1.40
71 72 8.607441 TTCATCCGTTGGATCTAGAATAAATG 57.393 34.615 0.00 0.00 40.98 2.32
72 73 7.161404 TCATCCGTTGGATCTAGAATAAATGG 58.839 38.462 13.14 13.14 40.98 3.16
73 74 5.305585 TCCGTTGGATCTAGAATAAATGGC 58.694 41.667 13.99 0.00 0.00 4.40
74 75 5.071788 TCCGTTGGATCTAGAATAAATGGCT 59.928 40.000 13.99 0.00 0.00 4.75
75 76 5.180117 CCGTTGGATCTAGAATAAATGGCTG 59.820 44.000 0.00 0.00 0.00 4.85
76 77 5.991606 CGTTGGATCTAGAATAAATGGCTGA 59.008 40.000 0.00 0.00 0.00 4.26
77 78 6.483307 CGTTGGATCTAGAATAAATGGCTGAA 59.517 38.462 0.00 0.00 0.00 3.02
78 79 7.012327 CGTTGGATCTAGAATAAATGGCTGAAA 59.988 37.037 0.00 0.00 0.00 2.69
79 80 8.854117 GTTGGATCTAGAATAAATGGCTGAAAT 58.146 33.333 0.00 0.00 0.00 2.17
80 81 8.627208 TGGATCTAGAATAAATGGCTGAAATC 57.373 34.615 0.00 0.00 0.00 2.17
81 82 8.443176 TGGATCTAGAATAAATGGCTGAAATCT 58.557 33.333 0.00 0.00 0.00 2.40
82 83 9.950496 GGATCTAGAATAAATGGCTGAAATCTA 57.050 33.333 0.00 0.00 0.00 1.98
84 85 9.732130 ATCTAGAATAAATGGCTGAAATCTACC 57.268 33.333 0.00 0.00 0.00 3.18
85 86 6.867662 AGAATAAATGGCTGAAATCTACCG 57.132 37.500 0.00 0.00 0.00 4.02
86 87 5.239525 AGAATAAATGGCTGAAATCTACCGC 59.760 40.000 0.00 0.00 0.00 5.68
87 88 2.717639 AATGGCTGAAATCTACCGCT 57.282 45.000 0.00 0.00 0.00 5.52
88 89 3.838244 AATGGCTGAAATCTACCGCTA 57.162 42.857 0.00 0.00 0.00 4.26
89 90 2.596904 TGGCTGAAATCTACCGCTAC 57.403 50.000 0.00 0.00 0.00 3.58
90 91 1.828595 TGGCTGAAATCTACCGCTACA 59.171 47.619 0.00 0.00 0.00 2.74
91 92 2.159099 TGGCTGAAATCTACCGCTACAG 60.159 50.000 0.00 0.00 0.00 2.74
92 93 2.159085 GGCTGAAATCTACCGCTACAGT 60.159 50.000 0.00 0.00 0.00 3.55
93 94 3.522553 GCTGAAATCTACCGCTACAGTT 58.477 45.455 0.00 0.00 0.00 3.16
94 95 3.552294 GCTGAAATCTACCGCTACAGTTC 59.448 47.826 0.00 0.00 0.00 3.01
95 96 4.678309 GCTGAAATCTACCGCTACAGTTCT 60.678 45.833 0.00 0.00 0.00 3.01
96 97 5.401531 TGAAATCTACCGCTACAGTTCTT 57.598 39.130 0.00 0.00 0.00 2.52
97 98 6.519679 TGAAATCTACCGCTACAGTTCTTA 57.480 37.500 0.00 0.00 0.00 2.10
98 99 6.927416 TGAAATCTACCGCTACAGTTCTTAA 58.073 36.000 0.00 0.00 0.00 1.85
99 100 7.380536 TGAAATCTACCGCTACAGTTCTTAAA 58.619 34.615 0.00 0.00 0.00 1.52
100 101 7.330208 TGAAATCTACCGCTACAGTTCTTAAAC 59.670 37.037 0.00 0.00 35.50 2.01
101 102 5.710513 TCTACCGCTACAGTTCTTAAACA 57.289 39.130 0.00 0.00 37.88 2.83
102 103 5.706916 TCTACCGCTACAGTTCTTAAACAG 58.293 41.667 0.00 0.00 37.88 3.16
103 104 4.332428 ACCGCTACAGTTCTTAAACAGT 57.668 40.909 0.00 0.00 38.50 3.55
104 105 4.056050 ACCGCTACAGTTCTTAAACAGTG 58.944 43.478 0.00 0.00 36.03 3.66
105 106 4.056050 CCGCTACAGTTCTTAAACAGTGT 58.944 43.478 0.00 0.00 36.03 3.55
106 107 4.150098 CCGCTACAGTTCTTAAACAGTGTC 59.850 45.833 0.00 0.00 36.03 3.67
107 108 4.743151 CGCTACAGTTCTTAAACAGTGTCA 59.257 41.667 0.00 0.00 36.03 3.58
108 109 5.233476 CGCTACAGTTCTTAAACAGTGTCAA 59.767 40.000 0.00 0.00 36.03 3.18
109 110 6.419771 GCTACAGTTCTTAAACAGTGTCAAC 58.580 40.000 0.00 0.00 36.03 3.18
110 111 6.258068 GCTACAGTTCTTAAACAGTGTCAACT 59.742 38.462 0.00 0.00 36.03 3.16
119 120 2.533266 CAGTGTCAACTGCTACAGGT 57.467 50.000 0.00 0.00 46.98 4.00
120 121 3.660501 CAGTGTCAACTGCTACAGGTA 57.339 47.619 0.00 0.00 46.98 3.08
121 122 3.990092 CAGTGTCAACTGCTACAGGTAA 58.010 45.455 0.00 0.00 46.98 2.85
122 123 3.741344 CAGTGTCAACTGCTACAGGTAAC 59.259 47.826 0.00 0.00 46.98 2.50
123 124 3.386726 AGTGTCAACTGCTACAGGTAACA 59.613 43.478 0.00 0.00 35.51 2.41
124 125 4.124238 GTGTCAACTGCTACAGGTAACAA 58.876 43.478 0.00 0.00 35.51 2.83
125 126 4.573201 GTGTCAACTGCTACAGGTAACAAA 59.427 41.667 0.00 0.00 35.51 2.83
126 127 4.573201 TGTCAACTGCTACAGGTAACAAAC 59.427 41.667 0.00 0.00 35.51 2.93
127 128 4.573201 GTCAACTGCTACAGGTAACAAACA 59.427 41.667 0.00 0.00 35.51 2.83
128 129 4.814234 TCAACTGCTACAGGTAACAAACAG 59.186 41.667 0.00 0.00 35.51 3.16
129 130 4.417426 ACTGCTACAGGTAACAAACAGT 57.583 40.909 0.00 0.00 35.51 3.55
130 131 4.127171 ACTGCTACAGGTAACAAACAGTG 58.873 43.478 0.00 0.00 35.89 3.66
131 132 4.141801 ACTGCTACAGGTAACAAACAGTGA 60.142 41.667 0.00 0.00 35.89 3.41
132 133 4.968259 TGCTACAGGTAACAAACAGTGAT 58.032 39.130 0.00 0.00 41.41 3.06
133 134 5.373222 TGCTACAGGTAACAAACAGTGATT 58.627 37.500 0.00 0.00 41.41 2.57
134 135 5.825679 TGCTACAGGTAACAAACAGTGATTT 59.174 36.000 0.00 0.00 41.41 2.17
135 136 6.320164 TGCTACAGGTAACAAACAGTGATTTT 59.680 34.615 0.00 0.00 41.41 1.82
136 137 7.499563 TGCTACAGGTAACAAACAGTGATTTTA 59.500 33.333 0.00 0.00 41.41 1.52
137 138 8.015658 GCTACAGGTAACAAACAGTGATTTTAG 58.984 37.037 0.00 0.00 41.41 1.85
138 139 6.735130 ACAGGTAACAAACAGTGATTTTAGC 58.265 36.000 0.00 3.66 41.41 3.09
139 140 6.546034 ACAGGTAACAAACAGTGATTTTAGCT 59.454 34.615 0.00 5.72 41.41 3.32
140 141 7.717875 ACAGGTAACAAACAGTGATTTTAGCTA 59.282 33.333 0.00 0.00 41.41 3.32
141 142 8.015658 CAGGTAACAAACAGTGATTTTAGCTAC 58.984 37.037 0.00 0.00 41.41 3.58
142 143 7.717875 AGGTAACAAACAGTGATTTTAGCTACA 59.282 33.333 0.00 0.00 41.41 2.74
143 144 8.015658 GGTAACAAACAGTGATTTTAGCTACAG 58.984 37.037 0.00 0.00 0.00 2.74
144 145 7.568199 AACAAACAGTGATTTTAGCTACAGT 57.432 32.000 0.00 0.00 0.00 3.55
145 146 6.959361 ACAAACAGTGATTTTAGCTACAGTG 58.041 36.000 12.88 12.88 38.93 3.66
146 147 5.613358 AACAGTGATTTTAGCTACAGTGC 57.387 39.130 13.92 0.00 37.24 4.40
147 148 4.899502 ACAGTGATTTTAGCTACAGTGCT 58.100 39.130 13.92 3.44 46.11 4.40
148 149 4.932200 ACAGTGATTTTAGCTACAGTGCTC 59.068 41.667 13.92 0.00 42.97 4.26
149 150 4.032217 CAGTGATTTTAGCTACAGTGCTCG 59.968 45.833 0.00 0.00 42.97 5.03
150 151 3.927142 GTGATTTTAGCTACAGTGCTCGT 59.073 43.478 0.00 0.00 42.97 4.18
151 152 4.031878 GTGATTTTAGCTACAGTGCTCGTC 59.968 45.833 0.00 0.00 42.97 4.20
152 153 2.649331 TTTAGCTACAGTGCTCGTCC 57.351 50.000 0.00 0.00 42.97 4.79
153 154 1.541379 TTAGCTACAGTGCTCGTCCA 58.459 50.000 0.00 0.00 42.97 4.02
154 155 1.541379 TAGCTACAGTGCTCGTCCAA 58.459 50.000 0.00 0.00 42.97 3.53
155 156 0.679505 AGCTACAGTGCTCGTCCAAA 59.320 50.000 0.00 0.00 39.34 3.28
156 157 0.790814 GCTACAGTGCTCGTCCAAAC 59.209 55.000 0.00 0.00 0.00 2.93
157 158 1.872237 GCTACAGTGCTCGTCCAAACA 60.872 52.381 0.00 0.00 0.00 2.83
158 159 2.061773 CTACAGTGCTCGTCCAAACAG 58.938 52.381 0.00 0.00 0.00 3.16
159 160 0.178068 ACAGTGCTCGTCCAAACAGT 59.822 50.000 0.00 0.00 0.00 3.55
160 161 1.411246 ACAGTGCTCGTCCAAACAGTA 59.589 47.619 0.00 0.00 0.00 2.74
161 162 2.037251 ACAGTGCTCGTCCAAACAGTAT 59.963 45.455 0.00 0.00 0.00 2.12
162 163 2.413112 CAGTGCTCGTCCAAACAGTATG 59.587 50.000 0.00 0.00 46.00 2.39
163 164 1.128692 GTGCTCGTCCAAACAGTATGC 59.871 52.381 0.00 0.00 42.53 3.14
164 165 1.001974 TGCTCGTCCAAACAGTATGCT 59.998 47.619 0.00 0.00 42.53 3.79
165 166 2.232696 TGCTCGTCCAAACAGTATGCTA 59.767 45.455 0.00 0.00 42.53 3.49
166 167 2.603560 GCTCGTCCAAACAGTATGCTAC 59.396 50.000 0.00 0.00 42.53 3.58
167 168 3.845178 CTCGTCCAAACAGTATGCTACA 58.155 45.455 0.00 0.00 42.53 2.74
168 169 3.845178 TCGTCCAAACAGTATGCTACAG 58.155 45.455 0.00 0.00 42.53 2.74
169 170 2.348666 CGTCCAAACAGTATGCTACAGC 59.651 50.000 0.00 0.00 42.53 4.40
170 171 2.678336 GTCCAAACAGTATGCTACAGCC 59.322 50.000 0.00 0.00 42.53 4.85
171 172 2.017049 CCAAACAGTATGCTACAGCCC 58.983 52.381 0.00 0.00 42.53 5.19
172 173 2.017049 CAAACAGTATGCTACAGCCCC 58.983 52.381 0.00 0.00 42.53 5.80
173 174 1.285280 AACAGTATGCTACAGCCCCA 58.715 50.000 0.00 0.00 42.53 4.96
174 175 1.511613 ACAGTATGCTACAGCCCCAT 58.488 50.000 0.00 0.00 42.53 4.00
175 176 1.141657 ACAGTATGCTACAGCCCCATG 59.858 52.381 0.00 0.00 42.53 3.66
176 177 1.141657 CAGTATGCTACAGCCCCATGT 59.858 52.381 0.00 0.00 41.18 3.21
177 178 1.141657 AGTATGCTACAGCCCCATGTG 59.858 52.381 0.00 0.00 41.18 3.21
178 179 1.140852 GTATGCTACAGCCCCATGTGA 59.859 52.381 0.00 0.00 41.18 3.58
179 180 0.625316 ATGCTACAGCCCCATGTGAA 59.375 50.000 0.00 0.00 41.18 3.18
180 181 0.322456 TGCTACAGCCCCATGTGAAC 60.322 55.000 0.00 0.00 41.18 3.18
181 182 0.322456 GCTACAGCCCCATGTGAACA 60.322 55.000 0.00 0.00 34.56 3.18
182 183 1.742761 CTACAGCCCCATGTGAACAG 58.257 55.000 0.00 0.00 34.56 3.16
183 184 1.003580 CTACAGCCCCATGTGAACAGT 59.996 52.381 0.00 0.00 34.56 3.55
184 185 0.538057 ACAGCCCCATGTGAACAGTG 60.538 55.000 0.00 0.00 30.46 3.66
185 186 1.604593 AGCCCCATGTGAACAGTGC 60.605 57.895 0.00 0.00 0.00 4.40
186 187 1.902918 GCCCCATGTGAACAGTGCA 60.903 57.895 0.00 0.00 0.00 4.57
187 188 1.870055 GCCCCATGTGAACAGTGCAG 61.870 60.000 0.00 0.00 0.00 4.41
188 189 0.250858 CCCCATGTGAACAGTGCAGA 60.251 55.000 0.00 0.00 0.00 4.26
189 190 1.608055 CCCATGTGAACAGTGCAGAA 58.392 50.000 0.00 0.00 0.00 3.02
190 191 2.165167 CCCATGTGAACAGTGCAGAAT 58.835 47.619 0.00 0.00 0.00 2.40
191 192 2.163010 CCCATGTGAACAGTGCAGAATC 59.837 50.000 0.00 0.00 0.00 2.52
192 193 3.079578 CCATGTGAACAGTGCAGAATCT 58.920 45.455 0.00 0.00 0.00 2.40
193 194 3.504906 CCATGTGAACAGTGCAGAATCTT 59.495 43.478 0.00 0.00 0.00 2.40
194 195 4.473199 CATGTGAACAGTGCAGAATCTTG 58.527 43.478 0.00 0.00 0.00 3.02
195 196 2.880268 TGTGAACAGTGCAGAATCTTGG 59.120 45.455 0.00 0.00 0.00 3.61
196 197 1.881973 TGAACAGTGCAGAATCTTGGC 59.118 47.619 0.00 0.00 0.00 4.52
197 198 1.200948 GAACAGTGCAGAATCTTGGCC 59.799 52.381 0.00 0.00 0.00 5.36
198 199 0.111061 ACAGTGCAGAATCTTGGCCA 59.889 50.000 0.00 0.00 0.00 5.36
199 200 1.272313 ACAGTGCAGAATCTTGGCCAT 60.272 47.619 6.09 0.00 0.00 4.40
200 201 1.404391 CAGTGCAGAATCTTGGCCATC 59.596 52.381 6.09 0.00 0.00 3.51
201 202 1.284198 AGTGCAGAATCTTGGCCATCT 59.716 47.619 6.09 2.75 0.00 2.90
202 203 2.507058 AGTGCAGAATCTTGGCCATCTA 59.493 45.455 6.09 0.00 0.00 1.98
203 204 3.137913 AGTGCAGAATCTTGGCCATCTAT 59.862 43.478 6.09 0.00 0.00 1.98
204 205 3.887716 GTGCAGAATCTTGGCCATCTATT 59.112 43.478 6.09 6.87 0.00 1.73
205 206 4.340381 GTGCAGAATCTTGGCCATCTATTT 59.660 41.667 6.09 0.00 0.00 1.40
206 207 4.581824 TGCAGAATCTTGGCCATCTATTTC 59.418 41.667 6.09 6.30 0.00 2.17
207 208 4.022503 GCAGAATCTTGGCCATCTATTTCC 60.023 45.833 6.09 0.00 0.00 3.13
208 209 4.522022 CAGAATCTTGGCCATCTATTTCCC 59.478 45.833 6.09 0.00 0.00 3.97
209 210 4.168675 AGAATCTTGGCCATCTATTTCCCA 59.831 41.667 6.09 0.00 0.00 4.37
210 211 4.754411 ATCTTGGCCATCTATTTCCCAT 57.246 40.909 6.09 0.00 0.00 4.00
211 212 4.104383 TCTTGGCCATCTATTTCCCATC 57.896 45.455 6.09 0.00 0.00 3.51
212 213 3.723681 TCTTGGCCATCTATTTCCCATCT 59.276 43.478 6.09 0.00 0.00 2.90
213 214 3.513909 TGGCCATCTATTTCCCATCTG 57.486 47.619 0.00 0.00 0.00 2.90
214 215 3.055328 TGGCCATCTATTTCCCATCTGA 58.945 45.455 0.00 0.00 0.00 3.27
215 216 3.659195 TGGCCATCTATTTCCCATCTGAT 59.341 43.478 0.00 0.00 0.00 2.90
216 217 4.015084 GGCCATCTATTTCCCATCTGATG 58.985 47.826 10.71 10.71 0.00 3.07
227 228 3.623906 CCATCTGATGGTTCACAGACT 57.376 47.619 25.34 0.00 45.54 3.24
228 229 4.743057 CCATCTGATGGTTCACAGACTA 57.257 45.455 25.34 0.00 45.54 2.59
229 230 5.089970 CCATCTGATGGTTCACAGACTAA 57.910 43.478 25.34 0.00 45.54 2.24
230 231 5.114780 CCATCTGATGGTTCACAGACTAAG 58.885 45.833 25.34 0.00 45.54 2.18
231 232 5.337894 CCATCTGATGGTTCACAGACTAAGT 60.338 44.000 25.34 0.00 45.54 2.24
232 233 5.808366 TCTGATGGTTCACAGACTAAGTT 57.192 39.130 0.00 0.00 38.08 2.66
233 234 6.911250 TCTGATGGTTCACAGACTAAGTTA 57.089 37.500 0.00 0.00 38.08 2.24
234 235 6.925211 TCTGATGGTTCACAGACTAAGTTAG 58.075 40.000 8.41 8.41 38.08 2.34
235 236 6.037786 TGATGGTTCACAGACTAAGTTAGG 57.962 41.667 14.36 0.00 0.00 2.69
236 237 4.884668 TGGTTCACAGACTAAGTTAGGG 57.115 45.455 14.36 6.00 0.00 3.53
237 238 4.228824 TGGTTCACAGACTAAGTTAGGGT 58.771 43.478 14.36 6.59 0.00 4.34
238 239 5.396485 TGGTTCACAGACTAAGTTAGGGTA 58.604 41.667 14.36 0.00 0.00 3.69
239 240 6.021030 TGGTTCACAGACTAAGTTAGGGTAT 58.979 40.000 14.36 0.00 0.00 2.73
240 241 6.499350 TGGTTCACAGACTAAGTTAGGGTATT 59.501 38.462 14.36 0.00 0.00 1.89
241 242 7.675195 TGGTTCACAGACTAAGTTAGGGTATTA 59.325 37.037 14.36 0.00 0.00 0.98
242 243 8.702819 GGTTCACAGACTAAGTTAGGGTATTAT 58.297 37.037 14.36 0.00 0.00 1.28
246 247 9.543783 CACAGACTAAGTTAGGGTATTATTTCC 57.456 37.037 14.36 0.00 0.00 3.13
247 248 8.712103 ACAGACTAAGTTAGGGTATTATTTCCC 58.288 37.037 14.36 0.00 43.71 3.97
258 259 7.803279 GGGTATTATTTCCCTAACTTCACAG 57.197 40.000 0.00 0.00 40.48 3.66
259 260 7.344134 GGGTATTATTTCCCTAACTTCACAGT 58.656 38.462 0.00 0.00 40.48 3.55
260 261 8.488668 GGGTATTATTTCCCTAACTTCACAGTA 58.511 37.037 0.00 0.00 40.48 2.74
261 262 9.543783 GGTATTATTTCCCTAACTTCACAGTAG 57.456 37.037 0.00 0.00 30.68 2.57
262 263 9.043079 GTATTATTTCCCTAACTTCACAGTAGC 57.957 37.037 0.00 0.00 30.68 3.58
263 264 5.763876 ATTTCCCTAACTTCACAGTAGCT 57.236 39.130 0.00 0.00 30.68 3.32
264 265 6.869206 ATTTCCCTAACTTCACAGTAGCTA 57.131 37.500 0.00 0.00 30.68 3.32
265 266 6.675413 TTTCCCTAACTTCACAGTAGCTAA 57.325 37.500 0.00 0.00 30.68 3.09
266 267 5.916661 TCCCTAACTTCACAGTAGCTAAG 57.083 43.478 0.00 0.00 30.68 2.18
267 268 5.331069 TCCCTAACTTCACAGTAGCTAAGT 58.669 41.667 0.00 0.00 33.72 2.24
268 269 5.778750 TCCCTAACTTCACAGTAGCTAAGTT 59.221 40.000 13.13 13.13 42.91 2.66
269 270 6.950041 TCCCTAACTTCACAGTAGCTAAGTTA 59.050 38.462 13.81 13.81 41.22 2.24
273 274 6.518208 ACTTCACAGTAGCTAAGTTAGAGG 57.482 41.667 14.27 0.47 0.00 3.69
274 275 6.246919 ACTTCACAGTAGCTAAGTTAGAGGA 58.753 40.000 14.27 0.00 0.00 3.71
275 276 6.376018 ACTTCACAGTAGCTAAGTTAGAGGAG 59.624 42.308 14.27 1.83 0.00 3.69
276 277 4.641094 TCACAGTAGCTAAGTTAGAGGAGC 59.359 45.833 14.27 0.00 35.07 4.70
277 278 3.955551 ACAGTAGCTAAGTTAGAGGAGCC 59.044 47.826 14.27 0.00 35.45 4.70
278 279 3.954904 CAGTAGCTAAGTTAGAGGAGCCA 59.045 47.826 14.27 0.00 35.45 4.75
279 280 4.037446 CAGTAGCTAAGTTAGAGGAGCCAG 59.963 50.000 14.27 0.00 35.45 4.85
280 281 3.108847 AGCTAAGTTAGAGGAGCCAGT 57.891 47.619 14.27 0.00 35.45 4.00
281 282 3.445987 AGCTAAGTTAGAGGAGCCAGTT 58.554 45.455 14.27 0.00 35.45 3.16
282 283 3.449377 AGCTAAGTTAGAGGAGCCAGTTC 59.551 47.826 14.27 0.00 35.45 3.01
283 284 3.431068 GCTAAGTTAGAGGAGCCAGTTCC 60.431 52.174 14.27 0.00 37.52 3.62
284 285 1.574263 AGTTAGAGGAGCCAGTTCCC 58.426 55.000 0.00 0.00 38.02 3.97
285 286 1.203313 AGTTAGAGGAGCCAGTTCCCA 60.203 52.381 0.00 0.00 38.02 4.37
286 287 1.628846 GTTAGAGGAGCCAGTTCCCAA 59.371 52.381 0.00 0.00 38.02 4.12
496 499 7.025963 GGAGCAGTTTTGTCTTATTTCATGAG 58.974 38.462 0.00 0.00 0.00 2.90
661 667 3.900966 TGCTCATAGTGCATTCAGTCT 57.099 42.857 0.00 0.00 35.31 3.24
671 677 1.800805 CATTCAGTCTCGCTTGTGGT 58.199 50.000 0.00 0.00 0.00 4.16
791 798 1.471119 CAGGAAGTCTACGTGGCCTA 58.529 55.000 3.32 0.00 0.00 3.93
839 846 0.319083 ACCGACGGCACAGATAAACA 59.681 50.000 15.39 0.00 0.00 2.83
911 918 1.248486 GAAGCAACCCCTCCTCAAAC 58.752 55.000 0.00 0.00 0.00 2.93
921 928 0.035458 CTCCTCAAACGGCAACTCCT 59.965 55.000 0.00 0.00 0.00 3.69
1032 1039 0.121197 TCTTCTCCACCCCCTTCCAT 59.879 55.000 0.00 0.00 0.00 3.41
1038 1045 0.403453 CCACCCCCTTCCATCCCTAT 60.403 60.000 0.00 0.00 0.00 2.57
1095 1102 1.721664 TTCTCGTCCCCGCGTAGATG 61.722 60.000 4.92 6.94 0.00 2.90
1161 1168 2.899339 GCTCTGCTCCCGATTGGC 60.899 66.667 0.00 0.00 0.00 4.52
1162 1169 2.203126 CTCTGCTCCCGATTGGCC 60.203 66.667 0.00 0.00 0.00 5.36
1188 1195 4.305769 CCTCTCATGATCTGATTCGGTTC 58.694 47.826 0.00 0.00 32.10 3.62
1205 1212 0.535328 TTCGAATTGCGTGGTTCCCA 60.535 50.000 0.00 0.00 41.80 4.37
1267 1274 2.440599 GGTGGGGATGTGCAGGTT 59.559 61.111 0.00 0.00 0.00 3.50
1324 1331 6.014242 TCGCCTGTTCTATATTCAGATGGATT 60.014 38.462 0.00 0.00 0.00 3.01
1383 1393 2.352127 GCTTTTCAGGTGATGGTGAAGC 60.352 50.000 0.00 0.00 34.25 3.86
1426 1436 3.782656 ACCAGGTAATTGAACCGACTT 57.217 42.857 0.00 0.00 44.77 3.01
1441 1451 1.657538 CGACTTGTTTCTGTTCTGCGC 60.658 52.381 0.00 0.00 0.00 6.09
1719 1730 4.393834 TGTTACTGCAAGGTGCTTTATCA 58.606 39.130 1.43 0.00 45.31 2.15
1721 1732 2.862541 ACTGCAAGGTGCTTTATCACA 58.137 42.857 1.43 0.00 45.31 3.58
1775 1811 3.365364 GCTCATAGAGGTTGTTTGTGTGC 60.365 47.826 0.00 0.00 0.00 4.57
1900 1953 6.069847 CCATTTCTTGGTAGGTTAACTAGGGA 60.070 42.308 5.42 0.00 40.99 4.20
1908 1961 3.217626 AGGTTAACTAGGGACGTATCGG 58.782 50.000 5.42 0.00 0.00 4.18
2085 2246 1.807573 GGCGACGAAGCAGGAAGAG 60.808 63.158 0.00 0.00 39.27 2.85
2413 2600 5.296748 CCGATAATTTGGCCTTTTATTGGG 58.703 41.667 20.65 14.42 34.93 4.12
2499 2714 0.817634 TGCCGTGCAGCAGTTAACTT 60.818 50.000 5.07 0.00 38.00 2.66
2510 2726 6.592220 TGCAGCAGTTAACTTTCGTGATATTA 59.408 34.615 5.07 0.00 0.00 0.98
2741 2957 9.425577 GATACTGCCTGTTAGTATATCTTTTCC 57.574 37.037 0.00 0.00 40.46 3.13
2796 3012 8.672815 GCTTCATCTTCTATTTTTCAGCTTAGT 58.327 33.333 0.00 0.00 0.00 2.24
2805 3021 9.561069 TCTATTTTTCAGCTTAGTTCTGAGTTT 57.439 29.630 0.00 0.00 41.10 2.66
2862 3240 8.205512 TGCTCATGCCAATTACATCATTATTTT 58.794 29.630 0.00 0.00 38.71 1.82
2982 3360 4.161333 GCAGACATTGAATTTTCGTCCTG 58.839 43.478 0.00 0.00 0.00 3.86
3339 3717 8.885494 ATTATCTTGAAGTCTGTAATCTGCTC 57.115 34.615 0.00 0.00 0.00 4.26
3445 3823 0.391130 GTACAGTTGATCAGCGGCCA 60.391 55.000 9.49 0.00 0.00 5.36
3903 4308 3.329520 TGTTGGCATGGGAGTACTTAGTT 59.670 43.478 0.00 0.00 0.00 2.24
3912 4317 5.516044 TGGGAGTACTTAGTTCAGCATCTA 58.484 41.667 0.00 0.00 0.00 1.98
3947 4352 6.475402 ACTTGCAGTATTTTGTGTTAAACTGC 59.525 34.615 16.17 16.17 46.45 4.40
4205 4613 5.180117 CCACCATCAACTTTCAGTTACAGAG 59.820 44.000 0.00 0.00 36.03 3.35
4258 4666 0.608640 CGGGGTGAGTATATCCTGCC 59.391 60.000 0.00 0.00 0.00 4.85
4263 4671 3.501385 GGGTGAGTATATCCTGCCTCTCT 60.501 52.174 0.00 0.00 0.00 3.10
4272 4680 8.592809 AGTATATCCTGCCTCTCTTTTTCATAG 58.407 37.037 0.00 0.00 0.00 2.23
4280 4692 7.099764 TGCCTCTCTTTTTCATAGTAGTTCAG 58.900 38.462 0.00 0.00 0.00 3.02
4324 4736 7.969536 TTGTGTTGAAATTTCCTTTGTTTCA 57.030 28.000 15.48 0.00 39.36 2.69
4451 4866 1.003545 CGCATCGCAAGGTAAGAATGG 60.004 52.381 0.00 0.00 38.47 3.16
4455 4870 0.451783 CGCAAGGTAAGAATGGTGCC 59.548 55.000 0.00 0.00 0.00 5.01
4566 4981 0.622665 CCCCAAGCCTGAGAGACAAT 59.377 55.000 0.00 0.00 0.00 2.71
4587 5002 3.192944 TCCCAGGTTCTTCATCCAGATT 58.807 45.455 0.00 0.00 0.00 2.40
4709 5135 5.053978 AGGATGTTGGAAGAGTCAAAGTT 57.946 39.130 0.00 0.00 0.00 2.66
4710 5136 4.823989 AGGATGTTGGAAGAGTCAAAGTTG 59.176 41.667 0.00 0.00 0.00 3.16
4711 5137 4.580580 GGATGTTGGAAGAGTCAAAGTTGT 59.419 41.667 0.00 0.00 0.00 3.32
4712 5138 5.067805 GGATGTTGGAAGAGTCAAAGTTGTT 59.932 40.000 0.00 0.00 0.00 2.83
4713 5139 5.309323 TGTTGGAAGAGTCAAAGTTGTTG 57.691 39.130 0.00 0.00 0.00 3.33
4714 5140 4.105486 GTTGGAAGAGTCAAAGTTGTTGC 58.895 43.478 0.00 0.00 0.00 4.17
4715 5141 3.351740 TGGAAGAGTCAAAGTTGTTGCA 58.648 40.909 0.00 0.00 0.00 4.08
4716 5142 3.128589 TGGAAGAGTCAAAGTTGTTGCAC 59.871 43.478 0.00 0.00 0.00 4.57
4717 5143 3.489229 GGAAGAGTCAAAGTTGTTGCACC 60.489 47.826 0.00 0.00 0.00 5.01
4718 5144 3.004752 AGAGTCAAAGTTGTTGCACCT 57.995 42.857 0.00 0.00 0.00 4.00
4719 5145 3.356290 AGAGTCAAAGTTGTTGCACCTT 58.644 40.909 0.00 0.00 0.00 3.50
4720 5146 4.523083 AGAGTCAAAGTTGTTGCACCTTA 58.477 39.130 0.00 0.00 0.00 2.69
4721 5147 4.335594 AGAGTCAAAGTTGTTGCACCTTAC 59.664 41.667 0.00 0.00 0.00 2.34
4722 5148 4.013728 AGTCAAAGTTGTTGCACCTTACA 58.986 39.130 0.00 0.00 0.00 2.41
4723 5149 4.096382 AGTCAAAGTTGTTGCACCTTACAG 59.904 41.667 0.00 0.00 0.00 2.74
4724 5150 4.095782 GTCAAAGTTGTTGCACCTTACAGA 59.904 41.667 0.00 0.00 0.00 3.41
4725 5151 4.702612 TCAAAGTTGTTGCACCTTACAGAA 59.297 37.500 0.00 0.00 0.00 3.02
4726 5152 4.632538 AAGTTGTTGCACCTTACAGAAC 57.367 40.909 0.00 0.00 0.00 3.01
4727 5153 2.949644 AGTTGTTGCACCTTACAGAACC 59.050 45.455 0.00 0.00 0.00 3.62
4728 5154 1.975660 TGTTGCACCTTACAGAACCC 58.024 50.000 0.00 0.00 0.00 4.11
4731 5157 0.770557 TGCACCTTACAGAACCCCCT 60.771 55.000 0.00 0.00 0.00 4.79
4735 5161 0.253207 CCTTACAGAACCCCCTCCCT 60.253 60.000 0.00 0.00 0.00 4.20
4736 5162 1.205055 CTTACAGAACCCCCTCCCTC 58.795 60.000 0.00 0.00 0.00 4.30
4740 5166 2.367107 GAACCCCCTCCCTCCCTC 60.367 72.222 0.00 0.00 0.00 4.30
4914 5637 4.690748 CACAGCATAGGGTGAATATTACCG 59.309 45.833 14.26 0.00 45.29 4.02
4985 5711 6.017605 GGTGTATTTCTGTGCTCCATATCTTG 60.018 42.308 0.00 0.00 0.00 3.02
5022 5748 6.515862 GCTCGTATATCTGAATCCACTGTCTT 60.516 42.308 0.00 0.00 0.00 3.01
5108 5839 2.045045 TGCCGGCTTTGCTATGCT 60.045 55.556 29.70 0.00 0.00 3.79
5172 6096 4.638963 GAAGTTTCCAATAAGAACTCGCG 58.361 43.478 0.00 0.00 32.79 5.87
5250 6207 7.052142 AGGTAAATTTAGGTGAGATCGTAGG 57.948 40.000 0.00 0.00 0.00 3.18
5296 6253 6.801539 TGACCTTGCAGATAAGTTTACAAG 57.198 37.500 0.00 0.00 35.43 3.16
5302 6259 6.554334 TGCAGATAAGTTTACAAGTCCAAC 57.446 37.500 0.00 0.00 0.00 3.77
5303 6260 5.178623 TGCAGATAAGTTTACAAGTCCAACG 59.821 40.000 0.00 0.00 0.00 4.10
5311 6268 6.053005 AGTTTACAAGTCCAACGAAATCAGA 58.947 36.000 0.00 0.00 0.00 3.27
5333 6290 7.122204 TCAGATCCAAACTCGATCTACAGTAAA 59.878 37.037 0.25 0.00 43.66 2.01
5340 6297 8.596380 CAAACTCGATCTACAGTAAAAGATTCC 58.404 37.037 0.00 0.00 32.60 3.01
5345 6303 9.496873 TCGATCTACAGTAAAAGATTCCAAAAA 57.503 29.630 0.00 0.00 32.60 1.94
5379 6337 1.176527 TGAATAGTGCCAGCTTTGCC 58.823 50.000 2.68 0.00 0.00 4.52
5393 6351 5.039333 CAGCTTTGCCTGAATAGTATTTGC 58.961 41.667 0.00 2.04 34.77 3.68
5417 6375 6.350445 GCCACTATTCACATCCAATTTTGTCT 60.350 38.462 0.00 0.00 0.00 3.41
5446 6404 5.591877 TGGTTCTCTATAAGGGTAGTTCGAC 59.408 44.000 0.00 0.00 0.00 4.20
5465 6423 5.411781 TCGACTTAGGAGCTGAAATTCTTC 58.588 41.667 0.00 0.00 0.00 2.87
5477 6435 5.867716 GCTGAAATTCTTCGAGGTTGTACTA 59.132 40.000 0.00 0.00 33.94 1.82
5482 6440 5.970317 TTCTTCGAGGTTGTACTACATCA 57.030 39.130 19.23 6.55 0.00 3.07
5484 6442 6.335471 TCTTCGAGGTTGTACTACATCAAA 57.665 37.500 19.23 8.70 0.00 2.69
5485 6443 6.154445 TCTTCGAGGTTGTACTACATCAAAC 58.846 40.000 19.23 2.74 0.00 2.93
5486 6444 5.456548 TCGAGGTTGTACTACATCAAACA 57.543 39.130 19.23 0.84 34.18 2.83
5487 6445 5.224888 TCGAGGTTGTACTACATCAAACAC 58.775 41.667 19.23 0.00 34.18 3.32
5489 6447 5.118664 CGAGGTTGTACTACATCAAACACAG 59.881 44.000 19.23 0.99 34.18 3.66
5490 6448 6.169557 AGGTTGTACTACATCAAACACAGA 57.830 37.500 9.65 0.00 34.18 3.41
5565 6767 7.693969 AAAAGATTGATCTCATCGAAGGTTT 57.306 32.000 0.00 0.00 35.76 3.27
5596 6798 2.046604 GGGTTGACCGCTGGTACC 60.047 66.667 4.43 4.43 35.25 3.34
5607 6809 2.038329 TGGTACCGGAGAGTGGGG 59.962 66.667 9.46 0.00 0.00 4.96
5613 6815 4.715130 CGGAGAGTGGGGGTGGGA 62.715 72.222 0.00 0.00 0.00 4.37
5638 6840 3.022406 GAGGCTTTAGAGGGTTAGTCGA 58.978 50.000 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.367444 GCTTCTAACTTCACAATAGCTAAGTTA 57.633 33.333 13.81 13.81 41.22 2.24
6 7 6.819146 GGCTTCTAACTTCACAATAGCTAAGT 59.181 38.462 0.00 0.00 33.72 2.24
7 8 7.044798 AGGCTTCTAACTTCACAATAGCTAAG 58.955 38.462 0.00 0.00 0.00 2.18
8 9 6.947464 AGGCTTCTAACTTCACAATAGCTAA 58.053 36.000 0.00 0.00 0.00 3.09
9 10 6.546428 AGGCTTCTAACTTCACAATAGCTA 57.454 37.500 0.00 0.00 0.00 3.32
10 11 5.428184 AGGCTTCTAACTTCACAATAGCT 57.572 39.130 0.00 0.00 0.00 3.32
11 12 7.006187 GTTAGGCTTCTAACTTCACAATAGC 57.994 40.000 0.00 0.00 45.65 2.97
30 31 4.273480 CGGATGAAATGTGGCTAAGTTAGG 59.727 45.833 11.84 0.00 0.00 2.69
31 32 4.876107 ACGGATGAAATGTGGCTAAGTTAG 59.124 41.667 5.47 5.47 0.00 2.34
32 33 4.839121 ACGGATGAAATGTGGCTAAGTTA 58.161 39.130 0.00 0.00 0.00 2.24
33 34 3.686016 ACGGATGAAATGTGGCTAAGTT 58.314 40.909 0.00 0.00 0.00 2.66
34 35 3.350219 ACGGATGAAATGTGGCTAAGT 57.650 42.857 0.00 0.00 0.00 2.24
35 36 3.181497 CCAACGGATGAAATGTGGCTAAG 60.181 47.826 0.00 0.00 0.00 2.18
36 37 2.752354 CCAACGGATGAAATGTGGCTAA 59.248 45.455 0.00 0.00 0.00 3.09
37 38 2.026729 TCCAACGGATGAAATGTGGCTA 60.027 45.455 0.00 0.00 0.00 3.93
38 39 1.176527 CCAACGGATGAAATGTGGCT 58.823 50.000 0.00 0.00 0.00 4.75
39 40 1.173043 TCCAACGGATGAAATGTGGC 58.827 50.000 0.00 0.00 0.00 5.01
40 41 3.282021 AGATCCAACGGATGAAATGTGG 58.718 45.455 0.00 0.00 43.27 4.17
41 42 5.359756 TCTAGATCCAACGGATGAAATGTG 58.640 41.667 0.00 0.00 43.27 3.21
42 43 5.614324 TCTAGATCCAACGGATGAAATGT 57.386 39.130 0.00 0.00 43.27 2.71
43 44 8.607441 TTATTCTAGATCCAACGGATGAAATG 57.393 34.615 0.00 0.00 43.27 2.32
44 45 9.799106 ATTTATTCTAGATCCAACGGATGAAAT 57.201 29.630 0.00 0.00 43.27 2.17
45 46 9.056005 CATTTATTCTAGATCCAACGGATGAAA 57.944 33.333 0.00 0.00 43.27 2.69
46 47 7.661437 CCATTTATTCTAGATCCAACGGATGAA 59.339 37.037 0.00 0.00 43.27 2.57
47 48 7.161404 CCATTTATTCTAGATCCAACGGATGA 58.839 38.462 0.00 0.00 43.27 2.92
48 49 6.128172 GCCATTTATTCTAGATCCAACGGATG 60.128 42.308 0.00 0.00 43.27 3.51
49 50 5.940470 GCCATTTATTCTAGATCCAACGGAT 59.060 40.000 0.00 0.00 46.28 4.18
50 51 5.071788 AGCCATTTATTCTAGATCCAACGGA 59.928 40.000 0.00 0.00 35.55 4.69
51 52 5.180117 CAGCCATTTATTCTAGATCCAACGG 59.820 44.000 0.00 0.00 0.00 4.44
52 53 5.991606 TCAGCCATTTATTCTAGATCCAACG 59.008 40.000 0.00 0.00 0.00 4.10
53 54 7.807977 TTCAGCCATTTATTCTAGATCCAAC 57.192 36.000 0.00 0.00 0.00 3.77
54 55 9.071276 GATTTCAGCCATTTATTCTAGATCCAA 57.929 33.333 0.00 0.00 0.00 3.53
55 56 8.443176 AGATTTCAGCCATTTATTCTAGATCCA 58.557 33.333 0.00 0.00 0.00 3.41
56 57 8.860780 AGATTTCAGCCATTTATTCTAGATCC 57.139 34.615 0.00 0.00 0.00 3.36
58 59 9.732130 GGTAGATTTCAGCCATTTATTCTAGAT 57.268 33.333 0.00 0.00 0.00 1.98
59 60 7.872993 CGGTAGATTTCAGCCATTTATTCTAGA 59.127 37.037 0.00 0.00 0.00 2.43
60 61 7.360438 GCGGTAGATTTCAGCCATTTATTCTAG 60.360 40.741 0.00 0.00 0.00 2.43
61 62 6.426937 GCGGTAGATTTCAGCCATTTATTCTA 59.573 38.462 0.00 0.00 0.00 2.10
62 63 5.239525 GCGGTAGATTTCAGCCATTTATTCT 59.760 40.000 0.00 0.00 0.00 2.40
63 64 5.239525 AGCGGTAGATTTCAGCCATTTATTC 59.760 40.000 0.00 0.00 0.00 1.75
64 65 5.133221 AGCGGTAGATTTCAGCCATTTATT 58.867 37.500 0.00 0.00 0.00 1.40
65 66 4.718961 AGCGGTAGATTTCAGCCATTTAT 58.281 39.130 0.00 0.00 0.00 1.40
66 67 4.150897 AGCGGTAGATTTCAGCCATTTA 57.849 40.909 0.00 0.00 0.00 1.40
67 68 3.004752 AGCGGTAGATTTCAGCCATTT 57.995 42.857 0.00 0.00 0.00 2.32
68 69 2.717639 AGCGGTAGATTTCAGCCATT 57.282 45.000 0.00 0.00 0.00 3.16
69 70 2.434336 TGTAGCGGTAGATTTCAGCCAT 59.566 45.455 0.00 0.00 0.00 4.40
70 71 1.828595 TGTAGCGGTAGATTTCAGCCA 59.171 47.619 0.00 0.00 0.00 4.75
71 72 2.159085 ACTGTAGCGGTAGATTTCAGCC 60.159 50.000 8.58 0.00 0.00 4.85
72 73 3.166489 ACTGTAGCGGTAGATTTCAGC 57.834 47.619 8.58 0.00 0.00 4.26
73 74 5.000012 AGAACTGTAGCGGTAGATTTCAG 58.000 43.478 19.26 13.70 0.00 3.02
74 75 5.401531 AAGAACTGTAGCGGTAGATTTCA 57.598 39.130 19.26 3.77 0.00 2.69
75 76 7.330208 TGTTTAAGAACTGTAGCGGTAGATTTC 59.670 37.037 12.17 12.17 36.70 2.17
76 77 7.156673 TGTTTAAGAACTGTAGCGGTAGATTT 58.843 34.615 0.00 0.00 36.70 2.17
77 78 6.694447 TGTTTAAGAACTGTAGCGGTAGATT 58.306 36.000 0.00 0.00 36.70 2.40
78 79 6.071503 ACTGTTTAAGAACTGTAGCGGTAGAT 60.072 38.462 0.00 0.00 43.43 1.98
79 80 5.242393 ACTGTTTAAGAACTGTAGCGGTAGA 59.758 40.000 0.00 0.00 43.43 2.59
80 81 5.345202 CACTGTTTAAGAACTGTAGCGGTAG 59.655 44.000 0.00 0.00 43.41 3.18
81 82 5.221303 ACACTGTTTAAGAACTGTAGCGGTA 60.221 40.000 0.00 0.00 43.41 4.02
82 83 4.056050 CACTGTTTAAGAACTGTAGCGGT 58.944 43.478 0.00 0.00 43.41 5.68
83 84 4.056050 ACACTGTTTAAGAACTGTAGCGG 58.944 43.478 2.27 0.00 43.41 5.52
84 85 4.743151 TGACACTGTTTAAGAACTGTAGCG 59.257 41.667 2.27 0.00 43.41 4.26
85 86 6.258068 AGTTGACACTGTTTAAGAACTGTAGC 59.742 38.462 2.27 0.00 43.41 3.58
86 87 7.621991 CAGTTGACACTGTTTAAGAACTGTAG 58.378 38.462 0.00 1.45 44.96 2.74
87 88 7.534085 CAGTTGACACTGTTTAAGAACTGTA 57.466 36.000 0.00 0.00 44.96 2.74
88 89 6.422776 CAGTTGACACTGTTTAAGAACTGT 57.577 37.500 0.00 0.00 44.96 3.55
101 102 3.386726 TGTTACCTGTAGCAGTTGACACT 59.613 43.478 0.00 0.00 0.00 3.55
102 103 3.724374 TGTTACCTGTAGCAGTTGACAC 58.276 45.455 0.00 0.00 0.00 3.67
103 104 4.409718 TTGTTACCTGTAGCAGTTGACA 57.590 40.909 0.00 0.00 0.00 3.58
104 105 4.573201 TGTTTGTTACCTGTAGCAGTTGAC 59.427 41.667 0.00 0.00 0.00 3.18
105 106 4.771903 TGTTTGTTACCTGTAGCAGTTGA 58.228 39.130 0.00 0.00 0.00 3.18
106 107 4.574828 ACTGTTTGTTACCTGTAGCAGTTG 59.425 41.667 0.00 0.00 32.84 3.16
107 108 4.574828 CACTGTTTGTTACCTGTAGCAGTT 59.425 41.667 0.00 0.00 34.25 3.16
108 109 4.127171 CACTGTTTGTTACCTGTAGCAGT 58.873 43.478 0.00 0.00 36.53 4.40
109 110 4.377021 TCACTGTTTGTTACCTGTAGCAG 58.623 43.478 0.00 0.00 0.00 4.24
110 111 4.409718 TCACTGTTTGTTACCTGTAGCA 57.590 40.909 0.00 0.00 0.00 3.49
111 112 5.941948 AATCACTGTTTGTTACCTGTAGC 57.058 39.130 0.00 0.00 0.00 3.58
112 113 8.015658 GCTAAAATCACTGTTTGTTACCTGTAG 58.984 37.037 0.00 0.00 0.00 2.74
113 114 7.717875 AGCTAAAATCACTGTTTGTTACCTGTA 59.282 33.333 0.00 0.00 0.00 2.74
114 115 6.546034 AGCTAAAATCACTGTTTGTTACCTGT 59.454 34.615 0.00 0.00 0.00 4.00
115 116 6.970484 AGCTAAAATCACTGTTTGTTACCTG 58.030 36.000 0.00 0.00 0.00 4.00
116 117 7.717875 TGTAGCTAAAATCACTGTTTGTTACCT 59.282 33.333 0.00 0.00 0.00 3.08
117 118 7.867752 TGTAGCTAAAATCACTGTTTGTTACC 58.132 34.615 0.00 0.00 0.00 2.85
118 119 8.557029 ACTGTAGCTAAAATCACTGTTTGTTAC 58.443 33.333 0.00 0.00 0.00 2.50
119 120 8.556194 CACTGTAGCTAAAATCACTGTTTGTTA 58.444 33.333 0.00 0.00 0.00 2.41
120 121 7.417612 CACTGTAGCTAAAATCACTGTTTGTT 58.582 34.615 0.00 0.00 0.00 2.83
121 122 6.513393 GCACTGTAGCTAAAATCACTGTTTGT 60.513 38.462 0.00 0.00 0.00 2.83
122 123 5.853282 GCACTGTAGCTAAAATCACTGTTTG 59.147 40.000 0.00 0.00 0.00 2.93
123 124 5.765182 AGCACTGTAGCTAAAATCACTGTTT 59.235 36.000 0.00 0.00 44.50 2.83
124 125 5.308825 AGCACTGTAGCTAAAATCACTGTT 58.691 37.500 0.00 0.00 44.50 3.16
125 126 4.899502 AGCACTGTAGCTAAAATCACTGT 58.100 39.130 0.00 0.00 44.50 3.55
126 127 4.032217 CGAGCACTGTAGCTAAAATCACTG 59.968 45.833 0.00 0.00 46.75 3.66
127 128 4.177026 CGAGCACTGTAGCTAAAATCACT 58.823 43.478 0.00 0.00 46.75 3.41
128 129 3.927142 ACGAGCACTGTAGCTAAAATCAC 59.073 43.478 0.00 0.00 46.75 3.06
129 130 4.174009 GACGAGCACTGTAGCTAAAATCA 58.826 43.478 0.00 0.00 46.75 2.57
130 131 3.552294 GGACGAGCACTGTAGCTAAAATC 59.448 47.826 0.00 0.00 46.75 2.17
131 132 3.056107 TGGACGAGCACTGTAGCTAAAAT 60.056 43.478 0.00 0.00 46.75 1.82
132 133 2.297880 TGGACGAGCACTGTAGCTAAAA 59.702 45.455 0.00 0.00 46.75 1.52
133 134 1.890489 TGGACGAGCACTGTAGCTAAA 59.110 47.619 0.00 0.00 46.75 1.85
134 135 1.541379 TGGACGAGCACTGTAGCTAA 58.459 50.000 0.00 0.00 46.75 3.09
135 136 1.541379 TTGGACGAGCACTGTAGCTA 58.459 50.000 5.03 0.00 46.75 3.32
137 138 0.790814 GTTTGGACGAGCACTGTAGC 59.209 55.000 0.00 0.00 0.00 3.58
138 139 2.061773 CTGTTTGGACGAGCACTGTAG 58.938 52.381 0.00 0.00 0.00 2.74
139 140 1.411246 ACTGTTTGGACGAGCACTGTA 59.589 47.619 0.00 0.00 0.00 2.74
140 141 0.178068 ACTGTTTGGACGAGCACTGT 59.822 50.000 0.00 0.00 0.00 3.55
141 142 2.148916 TACTGTTTGGACGAGCACTG 57.851 50.000 0.00 0.00 0.00 3.66
142 143 2.688507 CATACTGTTTGGACGAGCACT 58.311 47.619 0.00 0.00 0.00 4.40
143 144 1.128692 GCATACTGTTTGGACGAGCAC 59.871 52.381 0.00 0.00 0.00 4.40
144 145 1.001974 AGCATACTGTTTGGACGAGCA 59.998 47.619 0.00 0.00 0.00 4.26
145 146 1.726853 AGCATACTGTTTGGACGAGC 58.273 50.000 0.00 0.00 0.00 5.03
146 147 3.845178 TGTAGCATACTGTTTGGACGAG 58.155 45.455 0.00 0.00 43.54 4.18
147 148 3.845178 CTGTAGCATACTGTTTGGACGA 58.155 45.455 0.00 0.00 43.54 4.20
148 149 2.348666 GCTGTAGCATACTGTTTGGACG 59.651 50.000 0.00 0.00 43.54 4.79
149 150 2.678336 GGCTGTAGCATACTGTTTGGAC 59.322 50.000 6.18 0.00 43.54 4.02
150 151 2.355716 GGGCTGTAGCATACTGTTTGGA 60.356 50.000 6.18 0.00 43.54 3.53
151 152 2.017049 GGGCTGTAGCATACTGTTTGG 58.983 52.381 6.18 0.00 43.54 3.28
152 153 2.017049 GGGGCTGTAGCATACTGTTTG 58.983 52.381 6.18 0.00 43.54 2.93
153 154 1.633432 TGGGGCTGTAGCATACTGTTT 59.367 47.619 6.18 0.00 43.54 2.83
154 155 1.285280 TGGGGCTGTAGCATACTGTT 58.715 50.000 6.18 0.00 43.54 3.16
155 156 1.141657 CATGGGGCTGTAGCATACTGT 59.858 52.381 6.18 0.00 43.54 3.55
156 157 1.141657 ACATGGGGCTGTAGCATACTG 59.858 52.381 6.18 0.97 43.54 2.74
157 158 1.141657 CACATGGGGCTGTAGCATACT 59.858 52.381 6.18 0.00 43.54 2.12
158 159 1.140852 TCACATGGGGCTGTAGCATAC 59.859 52.381 6.18 0.00 44.36 2.39
159 160 1.506025 TCACATGGGGCTGTAGCATA 58.494 50.000 6.18 0.00 44.36 3.14
160 161 0.625316 TTCACATGGGGCTGTAGCAT 59.375 50.000 6.18 0.00 44.36 3.79
161 162 0.322456 GTTCACATGGGGCTGTAGCA 60.322 55.000 6.18 0.00 44.36 3.49
162 163 0.322456 TGTTCACATGGGGCTGTAGC 60.322 55.000 0.00 0.00 41.14 3.58
163 164 1.003580 ACTGTTCACATGGGGCTGTAG 59.996 52.381 0.00 0.00 0.00 2.74
164 165 1.064003 ACTGTTCACATGGGGCTGTA 58.936 50.000 0.00 0.00 0.00 2.74
165 166 0.538057 CACTGTTCACATGGGGCTGT 60.538 55.000 0.00 0.00 0.00 4.40
166 167 1.870055 GCACTGTTCACATGGGGCTG 61.870 60.000 0.00 0.00 0.00 4.85
167 168 1.604593 GCACTGTTCACATGGGGCT 60.605 57.895 0.00 0.00 0.00 5.19
168 169 1.870055 CTGCACTGTTCACATGGGGC 61.870 60.000 0.00 0.00 0.00 5.80
169 170 0.250858 TCTGCACTGTTCACATGGGG 60.251 55.000 0.00 0.00 0.00 4.96
170 171 1.608055 TTCTGCACTGTTCACATGGG 58.392 50.000 0.00 0.00 0.00 4.00
171 172 3.079578 AGATTCTGCACTGTTCACATGG 58.920 45.455 0.00 0.00 0.00 3.66
172 173 4.473199 CAAGATTCTGCACTGTTCACATG 58.527 43.478 0.00 0.00 0.00 3.21
173 174 3.504906 CCAAGATTCTGCACTGTTCACAT 59.495 43.478 0.00 0.00 0.00 3.21
174 175 2.880268 CCAAGATTCTGCACTGTTCACA 59.120 45.455 0.00 0.00 0.00 3.58
175 176 2.351157 GCCAAGATTCTGCACTGTTCAC 60.351 50.000 0.00 0.00 0.00 3.18
176 177 1.881973 GCCAAGATTCTGCACTGTTCA 59.118 47.619 0.00 0.00 0.00 3.18
177 178 1.200948 GGCCAAGATTCTGCACTGTTC 59.799 52.381 0.00 0.00 0.00 3.18
178 179 1.251251 GGCCAAGATTCTGCACTGTT 58.749 50.000 0.00 0.00 0.00 3.16
179 180 0.111061 TGGCCAAGATTCTGCACTGT 59.889 50.000 0.61 0.00 0.00 3.55
180 181 1.404391 GATGGCCAAGATTCTGCACTG 59.596 52.381 10.96 0.00 0.00 3.66
181 182 1.284198 AGATGGCCAAGATTCTGCACT 59.716 47.619 10.96 0.00 0.00 4.40
182 183 1.760192 AGATGGCCAAGATTCTGCAC 58.240 50.000 10.96 0.00 0.00 4.57
183 184 3.870538 ATAGATGGCCAAGATTCTGCA 57.129 42.857 10.96 0.00 0.00 4.41
184 185 4.022503 GGAAATAGATGGCCAAGATTCTGC 60.023 45.833 10.96 3.49 0.00 4.26
185 186 4.522022 GGGAAATAGATGGCCAAGATTCTG 59.478 45.833 10.96 0.00 0.00 3.02
186 187 4.168675 TGGGAAATAGATGGCCAAGATTCT 59.831 41.667 10.96 11.15 0.00 2.40
187 188 4.473444 TGGGAAATAGATGGCCAAGATTC 58.527 43.478 10.96 10.37 0.00 2.52
188 189 4.541250 TGGGAAATAGATGGCCAAGATT 57.459 40.909 10.96 6.94 0.00 2.40
189 190 4.356190 AGATGGGAAATAGATGGCCAAGAT 59.644 41.667 10.96 0.00 0.00 2.40
190 191 3.723681 AGATGGGAAATAGATGGCCAAGA 59.276 43.478 10.96 0.00 0.00 3.02
191 192 3.825014 CAGATGGGAAATAGATGGCCAAG 59.175 47.826 10.96 0.00 0.00 3.61
192 193 3.462954 TCAGATGGGAAATAGATGGCCAA 59.537 43.478 10.96 0.00 0.00 4.52
193 194 3.055328 TCAGATGGGAAATAGATGGCCA 58.945 45.455 8.56 8.56 0.00 5.36
194 195 3.795688 TCAGATGGGAAATAGATGGCC 57.204 47.619 0.00 0.00 0.00 5.36
195 196 4.015084 CCATCAGATGGGAAATAGATGGC 58.985 47.826 20.76 0.00 46.86 4.40
208 209 5.728471 ACTTAGTCTGTGAACCATCAGATG 58.272 41.667 3.04 3.04 41.67 2.90
209 210 6.365970 AACTTAGTCTGTGAACCATCAGAT 57.634 37.500 0.00 0.00 41.67 2.90
210 211 5.808366 AACTTAGTCTGTGAACCATCAGA 57.192 39.130 0.00 0.00 35.88 3.27
211 212 6.102663 CCTAACTTAGTCTGTGAACCATCAG 58.897 44.000 0.00 0.00 35.88 2.90
212 213 5.046591 CCCTAACTTAGTCTGTGAACCATCA 60.047 44.000 0.00 0.00 0.00 3.07
213 214 5.046520 ACCCTAACTTAGTCTGTGAACCATC 60.047 44.000 0.00 0.00 0.00 3.51
214 215 4.844655 ACCCTAACTTAGTCTGTGAACCAT 59.155 41.667 0.00 0.00 0.00 3.55
215 216 4.228824 ACCCTAACTTAGTCTGTGAACCA 58.771 43.478 0.00 0.00 0.00 3.67
216 217 4.886496 ACCCTAACTTAGTCTGTGAACC 57.114 45.455 0.00 0.00 0.00 3.62
220 221 9.543783 GGAAATAATACCCTAACTTAGTCTGTG 57.456 37.037 0.00 0.00 0.00 3.66
221 222 8.712103 GGGAAATAATACCCTAACTTAGTCTGT 58.288 37.037 0.00 0.00 42.56 3.41
234 235 7.344134 ACTGTGAAGTTAGGGAAATAATACCC 58.656 38.462 0.00 0.00 45.88 3.69
235 236 9.543783 CTACTGTGAAGTTAGGGAAATAATACC 57.456 37.037 0.00 0.00 0.00 2.73
236 237 9.043079 GCTACTGTGAAGTTAGGGAAATAATAC 57.957 37.037 0.00 0.00 0.00 1.89
237 238 8.989131 AGCTACTGTGAAGTTAGGGAAATAATA 58.011 33.333 0.00 0.00 0.00 0.98
238 239 7.862675 AGCTACTGTGAAGTTAGGGAAATAAT 58.137 34.615 0.00 0.00 0.00 1.28
239 240 7.253905 AGCTACTGTGAAGTTAGGGAAATAA 57.746 36.000 0.00 0.00 0.00 1.40
240 241 6.869206 AGCTACTGTGAAGTTAGGGAAATA 57.131 37.500 0.00 0.00 0.00 1.40
241 242 5.763876 AGCTACTGTGAAGTTAGGGAAAT 57.236 39.130 0.00 0.00 0.00 2.17
242 243 6.269307 ACTTAGCTACTGTGAAGTTAGGGAAA 59.731 38.462 0.00 0.00 0.00 3.13
243 244 5.778750 ACTTAGCTACTGTGAAGTTAGGGAA 59.221 40.000 0.00 0.00 0.00 3.97
244 245 5.331069 ACTTAGCTACTGTGAAGTTAGGGA 58.669 41.667 0.00 0.00 0.00 4.20
245 246 5.662674 ACTTAGCTACTGTGAAGTTAGGG 57.337 43.478 0.00 0.00 0.00 3.53
248 249 7.886970 TCCTCTAACTTAGCTACTGTGAAGTTA 59.113 37.037 13.81 13.81 41.25 2.24
249 250 6.720288 TCCTCTAACTTAGCTACTGTGAAGTT 59.280 38.462 13.13 13.13 42.96 2.66
250 251 6.246919 TCCTCTAACTTAGCTACTGTGAAGT 58.753 40.000 0.00 0.00 33.60 3.01
251 252 6.679392 GCTCCTCTAACTTAGCTACTGTGAAG 60.679 46.154 0.00 0.00 32.18 3.02
252 253 5.125739 GCTCCTCTAACTTAGCTACTGTGAA 59.874 44.000 0.00 0.00 32.18 3.18
253 254 4.641094 GCTCCTCTAACTTAGCTACTGTGA 59.359 45.833 0.00 0.00 32.18 3.58
254 255 4.202070 GGCTCCTCTAACTTAGCTACTGTG 60.202 50.000 0.00 0.00 35.30 3.66
255 256 3.955551 GGCTCCTCTAACTTAGCTACTGT 59.044 47.826 0.00 0.00 35.30 3.55
256 257 3.954904 TGGCTCCTCTAACTTAGCTACTG 59.045 47.826 0.00 0.00 35.30 2.74
257 258 4.211920 CTGGCTCCTCTAACTTAGCTACT 58.788 47.826 0.00 0.00 35.30 2.57
258 259 3.955551 ACTGGCTCCTCTAACTTAGCTAC 59.044 47.826 0.00 0.00 35.30 3.58
259 260 4.252570 ACTGGCTCCTCTAACTTAGCTA 57.747 45.455 0.00 0.00 35.30 3.32
260 261 3.108847 ACTGGCTCCTCTAACTTAGCT 57.891 47.619 0.00 0.00 35.30 3.32
261 262 3.431068 GGAACTGGCTCCTCTAACTTAGC 60.431 52.174 0.00 0.00 32.21 3.09
262 263 3.133183 GGGAACTGGCTCCTCTAACTTAG 59.867 52.174 0.00 0.00 35.63 2.18
263 264 3.105283 GGGAACTGGCTCCTCTAACTTA 58.895 50.000 0.00 0.00 35.63 2.24
264 265 1.909986 GGGAACTGGCTCCTCTAACTT 59.090 52.381 0.00 0.00 35.63 2.66
265 266 1.203313 TGGGAACTGGCTCCTCTAACT 60.203 52.381 0.00 0.00 35.63 2.24
266 267 1.276622 TGGGAACTGGCTCCTCTAAC 58.723 55.000 0.00 0.00 35.63 2.34
267 268 2.038863 TTGGGAACTGGCTCCTCTAA 57.961 50.000 0.00 0.00 35.63 2.10
268 269 2.038863 TTTGGGAACTGGCTCCTCTA 57.961 50.000 0.00 0.00 35.63 2.43
269 270 1.149101 TTTTGGGAACTGGCTCCTCT 58.851 50.000 0.00 0.00 35.63 3.69
270 271 1.995376 TTTTTGGGAACTGGCTCCTC 58.005 50.000 0.00 0.00 35.63 3.71
286 287 2.582052 TGTCGCACAAGGATCCTTTTT 58.418 42.857 24.93 11.80 33.42 1.94
293 294 2.029110 CCCAAATTTGTCGCACAAGGAT 60.029 45.455 16.73 0.00 39.53 3.24
406 407 3.506743 TTGGAGGGGCTTGCCACA 61.507 61.111 16.85 5.21 0.00 4.17
412 413 2.850851 TATCGGGGTTGGAGGGGCTT 62.851 60.000 0.00 0.00 0.00 4.35
439 442 5.155278 TCTAAAATAAGACGGGAGCAACA 57.845 39.130 0.00 0.00 0.00 3.33
440 443 4.034163 GCTCTAAAATAAGACGGGAGCAAC 59.966 45.833 0.00 0.00 42.60 4.17
441 444 4.189231 GCTCTAAAATAAGACGGGAGCAA 58.811 43.478 0.00 0.00 42.60 3.91
513 516 6.321181 TCCAACAGCAGCCCTATAATAAAAAG 59.679 38.462 0.00 0.00 0.00 2.27
515 518 5.761205 TCCAACAGCAGCCCTATAATAAAA 58.239 37.500 0.00 0.00 0.00 1.52
588 591 7.595819 TGAAAACATGGTGGAGTAGAAAAAT 57.404 32.000 0.00 0.00 0.00 1.82
594 597 3.129287 GGCATGAAAACATGGTGGAGTAG 59.871 47.826 11.29 0.00 33.41 2.57
624 627 3.616956 AGCAACAACAGCAGCTCTATA 57.383 42.857 0.00 0.00 30.05 1.31
625 628 2.486472 AGCAACAACAGCAGCTCTAT 57.514 45.000 0.00 0.00 30.05 1.98
661 667 1.403116 CCACGTATACACCACAAGCGA 60.403 52.381 3.32 0.00 0.00 4.93
671 677 1.249469 TGGCGGTGTCCACGTATACA 61.249 55.000 3.32 0.00 0.00 2.29
694 700 1.006102 ACACTGACACTACCTGCGC 60.006 57.895 0.00 0.00 0.00 6.09
839 846 6.696441 TTTATTTTGTGGTTTCCTACGTGT 57.304 33.333 0.00 0.00 0.00 4.49
921 928 2.466982 CGTCGTCTTCGGGATCGGA 61.467 63.158 0.00 0.00 37.69 4.55
1032 1039 1.133575 CCGACCTGGTAGACATAGGGA 60.134 57.143 8.65 0.00 35.89 4.20
1095 1102 1.338655 GACCTCGAATCCAGACCTAGC 59.661 57.143 0.00 0.00 0.00 3.42
1205 1212 3.243359 TCCCTGTTGGCTCTGAAAAAT 57.757 42.857 0.00 0.00 0.00 1.82
1267 1274 0.320374 CACCGGAAACTACCTGCAGA 59.680 55.000 17.39 0.00 0.00 4.26
1358 1365 3.507233 TCACCATCACCTGAAAAGCATTC 59.493 43.478 0.00 0.00 0.00 2.67
1368 1378 2.401766 GCGGCTTCACCATCACCTG 61.402 63.158 0.00 0.00 39.03 4.00
1383 1393 1.845809 GCAGTCAACTTGTCCTGCGG 61.846 60.000 15.53 0.00 40.67 5.69
1426 1436 0.179059 TCAGGCGCAGAACAGAAACA 60.179 50.000 10.83 0.00 0.00 2.83
1466 1476 5.878116 GCATGTCACCCAAACTATACTTGTA 59.122 40.000 0.00 0.00 0.00 2.41
1633 1643 6.347888 CGTTATTGAACAAAACCGTAGTGGAT 60.348 38.462 0.00 0.00 36.91 3.41
1900 1953 2.157738 GCCTAGGACATACCGATACGT 58.842 52.381 14.75 0.00 44.74 3.57
1908 1961 2.632996 TGCCATGTAGCCTAGGACATAC 59.367 50.000 14.75 12.15 34.52 2.39
2085 2246 2.873797 CTTCCCCAAGCTTGCTACC 58.126 57.895 21.43 0.00 0.00 3.18
2387 2574 6.041069 CCAATAAAAGGCCAAATTATCGGGTA 59.959 38.462 5.01 0.00 0.00 3.69
2413 2600 3.929610 GGCTGATTTATCGGTCTGATAGC 59.070 47.826 5.19 5.19 40.58 2.97
2741 2957 7.045725 ACTTAAACATCGTAATGACTTCACG 57.954 36.000 0.00 0.00 36.67 4.35
2805 3021 6.210385 TGGCTTTGCATGGAAAGTATAGAAAA 59.790 34.615 32.04 12.61 35.67 2.29
3339 3717 2.146342 AGGTTCATGCGACTGTTTCAG 58.854 47.619 0.00 0.00 37.52 3.02
3445 3823 2.134346 GCACCAATTTCAATGTTGCGT 58.866 42.857 0.00 0.00 0.00 5.24
3711 4096 7.873719 TTGCAGCTTTAAGCCTATAATTACA 57.126 32.000 13.84 0.00 43.77 2.41
3903 4308 7.500141 TGCAAGTATACTGAATTAGATGCTGA 58.500 34.615 17.99 2.18 0.00 4.26
3947 4352 3.877508 CTCCCGGAAAATTTAGCTGGTAG 59.122 47.826 0.73 7.29 0.00 3.18
4053 4458 1.664151 CCCTGTCGAATTTACCGAAGC 59.336 52.381 0.00 0.00 37.81 3.86
4057 4462 1.206371 AGGACCCTGTCGAATTTACCG 59.794 52.381 0.00 0.00 32.65 4.02
4146 4554 5.400188 CACAATACAAGCACAATCAACAGTG 59.600 40.000 0.00 0.00 38.74 3.66
4205 4613 1.694696 CTCTTCTATGTGGGGTAGGGC 59.305 57.143 0.00 0.00 0.00 5.19
4258 4666 7.978975 CCTCCTGAACTACTATGAAAAAGAGAG 59.021 40.741 0.00 0.00 0.00 3.20
4263 4671 6.013725 TGCTCCTCCTGAACTACTATGAAAAA 60.014 38.462 0.00 0.00 0.00 1.94
4272 4680 3.702045 ACATACTGCTCCTCCTGAACTAC 59.298 47.826 0.00 0.00 0.00 2.73
4280 4692 3.636153 AAGGAAACATACTGCTCCTCC 57.364 47.619 0.00 0.00 33.36 4.30
4324 4736 5.690997 CATATGATGCTTCTCAGTGCAAT 57.309 39.130 0.00 0.00 42.74 3.56
4451 4866 3.254014 AAGCGATGTGTTGCGGCAC 62.254 57.895 0.05 0.00 39.86 5.01
4455 4870 2.244436 CTGGGAAGCGATGTGTTGCG 62.244 60.000 0.00 0.00 39.86 4.85
4566 4981 2.342406 TCTGGATGAAGAACCTGGGA 57.658 50.000 0.00 0.00 0.00 4.37
4587 5002 2.553028 GGCCAGGAAGAAGAACATGACA 60.553 50.000 0.00 0.00 0.00 3.58
4709 5135 1.477923 GGGGTTCTGTAAGGTGCAACA 60.478 52.381 3.64 0.00 39.98 3.33
4710 5136 1.244816 GGGGTTCTGTAAGGTGCAAC 58.755 55.000 0.00 0.00 0.00 4.17
4711 5137 0.111639 GGGGGTTCTGTAAGGTGCAA 59.888 55.000 0.00 0.00 0.00 4.08
4712 5138 0.770557 AGGGGGTTCTGTAAGGTGCA 60.771 55.000 0.00 0.00 0.00 4.57
4713 5139 0.035343 GAGGGGGTTCTGTAAGGTGC 60.035 60.000 0.00 0.00 0.00 5.01
4714 5140 0.618981 GGAGGGGGTTCTGTAAGGTG 59.381 60.000 0.00 0.00 0.00 4.00
4715 5141 0.549413 GGGAGGGGGTTCTGTAAGGT 60.549 60.000 0.00 0.00 0.00 3.50
4716 5142 0.253207 AGGGAGGGGGTTCTGTAAGG 60.253 60.000 0.00 0.00 0.00 2.69
4717 5143 1.205055 GAGGGAGGGGGTTCTGTAAG 58.795 60.000 0.00 0.00 0.00 2.34
4718 5144 0.253020 GGAGGGAGGGGGTTCTGTAA 60.253 60.000 0.00 0.00 0.00 2.41
4719 5145 1.394963 GGAGGGAGGGGGTTCTGTA 59.605 63.158 0.00 0.00 0.00 2.74
4720 5146 2.125225 GGAGGGAGGGGGTTCTGT 59.875 66.667 0.00 0.00 0.00 3.41
4721 5147 2.692741 GGGAGGGAGGGGGTTCTG 60.693 72.222 0.00 0.00 0.00 3.02
4722 5148 2.882143 AGGGAGGGAGGGGGTTCT 60.882 66.667 0.00 0.00 0.00 3.01
4723 5149 2.367107 GAGGGAGGGAGGGGGTTC 60.367 72.222 0.00 0.00 0.00 3.62
4724 5150 2.882143 AGAGGGAGGGAGGGGGTT 60.882 66.667 0.00 0.00 0.00 4.11
4725 5151 3.700350 CAGAGGGAGGGAGGGGGT 61.700 72.222 0.00 0.00 0.00 4.95
4726 5152 2.319410 CTACAGAGGGAGGGAGGGGG 62.319 70.000 0.00 0.00 0.00 5.40
4727 5153 1.234529 CTACAGAGGGAGGGAGGGG 59.765 68.421 0.00 0.00 0.00 4.79
4728 5154 0.863956 ATCTACAGAGGGAGGGAGGG 59.136 60.000 0.00 0.00 0.00 4.30
4731 5157 0.105453 GGCATCTACAGAGGGAGGGA 60.105 60.000 0.00 0.00 0.00 4.20
4735 5161 0.324368 ACACGGCATCTACAGAGGGA 60.324 55.000 0.00 0.00 0.00 4.20
4736 5162 0.103208 GACACGGCATCTACAGAGGG 59.897 60.000 0.00 0.00 0.00 4.30
4740 5166 2.224217 CGCGACACGGCATCTACAG 61.224 63.158 0.00 0.00 38.44 2.74
4914 5637 6.599244 TCAATGGGATCTAAGTCAATGTCAAC 59.401 38.462 0.00 0.00 0.00 3.18
4985 5711 5.118357 CAGATATACGAGCTTGCAGATTGAC 59.882 44.000 0.00 0.00 0.00 3.18
5022 5748 1.198094 TGGGTCGCCATCCTCTTTCA 61.198 55.000 0.00 0.00 0.00 2.69
5070 5796 4.634443 GCACATTTTAGATTGGTACTCCGT 59.366 41.667 0.00 0.00 36.30 4.69
5108 5839 3.125146 CGAGAAGATTTCGGTTGCATGAA 59.875 43.478 0.00 0.00 34.56 2.57
5118 5849 2.673368 CCCTGAAACCGAGAAGATTTCG 59.327 50.000 0.00 0.00 35.04 3.46
5119 5850 3.935828 CTCCCTGAAACCGAGAAGATTTC 59.064 47.826 0.00 0.00 32.86 2.17
5122 5853 1.834263 CCTCCCTGAAACCGAGAAGAT 59.166 52.381 0.00 0.00 0.00 2.40
5123 5854 1.267121 CCTCCCTGAAACCGAGAAGA 58.733 55.000 0.00 0.00 0.00 2.87
5124 5855 0.391793 GCCTCCCTGAAACCGAGAAG 60.392 60.000 0.00 0.00 0.00 2.85
5224 6148 8.081025 CCTACGATCTCACCTAAATTTACCTAC 58.919 40.741 0.00 0.00 0.00 3.18
5284 6241 8.385898 TGATTTCGTTGGACTTGTAAACTTAT 57.614 30.769 0.00 0.00 0.00 1.73
5296 6253 4.455877 AGTTTGGATCTGATTTCGTTGGAC 59.544 41.667 0.00 0.00 0.00 4.02
5302 6259 5.046529 AGATCGAGTTTGGATCTGATTTCG 58.953 41.667 3.67 0.00 46.62 3.46
5311 6268 7.837863 TCTTTTACTGTAGATCGAGTTTGGAT 58.162 34.615 0.00 0.00 0.00 3.41
5393 6351 7.161773 AGACAAAATTGGATGTGAATAGTGG 57.838 36.000 0.00 0.00 0.00 4.00
5423 6381 5.827267 AGTCGAACTACCCTTATAGAGAACC 59.173 44.000 0.00 0.00 0.00 3.62
5433 6391 2.759535 GCTCCTAAGTCGAACTACCCTT 59.240 50.000 0.00 0.00 0.00 3.95
5437 6395 4.698583 TTCAGCTCCTAAGTCGAACTAC 57.301 45.455 0.00 0.00 0.00 2.73
5438 6396 5.916661 ATTTCAGCTCCTAAGTCGAACTA 57.083 39.130 0.00 0.00 0.00 2.24
5446 6404 4.808364 CCTCGAAGAATTTCAGCTCCTAAG 59.192 45.833 0.00 0.00 34.09 2.18
5465 6423 4.986034 TGTGTTTGATGTAGTACAACCTCG 59.014 41.667 7.16 0.00 0.00 4.63
5486 6444 9.283768 TGAAAATATTTGTAGACACACATCTGT 57.716 29.630 0.39 0.00 33.30 3.41
5487 6445 9.764870 CTGAAAATATTTGTAGACACACATCTG 57.235 33.333 0.39 0.00 33.30 2.90
5511 6713 9.090692 AGACTCAAAACATGTTCAAAAATTCTG 57.909 29.630 12.39 0.00 0.00 3.02
5596 6798 4.715130 TCCCACCCCCACTCTCCG 62.715 72.222 0.00 0.00 0.00 4.63
5607 6809 3.282885 CTCTAAAGCCTCAAATCCCACC 58.717 50.000 0.00 0.00 0.00 4.61
5613 6815 5.627040 CGACTAACCCTCTAAAGCCTCAAAT 60.627 44.000 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.