Multiple sequence alignment - TraesCS5B01G389400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G389400 chr5B 100.000 2723 0 0 1 2723 568422181 568419459 0.000000e+00 5029
1 TraesCS5B01G389400 chr5B 89.271 727 56 7 936 1647 568734188 568733469 0.000000e+00 891
2 TraesCS5B01G389400 chr5D 88.033 2206 139 59 607 2723 462092911 462090742 0.000000e+00 2495
3 TraesCS5B01G389400 chr5D 89.315 730 57 8 936 1647 462362376 462361650 0.000000e+00 896
4 TraesCS5B01G389400 chr5D 87.907 215 3 14 639 837 462362638 462362431 5.860000e-57 231
5 TraesCS5B01G389400 chr5A 88.960 2038 102 45 607 2579 582401561 582399582 0.000000e+00 2403
6 TraesCS5B01G389400 chr5A 88.406 1035 77 20 639 1647 582608931 582607914 0.000000e+00 1206
7 TraesCS5B01G389400 chr5A 84.058 138 10 3 2598 2723 582399246 582399109 3.680000e-24 122
8 TraesCS5B01G389400 chr3B 94.435 611 33 1 1 610 408319033 408319643 0.000000e+00 939
9 TraesCS5B01G389400 chr3B 93.596 609 37 2 3 610 408313851 408314458 0.000000e+00 907
10 TraesCS5B01G389400 chr1B 93.781 611 37 1 1 610 389679207 389678597 0.000000e+00 917
11 TraesCS5B01G389400 chr1B 92.320 625 46 2 3 626 524689716 524689093 0.000000e+00 887
12 TraesCS5B01G389400 chr7B 93.301 612 38 3 1 610 404915954 404915344 0.000000e+00 900
13 TraesCS5B01G389400 chr7B 93.115 610 39 3 3 610 689775338 689775946 0.000000e+00 891
14 TraesCS5B01G389400 chr7B 92.496 613 42 4 1 610 689779544 689780155 0.000000e+00 874
15 TraesCS5B01G389400 chr4B 92.695 616 38 6 1 610 604469817 604469203 0.000000e+00 881
16 TraesCS5B01G389400 chr4A 92.671 614 40 4 1 610 688120219 688119607 0.000000e+00 880


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G389400 chr5B 568419459 568422181 2722 True 5029.0 5029 100.0000 1 2723 1 chr5B.!!$R1 2722
1 TraesCS5B01G389400 chr5B 568733469 568734188 719 True 891.0 891 89.2710 936 1647 1 chr5B.!!$R2 711
2 TraesCS5B01G389400 chr5D 462090742 462092911 2169 True 2495.0 2495 88.0330 607 2723 1 chr5D.!!$R1 2116
3 TraesCS5B01G389400 chr5D 462361650 462362638 988 True 563.5 896 88.6110 639 1647 2 chr5D.!!$R2 1008
4 TraesCS5B01G389400 chr5A 582399109 582401561 2452 True 1262.5 2403 86.5090 607 2723 2 chr5A.!!$R2 2116
5 TraesCS5B01G389400 chr5A 582607914 582608931 1017 True 1206.0 1206 88.4060 639 1647 1 chr5A.!!$R1 1008
6 TraesCS5B01G389400 chr3B 408319033 408319643 610 False 939.0 939 94.4350 1 610 1 chr3B.!!$F2 609
7 TraesCS5B01G389400 chr3B 408313851 408314458 607 False 907.0 907 93.5960 3 610 1 chr3B.!!$F1 607
8 TraesCS5B01G389400 chr1B 389678597 389679207 610 True 917.0 917 93.7810 1 610 1 chr1B.!!$R1 609
9 TraesCS5B01G389400 chr1B 524689093 524689716 623 True 887.0 887 92.3200 3 626 1 chr1B.!!$R2 623
10 TraesCS5B01G389400 chr7B 404915344 404915954 610 True 900.0 900 93.3010 1 610 1 chr7B.!!$R1 609
11 TraesCS5B01G389400 chr7B 689775338 689780155 4817 False 882.5 891 92.8055 1 610 2 chr7B.!!$F1 609
12 TraesCS5B01G389400 chr4B 604469203 604469817 614 True 881.0 881 92.6950 1 610 1 chr4B.!!$R1 609
13 TraesCS5B01G389400 chr4A 688119607 688120219 612 True 880.0 880 92.6710 1 610 1 chr4A.!!$R1 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
849 5076 0.106217 CTCTCTCTCTCCCCACCTCC 60.106 65.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2461 6810 0.314302 AACACAAGTCGAGACGGGAG 59.686 55.0 0.0 0.0 36.2 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.733773 TTGACCCTCAAGATGAACTCTAATA 57.266 36.000 0.00 0.00 31.83 0.98
96 97 4.400529 AGATTGTTTTTGGGCTCGTTTT 57.599 36.364 0.00 0.00 0.00 2.43
257 258 0.179000 AAGTCCAGCCGCCTCTTATG 59.821 55.000 0.00 0.00 0.00 1.90
304 305 6.786207 TGAACAACACACAATCGAACAAATA 58.214 32.000 0.00 0.00 0.00 1.40
377 4591 4.270325 CCTCGTTCTTCGTCTGTTCTTTTT 59.730 41.667 0.00 0.00 40.80 1.94
385 4599 6.481976 TCTTCGTCTGTTCTTTTTATTGCAGA 59.518 34.615 0.00 0.00 0.00 4.26
393 4607 1.378531 TTTTATTGCAGAGCGGCGAT 58.621 45.000 12.98 2.76 40.87 4.58
396 4610 2.026945 TATTGCAGAGCGGCGATCCA 62.027 55.000 22.74 10.93 38.76 3.41
502 4717 1.375523 CGGGTCTACAAAAGCGCCT 60.376 57.895 2.29 0.00 0.00 5.52
841 5068 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
845 5072 1.843851 TCTCTCTCTCTCTCTCCCCAC 59.156 57.143 0.00 0.00 0.00 4.61
849 5076 0.106217 CTCTCTCTCTCCCCACCTCC 60.106 65.000 0.00 0.00 0.00 4.30
850 5077 0.553862 TCTCTCTCTCCCCACCTCCT 60.554 60.000 0.00 0.00 0.00 3.69
904 5136 1.817099 CCCATTCACCAGCGAGCTC 60.817 63.158 2.73 2.73 0.00 4.09
978 5217 4.179579 GCGTCGGGATTTGGCTGC 62.180 66.667 0.00 0.00 0.00 5.25
1735 6007 2.751036 TGTGACGCCATGCCCATG 60.751 61.111 1.28 1.28 38.51 3.66
1754 6037 1.568597 TGCCACCCCATAGTAGCAATT 59.431 47.619 0.00 0.00 31.27 2.32
1756 6039 2.863809 CCACCCCATAGTAGCAATTCC 58.136 52.381 0.00 0.00 0.00 3.01
1757 6040 2.489073 CCACCCCATAGTAGCAATTCCC 60.489 54.545 0.00 0.00 0.00 3.97
1764 6047 4.264083 CCATAGTAGCAATTCCCCCATGAT 60.264 45.833 0.00 0.00 0.00 2.45
1765 6048 3.234234 AGTAGCAATTCCCCCATGATG 57.766 47.619 0.00 0.00 0.00 3.07
1766 6049 1.615392 GTAGCAATTCCCCCATGATGC 59.385 52.381 0.00 0.00 0.00 3.91
1767 6050 1.111116 AGCAATTCCCCCATGATGCG 61.111 55.000 0.00 0.00 38.74 4.73
1768 6051 1.394266 GCAATTCCCCCATGATGCGT 61.394 55.000 0.00 0.00 0.00 5.24
1769 6052 0.386476 CAATTCCCCCATGATGCGTG 59.614 55.000 0.00 0.00 0.00 5.34
1770 6053 1.394266 AATTCCCCCATGATGCGTGC 61.394 55.000 0.00 0.00 0.00 5.34
1771 6054 4.854924 TCCCCCATGATGCGTGCG 62.855 66.667 0.00 0.00 0.00 5.34
1810 6093 6.259550 TCCGGTAAAGTAGTAAGTCTTGTC 57.740 41.667 0.00 0.00 0.00 3.18
1924 6216 8.847196 GGGTTTTGTCTGTAATATAGGAATTCC 58.153 37.037 17.31 17.31 0.00 3.01
1928 6220 8.621532 TTGTCTGTAATATAGGAATTCCATGC 57.378 34.615 26.22 10.48 38.89 4.06
1936 6228 2.105766 AGGAATTCCATGCCTTTGCTC 58.894 47.619 26.22 0.00 38.89 4.26
1959 6251 4.338118 CCAACAACATGTTTGTACCAGAGT 59.662 41.667 8.77 0.00 38.77 3.24
1974 6266 3.634448 ACCAGAGTAAGATCACATCCGAG 59.366 47.826 0.00 0.00 0.00 4.63
1990 6282 7.223971 TCACATCCGAGCATGTAAAATTAGTAC 59.776 37.037 0.00 0.00 35.10 2.73
1991 6283 7.224753 CACATCCGAGCATGTAAAATTAGTACT 59.775 37.037 0.00 0.00 35.10 2.73
1992 6284 8.418662 ACATCCGAGCATGTAAAATTAGTACTA 58.581 33.333 0.00 0.00 35.10 1.82
2025 6317 6.971527 TGAATTGATCATTGAAAATGCACC 57.028 33.333 0.00 0.00 31.50 5.01
2034 6326 5.863397 TCATTGAAAATGCACCGAATTTCTC 59.137 36.000 0.00 0.00 33.90 2.87
2035 6327 4.844998 TGAAAATGCACCGAATTTCTCA 57.155 36.364 0.00 0.00 33.90 3.27
2036 6328 5.193663 TGAAAATGCACCGAATTTCTCAA 57.806 34.783 0.00 0.00 33.90 3.02
2039 6334 4.376340 AATGCACCGAATTTCTCAATCC 57.624 40.909 0.00 0.00 0.00 3.01
2042 6337 2.098117 GCACCGAATTTCTCAATCCCTG 59.902 50.000 0.00 0.00 0.00 4.45
2048 6343 1.371467 TTTCTCAATCCCTGGCCAGA 58.629 50.000 34.91 16.42 0.00 3.86
2061 6356 3.086391 GCCAGAGCCTGCGATCAGA 62.086 63.158 0.00 0.00 42.95 3.27
2063 6358 0.106335 CCAGAGCCTGCGATCAGAAT 59.894 55.000 0.00 0.00 42.95 2.40
2064 6359 1.342496 CCAGAGCCTGCGATCAGAATA 59.658 52.381 0.00 0.00 42.95 1.75
2065 6360 2.609984 CCAGAGCCTGCGATCAGAATAG 60.610 54.545 0.00 0.00 42.95 1.73
2067 6362 2.697751 AGAGCCTGCGATCAGAATAGTT 59.302 45.455 0.00 0.00 42.95 2.24
2069 6364 1.262683 GCCTGCGATCAGAATAGTTGC 59.737 52.381 0.00 0.00 42.95 4.17
2070 6365 2.831333 CCTGCGATCAGAATAGTTGCT 58.169 47.619 0.00 0.00 42.95 3.91
2072 6367 3.247173 CCTGCGATCAGAATAGTTGCTTC 59.753 47.826 0.00 0.00 42.95 3.86
2073 6368 3.198068 TGCGATCAGAATAGTTGCTTCC 58.802 45.455 0.00 0.00 0.00 3.46
2074 6369 2.219674 GCGATCAGAATAGTTGCTTCCG 59.780 50.000 0.00 0.00 0.00 4.30
2081 6383 4.635765 CAGAATAGTTGCTTCCGGAATGAA 59.364 41.667 19.21 10.59 0.00 2.57
2082 6384 5.297776 CAGAATAGTTGCTTCCGGAATGAAT 59.702 40.000 19.21 8.45 0.00 2.57
2091 6393 3.822594 TCCGGAATGAATTGAACGTTG 57.177 42.857 5.00 0.00 0.00 4.10
2112 6414 4.797471 TGAAAATGCACTGAATTTCTCGG 58.203 39.130 0.00 0.00 33.90 4.63
2113 6415 4.278170 TGAAAATGCACTGAATTTCTCGGT 59.722 37.500 0.00 0.00 45.10 4.69
2114 6416 4.853924 AAATGCACTGAATTTCTCGGTT 57.146 36.364 0.00 0.00 41.13 4.44
2115 6417 3.837213 ATGCACTGAATTTCTCGGTTG 57.163 42.857 0.00 0.00 41.13 3.77
2116 6418 2.571212 TGCACTGAATTTCTCGGTTGT 58.429 42.857 0.00 0.00 41.13 3.32
2151 6457 4.009675 TGAGAATCTTGGAACCATTTCCG 58.990 43.478 0.00 0.00 45.44 4.30
2176 6491 5.702865 TGAAGCTAGTTGCAATCAATCAAC 58.297 37.500 0.59 0.00 45.94 3.18
2179 6494 4.397417 AGCTAGTTGCAATCAATCAACTCC 59.603 41.667 0.59 4.79 46.98 3.85
2180 6495 4.397417 GCTAGTTGCAATCAATCAACTCCT 59.603 41.667 0.59 0.00 46.98 3.69
2181 6496 5.448360 GCTAGTTGCAATCAATCAACTCCTC 60.448 44.000 0.59 0.01 46.98 3.71
2182 6497 4.660168 AGTTGCAATCAATCAACTCCTCT 58.340 39.130 0.59 0.00 46.98 3.69
2183 6498 5.809001 AGTTGCAATCAATCAACTCCTCTA 58.191 37.500 0.59 0.00 46.98 2.43
2396 6745 0.893270 TTTGGCATACGGTTGCAGCT 60.893 50.000 12.95 0.00 44.59 4.24
2538 6887 4.731853 TCCGCCTCCCCATCACCA 62.732 66.667 0.00 0.00 0.00 4.17
2551 6905 5.245977 TCCCCATCACCAATTTTTCTTTCTC 59.754 40.000 0.00 0.00 0.00 2.87
2591 7268 2.103042 GCACTCGGCTGATGTGGAC 61.103 63.158 19.93 6.96 40.25 4.02
2592 7269 1.448540 CACTCGGCTGATGTGGACC 60.449 63.158 14.03 0.00 0.00 4.46
2593 7270 2.202797 CTCGGCTGATGTGGACCG 60.203 66.667 0.00 0.00 46.97 4.79
2594 7271 2.994995 TCGGCTGATGTGGACCGT 60.995 61.111 0.00 0.00 45.76 4.83
2595 7272 2.815211 CGGCTGATGTGGACCGTG 60.815 66.667 0.00 0.00 40.77 4.94
2596 7273 2.347490 GGCTGATGTGGACCGTGT 59.653 61.111 0.00 0.00 0.00 4.49
2625 7302 6.052360 GGTGGGAATCTAATGAGTTCTTCTC 58.948 44.000 0.00 0.00 43.03 2.87
2654 7339 0.964700 TCTCGCAGGGCAGATAGATG 59.035 55.000 0.00 0.00 0.00 2.90
2716 7404 1.303074 ACCGGTGACAGCGAGAGTA 60.303 57.895 27.42 0.00 42.41 2.59
2717 7405 1.306642 ACCGGTGACAGCGAGAGTAG 61.307 60.000 27.42 12.27 42.41 2.57
2718 7406 1.025113 CCGGTGACAGCGAGAGTAGA 61.025 60.000 27.42 0.00 42.41 2.59
2720 7408 0.099791 GGTGACAGCGAGAGTAGAGC 59.900 60.000 0.00 0.00 0.00 4.09
2721 7409 0.805614 GTGACAGCGAGAGTAGAGCA 59.194 55.000 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
377 4591 1.300931 GGATCGCCGCTCTGCAATA 60.301 57.895 0.00 0.00 0.00 1.90
393 4607 4.475444 CCCCTAGGGCCTCGTGGA 62.475 72.222 23.84 0.00 35.35 4.02
502 4717 0.107897 ATACGCAAGACAATCCGGCA 60.108 50.000 0.00 0.00 43.62 5.69
534 4749 0.250814 ACTCACGTCGAAGGAGACCT 60.251 55.000 18.38 0.00 37.85 3.85
613 4829 9.573166 TTATTTTCCTGATTGAAGAGAGTTTGA 57.427 29.630 0.00 0.00 0.00 2.69
648 4864 8.474831 AGTTTTACCACTGCCAATAATATTTCC 58.525 33.333 0.00 0.00 0.00 3.13
841 5068 0.323908 AGAAGACGAGAGGAGGTGGG 60.324 60.000 0.00 0.00 0.00 4.61
845 5072 1.668751 CGAGAAGAAGACGAGAGGAGG 59.331 57.143 0.00 0.00 0.00 4.30
849 5076 0.099791 GGGCGAGAAGAAGACGAGAG 59.900 60.000 0.00 0.00 0.00 3.20
850 5077 1.645704 CGGGCGAGAAGAAGACGAGA 61.646 60.000 0.00 0.00 0.00 4.04
944 5176 2.131067 GCTTCCCTCCCGGAGAGAG 61.131 68.421 16.69 10.91 46.50 3.20
978 5217 0.391395 CAAGAGCCAGCCTGACAGAG 60.391 60.000 3.32 0.00 0.00 3.35
1735 6007 2.230660 GAATTGCTACTATGGGGTGGC 58.769 52.381 0.00 0.00 42.68 5.01
1738 6017 1.780919 GGGGAATTGCTACTATGGGGT 59.219 52.381 0.00 0.00 0.00 4.95
1739 6018 1.075536 GGGGGAATTGCTACTATGGGG 59.924 57.143 0.00 0.00 0.00 4.96
1742 6021 4.371624 TCATGGGGGAATTGCTACTATG 57.628 45.455 10.38 10.38 0.00 2.23
1754 6037 4.854924 CGCACGCATCATGGGGGA 62.855 66.667 8.44 0.00 35.51 4.81
1756 6039 3.879682 CACGCACGCATCATGGGG 61.880 66.667 6.66 0.00 34.28 4.96
1757 6040 4.541482 GCACGCACGCATCATGGG 62.541 66.667 0.00 0.00 36.28 4.00
1810 6093 5.536554 AGAACAAAATACTGACAGCATCG 57.463 39.130 1.25 0.00 0.00 3.84
1848 6131 3.557264 GCATCTGCCTGATCATCTCATCA 60.557 47.826 0.00 0.00 32.05 3.07
1924 6216 1.068895 TGTTGTTGGAGCAAAGGCATG 59.931 47.619 0.00 0.00 44.61 4.06
1927 6219 1.069049 ACATGTTGTTGGAGCAAAGGC 59.931 47.619 0.00 0.00 41.61 4.35
1928 6220 3.457610 AACATGTTGTTGGAGCAAAGG 57.542 42.857 11.07 0.00 39.45 3.11
1936 6228 4.338118 ACTCTGGTACAAACATGTTGTTGG 59.662 41.667 12.82 5.14 40.14 3.77
1959 6251 5.529581 TTACATGCTCGGATGTGATCTTA 57.470 39.130 13.36 0.00 37.16 2.10
2012 6304 5.782047 TGAGAAATTCGGTGCATTTTCAAT 58.218 33.333 0.00 0.00 31.94 2.57
2025 6317 1.678101 GGCCAGGGATTGAGAAATTCG 59.322 52.381 0.00 0.00 0.00 3.34
2048 6343 2.831333 CAACTATTCTGATCGCAGGCT 58.169 47.619 0.00 0.00 42.53 4.58
2051 6346 3.247173 GGAAGCAACTATTCTGATCGCAG 59.753 47.826 0.00 0.00 43.67 5.18
2054 6349 2.797156 CCGGAAGCAACTATTCTGATCG 59.203 50.000 0.00 0.00 35.45 3.69
2061 6356 5.652014 TCAATTCATTCCGGAAGCAACTATT 59.348 36.000 23.47 12.26 0.00 1.73
2063 6358 4.584874 TCAATTCATTCCGGAAGCAACTA 58.415 39.130 23.47 4.96 0.00 2.24
2064 6359 3.420893 TCAATTCATTCCGGAAGCAACT 58.579 40.909 23.47 4.51 0.00 3.16
2065 6360 3.848272 TCAATTCATTCCGGAAGCAAC 57.152 42.857 23.47 0.00 0.00 4.17
2067 6362 2.161410 CGTTCAATTCATTCCGGAAGCA 59.839 45.455 23.47 8.46 0.00 3.91
2069 6364 4.083537 TCAACGTTCAATTCATTCCGGAAG 60.084 41.667 23.47 14.34 0.00 3.46
2070 6365 3.815962 TCAACGTTCAATTCATTCCGGAA 59.184 39.130 21.37 21.37 0.00 4.30
2072 6367 3.822594 TCAACGTTCAATTCATTCCGG 57.177 42.857 0.00 0.00 0.00 5.14
2073 6368 6.515882 CATTTTCAACGTTCAATTCATTCCG 58.484 36.000 0.00 0.00 0.00 4.30
2074 6369 6.073873 TGCATTTTCAACGTTCAATTCATTCC 60.074 34.615 0.00 0.00 0.00 3.01
2081 6383 4.930963 TCAGTGCATTTTCAACGTTCAAT 58.069 34.783 0.00 0.00 0.00 2.57
2082 6384 4.362932 TCAGTGCATTTTCAACGTTCAA 57.637 36.364 0.00 0.00 0.00 2.69
2091 6393 4.798574 ACCGAGAAATTCAGTGCATTTTC 58.201 39.130 2.21 3.77 0.00 2.29
2112 6414 2.028658 TCTCATCACAGGCTCTGACAAC 60.029 50.000 8.91 0.00 35.18 3.32
2113 6415 2.250924 TCTCATCACAGGCTCTGACAA 58.749 47.619 8.91 0.00 35.18 3.18
2114 6416 1.928868 TCTCATCACAGGCTCTGACA 58.071 50.000 8.91 0.00 35.18 3.58
2115 6417 3.132646 AGATTCTCATCACAGGCTCTGAC 59.867 47.826 8.91 0.00 35.18 3.51
2116 6418 3.372897 AGATTCTCATCACAGGCTCTGA 58.627 45.455 8.91 0.00 35.18 3.27
2151 6457 6.127810 TGATTGATTGCAACTAGCTTCATC 57.872 37.500 0.00 1.83 45.94 2.92
2176 6491 7.008941 AGGTAGAGTAGAGTAGAGTAGAGGAG 58.991 46.154 0.00 0.00 0.00 3.69
2177 6492 6.925934 AGGTAGAGTAGAGTAGAGTAGAGGA 58.074 44.000 0.00 0.00 0.00 3.71
2179 6494 7.255730 GGTGAGGTAGAGTAGAGTAGAGTAGAG 60.256 48.148 0.00 0.00 0.00 2.43
2180 6495 6.550854 GGTGAGGTAGAGTAGAGTAGAGTAGA 59.449 46.154 0.00 0.00 0.00 2.59
2181 6496 6.552350 AGGTGAGGTAGAGTAGAGTAGAGTAG 59.448 46.154 0.00 0.00 0.00 2.57
2182 6497 6.442961 AGGTGAGGTAGAGTAGAGTAGAGTA 58.557 44.000 0.00 0.00 0.00 2.59
2183 6498 5.282946 AGGTGAGGTAGAGTAGAGTAGAGT 58.717 45.833 0.00 0.00 0.00 3.24
2420 6769 0.919710 TCAGATGAGACGAGAGGGGA 59.080 55.000 0.00 0.00 0.00 4.81
2461 6810 0.314302 AACACAAGTCGAGACGGGAG 59.686 55.000 0.00 0.00 36.20 4.30
2466 6815 4.567159 AGAAACTGAAACACAAGTCGAGAC 59.433 41.667 0.00 0.00 0.00 3.36
2538 6887 7.706607 CCAGAAAGAAACCGAGAAAGAAAAATT 59.293 33.333 0.00 0.00 0.00 1.82
2551 6905 4.726416 CATTGATCACCAGAAAGAAACCG 58.274 43.478 0.00 0.00 0.00 4.44
2591 7268 3.248446 ATTCCCACCACGGACACGG 62.248 63.158 0.00 0.00 46.48 4.94
2593 7270 0.899720 TAGATTCCCACCACGGACAC 59.100 55.000 0.00 0.00 36.56 3.67
2594 7271 1.646912 TTAGATTCCCACCACGGACA 58.353 50.000 0.00 0.00 36.56 4.02
2595 7272 2.169769 TCATTAGATTCCCACCACGGAC 59.830 50.000 0.00 0.00 36.56 4.79
2596 7273 2.434336 CTCATTAGATTCCCACCACGGA 59.566 50.000 0.00 0.00 36.56 4.69
2625 7302 2.037136 CCTGCGAGAAAGTGGGCTG 61.037 63.158 0.00 0.00 0.00 4.85
2654 7339 3.140325 TCTTCACAACCCACTTGATCC 57.860 47.619 0.00 0.00 33.59 3.36
2688 7373 2.676750 GCTGTCACCGGTCATCACATAA 60.677 50.000 2.59 0.00 0.00 1.90
2699 7384 1.025113 TCTACTCTCGCTGTCACCGG 61.025 60.000 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.