Multiple sequence alignment - TraesCS5B01G388800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G388800 chr5B 100.000 3849 0 0 1 3849 567777525 567773677 0.000000e+00 7108.0
1 TraesCS5B01G388800 chr5B 93.506 693 43 2 3157 3849 56822682 56821992 0.000000e+00 1029.0
2 TraesCS5B01G388800 chr5B 92.473 186 9 2 1588 1768 631795000 631794815 1.060000e-65 261.0
3 TraesCS5B01G388800 chr5B 91.146 192 11 3 1582 1768 657718930 657719120 4.930000e-64 255.0
4 TraesCS5B01G388800 chr5B 97.931 145 3 0 1 145 428126298 428126154 6.380000e-63 252.0
5 TraesCS5B01G388800 chr5B 88.479 217 11 7 1556 1767 233689042 233689249 2.300000e-62 250.0
6 TraesCS5B01G388800 chr5B 97.727 132 3 0 1312 1443 580125799 580125668 1.080000e-55 228.0
7 TraesCS5B01G388800 chr5D 93.080 1474 53 21 147 1593 461878494 461877043 0.000000e+00 2111.0
8 TraesCS5B01G388800 chr5D 95.760 1250 42 8 1796 3037 461876996 461875750 0.000000e+00 2004.0
9 TraesCS5B01G388800 chr5D 97.386 153 3 1 1 153 139129506 139129657 3.810000e-65 259.0
10 TraesCS5B01G388800 chr5D 97.297 148 4 0 1 148 370355842 370355695 6.380000e-63 252.0
11 TraesCS5B01G388800 chr5D 84.211 133 8 5 3025 3148 461875718 461875590 2.430000e-22 117.0
12 TraesCS5B01G388800 chr5A 94.501 1364 55 12 1805 3149 581621928 581620566 0.000000e+00 2085.0
13 TraesCS5B01G388800 chr5A 95.062 729 33 3 806 1531 581622663 581621935 0.000000e+00 1144.0
14 TraesCS5B01G388800 chr5A 95.556 45 2 0 359 403 581627683 581627639 5.330000e-09 73.1
15 TraesCS5B01G388800 chr1B 94.653 692 36 1 3158 3849 642936346 642937036 0.000000e+00 1072.0
16 TraesCS5B01G388800 chr1B 92.935 184 8 2 1594 1772 604039853 604039670 2.950000e-66 263.0
17 TraesCS5B01G388800 chr1B 93.985 133 7 1 1312 1444 298091112 298091243 2.350000e-47 200.0
18 TraesCS5B01G388800 chr2B 94.645 691 35 2 3160 3849 731725625 731726314 0.000000e+00 1070.0
19 TraesCS5B01G388800 chr2B 92.935 184 8 2 1594 1772 402680827 402680644 2.950000e-66 263.0
20 TraesCS5B01G388800 chr2B 97.297 148 4 0 1 148 230773992 230773845 6.380000e-63 252.0
21 TraesCS5B01G388800 chr2B 93.382 136 8 1 1309 1443 262908208 262908073 2.350000e-47 200.0
22 TraesCS5B01G388800 chr6B 93.931 692 41 1 3158 3849 20078209 20078899 0.000000e+00 1044.0
23 TraesCS5B01G388800 chr6B 93.777 691 41 1 3159 3849 713716209 713716897 0.000000e+00 1037.0
24 TraesCS5B01G388800 chr6B 91.979 187 9 3 1594 1774 171060959 171060773 1.370000e-64 257.0
25 TraesCS5B01G388800 chr6B 83.212 137 9 6 3025 3151 550653936 550653804 3.140000e-21 113.0
26 TraesCS5B01G388800 chr1D 93.786 692 39 2 3158 3849 420644960 420645647 0.000000e+00 1037.0
27 TraesCS5B01G388800 chr1D 97.931 145 3 0 1 145 176953011 176953155 6.380000e-63 252.0
28 TraesCS5B01G388800 chrUn 93.381 695 43 2 3158 3849 38771763 38771069 0.000000e+00 1026.0
29 TraesCS5B01G388800 chrUn 91.935 186 10 2 1594 1774 284001739 284001554 4.930000e-64 255.0
30 TraesCS5B01G388800 chr4B 93.054 691 44 4 3159 3849 606852340 606853026 0.000000e+00 1007.0
31 TraesCS5B01G388800 chr4B 97.351 151 4 0 1 151 429085334 429085484 1.370000e-64 257.0
32 TraesCS5B01G388800 chr7B 93.043 690 43 1 3160 3849 637668084 637667400 0.000000e+00 1003.0
33 TraesCS5B01G388800 chr6A 89.623 212 12 7 1563 1768 127185386 127185179 1.060000e-65 261.0
34 TraesCS5B01G388800 chr6A 89.941 169 13 4 2872 3037 429064458 429064291 8.380000e-52 215.0
35 TraesCS5B01G388800 chr6A 83.212 137 9 7 3025 3151 429064259 429064127 3.140000e-21 113.0
36 TraesCS5B01G388800 chr7A 91.935 186 10 2 1588 1768 1755397 1755582 4.930000e-64 255.0
37 TraesCS5B01G388800 chr2D 96.711 152 5 0 1 152 516410853 516411004 1.770000e-63 254.0
38 TraesCS5B01G388800 chr7D 96.667 150 5 0 1 150 161844534 161844385 2.300000e-62 250.0
39 TraesCS5B01G388800 chr7D 95.455 132 6 0 1312 1443 403146440 403146571 1.080000e-50 211.0
40 TraesCS5B01G388800 chr4A 94.937 158 5 2 1 156 41397949 41397793 1.070000e-60 244.0
41 TraesCS5B01G388800 chr1A 89.474 171 10 7 2872 3037 465928510 465928343 3.900000e-50 209.0
42 TraesCS5B01G388800 chr1A 83.212 137 9 6 3025 3151 465928311 465928179 3.140000e-21 113.0
43 TraesCS5B01G388800 chr6D 93.939 132 8 0 1312 1443 29985854 29985985 2.350000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G388800 chr5B 567773677 567777525 3848 True 7108.000000 7108 100.0000 1 3849 1 chr5B.!!$R3 3848
1 TraesCS5B01G388800 chr5B 56821992 56822682 690 True 1029.000000 1029 93.5060 3157 3849 1 chr5B.!!$R1 692
2 TraesCS5B01G388800 chr5D 461875590 461878494 2904 True 1410.666667 2111 91.0170 147 3148 3 chr5D.!!$R2 3001
3 TraesCS5B01G388800 chr5A 581620566 581622663 2097 True 1614.500000 2085 94.7815 806 3149 2 chr5A.!!$R2 2343
4 TraesCS5B01G388800 chr1B 642936346 642937036 690 False 1072.000000 1072 94.6530 3158 3849 1 chr1B.!!$F2 691
5 TraesCS5B01G388800 chr2B 731725625 731726314 689 False 1070.000000 1070 94.6450 3160 3849 1 chr2B.!!$F1 689
6 TraesCS5B01G388800 chr6B 20078209 20078899 690 False 1044.000000 1044 93.9310 3158 3849 1 chr6B.!!$F1 691
7 TraesCS5B01G388800 chr6B 713716209 713716897 688 False 1037.000000 1037 93.7770 3159 3849 1 chr6B.!!$F2 690
8 TraesCS5B01G388800 chr1D 420644960 420645647 687 False 1037.000000 1037 93.7860 3158 3849 1 chr1D.!!$F2 691
9 TraesCS5B01G388800 chrUn 38771069 38771763 694 True 1026.000000 1026 93.3810 3158 3849 1 chrUn.!!$R1 691
10 TraesCS5B01G388800 chr4B 606852340 606853026 686 False 1007.000000 1007 93.0540 3159 3849 1 chr4B.!!$F2 690
11 TraesCS5B01G388800 chr7B 637667400 637668084 684 True 1003.000000 1003 93.0430 3160 3849 1 chr7B.!!$R1 689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
690 708 0.398381 GGCTGGAGGAGATCTGAGGT 60.398 60.0 0.00 0.00 0.00 3.85 F
1618 1647 0.108329 GAGCCTTAGCGCAGTGGTAA 60.108 55.0 11.47 5.53 46.67 2.85 F
1719 1748 0.037734 GACCCAAATTGGTCGGACCT 59.962 55.0 26.41 5.90 44.98 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1624 1653 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.0 0.0 0.0 44.78 4.85 R
2564 2628 0.389948 GTGAACTCTGGCCCGTACAG 60.390 60.0 0.0 0.0 37.30 2.74 R
2945 3012 1.213491 TTCACGTCCACATCACAACG 58.787 50.0 0.0 0.0 40.77 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.027025 AGAAAAAGTCCCTAAAAAGTCCCT 57.973 37.500 0.00 0.00 0.00 4.20
25 26 7.157947 AGAAAAAGTCCCTAAAAAGTCCCTA 57.842 36.000 0.00 0.00 0.00 3.53
26 27 7.232188 AGAAAAAGTCCCTAAAAAGTCCCTAG 58.768 38.462 0.00 0.00 0.00 3.02
27 28 6.775234 AAAAGTCCCTAAAAAGTCCCTAGA 57.225 37.500 0.00 0.00 0.00 2.43
28 29 6.775234 AAAGTCCCTAAAAAGTCCCTAGAA 57.225 37.500 0.00 0.00 0.00 2.10
29 30 6.775234 AAGTCCCTAAAAAGTCCCTAGAAA 57.225 37.500 0.00 0.00 0.00 2.52
30 31 6.124316 AGTCCCTAAAAAGTCCCTAGAAAC 57.876 41.667 0.00 0.00 0.00 2.78
31 32 5.013913 AGTCCCTAAAAAGTCCCTAGAAACC 59.986 44.000 0.00 0.00 0.00 3.27
32 33 4.915194 TCCCTAAAAAGTCCCTAGAAACCA 59.085 41.667 0.00 0.00 0.00 3.67
33 34 5.373257 TCCCTAAAAAGTCCCTAGAAACCAA 59.627 40.000 0.00 0.00 0.00 3.67
34 35 6.072649 CCCTAAAAAGTCCCTAGAAACCAAA 58.927 40.000 0.00 0.00 0.00 3.28
35 36 6.015688 CCCTAAAAAGTCCCTAGAAACCAAAC 60.016 42.308 0.00 0.00 0.00 2.93
36 37 5.509716 AAAAAGTCCCTAGAAACCAAACG 57.490 39.130 0.00 0.00 0.00 3.60
37 38 2.853235 AGTCCCTAGAAACCAAACGG 57.147 50.000 0.00 0.00 0.00 4.44
38 39 1.350019 AGTCCCTAGAAACCAAACGGG 59.650 52.381 0.00 0.00 44.81 5.28
39 40 1.348696 GTCCCTAGAAACCAAACGGGA 59.651 52.381 0.00 0.00 41.15 5.14
40 41 1.626825 TCCCTAGAAACCAAACGGGAG 59.373 52.381 0.00 0.00 41.15 4.30
41 42 1.626825 CCCTAGAAACCAAACGGGAGA 59.373 52.381 0.00 0.00 41.15 3.71
42 43 2.354805 CCCTAGAAACCAAACGGGAGAG 60.355 54.545 0.00 0.00 41.15 3.20
43 44 2.565834 CCTAGAAACCAAACGGGAGAGA 59.434 50.000 0.00 0.00 41.15 3.10
44 45 2.545537 AGAAACCAAACGGGAGAGAC 57.454 50.000 0.00 0.00 41.15 3.36
45 46 2.047830 AGAAACCAAACGGGAGAGACT 58.952 47.619 0.00 0.00 41.15 3.24
46 47 2.438392 AGAAACCAAACGGGAGAGACTT 59.562 45.455 0.00 0.00 41.15 3.01
47 48 3.118000 AGAAACCAAACGGGAGAGACTTT 60.118 43.478 0.00 0.00 41.15 2.66
48 49 3.292492 AACCAAACGGGAGAGACTTTT 57.708 42.857 0.00 0.00 41.15 2.27
49 50 3.292492 ACCAAACGGGAGAGACTTTTT 57.708 42.857 0.00 0.00 41.15 1.94
50 51 3.211865 ACCAAACGGGAGAGACTTTTTC 58.788 45.455 0.00 0.00 41.15 2.29
51 52 3.118000 ACCAAACGGGAGAGACTTTTTCT 60.118 43.478 0.00 0.00 41.15 2.52
52 53 4.102054 ACCAAACGGGAGAGACTTTTTCTA 59.898 41.667 0.00 0.00 41.15 2.10
53 54 4.451435 CCAAACGGGAGAGACTTTTTCTAC 59.549 45.833 0.00 0.00 40.01 2.59
54 55 4.950205 AACGGGAGAGACTTTTTCTACA 57.050 40.909 0.00 0.00 33.22 2.74
55 56 5.485209 AACGGGAGAGACTTTTTCTACAT 57.515 39.130 0.00 0.00 33.22 2.29
56 57 4.822026 ACGGGAGAGACTTTTTCTACATG 58.178 43.478 0.00 0.00 33.22 3.21
57 58 4.184629 CGGGAGAGACTTTTTCTACATGG 58.815 47.826 0.00 0.00 33.22 3.66
58 59 4.081642 CGGGAGAGACTTTTTCTACATGGA 60.082 45.833 0.00 0.00 33.22 3.41
59 60 5.179533 GGGAGAGACTTTTTCTACATGGAC 58.820 45.833 0.00 0.00 33.22 4.02
60 61 5.046231 GGGAGAGACTTTTTCTACATGGACT 60.046 44.000 0.00 0.00 33.22 3.85
61 62 6.154706 GGGAGAGACTTTTTCTACATGGACTA 59.845 42.308 0.00 0.00 33.22 2.59
62 63 7.262048 GGAGAGACTTTTTCTACATGGACTAG 58.738 42.308 0.00 0.00 33.22 2.57
63 64 7.122948 GGAGAGACTTTTTCTACATGGACTAGA 59.877 40.741 0.00 0.00 33.22 2.43
64 65 8.423906 AGAGACTTTTTCTACATGGACTAGAA 57.576 34.615 0.00 0.00 33.22 2.10
65 66 8.871125 AGAGACTTTTTCTACATGGACTAGAAA 58.129 33.333 11.15 11.15 38.08 2.52
66 67 9.490379 GAGACTTTTTCTACATGGACTAGAAAA 57.510 33.333 18.64 18.64 43.60 2.29
71 72 9.847224 TTTTTCTACATGGACTAGAAAAAGACT 57.153 29.630 24.50 0.00 46.05 3.24
72 73 9.490379 TTTTCTACATGGACTAGAAAAAGACTC 57.510 33.333 19.59 0.00 42.90 3.36
73 74 8.423906 TTCTACATGGACTAGAAAAAGACTCT 57.576 34.615 0.00 0.00 29.10 3.24
74 75 9.529823 TTCTACATGGACTAGAAAAAGACTCTA 57.470 33.333 0.00 0.00 29.10 2.43
75 76 8.958506 TCTACATGGACTAGAAAAAGACTCTAC 58.041 37.037 0.00 0.00 0.00 2.59
76 77 7.784470 ACATGGACTAGAAAAAGACTCTACT 57.216 36.000 0.00 0.00 0.00 2.57
77 78 7.607250 ACATGGACTAGAAAAAGACTCTACTG 58.393 38.462 0.00 0.00 0.00 2.74
78 79 6.591750 TGGACTAGAAAAAGACTCTACTGG 57.408 41.667 0.00 0.00 0.00 4.00
79 80 6.312529 TGGACTAGAAAAAGACTCTACTGGA 58.687 40.000 0.00 0.00 0.00 3.86
80 81 6.434652 TGGACTAGAAAAAGACTCTACTGGAG 59.565 42.308 0.00 0.00 46.87 3.86
81 82 6.660094 GGACTAGAAAAAGACTCTACTGGAGA 59.340 42.308 0.00 0.00 44.45 3.71
136 137 4.618920 GTCCTAGGACTTCTGAACCAAA 57.381 45.455 31.12 0.00 41.57 3.28
137 138 4.316645 GTCCTAGGACTTCTGAACCAAAC 58.683 47.826 31.12 3.26 41.57 2.93
138 139 3.971305 TCCTAGGACTTCTGAACCAAACA 59.029 43.478 7.62 0.00 0.00 2.83
139 140 4.065789 CCTAGGACTTCTGAACCAAACAC 58.934 47.826 1.05 0.00 0.00 3.32
140 141 2.932261 AGGACTTCTGAACCAAACACC 58.068 47.619 0.58 0.00 0.00 4.16
141 142 1.954382 GGACTTCTGAACCAAACACCC 59.046 52.381 0.00 0.00 0.00 4.61
142 143 1.954382 GACTTCTGAACCAAACACCCC 59.046 52.381 0.00 0.00 0.00 4.95
143 144 1.328279 CTTCTGAACCAAACACCCCC 58.672 55.000 0.00 0.00 0.00 5.40
144 145 0.930726 TTCTGAACCAAACACCCCCT 59.069 50.000 0.00 0.00 0.00 4.79
145 146 0.930726 TCTGAACCAAACACCCCCTT 59.069 50.000 0.00 0.00 0.00 3.95
154 155 1.420532 AACACCCCCTTAGTTGGCGA 61.421 55.000 0.00 0.00 0.00 5.54
158 159 1.224592 CCCCTTAGTTGGCGAGCAT 59.775 57.895 0.00 0.00 0.00 3.79
159 160 0.468226 CCCCTTAGTTGGCGAGCATA 59.532 55.000 0.00 0.00 0.00 3.14
163 164 2.487934 CTTAGTTGGCGAGCATAGCAT 58.512 47.619 0.00 0.00 39.04 3.79
172 173 2.341257 CGAGCATAGCATATCCGCTTT 58.659 47.619 0.00 0.00 43.56 3.51
173 174 3.511699 CGAGCATAGCATATCCGCTTTA 58.488 45.455 0.00 0.00 43.56 1.85
206 209 5.843673 TTGTCAGAAAATTGGTACTTGCA 57.156 34.783 0.00 0.00 0.00 4.08
335 353 2.993899 CTCATCTCGTTTAACGGCACTT 59.006 45.455 17.59 0.00 42.81 3.16
338 356 3.648339 TCTCGTTTAACGGCACTTACT 57.352 42.857 17.59 0.00 42.81 2.24
351 369 3.821033 GGCACTTACTCCAAATCAACAGT 59.179 43.478 0.00 0.00 0.00 3.55
355 373 7.023575 GCACTTACTCCAAATCAACAGTTATG 58.976 38.462 0.00 0.00 0.00 1.90
374 392 1.406898 TGCAAGAAACCACGCATTCAA 59.593 42.857 0.00 0.00 0.00 2.69
415 433 3.617284 TCACTACACTCTCGATAAGGCA 58.383 45.455 0.00 0.00 0.00 4.75
520 538 5.513788 CCCATTGGATTCCAGAGATTATCGT 60.514 44.000 3.62 0.00 33.81 3.73
562 580 1.467678 CGCAGGGGTAGAGCTATGCT 61.468 60.000 0.00 0.00 43.88 3.79
563 581 0.761802 GCAGGGGTAGAGCTATGCTT 59.238 55.000 0.00 0.00 39.88 3.91
573 591 4.348863 AGAGCTATGCTTTGATGGGTAG 57.651 45.455 0.00 0.00 39.88 3.18
574 592 3.713764 AGAGCTATGCTTTGATGGGTAGT 59.286 43.478 0.00 0.00 39.88 2.73
575 593 4.901849 AGAGCTATGCTTTGATGGGTAGTA 59.098 41.667 0.00 0.00 39.88 1.82
576 594 4.962155 AGCTATGCTTTGATGGGTAGTAC 58.038 43.478 0.00 0.00 33.89 2.73
577 595 3.741344 GCTATGCTTTGATGGGTAGTACG 59.259 47.826 0.00 0.00 0.00 3.67
578 596 3.906720 ATGCTTTGATGGGTAGTACGT 57.093 42.857 0.00 0.00 0.00 3.57
579 597 5.508489 GCTATGCTTTGATGGGTAGTACGTA 60.508 44.000 0.00 0.00 0.00 3.57
580 598 4.380841 TGCTTTGATGGGTAGTACGTAG 57.619 45.455 0.00 0.00 0.00 3.51
581 599 4.018490 TGCTTTGATGGGTAGTACGTAGA 58.982 43.478 0.00 0.00 0.00 2.59
582 600 4.463539 TGCTTTGATGGGTAGTACGTAGAA 59.536 41.667 0.00 0.00 0.00 2.10
583 601 5.041940 GCTTTGATGGGTAGTACGTAGAAG 58.958 45.833 0.00 0.00 0.00 2.85
584 602 5.163581 GCTTTGATGGGTAGTACGTAGAAGA 60.164 44.000 0.00 0.00 0.00 2.87
585 603 6.461231 GCTTTGATGGGTAGTACGTAGAAGAT 60.461 42.308 0.00 0.00 0.00 2.40
586 604 6.387041 TTGATGGGTAGTACGTAGAAGATG 57.613 41.667 0.00 0.00 0.00 2.90
587 605 4.277672 TGATGGGTAGTACGTAGAAGATGC 59.722 45.833 0.00 0.00 0.00 3.91
588 606 3.623703 TGGGTAGTACGTAGAAGATGCA 58.376 45.455 0.00 0.00 0.00 3.96
589 607 3.630769 TGGGTAGTACGTAGAAGATGCAG 59.369 47.826 0.00 0.00 0.00 4.41
590 608 3.550436 GGGTAGTACGTAGAAGATGCAGC 60.550 52.174 0.00 0.00 0.00 5.25
591 609 3.315749 GGTAGTACGTAGAAGATGCAGCT 59.684 47.826 0.00 0.00 0.00 4.24
592 610 3.428746 AGTACGTAGAAGATGCAGCTG 57.571 47.619 4.62 10.11 0.00 4.24
604 622 3.881688 AGATGCAGCTGTATTTGGATCAC 59.118 43.478 18.84 3.41 42.48 3.06
610 628 3.758554 AGCTGTATTTGGATCACACAACC 59.241 43.478 0.00 0.00 0.00 3.77
631 649 3.461773 CCCTGGATCGTGCCGTCT 61.462 66.667 0.00 0.00 0.00 4.18
635 653 0.721718 CTGGATCGTGCCGTCTTTTC 59.278 55.000 0.00 0.00 0.00 2.29
636 654 1.011968 TGGATCGTGCCGTCTTTTCG 61.012 55.000 0.00 0.00 0.00 3.46
674 692 2.364842 AGAGACCGCTCCATGGCT 60.365 61.111 6.96 0.00 42.30 4.75
690 708 0.398381 GGCTGGAGGAGATCTGAGGT 60.398 60.000 0.00 0.00 0.00 3.85
850 868 2.668457 CTCAACTACCAGCAGCTAAACG 59.332 50.000 0.00 0.00 0.00 3.60
966 986 0.693622 TCCTCACTCACTCGTCTCCT 59.306 55.000 0.00 0.00 0.00 3.69
1125 1146 1.803519 CAAGACGCACGAGCTCTCC 60.804 63.158 12.85 0.00 39.10 3.71
1434 1455 1.048724 CCTACTTCGAGCCCATGGGA 61.049 60.000 36.00 10.91 37.50 4.37
1491 1512 5.279206 CCAGGTGCCTACTAATCTCATACTG 60.279 48.000 0.00 0.00 0.00 2.74
1598 1627 7.639113 TTTTGTAATGCAATAGTAGGAAGGG 57.361 36.000 0.00 0.00 36.89 3.95
1599 1628 5.304686 TGTAATGCAATAGTAGGAAGGGG 57.695 43.478 0.00 0.00 0.00 4.79
1600 1629 4.972568 TGTAATGCAATAGTAGGAAGGGGA 59.027 41.667 0.00 0.00 0.00 4.81
1601 1630 4.713792 AATGCAATAGTAGGAAGGGGAG 57.286 45.455 0.00 0.00 0.00 4.30
1602 1631 1.768870 TGCAATAGTAGGAAGGGGAGC 59.231 52.381 0.00 0.00 0.00 4.70
1603 1632 1.072489 GCAATAGTAGGAAGGGGAGCC 59.928 57.143 0.00 0.00 0.00 4.70
1604 1633 2.695585 CAATAGTAGGAAGGGGAGCCT 58.304 52.381 0.00 0.00 38.31 4.58
1605 1634 3.049344 CAATAGTAGGAAGGGGAGCCTT 58.951 50.000 0.00 0.00 35.73 4.35
1606 1635 4.232091 CAATAGTAGGAAGGGGAGCCTTA 58.768 47.826 0.00 0.00 35.73 2.69
1607 1636 2.480642 AGTAGGAAGGGGAGCCTTAG 57.519 55.000 0.00 0.00 35.73 2.18
1608 1637 0.759959 GTAGGAAGGGGAGCCTTAGC 59.240 60.000 0.00 0.00 35.73 3.09
1609 1638 0.759436 TAGGAAGGGGAGCCTTAGCG 60.759 60.000 0.00 0.00 46.67 4.26
1610 1639 2.203084 GAAGGGGAGCCTTAGCGC 60.203 66.667 0.00 0.00 46.67 5.92
1611 1640 3.009115 AAGGGGAGCCTTAGCGCA 61.009 61.111 11.47 0.00 46.67 6.09
1612 1641 2.932130 GAAGGGGAGCCTTAGCGCAG 62.932 65.000 11.47 0.00 46.67 5.18
1613 1642 3.787001 GGGGAGCCTTAGCGCAGT 61.787 66.667 11.47 0.00 46.67 4.40
1614 1643 2.512515 GGGAGCCTTAGCGCAGTG 60.513 66.667 11.47 0.00 46.67 3.66
1615 1644 2.512515 GGAGCCTTAGCGCAGTGG 60.513 66.667 11.47 9.34 46.67 4.00
1616 1645 2.266055 GAGCCTTAGCGCAGTGGT 59.734 61.111 11.47 0.00 46.67 4.16
1617 1646 1.515954 GAGCCTTAGCGCAGTGGTA 59.484 57.895 11.47 0.00 46.67 3.25
1618 1647 0.108329 GAGCCTTAGCGCAGTGGTAA 60.108 55.000 11.47 5.53 46.67 2.85
1619 1648 0.323629 AGCCTTAGCGCAGTGGTAAA 59.676 50.000 11.47 0.00 46.67 2.01
1620 1649 0.727398 GCCTTAGCGCAGTGGTAAAG 59.273 55.000 11.47 2.53 39.86 1.85
1621 1650 0.727398 CCTTAGCGCAGTGGTAAAGC 59.273 55.000 11.47 0.00 39.86 3.51
1622 1651 1.676014 CCTTAGCGCAGTGGTAAAGCT 60.676 52.381 11.47 0.00 39.86 3.74
1623 1652 1.394917 CTTAGCGCAGTGGTAAAGCTG 59.605 52.381 11.47 0.00 39.86 4.24
1628 1657 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
1629 1658 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
1630 1659 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
1631 1660 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
1632 1661 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
1633 1662 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
1634 1663 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
1635 1664 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
1636 1665 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
1637 1666 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
1638 1667 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
1639 1668 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
1640 1669 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
1641 1670 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
1642 1671 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
1654 1683 2.483014 CCATGAGGTCACGGGTTTAA 57.517 50.000 0.00 0.00 0.00 1.52
1655 1684 2.356135 CCATGAGGTCACGGGTTTAAG 58.644 52.381 0.00 0.00 0.00 1.85
1656 1685 2.290071 CCATGAGGTCACGGGTTTAAGT 60.290 50.000 0.00 0.00 0.00 2.24
1657 1686 2.825861 TGAGGTCACGGGTTTAAGTC 57.174 50.000 0.00 0.00 0.00 3.01
1658 1687 1.345415 TGAGGTCACGGGTTTAAGTCC 59.655 52.381 0.00 0.00 0.00 3.85
1659 1688 1.622312 GAGGTCACGGGTTTAAGTCCT 59.378 52.381 0.00 0.00 0.00 3.85
1660 1689 1.346722 AGGTCACGGGTTTAAGTCCTG 59.653 52.381 6.18 6.18 37.36 3.86
1661 1690 1.345415 GGTCACGGGTTTAAGTCCTGA 59.655 52.381 12.56 5.10 35.49 3.86
1662 1691 2.224354 GGTCACGGGTTTAAGTCCTGAA 60.224 50.000 12.56 1.16 35.49 3.02
1663 1692 3.469739 GTCACGGGTTTAAGTCCTGAAA 58.530 45.455 12.56 0.89 35.49 2.69
1664 1693 3.878699 GTCACGGGTTTAAGTCCTGAAAA 59.121 43.478 12.56 0.00 35.49 2.29
1665 1694 3.878699 TCACGGGTTTAAGTCCTGAAAAC 59.121 43.478 12.56 0.00 35.49 2.43
1666 1695 3.628487 CACGGGTTTAAGTCCTGAAAACA 59.372 43.478 12.56 0.00 35.33 2.83
1667 1696 3.881089 ACGGGTTTAAGTCCTGAAAACAG 59.119 43.478 12.56 0.00 35.33 3.16
1668 1697 3.881089 CGGGTTTAAGTCCTGAAAACAGT 59.119 43.478 0.00 0.00 35.33 3.55
1669 1698 4.024302 CGGGTTTAAGTCCTGAAAACAGTC 60.024 45.833 0.00 0.00 35.33 3.51
1670 1699 5.131067 GGGTTTAAGTCCTGAAAACAGTCT 58.869 41.667 0.00 0.00 35.33 3.24
1671 1700 5.238868 GGGTTTAAGTCCTGAAAACAGTCTC 59.761 44.000 0.00 0.00 35.33 3.36
1672 1701 6.056236 GGTTTAAGTCCTGAAAACAGTCTCT 58.944 40.000 0.00 0.00 35.33 3.10
1673 1702 6.542735 GGTTTAAGTCCTGAAAACAGTCTCTT 59.457 38.462 0.00 0.00 35.33 2.85
1674 1703 7.713942 GGTTTAAGTCCTGAAAACAGTCTCTTA 59.286 37.037 0.00 0.00 35.33 2.10
1675 1704 8.549548 GTTTAAGTCCTGAAAACAGTCTCTTAC 58.450 37.037 0.00 0.00 34.12 2.34
1676 1705 5.871396 AGTCCTGAAAACAGTCTCTTACA 57.129 39.130 0.00 0.00 0.00 2.41
1677 1706 5.848406 AGTCCTGAAAACAGTCTCTTACAG 58.152 41.667 0.00 0.00 0.00 2.74
1678 1707 5.598830 AGTCCTGAAAACAGTCTCTTACAGA 59.401 40.000 0.00 0.00 0.00 3.41
1679 1708 6.098409 AGTCCTGAAAACAGTCTCTTACAGAA 59.902 38.462 0.00 0.00 30.72 3.02
1680 1709 6.761714 GTCCTGAAAACAGTCTCTTACAGAAA 59.238 38.462 0.00 0.00 30.72 2.52
1681 1710 7.442666 GTCCTGAAAACAGTCTCTTACAGAAAT 59.557 37.037 0.00 0.00 30.72 2.17
1682 1711 7.442364 TCCTGAAAACAGTCTCTTACAGAAATG 59.558 37.037 0.00 0.00 30.72 2.32
1683 1712 7.227512 CCTGAAAACAGTCTCTTACAGAAATGT 59.772 37.037 0.00 0.00 35.66 2.71
1684 1713 9.261180 CTGAAAACAGTCTCTTACAGAAATGTA 57.739 33.333 0.00 0.00 33.89 2.29
1685 1714 9.261180 TGAAAACAGTCTCTTACAGAAATGTAG 57.739 33.333 0.00 0.00 33.89 2.74
1686 1715 8.608844 AAAACAGTCTCTTACAGAAATGTAGG 57.391 34.615 0.00 0.00 33.89 3.18
1687 1716 6.287589 ACAGTCTCTTACAGAAATGTAGGG 57.712 41.667 0.00 0.00 33.46 3.53
1688 1717 6.017192 ACAGTCTCTTACAGAAATGTAGGGA 58.983 40.000 0.00 0.00 33.46 4.20
1689 1718 6.497259 ACAGTCTCTTACAGAAATGTAGGGAA 59.503 38.462 0.00 0.00 33.46 3.97
1690 1719 7.016268 ACAGTCTCTTACAGAAATGTAGGGAAA 59.984 37.037 0.00 0.00 33.46 3.13
1691 1720 7.547370 CAGTCTCTTACAGAAATGTAGGGAAAG 59.453 40.741 0.00 0.00 30.72 2.62
1692 1721 6.819146 GTCTCTTACAGAAATGTAGGGAAAGG 59.181 42.308 0.00 0.00 30.72 3.11
1693 1722 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
1694 1723 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
1695 1724 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
1696 1725 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
1697 1726 2.310052 AGAAATGTAGGGAAAGGCTGCT 59.690 45.455 0.00 0.00 0.00 4.24
1698 1727 2.907458 AATGTAGGGAAAGGCTGCTT 57.093 45.000 0.00 0.00 0.00 3.91
1699 1728 4.018415 AGAAATGTAGGGAAAGGCTGCTTA 60.018 41.667 0.00 0.00 0.00 3.09
1700 1729 3.567478 ATGTAGGGAAAGGCTGCTTAG 57.433 47.619 0.00 0.00 0.00 2.18
1701 1730 2.546899 TGTAGGGAAAGGCTGCTTAGA 58.453 47.619 0.00 0.00 0.00 2.10
1702 1731 2.236395 TGTAGGGAAAGGCTGCTTAGAC 59.764 50.000 0.00 0.00 0.00 2.59
1703 1732 0.621082 AGGGAAAGGCTGCTTAGACC 59.379 55.000 0.00 0.00 0.00 3.85
1704 1733 0.394488 GGGAAAGGCTGCTTAGACCC 60.394 60.000 0.00 2.45 0.00 4.46
1705 1734 0.328258 GGAAAGGCTGCTTAGACCCA 59.672 55.000 0.00 0.00 0.00 4.51
1706 1735 1.271926 GGAAAGGCTGCTTAGACCCAA 60.272 52.381 0.00 0.00 0.00 4.12
1707 1736 2.514803 GAAAGGCTGCTTAGACCCAAA 58.485 47.619 0.00 0.00 0.00 3.28
1708 1737 2.907458 AAGGCTGCTTAGACCCAAAT 57.093 45.000 0.00 0.00 0.00 2.32
1709 1738 2.907458 AGGCTGCTTAGACCCAAATT 57.093 45.000 0.00 0.00 0.00 1.82
1710 1739 2.450476 AGGCTGCTTAGACCCAAATTG 58.550 47.619 0.00 0.00 0.00 2.32
1711 1740 1.478105 GGCTGCTTAGACCCAAATTGG 59.522 52.381 4.74 4.74 37.25 3.16
1712 1741 2.171003 GCTGCTTAGACCCAAATTGGT 58.829 47.619 11.52 0.00 42.79 3.67
1718 1747 2.563297 GACCCAAATTGGTCGGACC 58.437 57.895 20.36 20.36 44.98 4.46
1719 1748 0.037734 GACCCAAATTGGTCGGACCT 59.962 55.000 26.41 5.90 44.98 3.85
1720 1749 0.481128 ACCCAAATTGGTCGGACCTT 59.519 50.000 26.41 11.89 39.58 3.50
1721 1750 1.133294 ACCCAAATTGGTCGGACCTTT 60.133 47.619 26.41 16.88 39.58 3.11
1722 1751 1.544246 CCCAAATTGGTCGGACCTTTC 59.456 52.381 26.41 2.01 39.58 2.62
1723 1752 1.544246 CCAAATTGGTCGGACCTTTCC 59.456 52.381 26.41 1.56 39.58 3.13
1724 1753 1.544246 CAAATTGGTCGGACCTTTCCC 59.456 52.381 26.41 0.80 39.58 3.97
1725 1754 0.039180 AATTGGTCGGACCTTTCCCC 59.961 55.000 26.41 0.04 39.58 4.81
1726 1755 1.137594 ATTGGTCGGACCTTTCCCCA 61.138 55.000 26.41 2.91 39.58 4.96
1727 1756 1.774894 TTGGTCGGACCTTTCCCCAG 61.775 60.000 26.41 0.00 39.58 4.45
1728 1757 1.916777 GGTCGGACCTTTCCCCAGA 60.917 63.158 19.92 0.00 38.99 3.86
1729 1758 1.272554 GGTCGGACCTTTCCCCAGAT 61.273 60.000 19.92 0.00 38.99 2.90
1730 1759 0.178301 GTCGGACCTTTCCCCAGATC 59.822 60.000 0.00 0.00 38.99 2.75
1731 1760 0.981277 TCGGACCTTTCCCCAGATCC 60.981 60.000 0.00 0.00 38.99 3.36
1732 1761 0.983378 CGGACCTTTCCCCAGATCCT 60.983 60.000 0.00 0.00 38.99 3.24
1733 1762 0.548510 GGACCTTTCCCCAGATCCTG 59.451 60.000 0.00 0.00 35.57 3.86
1734 1763 0.106967 GACCTTTCCCCAGATCCTGC 60.107 60.000 0.00 0.00 0.00 4.85
1735 1764 1.153086 CCTTTCCCCAGATCCTGCG 60.153 63.158 0.00 0.00 0.00 5.18
1736 1765 1.821332 CTTTCCCCAGATCCTGCGC 60.821 63.158 0.00 0.00 0.00 6.09
1737 1766 2.541547 CTTTCCCCAGATCCTGCGCA 62.542 60.000 10.98 10.98 0.00 6.09
1738 1767 2.135903 TTTCCCCAGATCCTGCGCAA 62.136 55.000 13.05 0.00 0.00 4.85
1739 1768 2.045045 CCCCAGATCCTGCGCAAA 60.045 61.111 13.05 2.39 0.00 3.68
1740 1769 2.409870 CCCCAGATCCTGCGCAAAC 61.410 63.158 13.05 2.98 0.00 2.93
1741 1770 2.753966 CCCAGATCCTGCGCAAACG 61.754 63.158 13.05 0.00 44.07 3.60
1742 1771 2.753966 CCAGATCCTGCGCAAACGG 61.754 63.158 13.05 10.09 40.57 4.44
1743 1772 2.436646 AGATCCTGCGCAAACGGG 60.437 61.111 13.05 9.65 40.57 5.28
1748 1777 2.434185 CTGCGCAAACGGGAGCTA 60.434 61.111 13.05 0.00 40.57 3.32
1749 1778 2.740714 CTGCGCAAACGGGAGCTAC 61.741 63.158 13.05 0.00 40.57 3.58
1750 1779 2.740826 GCGCAAACGGGAGCTACA 60.741 61.111 0.30 0.00 40.57 2.74
1751 1780 2.106683 GCGCAAACGGGAGCTACAT 61.107 57.895 0.30 0.00 40.57 2.29
1752 1781 1.715585 CGCAAACGGGAGCTACATG 59.284 57.895 0.00 0.00 34.97 3.21
1753 1782 1.429423 GCAAACGGGAGCTACATGC 59.571 57.895 0.00 0.00 43.29 4.06
1754 1783 1.305219 GCAAACGGGAGCTACATGCA 61.305 55.000 0.00 0.00 45.94 3.96
1755 1784 0.447801 CAAACGGGAGCTACATGCAC 59.552 55.000 0.00 0.00 45.94 4.57
1756 1785 0.324943 AAACGGGAGCTACATGCACT 59.675 50.000 0.00 0.00 45.94 4.40
1757 1786 0.391661 AACGGGAGCTACATGCACTG 60.392 55.000 0.00 0.00 45.94 3.66
1758 1787 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
1759 1788 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
1760 1789 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
1761 1790 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
1762 1791 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
1763 1792 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
1764 1793 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
1765 1794 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
1779 1808 2.031120 GGCTGCCCTGTAATGCAATAA 58.969 47.619 7.66 0.00 36.98 1.40
1811 1874 2.016318 CTCCCAGCGATAATGTTGCAA 58.984 47.619 0.00 0.00 39.90 4.08
2283 2347 2.104331 CGAGACGACCCCATTCGG 59.896 66.667 0.00 0.00 43.58 4.30
2312 2376 4.441695 CGCTCTTCTGGCTCCGCA 62.442 66.667 0.00 0.00 0.00 5.69
2605 2669 4.329545 ATGGCGCTGGACCACGTT 62.330 61.111 7.64 2.38 40.82 3.99
2877 2944 2.595386 GCCGAATAAAAACTGGCTGTG 58.405 47.619 0.00 0.00 42.44 3.66
2945 3012 5.588648 TCGAATGATTTTGATGTACTTCCCC 59.411 40.000 6.32 0.00 0.00 4.81
2957 3024 0.250727 ACTTCCCCGTTGTGATGTGG 60.251 55.000 0.00 0.00 0.00 4.17
2969 3036 1.129251 GTGATGTGGACGTGAATGCTG 59.871 52.381 0.00 0.00 0.00 4.41
2970 3037 1.270785 TGATGTGGACGTGAATGCTGT 60.271 47.619 0.00 0.00 0.00 4.40
2991 3065 6.475402 GCTGTTTGTTGTTATTGCTGTAGTTT 59.525 34.615 0.00 0.00 0.00 2.66
2996 3073 8.988064 TTGTTGTTATTGCTGTAGTTTTGAAA 57.012 26.923 0.00 0.00 0.00 2.69
3088 3206 4.757149 AGATTTGTAAACTCCACTGCAGAC 59.243 41.667 23.35 5.79 0.00 3.51
3141 3268 6.237358 GCACGTGAAAAGTAAAAACAATCGTT 60.237 34.615 22.23 0.00 36.73 3.85
3142 3269 7.044836 GCACGTGAAAAGTAAAAACAATCGTTA 60.045 33.333 22.23 0.00 33.99 3.18
3143 3270 8.458328 CACGTGAAAAGTAAAAACAATCGTTAG 58.542 33.333 10.90 0.00 33.99 2.34
3144 3271 8.177013 ACGTGAAAAGTAAAAACAATCGTTAGT 58.823 29.630 0.00 0.00 33.99 2.24
3145 3272 9.635632 CGTGAAAAGTAAAAACAATCGTTAGTA 57.364 29.630 0.00 0.00 33.99 1.82
3152 3279 9.631452 AGTAAAAACAATCGTTAGTACTAGTCC 57.369 33.333 0.00 0.00 35.02 3.85
3153 3280 9.631452 GTAAAAACAATCGTTAGTACTAGTCCT 57.369 33.333 0.00 0.00 33.99 3.85
3154 3281 8.754230 AAAAACAATCGTTAGTACTAGTCCTC 57.246 34.615 0.00 0.00 33.99 3.71
3155 3282 5.731599 ACAATCGTTAGTACTAGTCCTCG 57.268 43.478 0.00 0.00 0.00 4.63
3285 3417 9.419297 CCATCCGATCTATTATCGAAACTAAAA 57.581 33.333 8.86 0.00 43.59 1.52
3327 3459 6.255215 CACAACATTAGCCGAACGATTAATT 58.745 36.000 0.00 0.00 0.00 1.40
3382 3514 3.493767 AACTCCTCGCTTCCTTTTTCT 57.506 42.857 0.00 0.00 0.00 2.52
3388 3520 5.556915 TCCTCGCTTCCTTTTTCTAATCAA 58.443 37.500 0.00 0.00 0.00 2.57
3499 3632 7.880105 GGTAATACCTATATATAGACCCGCAC 58.120 42.308 19.51 10.22 34.73 5.34
3525 3658 0.748729 CTCGTAGTTCCGCCTCCTCT 60.749 60.000 0.00 0.00 0.00 3.69
3618 3751 2.080693 CCCACACTTGCAGCGTTAATA 58.919 47.619 0.00 0.00 0.00 0.98
3631 3764 4.929808 CAGCGTTAATACTCTCCACAAAGT 59.070 41.667 0.00 0.00 0.00 2.66
3688 3822 1.549037 GGGGTTGCCATAACACCTGAA 60.549 52.381 3.89 0.00 40.53 3.02
3766 3901 1.610673 GAGTCCACCTCTGGGCAGA 60.611 63.158 0.00 0.00 45.80 4.26
3803 3938 6.603201 ACAAATGACGACCAATAATTCTCCAT 59.397 34.615 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.157947 AGGGACTTTTTAGGGACTTTTTCTA 57.842 36.000 0.00 0.00 34.75 2.10
1 2 6.027025 AGGGACTTTTTAGGGACTTTTTCT 57.973 37.500 0.00 0.00 34.75 2.52
2 3 7.229308 TCTAGGGACTTTTTAGGGACTTTTTC 58.771 38.462 0.00 0.00 39.49 2.29
3 4 7.157947 TCTAGGGACTTTTTAGGGACTTTTT 57.842 36.000 0.00 0.00 39.49 1.94
4 5 6.775234 TCTAGGGACTTTTTAGGGACTTTT 57.225 37.500 0.00 0.00 39.49 2.27
5 6 6.775234 TTCTAGGGACTTTTTAGGGACTTT 57.225 37.500 0.00 0.00 39.49 2.66
6 7 6.466904 GGTTTCTAGGGACTTTTTAGGGACTT 60.467 42.308 0.00 0.00 39.49 3.01
7 8 5.013913 GGTTTCTAGGGACTTTTTAGGGACT 59.986 44.000 0.00 0.00 41.75 3.85
8 9 5.221986 TGGTTTCTAGGGACTTTTTAGGGAC 60.222 44.000 0.00 0.00 41.75 4.46
9 10 4.915194 TGGTTTCTAGGGACTTTTTAGGGA 59.085 41.667 0.00 0.00 41.75 4.20
10 11 5.251182 TGGTTTCTAGGGACTTTTTAGGG 57.749 43.478 0.00 0.00 41.75 3.53
11 12 6.293790 CGTTTGGTTTCTAGGGACTTTTTAGG 60.294 42.308 0.00 0.00 41.75 2.69
12 13 6.293790 CCGTTTGGTTTCTAGGGACTTTTTAG 60.294 42.308 0.00 0.00 41.75 1.85
13 14 5.532032 CCGTTTGGTTTCTAGGGACTTTTTA 59.468 40.000 0.00 0.00 41.75 1.52
14 15 4.340097 CCGTTTGGTTTCTAGGGACTTTTT 59.660 41.667 0.00 0.00 41.75 1.94
15 16 3.887110 CCGTTTGGTTTCTAGGGACTTTT 59.113 43.478 0.00 0.00 41.75 2.27
16 17 3.483421 CCGTTTGGTTTCTAGGGACTTT 58.517 45.455 0.00 0.00 41.75 2.66
17 18 2.224695 CCCGTTTGGTTTCTAGGGACTT 60.225 50.000 0.00 0.00 41.26 3.01
18 19 1.350019 CCCGTTTGGTTTCTAGGGACT 59.650 52.381 0.00 0.00 41.26 3.85
19 20 1.348696 TCCCGTTTGGTTTCTAGGGAC 59.651 52.381 0.00 0.00 42.46 4.46
20 21 1.626825 CTCCCGTTTGGTTTCTAGGGA 59.373 52.381 0.80 0.80 44.85 4.20
21 22 1.626825 TCTCCCGTTTGGTTTCTAGGG 59.373 52.381 0.00 0.00 40.16 3.53
22 23 2.565834 TCTCTCCCGTTTGGTTTCTAGG 59.434 50.000 0.00 0.00 34.77 3.02
23 24 3.258622 AGTCTCTCCCGTTTGGTTTCTAG 59.741 47.826 0.00 0.00 34.77 2.43
24 25 3.236896 AGTCTCTCCCGTTTGGTTTCTA 58.763 45.455 0.00 0.00 34.77 2.10
25 26 2.047830 AGTCTCTCCCGTTTGGTTTCT 58.952 47.619 0.00 0.00 34.77 2.52
26 27 2.545537 AGTCTCTCCCGTTTGGTTTC 57.454 50.000 0.00 0.00 34.77 2.78
27 28 3.292492 AAAGTCTCTCCCGTTTGGTTT 57.708 42.857 0.00 0.00 34.77 3.27
28 29 3.292492 AAAAGTCTCTCCCGTTTGGTT 57.708 42.857 0.00 0.00 34.77 3.67
29 30 3.118000 AGAAAAAGTCTCTCCCGTTTGGT 60.118 43.478 0.00 0.00 34.77 3.67
30 31 3.477530 AGAAAAAGTCTCTCCCGTTTGG 58.522 45.455 0.00 0.00 0.00 3.28
31 32 5.054477 TGTAGAAAAAGTCTCTCCCGTTTG 58.946 41.667 0.00 0.00 37.84 2.93
32 33 5.286267 TGTAGAAAAAGTCTCTCCCGTTT 57.714 39.130 0.00 0.00 37.84 3.60
33 34 4.950205 TGTAGAAAAAGTCTCTCCCGTT 57.050 40.909 0.00 0.00 37.84 4.44
34 35 4.322801 CCATGTAGAAAAAGTCTCTCCCGT 60.323 45.833 0.00 0.00 37.84 5.28
35 36 4.081642 TCCATGTAGAAAAAGTCTCTCCCG 60.082 45.833 0.00 0.00 37.84 5.14
36 37 5.046231 AGTCCATGTAGAAAAAGTCTCTCCC 60.046 44.000 0.00 0.00 37.84 4.30
37 38 6.043854 AGTCCATGTAGAAAAAGTCTCTCC 57.956 41.667 0.00 0.00 37.84 3.71
38 39 8.057536 TCTAGTCCATGTAGAAAAAGTCTCTC 57.942 38.462 0.00 0.00 37.84 3.20
39 40 8.423906 TTCTAGTCCATGTAGAAAAAGTCTCT 57.576 34.615 2.62 0.00 37.84 3.10
40 41 9.490379 TTTTCTAGTCCATGTAGAAAAAGTCTC 57.510 33.333 19.59 0.00 46.31 3.36
47 48 8.871125 AGAGTCTTTTTCTAGTCCATGTAGAAA 58.129 33.333 11.15 11.15 42.24 2.52
48 49 8.423906 AGAGTCTTTTTCTAGTCCATGTAGAA 57.576 34.615 1.22 1.22 35.21 2.10
49 50 8.958506 GTAGAGTCTTTTTCTAGTCCATGTAGA 58.041 37.037 0.00 0.00 0.00 2.59
50 51 8.962679 AGTAGAGTCTTTTTCTAGTCCATGTAG 58.037 37.037 0.00 0.00 0.00 2.74
51 52 8.740906 CAGTAGAGTCTTTTTCTAGTCCATGTA 58.259 37.037 0.00 0.00 30.30 2.29
52 53 7.310113 CCAGTAGAGTCTTTTTCTAGTCCATGT 60.310 40.741 0.00 0.00 30.30 3.21
53 54 7.038659 CCAGTAGAGTCTTTTTCTAGTCCATG 58.961 42.308 0.00 0.00 30.30 3.66
54 55 6.954684 TCCAGTAGAGTCTTTTTCTAGTCCAT 59.045 38.462 0.00 0.00 30.30 3.41
55 56 6.312529 TCCAGTAGAGTCTTTTTCTAGTCCA 58.687 40.000 0.00 0.00 30.30 4.02
56 57 6.660094 TCTCCAGTAGAGTCTTTTTCTAGTCC 59.340 42.308 0.00 0.00 43.71 3.85
57 58 7.690952 TCTCCAGTAGAGTCTTTTTCTAGTC 57.309 40.000 0.00 0.00 43.71 2.59
58 59 7.696992 CTCTCCAGTAGAGTCTTTTTCTAGT 57.303 40.000 0.00 0.00 45.85 2.57
115 116 4.202326 TGTTTGGTTCAGAAGTCCTAGGAC 60.202 45.833 31.29 31.29 44.86 3.85
116 117 3.971305 TGTTTGGTTCAGAAGTCCTAGGA 59.029 43.478 7.62 7.62 0.00 2.94
117 118 4.065789 GTGTTTGGTTCAGAAGTCCTAGG 58.934 47.826 0.82 0.82 0.00 3.02
118 119 4.065789 GGTGTTTGGTTCAGAAGTCCTAG 58.934 47.826 0.00 0.00 0.00 3.02
119 120 3.181448 GGGTGTTTGGTTCAGAAGTCCTA 60.181 47.826 0.00 0.00 0.00 2.94
120 121 2.422945 GGGTGTTTGGTTCAGAAGTCCT 60.423 50.000 0.00 0.00 0.00 3.85
121 122 1.954382 GGGTGTTTGGTTCAGAAGTCC 59.046 52.381 0.00 0.00 0.00 3.85
122 123 1.954382 GGGGTGTTTGGTTCAGAAGTC 59.046 52.381 0.00 0.00 0.00 3.01
123 124 1.411074 GGGGGTGTTTGGTTCAGAAGT 60.411 52.381 0.00 0.00 0.00 3.01
124 125 1.133482 AGGGGGTGTTTGGTTCAGAAG 60.133 52.381 0.00 0.00 0.00 2.85
125 126 0.930726 AGGGGGTGTTTGGTTCAGAA 59.069 50.000 0.00 0.00 0.00 3.02
126 127 0.930726 AAGGGGGTGTTTGGTTCAGA 59.069 50.000 0.00 0.00 0.00 3.27
127 128 2.158519 ACTAAGGGGGTGTTTGGTTCAG 60.159 50.000 0.00 0.00 0.00 3.02
128 129 1.854280 ACTAAGGGGGTGTTTGGTTCA 59.146 47.619 0.00 0.00 0.00 3.18
129 130 2.626266 CAACTAAGGGGGTGTTTGGTTC 59.374 50.000 0.00 0.00 0.00 3.62
130 131 2.673258 CAACTAAGGGGGTGTTTGGTT 58.327 47.619 0.00 0.00 0.00 3.67
131 132 1.133294 CCAACTAAGGGGGTGTTTGGT 60.133 52.381 0.00 0.00 0.00 3.67
132 133 1.627864 CCAACTAAGGGGGTGTTTGG 58.372 55.000 0.00 0.00 0.00 3.28
133 134 0.966179 GCCAACTAAGGGGGTGTTTG 59.034 55.000 0.00 0.00 0.00 2.93
134 135 0.538746 CGCCAACTAAGGGGGTGTTT 60.539 55.000 0.00 0.00 37.91 2.83
135 136 1.074248 CGCCAACTAAGGGGGTGTT 59.926 57.895 0.00 0.00 37.91 3.32
136 137 1.838073 CTCGCCAACTAAGGGGGTGT 61.838 60.000 0.00 0.00 41.59 4.16
137 138 1.078426 CTCGCCAACTAAGGGGGTG 60.078 63.158 0.00 0.00 41.59 4.61
138 139 2.967946 GCTCGCCAACTAAGGGGGT 61.968 63.158 0.00 0.00 41.59 4.95
139 140 2.124695 GCTCGCCAACTAAGGGGG 60.125 66.667 0.00 0.00 41.59 5.40
140 141 0.468226 TATGCTCGCCAACTAAGGGG 59.532 55.000 0.00 0.00 42.56 4.79
141 142 1.871080 CTATGCTCGCCAACTAAGGG 58.129 55.000 0.00 0.00 0.00 3.95
142 143 1.221414 GCTATGCTCGCCAACTAAGG 58.779 55.000 0.00 0.00 0.00 2.69
143 144 1.939974 TGCTATGCTCGCCAACTAAG 58.060 50.000 0.00 0.00 0.00 2.18
144 145 2.620251 ATGCTATGCTCGCCAACTAA 57.380 45.000 0.00 0.00 0.00 2.24
145 146 3.368427 GGATATGCTATGCTCGCCAACTA 60.368 47.826 0.00 0.00 0.00 2.24
154 155 6.227298 ACTATAAAGCGGATATGCTATGCT 57.773 37.500 0.00 0.00 46.60 3.79
184 185 5.843673 TGCAAGTACCAATTTTCTGACAA 57.156 34.783 0.00 0.00 0.00 3.18
206 209 7.775053 TGTCTAAGGATGGCAAATTTAGTTT 57.225 32.000 0.00 0.00 0.00 2.66
307 325 5.220172 GCCGTTAAACGAGATGAGTACTTTC 60.220 44.000 0.00 0.00 46.05 2.62
335 353 6.939730 TCTTGCATAACTGTTGATTTGGAGTA 59.060 34.615 2.69 0.00 0.00 2.59
338 356 6.647334 TTCTTGCATAACTGTTGATTTGGA 57.353 33.333 2.69 0.00 0.00 3.53
351 369 3.254411 TGAATGCGTGGTTTCTTGCATAA 59.746 39.130 0.00 0.00 46.60 1.90
355 373 2.132740 TTGAATGCGTGGTTTCTTGC 57.867 45.000 0.00 0.00 0.00 4.01
374 392 6.882656 AGTGAACTAGTGCATTGATGAGTAT 58.117 36.000 6.88 0.00 0.00 2.12
520 538 3.290710 AGTTTGAAGCAGCTTTCCTTCA 58.709 40.909 9.62 14.14 43.98 3.02
562 580 6.682113 GCATCTTCTACGTACTACCCATCAAA 60.682 42.308 0.00 0.00 0.00 2.69
563 581 5.221185 GCATCTTCTACGTACTACCCATCAA 60.221 44.000 0.00 0.00 0.00 2.57
573 591 3.152261 ACAGCTGCATCTTCTACGTAC 57.848 47.619 15.27 0.00 0.00 3.67
574 592 5.515797 AATACAGCTGCATCTTCTACGTA 57.484 39.130 15.27 0.00 0.00 3.57
575 593 4.392921 AATACAGCTGCATCTTCTACGT 57.607 40.909 15.27 0.00 0.00 3.57
576 594 4.025396 CCAAATACAGCTGCATCTTCTACG 60.025 45.833 15.27 0.00 0.00 3.51
577 595 5.118990 TCCAAATACAGCTGCATCTTCTAC 58.881 41.667 15.27 0.00 0.00 2.59
578 596 5.357742 TCCAAATACAGCTGCATCTTCTA 57.642 39.130 15.27 0.00 0.00 2.10
579 597 4.226427 TCCAAATACAGCTGCATCTTCT 57.774 40.909 15.27 0.00 0.00 2.85
580 598 4.577693 TGATCCAAATACAGCTGCATCTTC 59.422 41.667 15.27 1.76 0.00 2.87
581 599 4.337555 GTGATCCAAATACAGCTGCATCTT 59.662 41.667 15.27 1.25 0.00 2.40
582 600 3.881688 GTGATCCAAATACAGCTGCATCT 59.118 43.478 15.27 0.00 0.00 2.90
583 601 3.628942 TGTGATCCAAATACAGCTGCATC 59.371 43.478 15.27 4.82 0.00 3.91
584 602 3.379372 GTGTGATCCAAATACAGCTGCAT 59.621 43.478 15.27 2.79 0.00 3.96
585 603 2.749076 GTGTGATCCAAATACAGCTGCA 59.251 45.455 15.27 0.00 0.00 4.41
586 604 2.749076 TGTGTGATCCAAATACAGCTGC 59.251 45.455 15.27 0.00 0.00 5.25
587 605 4.379813 GGTTGTGTGATCCAAATACAGCTG 60.380 45.833 13.48 13.48 0.00 4.24
588 606 3.758554 GGTTGTGTGATCCAAATACAGCT 59.241 43.478 0.00 0.00 0.00 4.24
589 607 3.119495 GGGTTGTGTGATCCAAATACAGC 60.119 47.826 0.00 0.00 0.00 4.40
590 608 4.078537 TGGGTTGTGTGATCCAAATACAG 58.921 43.478 0.00 0.00 0.00 2.74
591 609 4.105754 TGGGTTGTGTGATCCAAATACA 57.894 40.909 0.00 0.00 0.00 2.29
592 610 4.097892 GGATGGGTTGTGTGATCCAAATAC 59.902 45.833 0.00 0.00 35.39 1.89
604 622 0.464373 CGATCCAGGGATGGGTTGTG 60.464 60.000 5.35 0.00 34.60 3.33
610 628 2.111878 GGCACGATCCAGGGATGG 59.888 66.667 5.35 7.18 34.60 3.51
631 649 1.266718 GCTGAATCTGCACACCGAAAA 59.733 47.619 7.25 0.00 0.00 2.29
635 653 1.568612 AACGCTGAATCTGCACACCG 61.569 55.000 12.43 0.00 0.00 4.94
636 654 0.110056 CAACGCTGAATCTGCACACC 60.110 55.000 12.43 0.00 0.00 4.16
674 692 2.928036 TTGACCTCAGATCTCCTCCA 57.072 50.000 0.00 0.00 0.00 3.86
690 708 0.452184 GGAGCTCTCGTCACGATTGA 59.548 55.000 14.64 0.00 34.61 2.57
966 986 2.573869 CGCGCAGAGGAAGGAGAA 59.426 61.111 8.75 0.00 0.00 2.87
1302 1323 1.265236 TGCATTTGACAATCCACCCC 58.735 50.000 0.00 0.00 0.00 4.95
1434 1455 1.689273 GACCAGATGTAAGCCTCGGAT 59.311 52.381 0.00 0.00 0.00 4.18
1491 1512 4.685169 TGAAGCATTGAACGGAAGAATC 57.315 40.909 0.00 0.00 0.00 2.52
1580 1609 3.181439 GCTCCCCTTCCTACTATTGCATT 60.181 47.826 0.00 0.00 0.00 3.56
1581 1610 2.373502 GCTCCCCTTCCTACTATTGCAT 59.626 50.000 0.00 0.00 0.00 3.96
1582 1611 1.768870 GCTCCCCTTCCTACTATTGCA 59.231 52.381 0.00 0.00 0.00 4.08
1583 1612 1.072489 GGCTCCCCTTCCTACTATTGC 59.928 57.143 0.00 0.00 0.00 3.56
1584 1613 2.695585 AGGCTCCCCTTCCTACTATTG 58.304 52.381 0.00 0.00 38.74 1.90
1595 1624 3.474570 CTGCGCTAAGGCTCCCCT 61.475 66.667 9.73 0.00 45.77 4.79
1596 1625 3.787001 ACTGCGCTAAGGCTCCCC 61.787 66.667 9.73 0.00 36.09 4.81
1597 1626 2.512515 CACTGCGCTAAGGCTCCC 60.513 66.667 9.73 0.00 36.09 4.30
1598 1627 1.956629 TACCACTGCGCTAAGGCTCC 61.957 60.000 9.73 0.00 36.09 4.70
1599 1628 0.108329 TTACCACTGCGCTAAGGCTC 60.108 55.000 9.73 0.00 36.09 4.70
1600 1629 0.323629 TTTACCACTGCGCTAAGGCT 59.676 50.000 9.73 1.47 36.09 4.58
1601 1630 0.727398 CTTTACCACTGCGCTAAGGC 59.273 55.000 9.73 0.00 0.00 4.35
1602 1631 0.727398 GCTTTACCACTGCGCTAAGG 59.273 55.000 9.73 10.10 0.00 2.69
1603 1632 1.394917 CAGCTTTACCACTGCGCTAAG 59.605 52.381 9.73 0.00 0.00 2.18
1604 1633 1.438651 CAGCTTTACCACTGCGCTAA 58.561 50.000 9.73 0.00 0.00 3.09
1605 1634 3.137484 CAGCTTTACCACTGCGCTA 57.863 52.632 9.73 0.00 0.00 4.26
1606 1635 3.972227 CAGCTTTACCACTGCGCT 58.028 55.556 9.73 0.00 0.00 5.92
1610 1639 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
1611 1640 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
1612 1641 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
1613 1642 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
1614 1643 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
1615 1644 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
1616 1645 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
1617 1646 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
1618 1647 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
1619 1648 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
1620 1649 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
1621 1650 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
1622 1651 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
1623 1652 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
1624 1653 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
1625 1654 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
1636 1665 3.000727 GACTTAAACCCGTGACCTCATG 58.999 50.000 0.00 0.00 0.00 3.07
1637 1666 2.027469 GGACTTAAACCCGTGACCTCAT 60.027 50.000 0.00 0.00 0.00 2.90
1638 1667 1.345415 GGACTTAAACCCGTGACCTCA 59.655 52.381 0.00 0.00 0.00 3.86
1639 1668 1.622312 AGGACTTAAACCCGTGACCTC 59.378 52.381 0.00 0.00 0.00 3.85
1640 1669 1.346722 CAGGACTTAAACCCGTGACCT 59.653 52.381 0.00 0.00 0.00 3.85
1641 1670 1.345415 TCAGGACTTAAACCCGTGACC 59.655 52.381 0.00 0.00 0.00 4.02
1642 1671 2.825861 TCAGGACTTAAACCCGTGAC 57.174 50.000 0.00 0.00 0.00 3.67
1643 1672 3.842007 TTTCAGGACTTAAACCCGTGA 57.158 42.857 0.00 0.00 0.00 4.35
1644 1673 3.628487 TGTTTTCAGGACTTAAACCCGTG 59.372 43.478 0.00 0.00 32.25 4.94
1645 1674 3.881089 CTGTTTTCAGGACTTAAACCCGT 59.119 43.478 0.00 0.00 43.61 5.28
1646 1675 4.483476 CTGTTTTCAGGACTTAAACCCG 57.517 45.455 0.00 0.00 43.61 5.28
1651 1680 7.926555 CTGTAAGAGACTGTTTTCAGGACTTAA 59.073 37.037 0.00 0.00 44.78 1.85
1652 1681 7.287005 TCTGTAAGAGACTGTTTTCAGGACTTA 59.713 37.037 13.26 0.00 45.27 2.24
1653 1682 6.098409 TCTGTAAGAGACTGTTTTCAGGACTT 59.902 38.462 13.26 0.00 45.27 3.01
1654 1683 5.598830 TCTGTAAGAGACTGTTTTCAGGACT 59.401 40.000 13.26 0.00 45.27 3.85
1655 1684 5.844004 TCTGTAAGAGACTGTTTTCAGGAC 58.156 41.667 13.26 0.00 45.27 3.85
1670 1699 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
1671 1700 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
1672 1701 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
1673 1702 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
1674 1703 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
1675 1704 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
1676 1705 2.310052 AGCAGCCTTTCCCTACATTTCT 59.690 45.455 0.00 0.00 0.00 2.52
1677 1706 2.728007 AGCAGCCTTTCCCTACATTTC 58.272 47.619 0.00 0.00 0.00 2.17
1678 1707 2.907458 AGCAGCCTTTCCCTACATTT 57.093 45.000 0.00 0.00 0.00 2.32
1679 1708 2.907458 AAGCAGCCTTTCCCTACATT 57.093 45.000 0.00 0.00 0.00 2.71
1680 1709 3.115390 TCTAAGCAGCCTTTCCCTACAT 58.885 45.455 0.00 0.00 32.47 2.29
1681 1710 2.236395 GTCTAAGCAGCCTTTCCCTACA 59.764 50.000 0.00 0.00 32.47 2.74
1682 1711 2.420269 GGTCTAAGCAGCCTTTCCCTAC 60.420 54.545 0.00 0.00 32.47 3.18
1683 1712 1.838077 GGTCTAAGCAGCCTTTCCCTA 59.162 52.381 0.00 0.00 32.47 3.53
1684 1713 0.621082 GGTCTAAGCAGCCTTTCCCT 59.379 55.000 0.00 0.00 32.47 4.20
1685 1714 0.394488 GGGTCTAAGCAGCCTTTCCC 60.394 60.000 0.00 0.00 32.45 3.97
1686 1715 0.328258 TGGGTCTAAGCAGCCTTTCC 59.672 55.000 0.00 0.00 34.76 3.13
1687 1716 2.200373 TTGGGTCTAAGCAGCCTTTC 57.800 50.000 0.00 0.00 34.76 2.62
1688 1717 2.675658 TTTGGGTCTAAGCAGCCTTT 57.324 45.000 0.00 0.00 34.76 3.11
1689 1718 2.827921 CAATTTGGGTCTAAGCAGCCTT 59.172 45.455 0.00 0.00 34.76 4.35
1690 1719 2.450476 CAATTTGGGTCTAAGCAGCCT 58.550 47.619 0.00 0.00 34.76 4.58
1691 1720 1.478105 CCAATTTGGGTCTAAGCAGCC 59.522 52.381 7.60 0.00 32.67 4.85
1692 1721 2.171003 ACCAATTTGGGTCTAAGCAGC 58.829 47.619 19.39 0.00 43.37 5.25
1701 1730 0.481128 AAGGTCCGACCAATTTGGGT 59.519 50.000 19.95 5.41 43.37 4.51
1702 1731 1.544246 GAAAGGTCCGACCAATTTGGG 59.456 52.381 19.95 2.75 43.37 4.12
1703 1732 1.544246 GGAAAGGTCCGACCAATTTGG 59.456 52.381 19.95 14.02 41.95 3.28
1704 1733 1.544246 GGGAAAGGTCCGACCAATTTG 59.456 52.381 19.95 0.00 46.04 2.32
1705 1734 1.549265 GGGGAAAGGTCCGACCAATTT 60.549 52.381 19.95 11.88 46.04 1.82
1706 1735 0.039180 GGGGAAAGGTCCGACCAATT 59.961 55.000 19.95 13.50 46.04 2.32
1707 1736 1.137594 TGGGGAAAGGTCCGACCAAT 61.138 55.000 19.95 7.56 46.04 3.16
1708 1737 1.770927 TGGGGAAAGGTCCGACCAA 60.771 57.895 19.95 0.00 46.04 3.67
1709 1738 2.122324 TGGGGAAAGGTCCGACCA 60.122 61.111 19.95 0.00 46.04 4.02
1710 1739 1.272554 ATCTGGGGAAAGGTCCGACC 61.273 60.000 9.81 9.81 46.04 4.79
1711 1740 0.178301 GATCTGGGGAAAGGTCCGAC 59.822 60.000 0.00 0.00 46.04 4.79
1712 1741 0.981277 GGATCTGGGGAAAGGTCCGA 60.981 60.000 0.00 0.00 46.04 4.55
1713 1742 1.527370 GGATCTGGGGAAAGGTCCG 59.473 63.158 0.00 0.00 46.04 4.79
1714 1743 0.548510 CAGGATCTGGGGAAAGGTCC 59.451 60.000 0.00 0.00 46.42 4.46
1715 1744 0.106967 GCAGGATCTGGGGAAAGGTC 60.107 60.000 0.00 0.00 31.21 3.85
1716 1745 1.915078 CGCAGGATCTGGGGAAAGGT 61.915 60.000 4.35 0.00 40.11 3.50
1717 1746 1.153086 CGCAGGATCTGGGGAAAGG 60.153 63.158 4.35 0.00 40.11 3.11
1718 1747 1.821332 GCGCAGGATCTGGGGAAAG 60.821 63.158 0.30 0.00 43.28 2.62
1719 1748 2.272146 GCGCAGGATCTGGGGAAA 59.728 61.111 0.30 0.00 43.28 3.13
1720 1749 3.008517 TGCGCAGGATCTGGGGAA 61.009 61.111 5.66 0.00 41.12 3.97
1721 1750 2.601702 TTTGCGCAGGATCTGGGGA 61.602 57.895 11.31 7.89 43.28 4.81
1722 1751 2.045045 TTTGCGCAGGATCTGGGG 60.045 61.111 11.31 4.70 43.28 4.96
1723 1752 2.753966 CGTTTGCGCAGGATCTGGG 61.754 63.158 11.31 7.48 45.35 4.45
1724 1753 2.753966 CCGTTTGCGCAGGATCTGG 61.754 63.158 11.31 4.44 36.67 3.86
1725 1754 2.753966 CCCGTTTGCGCAGGATCTG 61.754 63.158 15.29 1.64 36.67 2.90
1726 1755 2.436646 CCCGTTTGCGCAGGATCT 60.437 61.111 15.29 0.00 36.67 2.75
1727 1756 2.435938 TCCCGTTTGCGCAGGATC 60.436 61.111 15.29 4.68 36.67 3.36
1728 1757 2.436646 CTCCCGTTTGCGCAGGAT 60.437 61.111 15.63 0.00 36.67 3.24
1730 1759 3.950794 TAGCTCCCGTTTGCGCAGG 62.951 63.158 11.31 8.90 36.67 4.85
1731 1760 2.434185 TAGCTCCCGTTTGCGCAG 60.434 61.111 11.31 0.00 36.67 5.18
1732 1761 2.740826 GTAGCTCCCGTTTGCGCA 60.741 61.111 5.66 5.66 36.67 6.09
1733 1762 2.106683 ATGTAGCTCCCGTTTGCGC 61.107 57.895 0.00 0.00 36.67 6.09
1734 1763 1.715585 CATGTAGCTCCCGTTTGCG 59.284 57.895 0.00 0.00 37.95 4.85
1735 1764 1.305219 TGCATGTAGCTCCCGTTTGC 61.305 55.000 0.00 0.00 45.94 3.68
1736 1765 0.447801 GTGCATGTAGCTCCCGTTTG 59.552 55.000 0.00 0.00 45.94 2.93
1737 1766 0.324943 AGTGCATGTAGCTCCCGTTT 59.675 50.000 0.00 0.00 45.94 3.60
1738 1767 0.391661 CAGTGCATGTAGCTCCCGTT 60.392 55.000 0.00 0.00 45.94 4.44
1739 1768 1.219124 CAGTGCATGTAGCTCCCGT 59.781 57.895 0.00 0.00 45.94 5.28
1740 1769 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
1741 1770 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
1742 1771 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
1743 1772 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
1744 1773 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
1745 1774 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
1746 1775 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
1747 1776 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
1758 1787 1.044790 ATTGCATTACAGGGCAGCCC 61.045 55.000 24.90 24.90 45.90 5.19
1759 1788 1.691196 TATTGCATTACAGGGCAGCC 58.309 50.000 1.26 1.26 41.68 4.85
1760 1789 4.616835 GCTATTATTGCATTACAGGGCAGC 60.617 45.833 0.00 0.00 41.68 5.25
1761 1790 4.520111 TGCTATTATTGCATTACAGGGCAG 59.480 41.667 0.00 0.00 41.68 4.85
1762 1791 4.468713 TGCTATTATTGCATTACAGGGCA 58.531 39.130 0.00 0.00 38.46 5.36
1763 1792 4.616835 GCTGCTATTATTGCATTACAGGGC 60.617 45.833 1.42 0.00 39.86 5.19
1764 1793 4.378770 CGCTGCTATTATTGCATTACAGGG 60.379 45.833 1.42 0.00 39.86 4.45
1765 1794 4.214119 ACGCTGCTATTATTGCATTACAGG 59.786 41.667 1.42 0.00 39.86 4.00
1766 1795 5.348418 ACGCTGCTATTATTGCATTACAG 57.652 39.130 1.42 0.00 39.86 2.74
1767 1796 5.509771 CAACGCTGCTATTATTGCATTACA 58.490 37.500 1.42 0.00 39.86 2.41
1768 1797 4.379793 GCAACGCTGCTATTATTGCATTAC 59.620 41.667 2.93 0.00 45.74 1.89
1769 1798 4.536065 GCAACGCTGCTATTATTGCATTA 58.464 39.130 2.93 0.00 45.74 1.90
1811 1874 5.441718 TTCAATTCTTGGAGCTGTCCTAT 57.558 39.130 0.00 0.00 44.30 2.57
1837 1900 2.224185 TGACGTGCAACTACTCCACAAT 60.224 45.455 0.00 0.00 31.75 2.71
2077 2141 2.070650 GTGGAGGAAGGGCGGGTAT 61.071 63.158 0.00 0.00 0.00 2.73
2212 2276 3.047877 GCGGGGAAGTGGAACGTG 61.048 66.667 0.00 0.00 45.86 4.49
2245 2309 1.680651 CTCGAGGGAGGACAGCAGT 60.681 63.158 3.91 0.00 36.61 4.40
2564 2628 0.389948 GTGAACTCTGGCCCGTACAG 60.390 60.000 0.00 0.00 37.30 2.74
2675 2739 2.299727 ATCACGATCCCCTCTCCGGT 62.300 60.000 0.00 0.00 0.00 5.28
2877 2944 3.663493 GCGAACATACAGTGAAACCGTTC 60.663 47.826 0.00 1.78 37.80 3.95
2945 3012 1.213491 TTCACGTCCACATCACAACG 58.787 50.000 0.00 0.00 40.77 4.10
2957 3024 3.065019 ACAACAAACAGCATTCACGTC 57.935 42.857 0.00 0.00 0.00 4.34
2969 3036 8.401046 TCAAAACTACAGCAATAACAACAAAC 57.599 30.769 0.00 0.00 0.00 2.93
2970 3037 8.988064 TTCAAAACTACAGCAATAACAACAAA 57.012 26.923 0.00 0.00 0.00 2.83
3072 3190 2.869801 CAAACGTCTGCAGTGGAGTTTA 59.130 45.455 14.67 0.00 31.63 2.01
3285 3417 1.408702 GTGGCCCATACGATTGCAAAT 59.591 47.619 1.71 0.00 0.00 2.32
3382 3514 6.126863 AGACAGGTCTTCAATGGTTGATTA 57.873 37.500 0.00 0.00 39.84 1.75
3388 3520 2.625639 AGGAGACAGGTCTTCAATGGT 58.374 47.619 10.24 0.00 40.61 3.55
3499 3632 1.756375 GCGGAACTACGAGCATGCAG 61.756 60.000 21.98 15.84 35.47 4.41
3525 3658 3.570550 ACATTGGGCTTTGTAAAAGCGTA 59.429 39.130 16.20 6.94 43.89 4.42
3618 3751 2.549754 CGATGCAAACTTTGTGGAGAGT 59.450 45.455 3.48 0.00 0.00 3.24
3659 3792 3.647771 GGCAACCCCCTCCTTCGT 61.648 66.667 0.00 0.00 0.00 3.85
3721 3855 7.597288 AAAATAAAGGTAAAGGTCTGCTGTT 57.403 32.000 0.00 0.00 0.00 3.16
3766 3901 4.616802 GTCGTCATTTGTCGCAATTCAATT 59.383 37.500 0.00 0.00 0.00 2.32
3803 3938 3.196901 TGTCTCGGCCTCTGCTAATTTTA 59.803 43.478 0.00 0.00 37.74 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.