Multiple sequence alignment - TraesCS5B01G388700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G388700 chr5B 100.000 3485 0 0 1 3485 567583518 567580034 0.000000e+00 6436
1 TraesCS5B01G388700 chr5B 76.751 357 70 9 1854 2208 571480910 571481255 1.650000e-43 187
2 TraesCS5B01G388700 chr5A 93.194 2101 92 17 823 2897 581574509 581572434 0.000000e+00 3040
3 TraesCS5B01G388700 chr5A 93.333 210 14 0 3242 3451 581572059 581571850 9.390000e-81 311
4 TraesCS5B01G388700 chr5A 76.190 357 70 11 1855 2208 584717191 584717535 1.290000e-39 174
5 TraesCS5B01G388700 chr5D 96.583 1785 60 1 923 2707 461605116 461603333 0.000000e+00 2957
6 TraesCS5B01G388700 chr5D 94.762 210 11 0 3242 3451 461571933 461571724 9.330000e-86 327
7 TraesCS5B01G388700 chr5D 85.185 162 22 2 2048 2208 464325790 464325950 7.740000e-37 165
8 TraesCS5B01G388700 chr6B 98.663 823 10 1 1 822 626212559 626213381 0.000000e+00 1458
9 TraesCS5B01G388700 chr7A 98.171 820 14 1 1 820 31598532 31597714 0.000000e+00 1430
10 TraesCS5B01G388700 chr7A 97.694 824 19 0 1 824 680916025 680916848 0.000000e+00 1417
11 TraesCS5B01G388700 chr7A 96.368 826 28 2 1 826 6652829 6652006 0.000000e+00 1358
12 TraesCS5B01G388700 chr7A 88.088 319 36 2 2925 3242 508807778 508807461 9.130000e-101 377
13 TraesCS5B01G388700 chr7A 78.443 167 36 0 2030 2196 176285092 176284926 3.680000e-20 110
14 TraesCS5B01G388700 chr4A 96.489 826 28 1 1 826 5408454 5407630 0.000000e+00 1363
15 TraesCS5B01G388700 chr1A 96.377 828 28 2 1 827 499619021 499618195 0.000000e+00 1362
16 TraesCS5B01G388700 chr1A 96.154 832 30 2 1 832 570225156 570224327 0.000000e+00 1358
17 TraesCS5B01G388700 chr1A 96.472 822 28 1 1 822 559297645 559296825 0.000000e+00 1356
18 TraesCS5B01G388700 chr6A 96.252 827 31 0 1 827 45759762 45758936 0.000000e+00 1356
19 TraesCS5B01G388700 chr6A 89.130 322 32 3 2920 3240 575277138 575277457 7.010000e-107 398
20 TraesCS5B01G388700 chr4D 89.720 321 31 2 2925 3244 392731877 392732196 3.240000e-110 409
21 TraesCS5B01G388700 chr2A 88.820 322 33 3 2925 3244 150121299 150120979 3.260000e-105 392
22 TraesCS5B01G388700 chr2A 77.193 171 39 0 2027 2197 528170587 528170757 2.210000e-17 100
23 TraesCS5B01G388700 chr2B 88.750 320 30 5 2925 3240 380647904 380648221 1.520000e-103 387
24 TraesCS5B01G388700 chr2B 88.365 318 35 2 2922 3238 433112969 433113285 7.060000e-102 381
25 TraesCS5B01G388700 chr2B 87.812 320 32 6 2925 3240 380820297 380820613 5.500000e-98 368
26 TraesCS5B01G388700 chr7D 87.421 318 36 4 2925 3240 382726964 382726649 2.560000e-96 363
27 TraesCS5B01G388700 chr7D 78.363 171 37 0 2030 2200 174334513 174334343 1.020000e-20 111
28 TraesCS5B01G388700 chr1D 87.307 323 31 9 2921 3240 264166090 264165775 9.200000e-96 361
29 TraesCS5B01G388700 chr2D 82.877 146 21 4 2024 2167 5268271 5268414 1.020000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G388700 chr5B 567580034 567583518 3484 True 6436.0 6436 100.0000 1 3485 1 chr5B.!!$R1 3484
1 TraesCS5B01G388700 chr5A 581571850 581574509 2659 True 1675.5 3040 93.2635 823 3451 2 chr5A.!!$R1 2628
2 TraesCS5B01G388700 chr5D 461603333 461605116 1783 True 2957.0 2957 96.5830 923 2707 1 chr5D.!!$R2 1784
3 TraesCS5B01G388700 chr6B 626212559 626213381 822 False 1458.0 1458 98.6630 1 822 1 chr6B.!!$F1 821
4 TraesCS5B01G388700 chr7A 31597714 31598532 818 True 1430.0 1430 98.1710 1 820 1 chr7A.!!$R2 819
5 TraesCS5B01G388700 chr7A 680916025 680916848 823 False 1417.0 1417 97.6940 1 824 1 chr7A.!!$F1 823
6 TraesCS5B01G388700 chr7A 6652006 6652829 823 True 1358.0 1358 96.3680 1 826 1 chr7A.!!$R1 825
7 TraesCS5B01G388700 chr4A 5407630 5408454 824 True 1363.0 1363 96.4890 1 826 1 chr4A.!!$R1 825
8 TraesCS5B01G388700 chr1A 499618195 499619021 826 True 1362.0 1362 96.3770 1 827 1 chr1A.!!$R1 826
9 TraesCS5B01G388700 chr1A 570224327 570225156 829 True 1358.0 1358 96.1540 1 832 1 chr1A.!!$R3 831
10 TraesCS5B01G388700 chr1A 559296825 559297645 820 True 1356.0 1356 96.4720 1 822 1 chr1A.!!$R2 821
11 TraesCS5B01G388700 chr6A 45758936 45759762 826 True 1356.0 1356 96.2520 1 827 1 chr6A.!!$R1 826

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
911 930 0.102481 GAGCGAGATTGGCGTTAGGA 59.898 55.0 0.0 0.0 35.0 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2738 2766 0.971386 AAAAACATGAGCCAGCTGGG 59.029 50.0 33.46 18.83 40.85 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.396139 ATTTGCCATCTCGCCCACAT 60.396 50.000 0.00 0.00 0.00 3.21
44 45 3.410628 ATCTCGCCCACATGCCCA 61.411 61.111 0.00 0.00 0.00 5.36
105 106 2.689785 GCAGCGCACATGGCAACTA 61.690 57.895 11.47 0.00 45.17 2.24
251 253 2.871022 GTTGCCATGTGTTTTTGCATGA 59.129 40.909 0.00 0.00 43.60 3.07
336 338 7.121168 CAGATGGCAACTCTTCCTTTTTACATA 59.879 37.037 0.00 0.00 37.61 2.29
643 646 2.220615 CTGACATACGGGCGTGTGGA 62.221 60.000 0.00 0.00 40.75 4.02
687 690 1.666011 GCGTGTGAGAGGGTTCAGA 59.334 57.895 0.00 0.00 0.00 3.27
862 865 3.721706 CCTGAGACCTGGTGGGCC 61.722 72.222 2.82 0.00 44.45 5.80
884 887 4.996434 GGCTCGGATCCCATGCGG 62.996 72.222 6.06 0.00 44.64 5.69
900 903 2.094659 CGGTTTGTGCGAGCGAGAT 61.095 57.895 0.00 0.00 40.15 2.75
911 930 0.102481 GAGCGAGATTGGCGTTAGGA 59.898 55.000 0.00 0.00 35.00 2.94
914 933 2.364324 AGCGAGATTGGCGTTAGGAATA 59.636 45.455 0.00 0.00 35.00 1.75
1104 1123 2.202797 CACCTCATCCCGCTGACG 60.203 66.667 0.00 0.00 39.67 4.35
1797 1816 3.751246 CCGTTGGACTCCGCCGTA 61.751 66.667 5.71 0.00 0.00 4.02
1839 1858 1.550327 TGGACTGTCTAGAGTGGCTG 58.450 55.000 7.85 0.00 0.00 4.85
1902 1921 1.174712 GCTGGGCTTGCTTCTCAACA 61.175 55.000 0.00 0.00 0.00 3.33
1914 1933 1.811266 CTCAACACGCCAGATCCGG 60.811 63.158 0.00 0.00 0.00 5.14
2370 2389 4.792804 GCAGGGGAGCTGGCTGAC 62.793 72.222 0.00 0.00 0.00 3.51
2451 2470 2.539953 CGACGATCTGACTGAGGCTAAC 60.540 54.545 0.00 0.00 0.00 2.34
2474 2493 2.357034 GAGGGTTCGCAGCAACGA 60.357 61.111 0.00 0.00 41.04 3.85
2517 2542 7.042187 GCTCAGTGTAATCTAGTTTCATGATGG 60.042 40.741 0.00 0.00 0.00 3.51
2560 2588 2.030805 CACTAGGAAAAGTGCCTGTTGC 60.031 50.000 0.00 0.00 40.40 4.17
2585 2613 9.143155 GCAAGGGGAGAAAATTATATTAAAGGA 57.857 33.333 0.00 0.00 0.00 3.36
2621 2649 9.991388 TTTTAGTCCGAAATTGGTATTTTATCG 57.009 29.630 0.00 0.00 34.16 2.92
2624 2652 8.361592 AGTCCGAAATTGGTATTTTATCGTAG 57.638 34.615 0.00 0.00 34.16 3.51
2687 2715 8.759641 CATTAGATAGAACTTTCAGATTCGTGG 58.240 37.037 0.00 0.00 0.00 4.94
2718 2746 0.517316 GCCGATGCGTTCTTGTTTCT 59.483 50.000 0.00 0.00 0.00 2.52
2720 2748 1.128692 CCGATGCGTTCTTGTTTCTCC 59.871 52.381 0.00 0.00 0.00 3.71
2725 2753 0.875059 CGTTCTTGTTTCTCCTGGCC 59.125 55.000 0.00 0.00 0.00 5.36
2727 2755 1.882623 GTTCTTGTTTCTCCTGGCCTG 59.117 52.381 3.32 2.54 0.00 4.85
2728 2756 0.401738 TCTTGTTTCTCCTGGCCTGG 59.598 55.000 22.36 22.36 0.00 4.45
2729 2757 0.610232 CTTGTTTCTCCTGGCCTGGG 60.610 60.000 26.94 17.69 0.00 4.45
2730 2758 2.361737 GTTTCTCCTGGCCTGGGC 60.362 66.667 26.94 14.23 41.06 5.36
2731 2759 2.532715 TTTCTCCTGGCCTGGGCT 60.533 61.111 26.94 0.00 41.60 5.19
2732 2760 2.162906 TTTCTCCTGGCCTGGGCTT 61.163 57.895 26.94 0.00 41.60 4.35
2733 2761 2.430704 TTTCTCCTGGCCTGGGCTTG 62.431 60.000 26.94 15.05 41.60 4.01
2734 2762 3.655211 CTCCTGGCCTGGGCTTGT 61.655 66.667 26.94 0.00 41.60 3.16
2735 2763 3.635268 CTCCTGGCCTGGGCTTGTC 62.635 68.421 26.94 0.00 41.60 3.18
2736 2764 3.970410 CCTGGCCTGGGCTTGTCA 61.970 66.667 20.77 0.00 41.60 3.58
2737 2765 2.115910 CTGGCCTGGGCTTGTCAA 59.884 61.111 21.72 0.00 41.60 3.18
2738 2766 2.203480 TGGCCTGGGCTTGTCAAC 60.203 61.111 21.72 0.00 41.60 3.18
2739 2767 2.991540 GGCCTGGGCTTGTCAACC 60.992 66.667 13.80 0.00 41.60 3.77
2744 2772 2.116125 GGGCTTGTCAACCCAGCT 59.884 61.111 14.79 0.00 46.22 4.24
2745 2773 2.270986 GGGCTTGTCAACCCAGCTG 61.271 63.158 6.78 6.78 46.22 4.24
2746 2774 2.270986 GGCTTGTCAACCCAGCTGG 61.271 63.158 26.87 26.87 41.37 4.85
2747 2775 2.924105 GCTTGTCAACCCAGCTGGC 61.924 63.158 28.39 13.80 37.83 4.85
2748 2776 1.228367 CTTGTCAACCCAGCTGGCT 60.228 57.895 28.39 11.78 37.83 4.75
2749 2777 1.228245 TTGTCAACCCAGCTGGCTC 60.228 57.895 28.39 14.31 37.83 4.70
2750 2778 1.993701 TTGTCAACCCAGCTGGCTCA 61.994 55.000 28.39 16.60 37.83 4.26
2751 2779 1.001641 GTCAACCCAGCTGGCTCAT 60.002 57.895 28.39 9.24 37.83 2.90
2752 2780 1.001764 TCAACCCAGCTGGCTCATG 60.002 57.895 28.39 20.50 37.83 3.07
2753 2781 1.303888 CAACCCAGCTGGCTCATGT 60.304 57.895 28.39 16.41 37.83 3.21
2765 2793 7.315142 CAGCTGGCTCATGTTTTTATCTTTTA 58.685 34.615 5.57 0.00 0.00 1.52
2782 2810 6.993786 TCTTTTATTGTGTTGTCAGTCACA 57.006 33.333 8.27 8.27 41.81 3.58
2789 2817 2.016318 TGTTGTCAGTCACAGGCTTTG 58.984 47.619 0.00 0.00 35.97 2.77
2803 2831 6.715347 ACAGGCTTTGTGTCTTTTTCTTAT 57.285 33.333 0.00 0.00 38.99 1.73
2807 2835 9.132521 CAGGCTTTGTGTCTTTTTCTTATATTG 57.867 33.333 0.00 0.00 0.00 1.90
2817 2845 7.013834 TCTTTTTCTTATATTGGGTTGTGGGT 58.986 34.615 0.00 0.00 0.00 4.51
2826 2854 7.747809 ATATTGGGTTGTGGGTTATTTTCAT 57.252 32.000 0.00 0.00 0.00 2.57
2830 2858 4.380128 GGGTTGTGGGTTATTTTCATCGTC 60.380 45.833 0.00 0.00 0.00 4.20
2834 2862 5.556915 TGTGGGTTATTTTCATCGTCTCTT 58.443 37.500 0.00 0.00 0.00 2.85
2835 2863 6.001460 TGTGGGTTATTTTCATCGTCTCTTT 58.999 36.000 0.00 0.00 0.00 2.52
2836 2864 6.148811 TGTGGGTTATTTTCATCGTCTCTTTC 59.851 38.462 0.00 0.00 0.00 2.62
2849 2877 3.426292 CGTCTCTTTCTGACTGCACGATA 60.426 47.826 0.00 0.00 32.70 2.92
2850 2878 4.486090 GTCTCTTTCTGACTGCACGATAA 58.514 43.478 0.00 0.00 0.00 1.75
2851 2879 4.923871 GTCTCTTTCTGACTGCACGATAAA 59.076 41.667 0.00 0.00 0.00 1.40
2852 2880 4.923871 TCTCTTTCTGACTGCACGATAAAC 59.076 41.667 0.00 0.00 0.00 2.01
2877 2906 4.406326 TCTGTACGGGCCATTGATAACTTA 59.594 41.667 4.39 0.00 0.00 2.24
2881 2910 8.136563 TGTACGGGCCATTGATAACTTATATA 57.863 34.615 4.39 0.00 0.00 0.86
2901 2930 9.952030 TTATATATTTTCTTGGACTGTGTGTGA 57.048 29.630 0.00 0.00 0.00 3.58
2902 2931 8.862325 ATATATTTTCTTGGACTGTGTGTGAA 57.138 30.769 0.00 0.00 0.00 3.18
2903 2932 4.963276 TTTTCTTGGACTGTGTGTGAAG 57.037 40.909 0.00 0.00 0.00 3.02
2904 2933 3.904800 TTCTTGGACTGTGTGTGAAGA 57.095 42.857 0.00 0.00 0.00 2.87
2905 2934 3.904800 TCTTGGACTGTGTGTGAAGAA 57.095 42.857 0.00 0.00 0.00 2.52
2917 3292 3.077359 GTGTGAAGAAGTGAAGATGGGG 58.923 50.000 0.00 0.00 0.00 4.96
2918 3293 2.711009 TGTGAAGAAGTGAAGATGGGGT 59.289 45.455 0.00 0.00 0.00 4.95
2919 3294 3.244561 TGTGAAGAAGTGAAGATGGGGTC 60.245 47.826 0.00 0.00 0.00 4.46
2921 3296 2.350863 AGAAGTGAAGATGGGGTCCT 57.649 50.000 0.00 0.00 0.00 3.85
2923 3298 2.307098 AGAAGTGAAGATGGGGTCCTTG 59.693 50.000 0.00 0.00 0.00 3.61
2924 3299 2.044793 AGTGAAGATGGGGTCCTTGA 57.955 50.000 0.00 0.00 0.00 3.02
2925 3300 1.912043 AGTGAAGATGGGGTCCTTGAG 59.088 52.381 0.00 0.00 0.00 3.02
2926 3301 1.065126 GTGAAGATGGGGTCCTTGAGG 60.065 57.143 0.00 0.00 0.00 3.86
2927 3302 0.106967 GAAGATGGGGTCCTTGAGGC 60.107 60.000 0.00 0.00 34.44 4.70
2928 3303 1.575447 AAGATGGGGTCCTTGAGGCC 61.575 60.000 0.00 0.00 34.44 5.19
2929 3304 3.023735 ATGGGGTCCTTGAGGCCC 61.024 66.667 16.65 16.65 45.21 5.80
2933 3308 3.412408 GGTCCTTGAGGCCCCTCC 61.412 72.222 11.62 0.00 42.09 4.30
2934 3309 3.412408 GTCCTTGAGGCCCCTCCC 61.412 72.222 11.62 0.00 42.09 4.30
2935 3310 3.953652 TCCTTGAGGCCCCTCCCA 61.954 66.667 11.62 0.00 42.09 4.37
2936 3311 2.941025 CCTTGAGGCCCCTCCCAA 60.941 66.667 11.62 0.66 42.09 4.12
2937 3312 2.319762 CCTTGAGGCCCCTCCCAAT 61.320 63.158 11.62 0.00 42.09 3.16
2938 3313 1.076485 CTTGAGGCCCCTCCCAATG 60.076 63.158 11.62 0.00 42.09 2.82
2939 3314 3.301222 TTGAGGCCCCTCCCAATGC 62.301 63.158 11.62 0.00 42.09 3.56
2940 3315 3.424105 GAGGCCCCTCCCAATGCT 61.424 66.667 0.00 0.00 37.11 3.79
2941 3316 2.948924 AGGCCCCTCCCAATGCTT 60.949 61.111 0.00 0.00 34.51 3.91
2942 3317 2.442830 GGCCCCTCCCAATGCTTC 60.443 66.667 0.00 0.00 0.00 3.86
2943 3318 2.360191 GCCCCTCCCAATGCTTCA 59.640 61.111 0.00 0.00 0.00 3.02
2944 3319 1.305213 GCCCCTCCCAATGCTTCAA 60.305 57.895 0.00 0.00 0.00 2.69
2945 3320 1.607801 GCCCCTCCCAATGCTTCAAC 61.608 60.000 0.00 0.00 0.00 3.18
2946 3321 0.040204 CCCCTCCCAATGCTTCAACT 59.960 55.000 0.00 0.00 0.00 3.16
2947 3322 1.550869 CCCCTCCCAATGCTTCAACTT 60.551 52.381 0.00 0.00 0.00 2.66
2948 3323 1.547372 CCCTCCCAATGCTTCAACTTG 59.453 52.381 0.00 0.00 0.00 3.16
2949 3324 2.242043 CCTCCCAATGCTTCAACTTGT 58.758 47.619 0.00 0.00 0.00 3.16
2950 3325 3.420893 CCTCCCAATGCTTCAACTTGTA 58.579 45.455 0.00 0.00 0.00 2.41
2951 3326 4.019174 CCTCCCAATGCTTCAACTTGTAT 58.981 43.478 0.00 0.00 0.00 2.29
2952 3327 5.192927 CCTCCCAATGCTTCAACTTGTATA 58.807 41.667 0.00 0.00 0.00 1.47
2953 3328 5.297776 CCTCCCAATGCTTCAACTTGTATAG 59.702 44.000 0.00 0.00 0.00 1.31
2954 3329 5.192927 TCCCAATGCTTCAACTTGTATAGG 58.807 41.667 0.00 0.00 0.00 2.57
2955 3330 4.949856 CCCAATGCTTCAACTTGTATAGGT 59.050 41.667 0.00 0.00 0.00 3.08
2956 3331 5.163622 CCCAATGCTTCAACTTGTATAGGTG 60.164 44.000 0.00 0.00 43.33 4.00
2957 3332 5.335127 CAATGCTTCAACTTGTATAGGTGC 58.665 41.667 0.00 0.00 41.61 5.01
2958 3333 4.286297 TGCTTCAACTTGTATAGGTGCT 57.714 40.909 0.00 0.00 41.61 4.40
2959 3334 5.414789 TGCTTCAACTTGTATAGGTGCTA 57.585 39.130 0.00 0.00 41.61 3.49
2960 3335 5.800296 TGCTTCAACTTGTATAGGTGCTAA 58.200 37.500 0.00 0.00 41.61 3.09
2961 3336 5.874810 TGCTTCAACTTGTATAGGTGCTAAG 59.125 40.000 0.00 0.00 41.61 2.18
2962 3337 5.294552 GCTTCAACTTGTATAGGTGCTAAGG 59.705 44.000 0.00 0.00 41.61 2.69
2963 3338 4.766375 TCAACTTGTATAGGTGCTAAGGC 58.234 43.478 0.00 0.00 41.61 4.35
2964 3339 4.469945 TCAACTTGTATAGGTGCTAAGGCT 59.530 41.667 0.00 0.00 41.61 4.58
2965 3340 4.408182 ACTTGTATAGGTGCTAAGGCTG 57.592 45.455 0.00 0.00 39.59 4.85
2966 3341 2.910688 TGTATAGGTGCTAAGGCTGC 57.089 50.000 0.00 0.00 39.59 5.25
2967 3342 1.416401 TGTATAGGTGCTAAGGCTGCC 59.584 52.381 11.65 11.65 39.59 4.85
2968 3343 1.416401 GTATAGGTGCTAAGGCTGCCA 59.584 52.381 22.65 0.00 39.59 4.92
2969 3344 1.143813 ATAGGTGCTAAGGCTGCCAT 58.856 50.000 22.65 12.21 39.59 4.40
2970 3345 0.181114 TAGGTGCTAAGGCTGCCATG 59.819 55.000 22.65 11.11 39.59 3.66
2971 3346 1.379044 GGTGCTAAGGCTGCCATGT 60.379 57.895 22.65 8.12 39.59 3.21
2972 3347 0.107214 GGTGCTAAGGCTGCCATGTA 60.107 55.000 22.65 8.89 39.59 2.29
2973 3348 1.477558 GGTGCTAAGGCTGCCATGTAT 60.478 52.381 22.65 3.89 39.59 2.29
2974 3349 1.605710 GTGCTAAGGCTGCCATGTATG 59.394 52.381 22.65 5.67 39.59 2.39
2975 3350 0.595095 GCTAAGGCTGCCATGTATGC 59.405 55.000 22.65 11.79 35.22 3.14
2976 3351 1.971481 CTAAGGCTGCCATGTATGCA 58.029 50.000 22.65 0.00 37.17 3.96
2977 3352 2.300433 CTAAGGCTGCCATGTATGCAA 58.700 47.619 22.65 0.00 38.46 4.08
2978 3353 1.559368 AAGGCTGCCATGTATGCAAA 58.441 45.000 22.65 0.00 38.46 3.68
2979 3354 1.559368 AGGCTGCCATGTATGCAAAA 58.441 45.000 22.65 0.00 38.46 2.44
2980 3355 1.901159 AGGCTGCCATGTATGCAAAAA 59.099 42.857 22.65 0.00 38.46 1.94
2996 3371 2.660189 AAAAAGATGATGCGGCAAGG 57.340 45.000 6.82 0.00 0.00 3.61
2997 3372 1.549203 AAAAGATGATGCGGCAAGGT 58.451 45.000 6.82 0.00 0.00 3.50
2998 3373 2.418368 AAAGATGATGCGGCAAGGTA 57.582 45.000 6.82 0.00 0.00 3.08
2999 3374 2.418368 AAGATGATGCGGCAAGGTAA 57.582 45.000 6.82 0.00 0.00 2.85
3000 3375 2.645838 AGATGATGCGGCAAGGTAAT 57.354 45.000 6.82 0.00 0.00 1.89
3001 3376 2.936202 AGATGATGCGGCAAGGTAATT 58.064 42.857 6.82 0.00 0.00 1.40
3002 3377 4.085357 AGATGATGCGGCAAGGTAATTA 57.915 40.909 6.82 0.00 0.00 1.40
3003 3378 4.460263 AGATGATGCGGCAAGGTAATTAA 58.540 39.130 6.82 0.00 0.00 1.40
3004 3379 4.516698 AGATGATGCGGCAAGGTAATTAAG 59.483 41.667 6.82 0.00 0.00 1.85
3005 3380 3.879998 TGATGCGGCAAGGTAATTAAGA 58.120 40.909 6.82 0.00 0.00 2.10
3006 3381 3.876914 TGATGCGGCAAGGTAATTAAGAG 59.123 43.478 6.82 0.00 0.00 2.85
3007 3382 2.639065 TGCGGCAAGGTAATTAAGAGG 58.361 47.619 0.00 0.00 0.00 3.69
3008 3383 2.237643 TGCGGCAAGGTAATTAAGAGGA 59.762 45.455 0.00 0.00 0.00 3.71
3009 3384 3.275999 GCGGCAAGGTAATTAAGAGGAA 58.724 45.455 0.00 0.00 0.00 3.36
3010 3385 3.312697 GCGGCAAGGTAATTAAGAGGAAG 59.687 47.826 0.00 0.00 0.00 3.46
3011 3386 3.877508 CGGCAAGGTAATTAAGAGGAAGG 59.122 47.826 0.00 0.00 0.00 3.46
3012 3387 4.207955 GGCAAGGTAATTAAGAGGAAGGG 58.792 47.826 0.00 0.00 0.00 3.95
3013 3388 4.079958 GGCAAGGTAATTAAGAGGAAGGGA 60.080 45.833 0.00 0.00 0.00 4.20
3014 3389 5.399152 GGCAAGGTAATTAAGAGGAAGGGAT 60.399 44.000 0.00 0.00 0.00 3.85
3015 3390 5.532779 GCAAGGTAATTAAGAGGAAGGGATG 59.467 44.000 0.00 0.00 0.00 3.51
3016 3391 5.913946 AGGTAATTAAGAGGAAGGGATGG 57.086 43.478 0.00 0.00 0.00 3.51
3017 3392 4.665483 AGGTAATTAAGAGGAAGGGATGGG 59.335 45.833 0.00 0.00 0.00 4.00
3018 3393 4.415846 GGTAATTAAGAGGAAGGGATGGGT 59.584 45.833 0.00 0.00 0.00 4.51
3019 3394 4.526438 AATTAAGAGGAAGGGATGGGTG 57.474 45.455 0.00 0.00 0.00 4.61
3020 3395 2.661176 TAAGAGGAAGGGATGGGTGT 57.339 50.000 0.00 0.00 0.00 4.16
3021 3396 0.995024 AAGAGGAAGGGATGGGTGTG 59.005 55.000 0.00 0.00 0.00 3.82
3022 3397 0.119155 AGAGGAAGGGATGGGTGTGA 59.881 55.000 0.00 0.00 0.00 3.58
3023 3398 1.216990 GAGGAAGGGATGGGTGTGAT 58.783 55.000 0.00 0.00 0.00 3.06
3024 3399 0.921896 AGGAAGGGATGGGTGTGATG 59.078 55.000 0.00 0.00 0.00 3.07
3025 3400 0.918983 GGAAGGGATGGGTGTGATGA 59.081 55.000 0.00 0.00 0.00 2.92
3026 3401 1.408822 GGAAGGGATGGGTGTGATGAC 60.409 57.143 0.00 0.00 0.00 3.06
3027 3402 0.625849 AAGGGATGGGTGTGATGACC 59.374 55.000 0.00 0.00 34.96 4.02
3052 3427 3.287482 AAAAACAATGCCAGGTGCG 57.713 47.368 0.00 0.00 45.60 5.34
3053 3428 0.249826 AAAAACAATGCCAGGTGCGG 60.250 50.000 0.00 0.00 45.60 5.69
3054 3429 2.098426 AAAACAATGCCAGGTGCGGG 62.098 55.000 0.00 0.00 45.60 6.13
3055 3430 2.992817 AAACAATGCCAGGTGCGGGA 62.993 55.000 0.00 0.00 45.60 5.14
3056 3431 2.676121 CAATGCCAGGTGCGGGAA 60.676 61.111 0.00 0.00 45.60 3.97
3057 3432 2.676471 AATGCCAGGTGCGGGAAC 60.676 61.111 0.00 0.00 45.60 3.62
3058 3433 3.505790 AATGCCAGGTGCGGGAACA 62.506 57.895 0.00 0.00 45.60 3.18
3059 3434 2.786512 AATGCCAGGTGCGGGAACAT 62.787 55.000 0.00 0.00 45.60 2.71
3060 3435 1.920734 ATGCCAGGTGCGGGAACATA 61.921 55.000 0.00 0.00 45.60 2.29
3061 3436 1.377987 GCCAGGTGCGGGAACATAA 60.378 57.895 0.00 0.00 0.00 1.90
3062 3437 1.376609 GCCAGGTGCGGGAACATAAG 61.377 60.000 0.00 0.00 0.00 1.73
3063 3438 0.748005 CCAGGTGCGGGAACATAAGG 60.748 60.000 0.00 0.00 0.00 2.69
3064 3439 0.251916 CAGGTGCGGGAACATAAGGA 59.748 55.000 0.00 0.00 0.00 3.36
3065 3440 0.988832 AGGTGCGGGAACATAAGGAA 59.011 50.000 0.00 0.00 0.00 3.36
3066 3441 1.353022 AGGTGCGGGAACATAAGGAAA 59.647 47.619 0.00 0.00 0.00 3.13
3067 3442 2.164338 GGTGCGGGAACATAAGGAAAA 58.836 47.619 0.00 0.00 0.00 2.29
3068 3443 2.094906 GGTGCGGGAACATAAGGAAAAC 60.095 50.000 0.00 0.00 0.00 2.43
3069 3444 2.554893 GTGCGGGAACATAAGGAAAACA 59.445 45.455 0.00 0.00 0.00 2.83
3070 3445 2.554893 TGCGGGAACATAAGGAAAACAC 59.445 45.455 0.00 0.00 0.00 3.32
3071 3446 2.817844 GCGGGAACATAAGGAAAACACT 59.182 45.455 0.00 0.00 0.00 3.55
3072 3447 3.254903 GCGGGAACATAAGGAAAACACTT 59.745 43.478 0.00 0.00 0.00 3.16
3073 3448 4.456566 GCGGGAACATAAGGAAAACACTTA 59.543 41.667 0.00 0.00 35.14 2.24
3074 3449 5.048573 GCGGGAACATAAGGAAAACACTTAA 60.049 40.000 0.00 0.00 34.42 1.85
3075 3450 6.515365 GCGGGAACATAAGGAAAACACTTAAA 60.515 38.462 0.00 0.00 34.42 1.52
3076 3451 7.599171 CGGGAACATAAGGAAAACACTTAAAT 58.401 34.615 0.00 0.00 34.42 1.40
3077 3452 7.540745 CGGGAACATAAGGAAAACACTTAAATG 59.459 37.037 0.00 0.00 34.42 2.32
3078 3453 8.581578 GGGAACATAAGGAAAACACTTAAATGA 58.418 33.333 0.00 0.00 34.42 2.57
3079 3454 9.974980 GGAACATAAGGAAAACACTTAAATGAA 57.025 29.630 0.00 0.00 34.42 2.57
3087 3462 9.803315 AGGAAAACACTTAAATGAAAGAAACTC 57.197 29.630 0.00 0.00 0.00 3.01
3088 3463 9.581099 GGAAAACACTTAAATGAAAGAAACTCA 57.419 29.630 0.00 0.00 0.00 3.41
3090 3465 8.926715 AAACACTTAAATGAAAGAAACTCACC 57.073 30.769 0.00 0.00 0.00 4.02
3091 3466 7.639113 ACACTTAAATGAAAGAAACTCACCA 57.361 32.000 0.00 0.00 0.00 4.17
3092 3467 8.062065 ACACTTAAATGAAAGAAACTCACCAA 57.938 30.769 0.00 0.00 0.00 3.67
3093 3468 8.695456 ACACTTAAATGAAAGAAACTCACCAAT 58.305 29.630 0.00 0.00 0.00 3.16
3094 3469 8.971321 CACTTAAATGAAAGAAACTCACCAATG 58.029 33.333 0.00 0.00 0.00 2.82
3095 3470 8.912988 ACTTAAATGAAAGAAACTCACCAATGA 58.087 29.630 0.00 0.00 0.00 2.57
3096 3471 9.748708 CTTAAATGAAAGAAACTCACCAATGAA 57.251 29.630 0.00 0.00 33.30 2.57
3098 3473 8.597662 AAATGAAAGAAACTCACCAATGAATG 57.402 30.769 0.00 0.00 33.30 2.67
3134 3509 9.309516 ACTTGCTAAATCATTAAATGAAGCATG 57.690 29.630 5.33 5.33 45.04 4.06
3135 3510 7.703298 TGCTAAATCATTAAATGAAGCATGC 57.297 32.000 10.51 10.51 42.50 4.06
3136 3511 7.494211 TGCTAAATCATTAAATGAAGCATGCT 58.506 30.769 16.30 16.30 42.50 3.79
3137 3512 7.982919 TGCTAAATCATTAAATGAAGCATGCTT 59.017 29.630 32.41 32.41 42.50 3.91
3138 3513 9.467258 GCTAAATCATTAAATGAAGCATGCTTA 57.533 29.630 32.02 19.90 43.50 3.09
3140 3515 7.941795 AATCATTAAATGAAGCATGCTTAGC 57.058 32.000 32.02 20.89 43.50 3.09
3141 3516 6.704289 TCATTAAATGAAGCATGCTTAGCT 57.296 33.333 32.02 18.51 45.97 3.32
3142 3517 7.806409 TCATTAAATGAAGCATGCTTAGCTA 57.194 32.000 32.02 18.60 42.53 3.32
3143 3518 7.642669 TCATTAAATGAAGCATGCTTAGCTAC 58.357 34.615 32.02 19.46 42.53 3.58
3144 3519 7.282901 TCATTAAATGAAGCATGCTTAGCTACA 59.717 33.333 32.02 24.17 42.53 2.74
3145 3520 5.902613 AAATGAAGCATGCTTAGCTACAA 57.097 34.783 32.02 12.42 42.53 2.41
3146 3521 4.889832 ATGAAGCATGCTTAGCTACAAC 57.110 40.909 32.02 17.34 42.53 3.32
3147 3522 3.673902 TGAAGCATGCTTAGCTACAACA 58.326 40.909 32.02 19.66 42.53 3.33
3148 3523 4.071423 TGAAGCATGCTTAGCTACAACAA 58.929 39.130 32.02 6.30 42.53 2.83
3149 3524 4.154737 TGAAGCATGCTTAGCTACAACAAG 59.845 41.667 32.02 0.00 42.53 3.16
3150 3525 3.679389 AGCATGCTTAGCTACAACAAGT 58.321 40.909 16.30 0.00 41.32 3.16
3151 3526 4.074970 AGCATGCTTAGCTACAACAAGTT 58.925 39.130 16.30 0.00 41.32 2.66
3152 3527 5.245531 AGCATGCTTAGCTACAACAAGTTA 58.754 37.500 16.30 0.00 41.32 2.24
3153 3528 5.705441 AGCATGCTTAGCTACAACAAGTTAA 59.295 36.000 16.30 0.00 41.32 2.01
3154 3529 6.024049 GCATGCTTAGCTACAACAAGTTAAG 58.976 40.000 11.37 3.87 40.97 1.85
3158 3533 5.928153 CTTAGCTACAACAAGTTAAGCACC 58.072 41.667 16.79 0.00 34.75 5.01
3159 3534 3.815809 AGCTACAACAAGTTAAGCACCA 58.184 40.909 16.79 0.00 34.85 4.17
3160 3535 4.398319 AGCTACAACAAGTTAAGCACCAT 58.602 39.130 16.79 0.28 34.85 3.55
3161 3536 4.827284 AGCTACAACAAGTTAAGCACCATT 59.173 37.500 16.79 0.00 34.85 3.16
3162 3537 5.301805 AGCTACAACAAGTTAAGCACCATTT 59.698 36.000 16.79 0.00 34.85 2.32
3163 3538 5.402270 GCTACAACAAGTTAAGCACCATTTG 59.598 40.000 12.11 0.00 33.49 2.32
3182 3557 1.713597 GCATTGGGCACTTTAGTTGC 58.286 50.000 0.00 0.00 43.97 4.17
3183 3558 1.273327 GCATTGGGCACTTTAGTTGCT 59.727 47.619 0.00 0.00 43.97 3.91
3184 3559 2.289010 GCATTGGGCACTTTAGTTGCTT 60.289 45.455 0.00 0.00 43.97 3.91
3185 3560 3.056891 GCATTGGGCACTTTAGTTGCTTA 60.057 43.478 0.00 0.00 43.97 3.09
3186 3561 4.737054 CATTGGGCACTTTAGTTGCTTAG 58.263 43.478 0.00 0.00 0.00 2.18
3187 3562 3.502123 TGGGCACTTTAGTTGCTTAGT 57.498 42.857 0.00 0.00 0.00 2.24
3188 3563 3.827722 TGGGCACTTTAGTTGCTTAGTT 58.172 40.909 0.00 0.00 0.00 2.24
3189 3564 4.975631 TGGGCACTTTAGTTGCTTAGTTA 58.024 39.130 0.00 0.00 0.00 2.24
3190 3565 5.566469 TGGGCACTTTAGTTGCTTAGTTAT 58.434 37.500 0.00 0.00 0.00 1.89
3191 3566 6.007703 TGGGCACTTTAGTTGCTTAGTTATT 58.992 36.000 0.00 0.00 0.00 1.40
3192 3567 6.492087 TGGGCACTTTAGTTGCTTAGTTATTT 59.508 34.615 0.00 0.00 0.00 1.40
3193 3568 7.666388 TGGGCACTTTAGTTGCTTAGTTATTTA 59.334 33.333 0.00 0.00 0.00 1.40
3194 3569 7.966753 GGGCACTTTAGTTGCTTAGTTATTTAC 59.033 37.037 0.00 0.00 0.00 2.01
3195 3570 8.727910 GGCACTTTAGTTGCTTAGTTATTTACT 58.272 33.333 0.00 0.00 41.04 2.24
3196 3571 9.543018 GCACTTTAGTTGCTTAGTTATTTACTG 57.457 33.333 0.00 0.00 37.73 2.74
3204 3579 9.326339 GTTGCTTAGTTATTTACTGTGTTTAGC 57.674 33.333 0.00 0.00 37.73 3.09
3205 3580 8.610248 TGCTTAGTTATTTACTGTGTTTAGCA 57.390 30.769 0.00 0.00 37.73 3.49
3217 3592 4.866682 GTGTTTAGCACCTCATCTTAGC 57.133 45.455 0.00 0.00 42.10 3.09
3218 3593 4.253685 GTGTTTAGCACCTCATCTTAGCA 58.746 43.478 0.00 0.00 42.10 3.49
3219 3594 4.093556 GTGTTTAGCACCTCATCTTAGCAC 59.906 45.833 0.00 0.00 42.10 4.40
3220 3595 4.020218 TGTTTAGCACCTCATCTTAGCACT 60.020 41.667 0.00 0.00 0.00 4.40
3221 3596 5.186992 TGTTTAGCACCTCATCTTAGCACTA 59.813 40.000 0.00 0.00 0.00 2.74
3222 3597 5.521906 TTAGCACCTCATCTTAGCACTAG 57.478 43.478 0.00 0.00 0.00 2.57
3223 3598 3.370104 AGCACCTCATCTTAGCACTAGT 58.630 45.455 0.00 0.00 0.00 2.57
3224 3599 3.131933 AGCACCTCATCTTAGCACTAGTG 59.868 47.826 18.93 18.93 0.00 2.74
3236 3611 2.322355 CACTAGTGCATTGGAGGAGG 57.678 55.000 10.54 0.00 0.00 4.30
3237 3612 1.556911 CACTAGTGCATTGGAGGAGGT 59.443 52.381 10.54 0.00 0.00 3.85
3238 3613 1.834263 ACTAGTGCATTGGAGGAGGTC 59.166 52.381 0.00 0.00 0.00 3.85
3239 3614 2.114616 CTAGTGCATTGGAGGAGGTCT 58.885 52.381 0.00 0.00 0.00 3.85
3240 3615 0.908198 AGTGCATTGGAGGAGGTCTC 59.092 55.000 0.00 0.00 41.71 3.36
3253 3628 5.445964 GAGGAGGTCTCAGAATAGAAGAGT 58.554 45.833 0.14 0.00 42.02 3.24
3260 3635 5.067283 GTCTCAGAATAGAAGAGTGAGGGTC 59.933 48.000 0.00 0.00 36.18 4.46
3278 3653 3.936453 GGGTCGCAATACACATTTACTCA 59.064 43.478 0.00 0.00 0.00 3.41
3291 3666 6.146184 ACACATTTACTCACGTGAGATTTCTG 59.854 38.462 43.55 32.13 44.74 3.02
3324 3699 8.663167 CCATCATATCTATCCATGGCCTATTTA 58.337 37.037 6.96 0.00 0.00 1.40
3336 3711 5.317733 TGGCCTATTTATTTTGTTCGTGG 57.682 39.130 3.32 0.00 0.00 4.94
3342 3717 7.432252 GCCTATTTATTTTGTTCGTGGATTCAG 59.568 37.037 0.00 0.00 0.00 3.02
3350 3725 2.060326 TCGTGGATTCAGTCGTTGAC 57.940 50.000 0.00 0.00 34.94 3.18
3434 3809 9.679661 TTACTTATGAGCCATGTTTTCATCTTA 57.320 29.630 7.00 0.00 38.64 2.10
3448 3823 7.814107 TGTTTTCATCTTATGAGCCATGTTTTC 59.186 33.333 0.00 0.00 40.94 2.29
3451 3826 7.268199 TCATCTTATGAGCCATGTTTTCATC 57.732 36.000 7.00 0.00 34.61 2.92
3452 3827 7.058525 TCATCTTATGAGCCATGTTTTCATCT 58.941 34.615 7.00 0.00 34.61 2.90
3453 3828 7.558807 TCATCTTATGAGCCATGTTTTCATCTT 59.441 33.333 7.00 0.00 34.61 2.40
3454 3829 8.843262 CATCTTATGAGCCATGTTTTCATCTTA 58.157 33.333 7.00 0.00 38.64 2.10
3455 3830 8.985315 TCTTATGAGCCATGTTTTCATCTTAT 57.015 30.769 7.00 0.00 38.64 1.73
3456 3831 8.843262 TCTTATGAGCCATGTTTTCATCTTATG 58.157 33.333 7.00 0.00 38.64 1.90
3457 3832 8.750515 TTATGAGCCATGTTTTCATCTTATGA 57.249 30.769 7.00 0.00 38.64 2.15
3458 3833 6.688637 TGAGCCATGTTTTCATCTTATGAG 57.311 37.500 0.00 0.00 40.94 2.90
3459 3834 5.066893 TGAGCCATGTTTTCATCTTATGAGC 59.933 40.000 0.00 0.00 40.94 4.26
3460 3835 4.340381 AGCCATGTTTTCATCTTATGAGCC 59.660 41.667 0.00 0.00 40.94 4.70
3461 3836 4.098349 GCCATGTTTTCATCTTATGAGCCA 59.902 41.667 0.00 0.00 40.94 4.75
3462 3837 5.221382 GCCATGTTTTCATCTTATGAGCCAT 60.221 40.000 0.00 0.00 40.94 4.40
3463 3838 6.016024 GCCATGTTTTCATCTTATGAGCCATA 60.016 38.462 0.00 0.00 40.94 2.74
3464 3839 7.309621 GCCATGTTTTCATCTTATGAGCCATAT 60.310 37.037 0.00 0.00 40.94 1.78
3465 3840 8.582437 CCATGTTTTCATCTTATGAGCCATATT 58.418 33.333 0.00 0.00 40.94 1.28
3466 3841 9.976511 CATGTTTTCATCTTATGAGCCATATTT 57.023 29.630 0.00 0.00 40.94 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.041684 TGTGAGAGAGGAGATGGGCA 59.958 55.000 0.00 0.00 0.00 5.36
44 45 2.685897 GCTTACGTGTGAGAGAGGAGAT 59.314 50.000 0.00 0.00 0.00 2.75
643 646 1.270412 TGTGGGCGAAGTTGATAACGT 60.270 47.619 0.00 0.00 36.23 3.99
862 865 2.815945 ATGGGATCCGAGCCAGCTG 61.816 63.158 6.78 6.78 0.00 4.24
884 887 0.179215 CCAATCTCGCTCGCACAAAC 60.179 55.000 0.00 0.00 0.00 2.93
911 930 7.437713 TGAATATCTCCCGAATATGGCTATT 57.562 36.000 0.00 0.00 0.00 1.73
914 933 5.397221 CCATGAATATCTCCCGAATATGGCT 60.397 44.000 0.00 0.00 0.00 4.75
1017 1036 4.752879 TTACTGGCGGCGCTCACC 62.753 66.667 32.30 15.58 0.00 4.02
1392 1411 2.046023 CAGAAGGGCACATCGGCA 60.046 61.111 0.00 0.00 43.60 5.69
1617 1636 0.389426 TAGAAAGAACGGCGTCCTGC 60.389 55.000 15.17 1.42 45.38 4.85
1819 1838 2.106566 CAGCCACTCTAGACAGTCCAT 58.893 52.381 0.00 0.00 0.00 3.41
2474 2493 2.119886 GCGTGAGGCTATGAGTCCT 58.880 57.895 0.00 0.00 39.11 3.85
2503 2528 9.480053 AAAAACAAATCACCATCATGAAACTAG 57.520 29.630 0.00 0.00 30.82 2.57
2596 2624 9.165035 ACGATAAAATACCAATTTCGGACTAAA 57.835 29.630 0.00 0.00 34.12 1.85
2620 2648 7.758076 TGTGAGTTAACTATTTCACATCCTACG 59.242 37.037 19.07 0.00 43.43 3.51
2621 2649 8.997621 TGTGAGTTAACTATTTCACATCCTAC 57.002 34.615 19.07 0.63 43.43 3.18
2652 2680 9.871238 TGAAAGTTCTATCTAATGGTTGTAGAC 57.129 33.333 0.00 0.00 30.52 2.59
2687 2715 1.195448 CGCATCGGCATGAGGAAATAC 59.805 52.381 0.00 0.00 41.24 1.89
2718 2746 3.650950 GACAAGCCCAGGCCAGGA 61.651 66.667 17.38 0.00 43.17 3.86
2720 2748 2.115910 TTGACAAGCCCAGGCCAG 59.884 61.111 5.01 0.00 43.17 4.85
2729 2757 2.924105 GCCAGCTGGGTTGACAAGC 61.924 63.158 33.46 12.33 39.65 4.01
2730 2758 1.228367 AGCCAGCTGGGTTGACAAG 60.228 57.895 31.61 3.91 44.81 3.16
2731 2759 2.926250 AGCCAGCTGGGTTGACAA 59.074 55.556 31.61 0.00 44.81 3.18
2738 2766 0.971386 AAAAACATGAGCCAGCTGGG 59.029 50.000 33.46 18.83 40.85 4.45
2739 2767 3.698040 AGATAAAAACATGAGCCAGCTGG 59.302 43.478 29.34 29.34 38.53 4.85
2740 2768 4.978083 AGATAAAAACATGAGCCAGCTG 57.022 40.909 6.78 6.78 0.00 4.24
2741 2769 5.990120 AAAGATAAAAACATGAGCCAGCT 57.010 34.783 0.00 0.00 0.00 4.24
2742 2770 8.598075 CAATAAAAGATAAAAACATGAGCCAGC 58.402 33.333 0.00 0.00 0.00 4.85
2743 2771 9.643693 ACAATAAAAGATAAAAACATGAGCCAG 57.356 29.630 0.00 0.00 0.00 4.85
2744 2772 9.421806 CACAATAAAAGATAAAAACATGAGCCA 57.578 29.630 0.00 0.00 0.00 4.75
2745 2773 9.423061 ACACAATAAAAGATAAAAACATGAGCC 57.577 29.630 0.00 0.00 0.00 4.70
2765 2793 1.949525 GCCTGTGACTGACAACACAAT 59.050 47.619 13.54 0.00 44.50 2.71
2782 2810 8.306761 CCAATATAAGAAAAAGACACAAAGCCT 58.693 33.333 0.00 0.00 0.00 4.58
2789 2817 7.812669 CCACAACCCAATATAAGAAAAAGACAC 59.187 37.037 0.00 0.00 0.00 3.67
2794 2822 7.619512 AACCCACAACCCAATATAAGAAAAA 57.380 32.000 0.00 0.00 0.00 1.94
2799 2827 8.754080 TGAAAATAACCCACAACCCAATATAAG 58.246 33.333 0.00 0.00 0.00 1.73
2803 2831 6.127591 CGATGAAAATAACCCACAACCCAATA 60.128 38.462 0.00 0.00 0.00 1.90
2807 2835 3.508402 ACGATGAAAATAACCCACAACCC 59.492 43.478 0.00 0.00 0.00 4.11
2817 2845 7.148573 GCAGTCAGAAAGAGACGATGAAAATAA 60.149 37.037 0.00 0.00 40.84 1.40
2826 2854 1.335051 CGTGCAGTCAGAAAGAGACGA 60.335 52.381 0.00 0.00 40.84 4.20
2830 2858 4.201532 CGTTTATCGTGCAGTCAGAAAGAG 60.202 45.833 0.00 0.00 34.52 2.85
2853 2881 2.870411 GTTATCAATGGCCCGTACAGAC 59.130 50.000 0.00 0.00 0.00 3.51
2854 2882 2.769663 AGTTATCAATGGCCCGTACAGA 59.230 45.455 0.00 0.00 0.00 3.41
2855 2883 3.194005 AGTTATCAATGGCCCGTACAG 57.806 47.619 0.00 0.00 0.00 2.74
2856 2884 3.637911 AAGTTATCAATGGCCCGTACA 57.362 42.857 0.00 0.00 0.00 2.90
2857 2885 9.609346 AATATATAAGTTATCAATGGCCCGTAC 57.391 33.333 0.00 0.00 0.00 3.67
2859 2887 9.528489 AAAATATATAAGTTATCAATGGCCCGT 57.472 29.630 0.00 0.00 0.00 5.28
2877 2906 8.862325 TTCACACACAGTCCAAGAAAATATAT 57.138 30.769 0.00 0.00 0.00 0.86
2881 2910 5.192927 TCTTCACACACAGTCCAAGAAAAT 58.807 37.500 0.00 0.00 0.00 1.82
2897 2926 2.711009 ACCCCATCTTCACTTCTTCACA 59.289 45.455 0.00 0.00 0.00 3.58
2898 2927 3.339141 GACCCCATCTTCACTTCTTCAC 58.661 50.000 0.00 0.00 0.00 3.18
2900 2929 2.573915 AGGACCCCATCTTCACTTCTTC 59.426 50.000 0.00 0.00 0.00 2.87
2901 2930 2.637165 AGGACCCCATCTTCACTTCTT 58.363 47.619 0.00 0.00 0.00 2.52
2902 2931 2.307098 CAAGGACCCCATCTTCACTTCT 59.693 50.000 0.00 0.00 0.00 2.85
2903 2932 2.305927 TCAAGGACCCCATCTTCACTTC 59.694 50.000 0.00 0.00 0.00 3.01
2904 2933 2.307098 CTCAAGGACCCCATCTTCACTT 59.693 50.000 0.00 0.00 0.00 3.16
2905 2934 1.912043 CTCAAGGACCCCATCTTCACT 59.088 52.381 0.00 0.00 0.00 3.41
2917 3292 3.412408 GGGAGGGGCCTCAAGGAC 61.412 72.222 4.79 0.00 44.40 3.85
2918 3293 2.805827 ATTGGGAGGGGCCTCAAGGA 62.806 60.000 4.79 0.00 44.40 3.36
2919 3294 2.319762 ATTGGGAGGGGCCTCAAGG 61.320 63.158 4.79 0.00 44.40 3.61
2921 3296 3.099171 CATTGGGAGGGGCCTCAA 58.901 61.111 4.79 4.08 44.40 3.02
2923 3298 2.918300 GAAGCATTGGGAGGGGCCTC 62.918 65.000 0.84 0.00 42.04 4.70
2924 3299 2.948924 AAGCATTGGGAGGGGCCT 60.949 61.111 0.84 0.00 36.66 5.19
2925 3300 2.442830 GAAGCATTGGGAGGGGCC 60.443 66.667 0.00 0.00 0.00 5.80
2926 3301 1.305213 TTGAAGCATTGGGAGGGGC 60.305 57.895 0.00 0.00 0.00 5.80
2927 3302 0.040204 AGTTGAAGCATTGGGAGGGG 59.960 55.000 0.00 0.00 0.00 4.79
2928 3303 1.547372 CAAGTTGAAGCATTGGGAGGG 59.453 52.381 0.00 0.00 0.00 4.30
2929 3304 2.242043 ACAAGTTGAAGCATTGGGAGG 58.758 47.619 10.54 0.00 0.00 4.30
2930 3305 5.297776 CCTATACAAGTTGAAGCATTGGGAG 59.702 44.000 10.54 0.00 0.00 4.30
2931 3306 5.192927 CCTATACAAGTTGAAGCATTGGGA 58.807 41.667 10.54 0.00 0.00 4.37
2932 3307 4.949856 ACCTATACAAGTTGAAGCATTGGG 59.050 41.667 10.54 3.43 0.00 4.12
2933 3308 5.677091 GCACCTATACAAGTTGAAGCATTGG 60.677 44.000 10.54 9.44 0.00 3.16
2934 3309 5.124457 AGCACCTATACAAGTTGAAGCATTG 59.876 40.000 10.54 1.28 0.00 2.82
2935 3310 5.256474 AGCACCTATACAAGTTGAAGCATT 58.744 37.500 10.54 0.00 0.00 3.56
2936 3311 4.848357 AGCACCTATACAAGTTGAAGCAT 58.152 39.130 10.54 0.06 0.00 3.79
2937 3312 4.286297 AGCACCTATACAAGTTGAAGCA 57.714 40.909 10.54 0.00 0.00 3.91
2938 3313 5.294552 CCTTAGCACCTATACAAGTTGAAGC 59.705 44.000 10.54 2.79 0.00 3.86
2939 3314 5.294552 GCCTTAGCACCTATACAAGTTGAAG 59.705 44.000 10.54 3.95 39.53 3.02
2940 3315 5.045869 AGCCTTAGCACCTATACAAGTTGAA 60.046 40.000 10.54 0.00 43.56 2.69
2941 3316 4.469945 AGCCTTAGCACCTATACAAGTTGA 59.530 41.667 10.54 0.00 43.56 3.18
2942 3317 4.572389 CAGCCTTAGCACCTATACAAGTTG 59.428 45.833 0.00 0.00 43.56 3.16
2943 3318 4.770795 CAGCCTTAGCACCTATACAAGTT 58.229 43.478 0.00 0.00 43.56 2.66
2944 3319 3.432326 GCAGCCTTAGCACCTATACAAGT 60.432 47.826 0.00 0.00 43.56 3.16
2945 3320 3.134458 GCAGCCTTAGCACCTATACAAG 58.866 50.000 0.00 0.00 43.56 3.16
2946 3321 2.158813 GGCAGCCTTAGCACCTATACAA 60.159 50.000 3.29 0.00 43.56 2.41
2947 3322 1.416401 GGCAGCCTTAGCACCTATACA 59.584 52.381 3.29 0.00 43.56 2.29
2948 3323 1.416401 TGGCAGCCTTAGCACCTATAC 59.584 52.381 14.15 0.00 43.56 1.47
2949 3324 1.801242 TGGCAGCCTTAGCACCTATA 58.199 50.000 14.15 0.00 43.56 1.31
2950 3325 1.143813 ATGGCAGCCTTAGCACCTAT 58.856 50.000 14.15 0.00 43.56 2.57
2951 3326 0.181114 CATGGCAGCCTTAGCACCTA 59.819 55.000 14.15 0.00 43.56 3.08
2952 3327 1.077212 CATGGCAGCCTTAGCACCT 60.077 57.895 14.15 0.00 43.56 4.00
2953 3328 0.107214 TACATGGCAGCCTTAGCACC 60.107 55.000 14.15 0.00 43.56 5.01
2954 3329 1.605710 CATACATGGCAGCCTTAGCAC 59.394 52.381 14.15 0.00 43.56 4.40
2955 3330 1.971481 CATACATGGCAGCCTTAGCA 58.029 50.000 14.15 0.00 43.56 3.49
2956 3331 0.595095 GCATACATGGCAGCCTTAGC 59.405 55.000 14.15 4.61 40.32 3.09
2957 3332 1.971481 TGCATACATGGCAGCCTTAG 58.029 50.000 14.15 4.85 36.11 2.18
2958 3333 2.433662 TTGCATACATGGCAGCCTTA 57.566 45.000 14.15 1.52 43.05 2.69
2959 3334 1.559368 TTTGCATACATGGCAGCCTT 58.441 45.000 14.15 2.78 43.05 4.35
2960 3335 1.559368 TTTTGCATACATGGCAGCCT 58.441 45.000 14.15 0.00 43.05 4.58
2961 3336 2.383368 TTTTTGCATACATGGCAGCC 57.617 45.000 3.66 3.66 43.05 4.85
2977 3352 1.895131 ACCTTGCCGCATCATCTTTTT 59.105 42.857 0.00 0.00 0.00 1.94
2978 3353 1.549203 ACCTTGCCGCATCATCTTTT 58.451 45.000 0.00 0.00 0.00 2.27
2979 3354 2.418368 TACCTTGCCGCATCATCTTT 57.582 45.000 0.00 0.00 0.00 2.52
2980 3355 2.418368 TTACCTTGCCGCATCATCTT 57.582 45.000 0.00 0.00 0.00 2.40
2981 3356 2.645838 ATTACCTTGCCGCATCATCT 57.354 45.000 0.00 0.00 0.00 2.90
2982 3357 4.515191 TCTTAATTACCTTGCCGCATCATC 59.485 41.667 0.00 0.00 0.00 2.92
2983 3358 4.460263 TCTTAATTACCTTGCCGCATCAT 58.540 39.130 0.00 0.00 0.00 2.45
2984 3359 3.876914 CTCTTAATTACCTTGCCGCATCA 59.123 43.478 0.00 0.00 0.00 3.07
2985 3360 3.251004 CCTCTTAATTACCTTGCCGCATC 59.749 47.826 0.00 0.00 0.00 3.91
2986 3361 3.118038 TCCTCTTAATTACCTTGCCGCAT 60.118 43.478 0.00 0.00 0.00 4.73
2987 3362 2.237643 TCCTCTTAATTACCTTGCCGCA 59.762 45.455 0.00 0.00 0.00 5.69
2988 3363 2.914059 TCCTCTTAATTACCTTGCCGC 58.086 47.619 0.00 0.00 0.00 6.53
2989 3364 3.877508 CCTTCCTCTTAATTACCTTGCCG 59.122 47.826 0.00 0.00 0.00 5.69
2990 3365 4.079958 TCCCTTCCTCTTAATTACCTTGCC 60.080 45.833 0.00 0.00 0.00 4.52
2991 3366 5.112129 TCCCTTCCTCTTAATTACCTTGC 57.888 43.478 0.00 0.00 0.00 4.01
2992 3367 6.064717 CCATCCCTTCCTCTTAATTACCTTG 58.935 44.000 0.00 0.00 0.00 3.61
2993 3368 5.134509 CCCATCCCTTCCTCTTAATTACCTT 59.865 44.000 0.00 0.00 0.00 3.50
2994 3369 4.665483 CCCATCCCTTCCTCTTAATTACCT 59.335 45.833 0.00 0.00 0.00 3.08
2995 3370 4.415846 ACCCATCCCTTCCTCTTAATTACC 59.584 45.833 0.00 0.00 0.00 2.85
2996 3371 5.104067 ACACCCATCCCTTCCTCTTAATTAC 60.104 44.000 0.00 0.00 0.00 1.89
2997 3372 5.043762 ACACCCATCCCTTCCTCTTAATTA 58.956 41.667 0.00 0.00 0.00 1.40
2998 3373 3.858638 ACACCCATCCCTTCCTCTTAATT 59.141 43.478 0.00 0.00 0.00 1.40
2999 3374 3.203040 CACACCCATCCCTTCCTCTTAAT 59.797 47.826 0.00 0.00 0.00 1.40
3000 3375 2.576191 CACACCCATCCCTTCCTCTTAA 59.424 50.000 0.00 0.00 0.00 1.85
3001 3376 2.196595 CACACCCATCCCTTCCTCTTA 58.803 52.381 0.00 0.00 0.00 2.10
3002 3377 0.995024 CACACCCATCCCTTCCTCTT 59.005 55.000 0.00 0.00 0.00 2.85
3003 3378 0.119155 TCACACCCATCCCTTCCTCT 59.881 55.000 0.00 0.00 0.00 3.69
3004 3379 1.133976 CATCACACCCATCCCTTCCTC 60.134 57.143 0.00 0.00 0.00 3.71
3005 3380 0.921896 CATCACACCCATCCCTTCCT 59.078 55.000 0.00 0.00 0.00 3.36
3006 3381 0.918983 TCATCACACCCATCCCTTCC 59.081 55.000 0.00 0.00 0.00 3.46
3007 3382 1.408822 GGTCATCACACCCATCCCTTC 60.409 57.143 0.00 0.00 0.00 3.46
3008 3383 0.625849 GGTCATCACACCCATCCCTT 59.374 55.000 0.00 0.00 0.00 3.95
3009 3384 2.311287 GGTCATCACACCCATCCCT 58.689 57.895 0.00 0.00 0.00 4.20
3010 3385 4.986467 GGTCATCACACCCATCCC 57.014 61.111 0.00 0.00 0.00 3.85
3034 3409 0.249826 CCGCACCTGGCATTGTTTTT 60.250 50.000 0.00 0.00 45.17 1.94
3035 3410 1.367102 CCGCACCTGGCATTGTTTT 59.633 52.632 0.00 0.00 45.17 2.43
3036 3411 2.573083 CCCGCACCTGGCATTGTTT 61.573 57.895 0.00 0.00 45.17 2.83
3037 3412 2.990967 CCCGCACCTGGCATTGTT 60.991 61.111 0.00 0.00 45.17 2.83
3038 3413 3.505790 TTCCCGCACCTGGCATTGT 62.506 57.895 0.00 0.00 45.17 2.71
3039 3414 2.676121 TTCCCGCACCTGGCATTG 60.676 61.111 0.00 0.00 45.17 2.82
3040 3415 2.676471 GTTCCCGCACCTGGCATT 60.676 61.111 0.00 0.00 45.17 3.56
3041 3416 1.920734 TATGTTCCCGCACCTGGCAT 61.921 55.000 0.00 0.00 45.17 4.40
3042 3417 2.130821 TTATGTTCCCGCACCTGGCA 62.131 55.000 0.00 0.00 45.17 4.92
3043 3418 1.376609 CTTATGTTCCCGCACCTGGC 61.377 60.000 0.00 0.00 39.90 4.85
3044 3419 0.748005 CCTTATGTTCCCGCACCTGG 60.748 60.000 0.00 0.00 0.00 4.45
3045 3420 0.251916 TCCTTATGTTCCCGCACCTG 59.748 55.000 0.00 0.00 0.00 4.00
3046 3421 0.988832 TTCCTTATGTTCCCGCACCT 59.011 50.000 0.00 0.00 0.00 4.00
3047 3422 1.828979 TTTCCTTATGTTCCCGCACC 58.171 50.000 0.00 0.00 0.00 5.01
3048 3423 2.554893 TGTTTTCCTTATGTTCCCGCAC 59.445 45.455 0.00 0.00 0.00 5.34
3049 3424 2.554893 GTGTTTTCCTTATGTTCCCGCA 59.445 45.455 0.00 0.00 0.00 5.69
3050 3425 2.817844 AGTGTTTTCCTTATGTTCCCGC 59.182 45.455 0.00 0.00 0.00 6.13
3051 3426 6.563222 TTAAGTGTTTTCCTTATGTTCCCG 57.437 37.500 0.00 0.00 0.00 5.14
3052 3427 8.581578 TCATTTAAGTGTTTTCCTTATGTTCCC 58.418 33.333 0.00 0.00 0.00 3.97
3053 3428 9.974980 TTCATTTAAGTGTTTTCCTTATGTTCC 57.025 29.630 0.00 0.00 0.00 3.62
3061 3436 9.803315 GAGTTTCTTTCATTTAAGTGTTTTCCT 57.197 29.630 0.00 0.00 0.00 3.36
3062 3437 9.581099 TGAGTTTCTTTCATTTAAGTGTTTTCC 57.419 29.630 0.00 0.00 0.00 3.13
3064 3439 9.366216 GGTGAGTTTCTTTCATTTAAGTGTTTT 57.634 29.630 0.00 0.00 0.00 2.43
3065 3440 8.527810 TGGTGAGTTTCTTTCATTTAAGTGTTT 58.472 29.630 0.00 0.00 0.00 2.83
3066 3441 8.062065 TGGTGAGTTTCTTTCATTTAAGTGTT 57.938 30.769 0.00 0.00 0.00 3.32
3067 3442 7.639113 TGGTGAGTTTCTTTCATTTAAGTGT 57.361 32.000 0.00 0.00 0.00 3.55
3068 3443 8.971321 CATTGGTGAGTTTCTTTCATTTAAGTG 58.029 33.333 0.00 0.00 0.00 3.16
3069 3444 8.912988 TCATTGGTGAGTTTCTTTCATTTAAGT 58.087 29.630 0.00 0.00 0.00 2.24
3070 3445 9.748708 TTCATTGGTGAGTTTCTTTCATTTAAG 57.251 29.630 0.00 0.00 35.39 1.85
3072 3447 9.695526 CATTCATTGGTGAGTTTCTTTCATTTA 57.304 29.630 0.00 0.00 35.39 1.40
3073 3448 7.658575 CCATTCATTGGTGAGTTTCTTTCATTT 59.341 33.333 0.00 0.00 40.99 2.32
3074 3449 7.015487 TCCATTCATTGGTGAGTTTCTTTCATT 59.985 33.333 0.00 0.00 46.52 2.57
3075 3450 6.494491 TCCATTCATTGGTGAGTTTCTTTCAT 59.506 34.615 0.00 0.00 46.52 2.57
3076 3451 5.832595 TCCATTCATTGGTGAGTTTCTTTCA 59.167 36.000 0.00 0.00 46.52 2.69
3077 3452 6.331369 TCCATTCATTGGTGAGTTTCTTTC 57.669 37.500 0.00 0.00 46.52 2.62
3078 3453 6.923199 ATCCATTCATTGGTGAGTTTCTTT 57.077 33.333 0.00 0.00 46.52 2.52
3079 3454 7.671398 AGTTATCCATTCATTGGTGAGTTTCTT 59.329 33.333 0.00 0.00 46.52 2.52
3080 3455 7.177878 AGTTATCCATTCATTGGTGAGTTTCT 58.822 34.615 0.00 0.00 46.52 2.52
3081 3456 7.396540 AGTTATCCATTCATTGGTGAGTTTC 57.603 36.000 0.00 0.00 46.52 2.78
3082 3457 7.781324 AAGTTATCCATTCATTGGTGAGTTT 57.219 32.000 0.00 0.00 46.52 2.66
3083 3458 7.781324 AAAGTTATCCATTCATTGGTGAGTT 57.219 32.000 0.00 0.00 46.52 3.01
3084 3459 8.109634 AGTAAAGTTATCCATTCATTGGTGAGT 58.890 33.333 0.00 0.00 46.52 3.41
3085 3460 8.511604 AGTAAAGTTATCCATTCATTGGTGAG 57.488 34.615 0.00 0.00 46.52 3.51
3086 3461 8.739039 CAAGTAAAGTTATCCATTCATTGGTGA 58.261 33.333 0.00 0.00 46.52 4.02
3087 3462 7.489113 GCAAGTAAAGTTATCCATTCATTGGTG 59.511 37.037 0.00 0.00 46.52 4.17
3088 3463 7.397192 AGCAAGTAAAGTTATCCATTCATTGGT 59.603 33.333 0.00 0.00 46.52 3.67
3112 3487 7.941795 AGCATGCTTCATTTAATGATTTAGC 57.058 32.000 16.30 18.08 39.76 3.09
3114 3489 9.467258 GCTAAGCATGCTTCATTTAATGATTTA 57.533 29.630 35.10 12.44 39.39 1.40
3115 3490 8.202137 AGCTAAGCATGCTTCATTTAATGATTT 58.798 29.630 35.10 10.06 39.39 2.17
3116 3491 7.723324 AGCTAAGCATGCTTCATTTAATGATT 58.277 30.769 35.10 10.53 39.39 2.57
3117 3492 7.286215 AGCTAAGCATGCTTCATTTAATGAT 57.714 32.000 35.10 10.74 39.39 2.45
3118 3493 6.704289 AGCTAAGCATGCTTCATTTAATGA 57.296 33.333 35.10 14.34 37.52 2.57
3119 3494 7.420002 TGTAGCTAAGCATGCTTCATTTAATG 58.580 34.615 35.10 16.30 41.46 1.90
3120 3495 7.572523 TGTAGCTAAGCATGCTTCATTTAAT 57.427 32.000 35.10 17.27 41.46 1.40
3121 3496 7.094420 TGTTGTAGCTAAGCATGCTTCATTTAA 60.094 33.333 35.10 20.42 41.46 1.52
3122 3497 6.374053 TGTTGTAGCTAAGCATGCTTCATTTA 59.626 34.615 35.10 19.78 41.46 1.40
3123 3498 5.183713 TGTTGTAGCTAAGCATGCTTCATTT 59.816 36.000 35.10 20.73 41.46 2.32
3124 3499 4.701651 TGTTGTAGCTAAGCATGCTTCATT 59.298 37.500 35.10 22.37 41.46 2.57
3125 3500 4.264253 TGTTGTAGCTAAGCATGCTTCAT 58.736 39.130 35.10 23.15 41.46 2.57
3126 3501 3.673902 TGTTGTAGCTAAGCATGCTTCA 58.326 40.909 35.10 23.20 41.46 3.02
3127 3502 4.154918 ACTTGTTGTAGCTAAGCATGCTTC 59.845 41.667 35.10 22.04 41.46 3.86
3128 3503 4.074970 ACTTGTTGTAGCTAAGCATGCTT 58.925 39.130 33.70 33.70 41.46 3.91
3129 3504 3.679389 ACTTGTTGTAGCTAAGCATGCT 58.321 40.909 16.30 16.30 43.79 3.79
3130 3505 4.425577 AACTTGTTGTAGCTAAGCATGC 57.574 40.909 10.51 10.51 0.00 4.06
3131 3506 6.024049 GCTTAACTTGTTGTAGCTAAGCATG 58.976 40.000 11.74 0.39 43.92 4.06
3132 3507 5.705441 TGCTTAACTTGTTGTAGCTAAGCAT 59.295 36.000 14.17 0.00 46.64 3.79
3133 3508 5.607119 GCTTAACTTGTTGTAGCTAAGCA 57.393 39.130 11.74 0.00 43.92 3.91
3134 3509 5.383130 GTGCTTAACTTGTTGTAGCTAAGC 58.617 41.667 17.04 10.34 44.38 3.09
3135 3510 5.468746 TGGTGCTTAACTTGTTGTAGCTAAG 59.531 40.000 17.04 0.00 32.86 2.18
3136 3511 5.369833 TGGTGCTTAACTTGTTGTAGCTAA 58.630 37.500 17.04 0.00 32.86 3.09
3137 3512 4.963373 TGGTGCTTAACTTGTTGTAGCTA 58.037 39.130 17.04 0.00 32.86 3.32
3138 3513 3.815809 TGGTGCTTAACTTGTTGTAGCT 58.184 40.909 17.04 0.00 32.86 3.32
3139 3514 4.766404 ATGGTGCTTAACTTGTTGTAGC 57.234 40.909 12.38 12.38 32.42 3.58
3140 3515 6.991485 CAAATGGTGCTTAACTTGTTGTAG 57.009 37.500 0.00 0.00 0.00 2.74
3163 3538 1.273327 AGCAACTAAAGTGCCCAATGC 59.727 47.619 0.00 0.00 41.77 3.56
3164 3539 3.665745 AAGCAACTAAAGTGCCCAATG 57.334 42.857 0.00 0.00 0.00 2.82
3165 3540 4.407365 ACTAAGCAACTAAAGTGCCCAAT 58.593 39.130 0.00 0.00 0.00 3.16
3166 3541 3.827722 ACTAAGCAACTAAAGTGCCCAA 58.172 40.909 0.00 0.00 0.00 4.12
3167 3542 3.502123 ACTAAGCAACTAAAGTGCCCA 57.498 42.857 0.00 0.00 0.00 5.36
3168 3543 6.510879 AATAACTAAGCAACTAAAGTGCCC 57.489 37.500 0.00 0.00 0.00 5.36
3169 3544 8.727910 AGTAAATAACTAAGCAACTAAAGTGCC 58.272 33.333 0.00 0.00 36.36 5.01
3170 3545 9.543018 CAGTAAATAACTAAGCAACTAAAGTGC 57.457 33.333 0.00 0.00 35.76 4.40
3178 3553 9.326339 GCTAAACACAGTAAATAACTAAGCAAC 57.674 33.333 0.00 0.00 35.76 4.17
3179 3554 9.058174 TGCTAAACACAGTAAATAACTAAGCAA 57.942 29.630 0.00 0.00 35.76 3.91
3180 3555 8.610248 TGCTAAACACAGTAAATAACTAAGCA 57.390 30.769 0.00 0.00 35.76 3.91
3197 3572 4.020218 AGTGCTAAGATGAGGTGCTAAACA 60.020 41.667 0.00 0.00 0.00 2.83
3198 3573 4.508662 AGTGCTAAGATGAGGTGCTAAAC 58.491 43.478 0.00 0.00 0.00 2.01
3199 3574 4.826274 AGTGCTAAGATGAGGTGCTAAA 57.174 40.909 0.00 0.00 0.00 1.85
3200 3575 4.956700 ACTAGTGCTAAGATGAGGTGCTAA 59.043 41.667 0.00 0.00 0.00 3.09
3201 3576 4.339530 CACTAGTGCTAAGATGAGGTGCTA 59.660 45.833 10.54 0.00 0.00 3.49
3202 3577 3.131933 CACTAGTGCTAAGATGAGGTGCT 59.868 47.826 10.54 0.00 0.00 4.40
3203 3578 3.452474 CACTAGTGCTAAGATGAGGTGC 58.548 50.000 10.54 0.00 0.00 5.01
3217 3592 1.556911 ACCTCCTCCAATGCACTAGTG 59.443 52.381 18.93 18.93 0.00 2.74
3218 3593 1.834263 GACCTCCTCCAATGCACTAGT 59.166 52.381 0.00 0.00 0.00 2.57
3219 3594 2.102252 GAGACCTCCTCCAATGCACTAG 59.898 54.545 0.00 0.00 35.87 2.57
3220 3595 2.111384 GAGACCTCCTCCAATGCACTA 58.889 52.381 0.00 0.00 35.87 2.74
3221 3596 0.908198 GAGACCTCCTCCAATGCACT 59.092 55.000 0.00 0.00 35.87 4.40
3222 3597 0.615331 TGAGACCTCCTCCAATGCAC 59.385 55.000 0.00 0.00 41.25 4.57
3223 3598 0.907486 CTGAGACCTCCTCCAATGCA 59.093 55.000 0.00 0.00 41.25 3.96
3224 3599 1.198713 TCTGAGACCTCCTCCAATGC 58.801 55.000 0.00 0.00 41.25 3.56
3225 3600 4.898265 TCTATTCTGAGACCTCCTCCAATG 59.102 45.833 0.00 0.00 41.25 2.82
3226 3601 5.149584 TCTATTCTGAGACCTCCTCCAAT 57.850 43.478 0.00 0.00 41.25 3.16
3227 3602 4.609866 TCTATTCTGAGACCTCCTCCAA 57.390 45.455 0.00 0.00 41.25 3.53
3228 3603 4.230733 TCTTCTATTCTGAGACCTCCTCCA 59.769 45.833 0.00 0.00 41.25 3.86
3229 3604 4.798882 TCTTCTATTCTGAGACCTCCTCC 58.201 47.826 0.00 0.00 41.25 4.30
3230 3605 5.299279 CACTCTTCTATTCTGAGACCTCCTC 59.701 48.000 0.00 0.00 42.30 3.71
3231 3606 5.044476 TCACTCTTCTATTCTGAGACCTCCT 60.044 44.000 0.00 0.00 0.00 3.69
3232 3607 5.197451 TCACTCTTCTATTCTGAGACCTCC 58.803 45.833 0.00 0.00 0.00 4.30
3233 3608 5.299279 CCTCACTCTTCTATTCTGAGACCTC 59.701 48.000 0.00 0.00 31.69 3.85
3234 3609 5.200483 CCTCACTCTTCTATTCTGAGACCT 58.800 45.833 0.00 0.00 31.69 3.85
3235 3610 4.340950 CCCTCACTCTTCTATTCTGAGACC 59.659 50.000 0.00 0.00 31.69 3.85
3236 3611 4.953579 ACCCTCACTCTTCTATTCTGAGAC 59.046 45.833 0.00 0.00 31.69 3.36
3237 3612 5.197451 GACCCTCACTCTTCTATTCTGAGA 58.803 45.833 0.00 0.00 31.69 3.27
3238 3613 4.036262 CGACCCTCACTCTTCTATTCTGAG 59.964 50.000 0.00 0.00 0.00 3.35
3239 3614 3.948473 CGACCCTCACTCTTCTATTCTGA 59.052 47.826 0.00 0.00 0.00 3.27
3240 3615 3.490078 GCGACCCTCACTCTTCTATTCTG 60.490 52.174 0.00 0.00 0.00 3.02
3253 3628 2.779755 AATGTGTATTGCGACCCTCA 57.220 45.000 0.00 0.00 0.00 3.86
3260 3635 4.577687 ACGTGAGTAAATGTGTATTGCG 57.422 40.909 0.00 0.00 46.88 4.85
3278 3653 2.420129 GGGGCATACAGAAATCTCACGT 60.420 50.000 0.00 0.00 0.00 4.49
3291 3666 5.894298 TGGATAGATATGATGGGGCATAC 57.106 43.478 0.00 0.00 33.88 2.39
3324 3699 3.813166 ACGACTGAATCCACGAACAAAAT 59.187 39.130 0.00 0.00 0.00 1.82
3326 3701 2.828877 ACGACTGAATCCACGAACAAA 58.171 42.857 0.00 0.00 0.00 2.83
3329 3704 2.155155 GTCAACGACTGAATCCACGAAC 59.845 50.000 0.00 0.00 35.22 3.95
3423 3798 7.814107 TGAAAACATGGCTCATAAGATGAAAAC 59.186 33.333 0.00 0.00 39.11 2.43
3434 3809 6.238953 GCTCATAAGATGAAAACATGGCTCAT 60.239 38.462 0.00 1.78 39.11 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.