Multiple sequence alignment - TraesCS5B01G388300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G388300 chr5B 100.000 6386 0 0 1 6386 567160531 567154146 0.000000e+00 11793.0
1 TraesCS5B01G388300 chr5B 97.906 191 4 0 2696 2886 420818652 420818842 1.330000e-86 331.0
2 TraesCS5B01G388300 chr5B 96.098 205 5 3 2684 2885 434671562 434671358 1.330000e-86 331.0
3 TraesCS5B01G388300 chr5B 96.739 184 4 2 2932 3113 422968670 422968853 8.040000e-79 305.0
4 TraesCS5B01G388300 chr5B 95.767 189 7 1 2932 3119 420818656 420818844 2.890000e-78 303.0
5 TraesCS5B01G388300 chr5B 80.645 186 25 9 9 185 367096748 367096565 4.020000e-27 134.0
6 TraesCS5B01G388300 chr5B 100.000 29 0 0 1904 1932 249580559 249580587 3.000000e-03 54.7
7 TraesCS5B01G388300 chr5B 100.000 28 0 0 4417 4444 567156058 567156031 1.200000e-02 52.8
8 TraesCS5B01G388300 chr5B 100.000 28 0 0 4474 4501 567156115 567156088 1.200000e-02 52.8
9 TraesCS5B01G388300 chr5D 95.382 2577 72 15 3117 5673 461216860 461214311 0.000000e+00 4056.0
10 TraesCS5B01G388300 chr5D 92.535 2773 117 33 1 2700 461219647 461216892 0.000000e+00 3892.0
11 TraesCS5B01G388300 chr5D 91.460 644 32 10 5725 6368 461213891 461213271 0.000000e+00 863.0
12 TraesCS5B01G388300 chr5D 98.936 188 2 0 2698 2885 236022595 236022782 2.850000e-88 337.0
13 TraesCS5B01G388300 chr5D 95.767 189 7 1 2932 3119 393820789 393820601 2.890000e-78 303.0
14 TraesCS5B01G388300 chr5D 96.491 57 2 0 5672 5728 461214202 461214146 1.900000e-15 95.3
15 TraesCS5B01G388300 chr5D 97.872 47 1 0 2886 2932 461216899 461216853 1.480000e-11 82.4
16 TraesCS5B01G388300 chr5D 92.683 41 3 0 1906 1946 231563618 231563658 6.910000e-05 60.2
17 TraesCS5B01G388300 chr5D 100.000 28 0 0 4417 4444 461215508 461215481 1.200000e-02 52.8
18 TraesCS5B01G388300 chr5D 100.000 28 0 0 4474 4501 461215565 461215538 1.200000e-02 52.8
19 TraesCS5B01G388300 chr5A 94.362 2412 95 15 3117 5519 581304224 581301845 0.000000e+00 3663.0
20 TraesCS5B01G388300 chr5A 91.471 2134 103 39 453 2528 581306491 581304379 0.000000e+00 2859.0
21 TraesCS5B01G388300 chr5A 93.412 850 37 11 5541 6386 581301851 581301017 0.000000e+00 1242.0
22 TraesCS5B01G388300 chr5A 94.245 139 7 1 2562 2700 581304393 581304256 1.800000e-50 211.0
23 TraesCS5B01G388300 chr5A 83.673 196 21 9 1 187 309202890 309203083 2.370000e-39 174.0
24 TraesCS5B01G388300 chr5A 95.745 47 2 0 2886 2932 581304263 581304217 6.870000e-10 76.8
25 TraesCS5B01G388300 chr3B 98.947 190 1 1 2698 2886 226085872 226085683 7.930000e-89 339.0
26 TraesCS5B01G388300 chr3B 95.767 189 7 1 2932 3119 226085869 226085681 2.890000e-78 303.0
27 TraesCS5B01G388300 chr3B 80.749 187 27 6 9 187 188764943 188764758 3.110000e-28 137.0
28 TraesCS5B01G388300 chr3B 80.978 184 25 8 12 187 388109760 388109579 3.110000e-28 137.0
29 TraesCS5B01G388300 chr2B 98.942 189 2 0 2697 2885 556199472 556199660 7.930000e-89 339.0
30 TraesCS5B01G388300 chr2B 99.459 185 1 0 2701 2885 496916123 496915939 2.850000e-88 337.0
31 TraesCS5B01G388300 chr2B 95.767 189 7 1 2932 3119 164823796 164823608 2.890000e-78 303.0
32 TraesCS5B01G388300 chr7B 99.459 185 1 0 2701 2885 168758380 168758196 2.850000e-88 337.0
33 TraesCS5B01G388300 chr7B 100.000 33 0 0 1906 1938 612010995 612011027 1.920000e-05 62.1
34 TraesCS5B01G388300 chr7B 100.000 32 0 0 1906 1937 730232749 730232780 6.910000e-05 60.2
35 TraesCS5B01G388300 chr3A 97.906 191 4 0 2696 2886 68617263 68617453 1.330000e-86 331.0
36 TraesCS5B01G388300 chr3A 93.023 43 2 1 1906 1948 750255581 750255622 1.920000e-05 62.1
37 TraesCS5B01G388300 chr3A 92.500 40 2 1 1906 1944 680750789 680750750 8.940000e-04 56.5
38 TraesCS5B01G388300 chr6B 95.610 205 5 2 2686 2886 712661636 712661432 6.170000e-85 326.0
39 TraesCS5B01G388300 chr7D 96.316 190 5 2 2932 3119 162910472 162910283 1.730000e-80 311.0
40 TraesCS5B01G388300 chr7A 96.721 183 5 1 2932 3113 247011684 247011866 2.890000e-78 303.0
41 TraesCS5B01G388300 chr4B 95.767 189 7 1 2932 3119 656587439 656587251 2.890000e-78 303.0
42 TraesCS5B01G388300 chr1A 95.767 189 7 1 2932 3119 353016558 353016370 2.890000e-78 303.0
43 TraesCS5B01G388300 chr1A 92.683 41 2 1 1906 1945 500368011 500367971 2.490000e-04 58.4
44 TraesCS5B01G388300 chr2D 82.383 193 25 7 4 188 83550631 83550440 6.630000e-35 159.0
45 TraesCS5B01G388300 chr1D 82.447 188 22 7 9 187 430235576 430235761 3.080000e-33 154.0
46 TraesCS5B01G388300 chr1B 82.105 190 23 9 9 189 380428620 380428807 1.110000e-32 152.0
47 TraesCS5B01G388300 chr4D 82.222 180 25 4 15 187 483371774 483371595 1.430000e-31 148.0
48 TraesCS5B01G388300 chr4A 100.000 33 0 0 1906 1938 114587985 114588017 1.920000e-05 62.1
49 TraesCS5B01G388300 chr6D 92.683 41 2 1 1906 1945 451541607 451541647 2.490000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G388300 chr5B 567154146 567160531 6385 True 11793.000000 11793 100.000000 1 6386 1 chr5B.!!$R3 6385
1 TraesCS5B01G388300 chr5D 461213271 461219647 6376 True 1299.185714 4056 96.248571 1 6368 7 chr5D.!!$R2 6367
2 TraesCS5B01G388300 chr5A 581301017 581306491 5474 True 1610.360000 3663 93.847000 453 6386 5 chr5A.!!$R1 5933

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
369 380 0.179045 AGGTATGGTCGCCATTCAGC 60.179 55.0 15.07 8.96 42.23 4.26 F
779 835 0.467804 GCAACTCCCCATCTCCTCTC 59.532 60.0 0.00 0.00 0.00 3.20 F
2735 2835 0.725117 GCTAGGCGTTAATTGTGCGT 59.275 50.0 0.00 0.00 0.00 5.24 F
3064 3164 0.035176 AATGCGTTTTGCCAATGCCT 59.965 45.0 7.31 0.00 45.60 4.75 F
3074 3174 0.036022 GCCAATGCCTAGAGCCTAGG 59.964 60.0 18.85 18.85 42.71 3.02 F
4321 4443 1.078759 CGACAAGAGGCATGACGTCC 61.079 60.0 14.12 0.00 33.49 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1406 1475 1.011595 AGAAGGTAGCCCAGAGGAGA 58.988 55.0 0.00 0.0 33.47 3.71 R
2755 2855 0.521291 GCATGCGCTTTGGTCAGTAA 59.479 50.0 9.73 0.0 34.30 2.24 R
4344 4466 0.826062 CATTTGTTCATCCCTGCCCC 59.174 55.0 0.00 0.0 0.00 5.80 R
4920 5042 0.171007 GTTGGCCATGAACATCACCG 59.829 55.0 6.09 0.0 0.00 4.94 R
4992 5114 0.947244 CCATGAAAGCCGCATACTCC 59.053 55.0 0.00 0.0 0.00 3.85 R
6015 6511 0.032813 CCACATCCAAAGCCAGGGAT 60.033 55.0 0.00 0.0 44.65 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 8.708378 AGAAATAATTCTCAAAAATCCCCATCC 58.292 33.333 0.00 0.00 42.26 3.51
61 62 8.885494 TCCAATTTGGACAACTTTTATTTCTG 57.115 30.769 14.24 0.00 42.67 3.02
129 136 5.927689 TCCAGATTGTTCAAATGATGCAAAC 59.072 36.000 0.00 0.00 0.00 2.93
137 144 4.309099 TCAAATGATGCAAACTGAAAGGC 58.691 39.130 0.00 0.00 39.30 4.35
142 149 3.870419 TGATGCAAACTGAAAGGCAAAAC 59.130 39.130 0.00 0.00 40.02 2.43
147 154 5.877012 TGCAAACTGAAAGGCAAAACAATAA 59.123 32.000 0.00 0.00 39.30 1.40
150 157 7.625185 GCAAACTGAAAGGCAAAACAATAACAA 60.625 33.333 0.00 0.00 39.30 2.83
191 198 3.289702 CGTTTGAGACGTATCATGCAC 57.710 47.619 14.51 10.16 46.49 4.57
215 222 7.387673 CACCAGAAACACTCACATTTAGACATA 59.612 37.037 0.00 0.00 0.00 2.29
264 274 2.541762 GTGATTATGCTTCCACGAGAGC 59.458 50.000 0.00 0.00 0.00 4.09
332 342 1.810755 CGTTGAAGGGGAACTAAAGGC 59.189 52.381 0.00 0.00 0.00 4.35
337 347 3.227614 GAAGGGGAACTAAAGGCAACAA 58.772 45.455 0.00 0.00 41.41 2.83
349 360 1.063266 AGGCAACAAGGTGGAAGGAAA 60.063 47.619 0.00 0.00 41.41 3.13
362 373 2.014857 GAAGGAAAAGGTATGGTCGCC 58.985 52.381 0.00 0.00 0.00 5.54
369 380 0.179045 AGGTATGGTCGCCATTCAGC 60.179 55.000 15.07 8.96 42.23 4.26
386 397 0.904649 AGCCATCAGATTCACCGACA 59.095 50.000 0.00 0.00 0.00 4.35
410 421 4.390264 GGATGAAAAGGTAGGCCATCTAC 58.610 47.826 5.01 0.00 45.78 2.59
419 430 1.130054 AGGCCATCTACCGCATCCAT 61.130 55.000 5.01 0.00 0.00 3.41
468 488 2.438434 CCATCCAAGGGCGGTGAC 60.438 66.667 0.00 0.00 0.00 3.67
553 573 1.103398 ATAATGGCCTCCAACGCAGC 61.103 55.000 3.32 0.00 36.95 5.25
554 574 2.476852 TAATGGCCTCCAACGCAGCA 62.477 55.000 3.32 0.00 36.95 4.41
555 575 3.866379 ATGGCCTCCAACGCAGCAA 62.866 57.895 3.32 0.00 36.95 3.91
636 659 1.979855 CACCACACCACCATCTTCAA 58.020 50.000 0.00 0.00 0.00 2.69
641 664 3.070018 CACACCACCATCTTCAAGAGAC 58.930 50.000 0.00 0.00 37.17 3.36
649 672 2.103153 TCTTCAAGAGACCCACCACT 57.897 50.000 0.00 0.00 0.00 4.00
727 775 1.398390 CCAAGCTCGAAACACCATAGC 59.602 52.381 0.00 0.00 0.00 2.97
728 776 2.350522 CAAGCTCGAAACACCATAGCT 58.649 47.619 0.00 0.00 45.12 3.32
729 777 3.521560 CAAGCTCGAAACACCATAGCTA 58.478 45.455 0.00 0.00 42.49 3.32
779 835 0.467804 GCAACTCCCCATCTCCTCTC 59.532 60.000 0.00 0.00 0.00 3.20
793 849 2.599281 TCTCCGTCCGCCACTTGA 60.599 61.111 0.00 0.00 0.00 3.02
795 851 3.934391 CTCCGTCCGCCACTTGACC 62.934 68.421 0.00 0.00 0.00 4.02
1099 1168 4.047125 CGCCCACCACCCCTGAAT 62.047 66.667 0.00 0.00 0.00 2.57
1119 1188 3.854669 CAGCCCTAGACCAGCGGG 61.855 72.222 0.00 0.00 41.06 6.13
1558 1632 2.825836 GGATCTGCGGCTTGTGGG 60.826 66.667 0.00 0.00 0.00 4.61
1592 1666 1.576356 GGCGATCTGGTGATCTCAAC 58.424 55.000 0.00 0.00 45.10 3.18
1782 1870 2.621998 GTCATTCAGGCTGGATGGATTG 59.378 50.000 30.61 11.13 0.00 2.67
1878 1966 9.528018 TTTTTCACTGGAGAACACATTTTATTC 57.472 29.630 0.00 0.00 0.00 1.75
1887 1975 8.743714 GGAGAACACATTTTATTCATCCTTTCT 58.256 33.333 0.00 0.00 0.00 2.52
1890 1978 9.912634 GAACACATTTTATTCATCCTTTCTCAA 57.087 29.630 0.00 0.00 0.00 3.02
1920 2008 8.937634 ATTTCTGCATTCATCTATTTTGGAAC 57.062 30.769 0.00 0.00 0.00 3.62
1921 2009 6.122850 TCTGCATTCATCTATTTTGGAACG 57.877 37.500 0.00 0.00 0.00 3.95
1922 2010 5.066375 TCTGCATTCATCTATTTTGGAACGG 59.934 40.000 0.00 0.00 0.00 4.44
1923 2011 4.946772 TGCATTCATCTATTTTGGAACGGA 59.053 37.500 0.00 0.00 0.00 4.69
1924 2012 5.066375 TGCATTCATCTATTTTGGAACGGAG 59.934 40.000 0.00 0.00 0.00 4.63
1925 2013 5.506317 GCATTCATCTATTTTGGAACGGAGG 60.506 44.000 0.00 0.00 0.00 4.30
1926 2014 4.150897 TCATCTATTTTGGAACGGAGGG 57.849 45.455 0.00 0.00 0.00 4.30
1963 2051 2.705127 ACCTACCGTACTTTCCCAACAA 59.295 45.455 0.00 0.00 0.00 2.83
1969 2057 4.516321 ACCGTACTTTCCCAACAACAATAC 59.484 41.667 0.00 0.00 0.00 1.89
2371 2471 1.980765 TCACATCAGTGGAGAAGGCTT 59.019 47.619 0.00 0.00 45.91 4.35
2424 2524 1.358725 GCATAAGCAGCGAACGTGGA 61.359 55.000 0.00 0.00 41.58 4.02
2494 2594 8.286191 AGTAGAGGGCAAAAATCAATTCTTAG 57.714 34.615 0.00 0.00 0.00 2.18
2567 2667 4.762251 GTCCTTGAGGTTTAAACTCTGCAT 59.238 41.667 17.50 0.00 35.98 3.96
2699 2799 5.285401 TCCATCCTACTTGGTTGAGGATAA 58.715 41.667 2.42 0.00 46.30 1.75
2700 2800 5.130477 TCCATCCTACTTGGTTGAGGATAAC 59.870 44.000 2.42 0.00 46.30 1.89
2701 2801 5.104527 CCATCCTACTTGGTTGAGGATAACA 60.105 44.000 2.42 0.00 46.30 2.41
2702 2802 6.409695 CCATCCTACTTGGTTGAGGATAACAT 60.410 42.308 2.42 0.00 46.30 2.71
2703 2803 7.202093 CCATCCTACTTGGTTGAGGATAACATA 60.202 40.741 2.42 0.00 46.30 2.29
2704 2804 7.361457 TCCTACTTGGTTGAGGATAACATAG 57.639 40.000 0.00 0.00 34.36 2.23
2705 2805 6.901300 TCCTACTTGGTTGAGGATAACATAGT 59.099 38.462 0.00 0.00 34.36 2.12
2706 2806 7.402071 TCCTACTTGGTTGAGGATAACATAGTT 59.598 37.037 0.00 0.00 34.36 2.24
2707 2807 7.711339 CCTACTTGGTTGAGGATAACATAGTTC 59.289 40.741 0.00 0.00 32.07 3.01
2708 2808 7.016153 ACTTGGTTGAGGATAACATAGTTCA 57.984 36.000 0.00 0.00 32.22 3.18
2709 2809 7.458397 ACTTGGTTGAGGATAACATAGTTCAA 58.542 34.615 0.00 0.00 32.22 2.69
2710 2810 7.942341 ACTTGGTTGAGGATAACATAGTTCAAA 59.058 33.333 0.00 0.00 32.22 2.69
2711 2811 8.698973 TTGGTTGAGGATAACATAGTTCAAAA 57.301 30.769 0.00 0.00 32.22 2.44
2712 2812 8.698973 TGGTTGAGGATAACATAGTTCAAAAA 57.301 30.769 0.00 0.00 32.22 1.94
2734 2834 3.509266 GCTAGGCGTTAATTGTGCG 57.491 52.632 0.00 0.00 0.00 5.34
2735 2835 0.725117 GCTAGGCGTTAATTGTGCGT 59.275 50.000 0.00 0.00 0.00 5.24
2736 2836 1.129811 GCTAGGCGTTAATTGTGCGTT 59.870 47.619 0.00 0.00 0.00 4.84
2737 2837 2.413634 GCTAGGCGTTAATTGTGCGTTT 60.414 45.455 0.00 0.00 0.00 3.60
2738 2838 2.785713 AGGCGTTAATTGTGCGTTTT 57.214 40.000 0.00 0.00 0.00 2.43
2739 2839 2.389998 AGGCGTTAATTGTGCGTTTTG 58.610 42.857 0.00 0.00 0.00 2.44
2740 2840 1.136748 GGCGTTAATTGTGCGTTTTGC 60.137 47.619 0.00 0.00 46.70 3.68
2741 2841 1.136748 GCGTTAATTGTGCGTTTTGCC 60.137 47.619 0.00 0.00 45.60 4.52
2742 2842 2.120232 CGTTAATTGTGCGTTTTGCCA 58.880 42.857 0.00 0.00 45.60 4.92
2743 2843 2.097637 CGTTAATTGTGCGTTTTGCCAC 60.098 45.455 0.00 0.00 45.60 5.01
2744 2844 2.141535 TAATTGTGCGTTTTGCCACC 57.858 45.000 0.00 0.00 45.60 4.61
2745 2845 0.873743 AATTGTGCGTTTTGCCACCG 60.874 50.000 0.00 0.00 45.60 4.94
2746 2846 4.560856 TGTGCGTTTTGCCACCGC 62.561 61.111 0.00 0.00 45.60 5.68
2749 2849 4.279043 GCGTTTTGCCACCGCCTT 62.279 61.111 0.00 0.00 41.50 4.35
2750 2850 2.354539 CGTTTTGCCACCGCCTTG 60.355 61.111 0.00 0.00 0.00 3.61
2751 2851 2.661537 GTTTTGCCACCGCCTTGC 60.662 61.111 0.00 0.00 0.00 4.01
2763 2863 1.502190 GCCTTGCGCTTTACTGACC 59.498 57.895 9.73 0.00 0.00 4.02
2764 2864 1.234615 GCCTTGCGCTTTACTGACCA 61.235 55.000 9.73 0.00 0.00 4.02
2765 2865 1.234821 CCTTGCGCTTTACTGACCAA 58.765 50.000 9.73 0.00 0.00 3.67
2766 2866 1.606668 CCTTGCGCTTTACTGACCAAA 59.393 47.619 9.73 0.00 0.00 3.28
2767 2867 2.350772 CCTTGCGCTTTACTGACCAAAG 60.351 50.000 9.73 0.00 36.32 2.77
2770 2870 3.384702 GCTTTACTGACCAAAGCGC 57.615 52.632 0.00 0.00 45.88 5.92
2771 2871 0.591170 GCTTTACTGACCAAAGCGCA 59.409 50.000 11.47 0.00 45.88 6.09
2772 2872 1.200020 GCTTTACTGACCAAAGCGCAT 59.800 47.619 11.47 0.00 45.88 4.73
2773 2873 2.855180 CTTTACTGACCAAAGCGCATG 58.145 47.619 11.47 8.38 0.00 4.06
2774 2874 0.521291 TTACTGACCAAAGCGCATGC 59.479 50.000 11.47 7.91 43.24 4.06
2788 2888 2.693797 GCATGCTTATGCGCAGTTAT 57.306 45.000 18.32 0.10 44.10 1.89
2789 2889 2.313234 GCATGCTTATGCGCAGTTATG 58.687 47.619 18.32 15.92 44.10 1.90
2803 2903 4.864916 CAGTTATGCACAGATTAAGCGT 57.135 40.909 0.00 0.00 0.00 5.07
2804 2904 5.966636 CAGTTATGCACAGATTAAGCGTA 57.033 39.130 0.00 0.00 0.00 4.42
2805 2905 5.967469 CAGTTATGCACAGATTAAGCGTAG 58.033 41.667 0.00 0.00 32.03 3.51
2806 2906 5.520288 CAGTTATGCACAGATTAAGCGTAGT 59.480 40.000 0.00 0.00 32.03 2.73
2807 2907 6.036083 CAGTTATGCACAGATTAAGCGTAGTT 59.964 38.462 0.00 0.00 32.03 2.24
2808 2908 7.222031 CAGTTATGCACAGATTAAGCGTAGTTA 59.778 37.037 0.00 0.00 32.03 2.24
2809 2909 7.926555 AGTTATGCACAGATTAAGCGTAGTTAT 59.073 33.333 0.00 0.00 32.03 1.89
2810 2910 5.966636 TGCACAGATTAAGCGTAGTTATG 57.033 39.130 0.00 0.00 0.00 1.90
2811 2911 4.270084 TGCACAGATTAAGCGTAGTTATGC 59.730 41.667 0.00 0.00 38.47 3.14
2812 2912 4.606232 GCACAGATTAAGCGTAGTTATGCG 60.606 45.833 0.00 0.00 42.84 4.73
2830 2930 1.201332 GCAATGCGTTTTGCCAACG 59.799 52.632 12.66 12.66 44.94 4.10
2835 2935 4.838959 CGTTTTGCCAACGCCTAG 57.161 55.556 5.44 0.00 36.82 3.02
2836 2936 2.240230 CGTTTTGCCAACGCCTAGA 58.760 52.632 5.44 0.00 36.82 2.43
2837 2937 0.165944 CGTTTTGCCAACGCCTAGAG 59.834 55.000 5.44 0.00 36.82 2.43
2838 2938 0.109735 GTTTTGCCAACGCCTAGAGC 60.110 55.000 0.00 0.00 38.52 4.09
2839 2939 1.241315 TTTTGCCAACGCCTAGAGCC 61.241 55.000 0.00 0.00 38.78 4.70
2840 2940 2.124507 TTTGCCAACGCCTAGAGCCT 62.125 55.000 0.00 0.00 38.78 4.58
2841 2941 1.261938 TTGCCAACGCCTAGAGCCTA 61.262 55.000 0.00 0.00 38.78 3.93
2842 2942 1.068250 GCCAACGCCTAGAGCCTAG 59.932 63.158 0.00 3.06 38.78 3.02
2843 2943 1.742768 CCAACGCCTAGAGCCTAGG 59.257 63.158 18.85 18.85 38.78 3.02
2848 2948 4.350441 CCTAGAGCCTAGGCGCGC 62.350 72.222 28.76 25.94 45.41 6.86
2849 2949 3.291383 CTAGAGCCTAGGCGCGCT 61.291 66.667 32.29 25.96 45.41 5.92
2850 2950 2.833582 TAGAGCCTAGGCGCGCTT 60.834 61.111 32.29 27.46 45.41 4.68
2851 2951 1.516365 CTAGAGCCTAGGCGCGCTTA 61.516 60.000 32.29 27.04 45.41 3.09
2852 2952 1.105167 TAGAGCCTAGGCGCGCTTAA 61.105 55.000 32.29 15.41 45.41 1.85
2853 2953 2.356818 AGAGCCTAGGCGCGCTTAAG 62.357 60.000 32.29 22.56 45.41 1.85
2854 2954 3.640992 GCCTAGGCGCGCTTAAGC 61.641 66.667 32.29 28.27 37.78 3.09
2881 2981 4.880899 GGCGCGCCATTTTTAACT 57.119 50.000 43.55 0.00 35.81 2.24
2883 2983 2.485266 GGCGCGCCATTTTTAACTAT 57.515 45.000 43.55 0.00 35.81 2.12
2884 2984 2.116366 GGCGCGCCATTTTTAACTATG 58.884 47.619 43.55 0.00 35.81 2.23
2885 2985 2.116366 GCGCGCCATTTTTAACTATGG 58.884 47.619 23.24 9.66 43.40 2.74
2886 2986 2.223386 GCGCGCCATTTTTAACTATGGA 60.223 45.455 23.24 0.00 43.25 3.41
2887 2987 3.617669 CGCGCCATTTTTAACTATGGAG 58.382 45.455 15.87 13.85 43.25 3.86
2888 2988 3.548014 CGCGCCATTTTTAACTATGGAGG 60.548 47.826 15.87 9.36 43.25 4.30
2889 2989 3.630312 GCGCCATTTTTAACTATGGAGGA 59.370 43.478 15.87 0.00 43.25 3.71
2890 2990 4.278419 GCGCCATTTTTAACTATGGAGGAT 59.722 41.667 15.87 0.00 43.25 3.24
2891 2991 5.472137 GCGCCATTTTTAACTATGGAGGATA 59.528 40.000 15.87 0.00 43.25 2.59
2897 2997 9.903682 CATTTTTAACTATGGAGGATAATGCTG 57.096 33.333 0.00 0.00 0.00 4.41
2943 3043 6.642683 GCTAGTTAGCGTCATAGTTCAAAA 57.357 37.500 0.00 0.00 39.82 2.44
2944 3044 7.057149 GCTAGTTAGCGTCATAGTTCAAAAA 57.943 36.000 0.00 0.00 39.82 1.94
2965 3065 1.810197 GCGTTAGGCTTAATTGTGCG 58.190 50.000 0.00 0.00 39.11 5.34
2966 3066 1.129811 GCGTTAGGCTTAATTGTGCGT 59.870 47.619 0.00 0.00 39.11 5.24
2967 3067 2.413634 GCGTTAGGCTTAATTGTGCGTT 60.414 45.455 0.00 0.00 39.11 4.84
2968 3068 3.817238 CGTTAGGCTTAATTGTGCGTTT 58.183 40.909 0.00 0.00 0.00 3.60
2969 3069 4.223659 CGTTAGGCTTAATTGTGCGTTTT 58.776 39.130 0.00 0.00 0.00 2.43
2970 3070 4.087930 CGTTAGGCTTAATTGTGCGTTTTG 59.912 41.667 0.00 0.00 0.00 2.44
2971 3071 2.403259 AGGCTTAATTGTGCGTTTTGC 58.597 42.857 0.00 0.00 46.70 3.68
2972 3072 1.459209 GGCTTAATTGTGCGTTTTGCC 59.541 47.619 0.00 0.00 45.60 4.52
2973 3073 2.131183 GCTTAATTGTGCGTTTTGCCA 58.869 42.857 0.00 0.00 45.60 4.92
2974 3074 2.096958 GCTTAATTGTGCGTTTTGCCAC 60.097 45.455 0.00 0.00 45.60 5.01
2975 3075 2.141535 TAATTGTGCGTTTTGCCACC 57.858 45.000 0.00 0.00 45.60 4.61
2976 3076 0.873743 AATTGTGCGTTTTGCCACCG 60.874 50.000 0.00 0.00 45.60 4.94
2977 3077 4.560856 TGTGCGTTTTGCCACCGC 62.561 61.111 0.00 0.00 45.60 5.68
2980 3080 4.279043 GCGTTTTGCCACCGCCTT 62.279 61.111 0.00 0.00 41.50 4.35
2981 3081 2.354539 CGTTTTGCCACCGCCTTG 60.355 61.111 0.00 0.00 0.00 3.61
2982 3082 2.661537 GTTTTGCCACCGCCTTGC 60.662 61.111 0.00 0.00 0.00 4.01
2994 3094 1.502190 GCCTTGCGCTTTACTGACC 59.498 57.895 9.73 0.00 0.00 4.02
2995 3095 1.234615 GCCTTGCGCTTTACTGACCA 61.235 55.000 9.73 0.00 0.00 4.02
2996 3096 1.234821 CCTTGCGCTTTACTGACCAA 58.765 50.000 9.73 0.00 0.00 3.67
2997 3097 1.606668 CCTTGCGCTTTACTGACCAAA 59.393 47.619 9.73 0.00 0.00 3.28
2998 3098 2.350772 CCTTGCGCTTTACTGACCAAAG 60.351 50.000 9.73 0.00 36.32 2.77
3001 3101 3.384702 GCTTTACTGACCAAAGCGC 57.615 52.632 0.00 0.00 45.88 5.92
3002 3102 0.591170 GCTTTACTGACCAAAGCGCA 59.409 50.000 11.47 0.00 45.88 6.09
3003 3103 1.200020 GCTTTACTGACCAAAGCGCAT 59.800 47.619 11.47 0.00 45.88 4.73
3004 3104 2.855180 CTTTACTGACCAAAGCGCATG 58.145 47.619 11.47 8.38 0.00 4.06
3005 3105 0.521291 TTACTGACCAAAGCGCATGC 59.479 50.000 11.47 7.91 43.24 4.06
3019 3119 1.746760 GCATGCTTATGCGCAGTTAC 58.253 50.000 18.32 6.26 44.10 2.50
3020 3120 1.917252 GCATGCTTATGCGCAGTTACG 60.917 52.381 18.32 2.93 44.10 3.18
3031 3131 3.289702 CGCAGTTACGCACAGATTAAG 57.710 47.619 1.04 0.00 0.00 1.85
3032 3132 2.534939 CGCAGTTACGCACAGATTAAGC 60.535 50.000 1.04 0.00 0.00 3.09
3033 3133 2.415168 GCAGTTACGCACAGATTAAGCA 59.585 45.455 0.00 0.00 0.00 3.91
3034 3134 3.063997 GCAGTTACGCACAGATTAAGCAT 59.936 43.478 0.00 0.00 0.00 3.79
3035 3135 4.270084 GCAGTTACGCACAGATTAAGCATA 59.730 41.667 0.00 0.00 0.00 3.14
3036 3136 5.557136 GCAGTTACGCACAGATTAAGCATAG 60.557 44.000 0.00 0.00 0.00 2.23
3037 3137 5.520288 CAGTTACGCACAGATTAAGCATAGT 59.480 40.000 0.00 0.00 0.00 2.12
3038 3138 6.036083 CAGTTACGCACAGATTAAGCATAGTT 59.964 38.462 0.00 0.00 0.00 2.24
3039 3139 7.222031 CAGTTACGCACAGATTAAGCATAGTTA 59.778 37.037 0.00 0.00 0.00 2.24
3040 3140 7.926555 AGTTACGCACAGATTAAGCATAGTTAT 59.073 33.333 0.00 0.00 0.00 1.89
3041 3141 6.530913 ACGCACAGATTAAGCATAGTTATG 57.469 37.500 0.00 0.00 36.78 1.90
3061 3161 3.661229 GCAATGCGTTTTGCCAATG 57.339 47.368 11.84 0.00 44.94 2.82
3062 3162 0.453116 GCAATGCGTTTTGCCAATGC 60.453 50.000 11.84 3.48 44.94 3.56
3063 3163 0.166379 CAATGCGTTTTGCCAATGCC 59.834 50.000 7.31 0.00 45.60 4.40
3064 3164 0.035176 AATGCGTTTTGCCAATGCCT 59.965 45.000 7.31 0.00 45.60 4.75
3065 3165 0.894141 ATGCGTTTTGCCAATGCCTA 59.106 45.000 7.31 0.00 45.60 3.93
3066 3166 0.243365 TGCGTTTTGCCAATGCCTAG 59.757 50.000 7.31 0.00 45.60 3.02
3067 3167 0.525761 GCGTTTTGCCAATGCCTAGA 59.474 50.000 0.00 0.00 37.76 2.43
3068 3168 1.468054 GCGTTTTGCCAATGCCTAGAG 60.468 52.381 0.00 0.00 37.76 2.43
3069 3169 1.468054 CGTTTTGCCAATGCCTAGAGC 60.468 52.381 0.00 0.00 44.14 4.09
3070 3170 1.134995 GTTTTGCCAATGCCTAGAGCC 60.135 52.381 0.00 0.00 42.71 4.70
3071 3171 0.332632 TTTGCCAATGCCTAGAGCCT 59.667 50.000 0.00 0.00 42.71 4.58
3072 3172 1.212375 TTGCCAATGCCTAGAGCCTA 58.788 50.000 0.00 0.00 42.71 3.93
3073 3173 0.761187 TGCCAATGCCTAGAGCCTAG 59.239 55.000 0.00 3.06 42.71 3.02
3074 3174 0.036022 GCCAATGCCTAGAGCCTAGG 59.964 60.000 18.85 18.85 42.71 3.02
3085 3185 3.410958 GCCTAGGCGTGCTTAAGC 58.589 61.111 20.16 20.84 42.50 3.09
3086 3186 2.526120 GCCTAGGCGTGCTTAAGCG 61.526 63.158 20.16 10.25 45.83 4.68
3183 3283 5.146010 TCAACTTGTTTTTGCTTCACCTT 57.854 34.783 0.00 0.00 0.00 3.50
3205 3305 6.757478 CCTTGATACTAGCATCAGCATATGAG 59.243 42.308 6.97 0.00 42.53 2.90
3207 3307 2.956913 ACTAGCATCAGCATATGAGCG 58.043 47.619 6.97 0.00 42.53 5.03
3304 3405 7.324375 CGCCAGTGCATATATTATTTGTTTCTG 59.676 37.037 0.00 0.00 37.32 3.02
3352 3453 6.547510 GCTACTGGAAAATATTGGAGTCCATT 59.452 38.462 14.00 12.39 37.72 3.16
3367 3468 7.782049 TGGAGTCCATTCTACTTAGTGTATTG 58.218 38.462 8.12 0.00 0.00 1.90
3473 3583 7.166167 TCTATTTCAAAGACTTAACCACTCCC 58.834 38.462 0.00 0.00 0.00 4.30
3478 3588 4.368565 AAGACTTAACCACTCCCCTTTC 57.631 45.455 0.00 0.00 0.00 2.62
3643 3759 7.106439 TCCATCAACTTCTTCTGATAGTCTC 57.894 40.000 0.00 0.00 31.04 3.36
3660 3776 4.775236 AGTCTCTAGTGCATTTTCCATCC 58.225 43.478 0.00 0.00 0.00 3.51
3863 3979 2.271800 GGCGAAAGATGGTCAGTGTAG 58.728 52.381 0.00 0.00 0.00 2.74
3899 4017 5.889853 TGAGATTTTCAGCATCTGCCTATTT 59.110 36.000 0.00 0.00 43.38 1.40
3985 4106 9.107177 CTTGCTAGTTCATCAAGATATCTGTTT 57.893 33.333 5.86 0.00 39.48 2.83
4303 4425 8.186178 AGCAAAGTATGATACTAAACTGAACG 57.814 34.615 5.41 0.00 38.26 3.95
4321 4443 1.078759 CGACAAGAGGCATGACGTCC 61.079 60.000 14.12 0.00 33.49 4.79
4323 4445 1.079819 CAAGAGGCATGACGTCCGT 60.080 57.895 14.12 0.00 33.49 4.69
4359 4481 1.541118 TCAGGGGCAGGGATGAACA 60.541 57.895 0.00 0.00 0.00 3.18
4368 4490 2.167075 GCAGGGATGAACAAATGAAGGG 59.833 50.000 0.00 0.00 0.00 3.95
4462 4584 9.574516 AGTCAAAAGGTATCAACTAGTCAAAAT 57.425 29.630 0.00 0.00 0.00 1.82
4673 4795 2.122783 TTTACCCACACCATAGCAGC 57.877 50.000 0.00 0.00 0.00 5.25
4754 4876 7.759489 TTTTGTTTAACCTGCATATCTCAGT 57.241 32.000 0.00 0.00 0.00 3.41
4965 5087 1.302033 AGCAAACGAGAGCACCAGG 60.302 57.895 0.00 0.00 0.00 4.45
4986 5108 1.618837 AGGCGTGTCATGTTCTACACT 59.381 47.619 12.10 0.00 43.04 3.55
4992 5114 3.551890 GTGTCATGTTCTACACTATGGCG 59.448 47.826 7.88 0.00 42.17 5.69
4998 5120 4.212716 TGTTCTACACTATGGCGGAGTAT 58.787 43.478 0.00 0.00 0.00 2.12
5169 5291 4.929819 TGTAGCTTTTCACCCCTTTTTC 57.070 40.909 0.00 0.00 0.00 2.29
5304 5428 6.485984 CAGAGTCTTCATCATATTGAAAGGGG 59.514 42.308 0.00 0.00 35.31 4.79
5404 5528 3.081710 TCTATCACGTCTTGGTCCAGA 57.918 47.619 0.00 0.00 0.00 3.86
5405 5529 3.632333 TCTATCACGTCTTGGTCCAGAT 58.368 45.455 0.00 0.00 0.00 2.90
5418 5542 0.920763 TCCAGATGCAGGGAATGGGT 60.921 55.000 2.30 0.00 0.00 4.51
5475 5600 1.896755 GCCTCATGGGGGTGTGATTTT 60.897 52.381 15.13 0.00 35.12 1.82
5479 5604 2.632028 TCATGGGGGTGTGATTTTTGTG 59.368 45.455 0.00 0.00 0.00 3.33
5481 5606 2.035632 TGGGGGTGTGATTTTTGTGTC 58.964 47.619 0.00 0.00 0.00 3.67
5482 5607 1.343142 GGGGGTGTGATTTTTGTGTCC 59.657 52.381 0.00 0.00 0.00 4.02
5521 5646 7.457852 AGCTTGGTAATATCATGGATGGTACTA 59.542 37.037 0.00 0.00 0.00 1.82
5529 5654 3.838317 TCATGGATGGTACTAGGTATGGC 59.162 47.826 0.00 0.00 0.00 4.40
5536 5661 3.133362 TGGTACTAGGTATGGCGGAAAAG 59.867 47.826 0.00 0.00 0.00 2.27
5541 5666 3.149005 AGGTATGGCGGAAAAGTTTGA 57.851 42.857 0.00 0.00 0.00 2.69
5601 5726 7.970614 GGTATTTATTGCTCCTCTTTTGTGAAG 59.029 37.037 0.00 0.00 0.00 3.02
5604 5729 1.494721 TGCTCCTCTTTTGTGAAGGGT 59.505 47.619 0.00 0.00 0.00 4.34
5622 5747 3.443681 AGGGTTACACTACATGCAAATGC 59.556 43.478 0.00 0.00 42.50 3.56
5645 5770 2.149578 CTTTGCAAGACAGGAGGACAG 58.850 52.381 0.00 0.00 0.00 3.51
5663 5788 5.475564 AGGACAGTGTTGTTTGTAAAACAGT 59.524 36.000 0.00 1.09 39.87 3.55
5673 5798 7.069852 TGTTTGTAAAACAGTTAACACGCTA 57.930 32.000 8.61 0.00 25.77 4.26
5674 5799 7.524912 TGTTTGTAAAACAGTTAACACGCTAA 58.475 30.769 8.61 0.00 25.77 3.09
5675 5800 8.182881 TGTTTGTAAAACAGTTAACACGCTAAT 58.817 29.630 8.61 0.00 25.77 1.73
5676 5801 8.466026 GTTTGTAAAACAGTTAACACGCTAATG 58.534 33.333 8.61 0.00 0.00 1.90
5698 5933 8.877864 AATGGTTAGAAATCCAATGACAGTAA 57.122 30.769 0.00 0.00 37.27 2.24
5779 6272 5.273944 GCTAAAATCATAACGCCAGAAAGG 58.726 41.667 0.00 0.00 41.84 3.11
5839 6335 1.003331 CTAAACGGCGAAAAGTGTGCA 60.003 47.619 16.62 0.00 0.00 4.57
5878 6374 4.245660 CAGTCACATACATGTTCGGTTCT 58.754 43.478 2.30 0.00 39.39 3.01
6015 6511 9.730705 ACATTCACATTAGAGAAAGAAGATTCA 57.269 29.630 0.00 0.00 0.00 2.57
6091 6587 5.108187 TCATATTGCTTGCTCTTCCTTCT 57.892 39.130 0.00 0.00 0.00 2.85
6133 6629 2.166664 GGGCTGACTACCTACAGAGTTG 59.833 54.545 0.00 0.00 36.38 3.16
6358 6854 2.285834 CGCGTTGGATTTGATCAGTAGC 60.286 50.000 0.00 0.00 0.00 3.58
6370 6866 6.452494 TTGATCAGTAGCAAGTACTACCTC 57.548 41.667 0.00 0.00 42.97 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 8.485392 TGGATGGGGATTTTTGAGAATTATTTC 58.515 33.333 0.00 0.00 0.00 2.17
38 39 8.063630 GTGCAGAAATAAAAGTTGTCCAAATTG 58.936 33.333 0.00 0.00 0.00 2.32
129 136 7.904461 CACTTTTGTTATTGTTTTGCCTTTCAG 59.096 33.333 0.00 0.00 0.00 3.02
147 154 8.671028 ACGTATCTACTTTTCAAACACTTTTGT 58.329 29.630 0.00 0.00 42.51 2.83
150 157 9.498307 CAAACGTATCTACTTTTCAAACACTTT 57.502 29.630 0.00 0.00 0.00 2.66
181 188 4.002982 TGAGTGTTTCTGGTGCATGATAC 58.997 43.478 0.00 0.00 0.00 2.24
190 197 5.680619 TGTCTAAATGTGAGTGTTTCTGGT 58.319 37.500 0.00 0.00 0.00 4.00
191 198 6.808008 ATGTCTAAATGTGAGTGTTTCTGG 57.192 37.500 0.00 0.00 0.00 3.86
215 222 7.540474 TTAATATAGTTGAAGAGCGGGAGAT 57.460 36.000 0.00 0.00 0.00 2.75
251 261 0.793250 GTTGAAGCTCTCGTGGAAGC 59.207 55.000 0.00 0.00 0.00 3.86
264 274 1.529010 TGCACAGGGCTGGTTGAAG 60.529 57.895 0.00 0.00 45.15 3.02
300 310 3.568007 CCCCTTCAACGATGTCAGAAAAA 59.432 43.478 0.00 0.00 0.00 1.94
308 318 4.324267 CTTTAGTTCCCCTTCAACGATGT 58.676 43.478 0.00 0.00 0.00 3.06
315 325 2.175931 TGTTGCCTTTAGTTCCCCTTCA 59.824 45.455 0.00 0.00 0.00 3.02
332 342 3.031013 ACCTTTTCCTTCCACCTTGTTG 58.969 45.455 0.00 0.00 0.00 3.33
337 347 2.993863 ACCATACCTTTTCCTTCCACCT 59.006 45.455 0.00 0.00 0.00 4.00
349 360 1.747206 GCTGAATGGCGACCATACCTT 60.747 52.381 11.07 0.00 44.40 3.50
362 373 2.289820 CGGTGAATCTGATGGCTGAATG 59.710 50.000 0.00 0.00 0.00 2.67
369 380 1.473965 CCCTGTCGGTGAATCTGATGG 60.474 57.143 0.00 0.00 33.66 3.51
386 397 1.681229 TGGCCTACCTTTTCATCCCT 58.319 50.000 3.32 0.00 36.63 4.20
410 421 3.334413 ATGGACATCATGGATGCGG 57.666 52.632 6.15 0.00 43.15 5.69
419 430 1.984424 TGTGTTCCTCCATGGACATCA 59.016 47.619 11.44 5.25 46.14 3.07
477 497 5.849510 TCTGTTTAAGGACGATTTGAGTCA 58.150 37.500 0.00 0.00 40.20 3.41
480 500 6.109359 AGGATCTGTTTAAGGACGATTTGAG 58.891 40.000 0.00 0.00 0.00 3.02
553 573 4.672587 TGGATTATCTCCTTCCTCGTTG 57.327 45.455 0.00 0.00 45.21 4.10
554 574 5.151454 AGATGGATTATCTCCTTCCTCGTT 58.849 41.667 4.13 0.00 45.30 3.85
555 575 4.746466 AGATGGATTATCTCCTTCCTCGT 58.254 43.478 4.13 0.00 45.30 4.18
578 601 4.862092 CTCATCGGCGCTCGCTGT 62.862 66.667 20.62 7.50 46.77 4.40
636 659 1.261238 GCTAGCAGTGGTGGGTCTCT 61.261 60.000 10.63 0.00 0.00 3.10
641 664 2.270205 CTGGCTAGCAGTGGTGGG 59.730 66.667 18.24 0.00 0.00 4.61
675 698 0.687354 GAGAGGTGTGATGTGGGTGT 59.313 55.000 0.00 0.00 0.00 4.16
750 798 2.659610 GGAGTTGCTCGGTGCTCT 59.340 61.111 3.53 2.39 43.37 4.09
763 811 1.231641 CGGAGAGGAGATGGGGAGT 59.768 63.158 0.00 0.00 0.00 3.85
765 813 1.230497 GACGGAGAGGAGATGGGGA 59.770 63.158 0.00 0.00 0.00 4.81
800 862 5.091261 AGAGAATAAAGGAGACGCATTGT 57.909 39.130 0.00 0.00 0.00 2.71
859 921 4.335647 ACTGCGTGGCCTCCTTGG 62.336 66.667 3.32 0.00 39.35 3.61
1090 1159 2.208562 TAGGGCTGGGATTCAGGGGT 62.209 60.000 0.00 0.00 43.54 4.95
1094 1163 0.761802 GGTCTAGGGCTGGGATTCAG 59.238 60.000 0.00 0.00 46.03 3.02
1099 1168 2.365635 GCTGGTCTAGGGCTGGGA 60.366 66.667 0.00 0.00 0.00 4.37
1119 1188 0.390340 TCGCACCAGAATCAGCAGAC 60.390 55.000 0.00 0.00 0.00 3.51
1120 1189 0.108472 CTCGCACCAGAATCAGCAGA 60.108 55.000 0.00 0.00 0.00 4.26
1124 1193 1.016130 AACGCTCGCACCAGAATCAG 61.016 55.000 0.00 0.00 0.00 2.90
1127 1196 2.034879 CCAACGCTCGCACCAGAAT 61.035 57.895 0.00 0.00 0.00 2.40
1188 1257 2.108976 GCCGCTACCAGCAGCATA 59.891 61.111 1.58 0.00 43.77 3.14
1406 1475 1.011595 AGAAGGTAGCCCAGAGGAGA 58.988 55.000 0.00 0.00 33.47 3.71
1592 1666 6.313658 TCACAAAGGTTAATGATCGACATCAG 59.686 38.462 0.00 0.00 42.53 2.90
1782 1870 1.794222 GGCAACTGTATCCACACGC 59.206 57.895 0.00 0.00 0.00 5.34
1856 1944 7.121168 GGATGAATAAAATGTGTTCTCCAGTGA 59.879 37.037 0.00 0.00 0.00 3.41
1899 1987 5.066375 TCCGTTCCAAAATAGATGAATGCAG 59.934 40.000 0.00 0.00 0.00 4.41
1909 1997 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1910 1998 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
1911 1999 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
1913 2001 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
1914 2002 2.176889 CTTCTACTCCCTCCGTTCCAA 58.823 52.381 0.00 0.00 0.00 3.53
1916 2004 1.750206 GACTTCTACTCCCTCCGTTCC 59.250 57.143 0.00 0.00 0.00 3.62
1918 2006 2.599408 TGACTTCTACTCCCTCCGTT 57.401 50.000 0.00 0.00 0.00 4.44
1919 2007 2.599408 TTGACTTCTACTCCCTCCGT 57.401 50.000 0.00 0.00 0.00 4.69
1920 2008 3.024547 TCATTGACTTCTACTCCCTCCG 58.975 50.000 0.00 0.00 0.00 4.63
1921 2009 4.383226 GGTTCATTGACTTCTACTCCCTCC 60.383 50.000 0.00 0.00 0.00 4.30
1922 2010 4.468153 AGGTTCATTGACTTCTACTCCCTC 59.532 45.833 0.00 0.00 0.00 4.30
1923 2011 4.430441 AGGTTCATTGACTTCTACTCCCT 58.570 43.478 0.00 0.00 0.00 4.20
1924 2012 4.828072 AGGTTCATTGACTTCTACTCCC 57.172 45.455 0.00 0.00 0.00 4.30
1925 2013 5.662456 GGTAGGTTCATTGACTTCTACTCC 58.338 45.833 14.51 0.00 0.00 3.85
1926 2014 5.105837 ACGGTAGGTTCATTGACTTCTACTC 60.106 44.000 14.51 8.18 0.00 2.59
1963 2051 9.659830 GTGATTCAAGTAAAGAAAACGTATTGT 57.340 29.630 0.00 0.00 0.00 2.71
1969 2057 9.710979 TTAACTGTGATTCAAGTAAAGAAAACG 57.289 29.630 0.00 0.00 0.00 3.60
2034 2122 7.547370 CCTCTAAACAGTGAAAGATAGTTCAGG 59.453 40.741 0.00 0.00 38.17 3.86
2371 2471 2.172505 TGACAGGAAGCAACTCCTTTGA 59.827 45.455 0.00 0.00 43.76 2.69
2424 2524 7.773224 CCATTTAAACTTTGGGAAGAGGTTTTT 59.227 33.333 0.00 0.00 36.69 1.94
2494 2594 9.988815 TCTCTAGATCTTTTAGACAATAATGGC 57.011 33.333 0.00 0.00 33.34 4.40
2567 2667 6.884295 AGTAATGCACAAACAGGCTTCTAATA 59.116 34.615 0.00 0.00 0.00 0.98
2647 2747 2.878406 CACGTCTGAGTTCCAACCAAAT 59.122 45.455 0.00 0.00 0.00 2.32
2652 2752 6.963049 AAATATACACGTCTGAGTTCCAAC 57.037 37.500 0.00 0.00 0.00 3.77
2716 2816 0.725117 ACGCACAATTAACGCCTAGC 59.275 50.000 0.00 0.00 0.00 3.42
2717 2817 3.465122 AAACGCACAATTAACGCCTAG 57.535 42.857 0.00 0.00 0.00 3.02
2718 2818 3.556513 CAAAACGCACAATTAACGCCTA 58.443 40.909 0.00 0.00 0.00 3.93
2719 2819 2.389998 CAAAACGCACAATTAACGCCT 58.610 42.857 0.00 0.00 0.00 5.52
2720 2820 1.136748 GCAAAACGCACAATTAACGCC 60.137 47.619 0.00 0.00 41.79 5.68
2721 2821 1.136748 GGCAAAACGCACAATTAACGC 60.137 47.619 0.00 0.00 45.17 4.84
2722 2822 2.097637 GTGGCAAAACGCACAATTAACG 60.098 45.455 0.00 0.00 45.17 3.18
2723 2823 2.219903 GGTGGCAAAACGCACAATTAAC 59.780 45.455 0.00 0.00 45.17 2.01
2724 2824 2.474816 GGTGGCAAAACGCACAATTAA 58.525 42.857 0.00 0.00 45.17 1.40
2725 2825 1.600663 CGGTGGCAAAACGCACAATTA 60.601 47.619 0.00 0.00 45.17 1.40
2726 2826 0.873743 CGGTGGCAAAACGCACAATT 60.874 50.000 0.00 0.00 45.17 2.32
2727 2827 1.299773 CGGTGGCAAAACGCACAAT 60.300 52.632 0.00 0.00 45.17 2.71
2728 2828 2.103143 CGGTGGCAAAACGCACAA 59.897 55.556 0.00 0.00 45.17 3.33
2733 2833 2.354539 CAAGGCGGTGGCAAAACG 60.355 61.111 0.00 0.00 42.47 3.60
2734 2834 2.661537 GCAAGGCGGTGGCAAAAC 60.662 61.111 0.00 0.00 42.47 2.43
2745 2845 1.234615 TGGTCAGTAAAGCGCAAGGC 61.235 55.000 11.47 0.00 44.05 4.35
2746 2846 1.234821 TTGGTCAGTAAAGCGCAAGG 58.765 50.000 11.47 0.00 38.28 3.61
2747 2847 2.921126 CTTTGGTCAGTAAAGCGCAAG 58.079 47.619 11.47 0.00 43.44 4.01
2753 2853 2.855180 CATGCGCTTTGGTCAGTAAAG 58.145 47.619 9.73 0.00 38.00 1.85
2754 2854 1.068610 GCATGCGCTTTGGTCAGTAAA 60.069 47.619 9.73 0.00 34.30 2.01
2755 2855 0.521291 GCATGCGCTTTGGTCAGTAA 59.479 50.000 9.73 0.00 34.30 2.24
2756 2856 2.170738 GCATGCGCTTTGGTCAGTA 58.829 52.632 9.73 0.00 34.30 2.74
2757 2857 2.956987 GCATGCGCTTTGGTCAGT 59.043 55.556 9.73 0.00 34.30 3.41
2770 2870 2.313234 GCATAACTGCGCATAAGCATG 58.687 47.619 12.24 11.51 46.97 4.06
2771 2871 2.693797 GCATAACTGCGCATAAGCAT 57.306 45.000 12.24 0.00 46.97 3.79
2782 2882 4.864916 ACGCTTAATCTGTGCATAACTG 57.135 40.909 0.00 0.00 0.00 3.16
2783 2883 5.661458 ACTACGCTTAATCTGTGCATAACT 58.339 37.500 0.00 0.00 0.00 2.24
2784 2884 5.968387 ACTACGCTTAATCTGTGCATAAC 57.032 39.130 0.00 0.00 0.00 1.89
2785 2885 7.307160 GCATAACTACGCTTAATCTGTGCATAA 60.307 37.037 0.00 0.00 0.00 1.90
2786 2886 6.145534 GCATAACTACGCTTAATCTGTGCATA 59.854 38.462 0.00 0.00 0.00 3.14
2787 2887 5.050091 GCATAACTACGCTTAATCTGTGCAT 60.050 40.000 0.00 0.00 0.00 3.96
2788 2888 4.270084 GCATAACTACGCTTAATCTGTGCA 59.730 41.667 0.00 0.00 0.00 4.57
2789 2889 4.606232 CGCATAACTACGCTTAATCTGTGC 60.606 45.833 0.00 0.00 0.00 4.57
2790 2890 4.994734 CGCATAACTACGCTTAATCTGTG 58.005 43.478 0.00 0.00 0.00 3.66
2818 2918 0.165944 CTCTAGGCGTTGGCAAAACG 59.834 55.000 16.88 16.88 45.56 3.60
2819 2919 0.109735 GCTCTAGGCGTTGGCAAAAC 60.110 55.000 0.00 0.00 42.47 2.43
2820 2920 1.241315 GGCTCTAGGCGTTGGCAAAA 61.241 55.000 0.00 0.00 42.47 2.44
2821 2921 1.674322 GGCTCTAGGCGTTGGCAAA 60.674 57.895 0.00 0.00 42.47 3.68
2822 2922 1.261938 TAGGCTCTAGGCGTTGGCAA 61.262 55.000 0.00 0.00 46.23 4.52
2823 2923 1.676678 CTAGGCTCTAGGCGTTGGCA 61.677 60.000 0.00 0.00 46.23 4.92
2824 2924 1.068250 CTAGGCTCTAGGCGTTGGC 59.932 63.158 0.00 0.00 46.23 4.52
2825 2925 1.742768 CCTAGGCTCTAGGCGTTGG 59.257 63.158 13.35 10.22 46.23 3.77
2831 2931 4.350441 GCGCGCCTAGGCTCTAGG 62.350 72.222 30.55 16.12 39.32 3.02
2832 2932 1.516365 TAAGCGCGCCTAGGCTCTAG 61.516 60.000 30.55 18.84 38.88 2.43
2833 2933 1.105167 TTAAGCGCGCCTAGGCTCTA 61.105 55.000 30.55 9.53 38.88 2.43
2834 2934 2.356818 CTTAAGCGCGCCTAGGCTCT 62.357 60.000 30.55 20.68 38.88 4.09
2835 2935 1.951631 CTTAAGCGCGCCTAGGCTC 60.952 63.158 30.55 22.76 38.88 4.70
2836 2936 2.107141 CTTAAGCGCGCCTAGGCT 59.893 61.111 30.55 14.71 42.33 4.58
2837 2937 3.640992 GCTTAAGCGCGCCTAGGC 61.641 66.667 30.33 27.28 37.85 3.93
2859 2959 0.099791 TAAAAATGGCGCGCCTAAGC 59.900 50.000 45.79 23.70 36.94 3.09
2860 2960 2.159435 AGTTAAAAATGGCGCGCCTAAG 60.159 45.455 45.79 0.00 36.94 2.18
2861 2961 1.813786 AGTTAAAAATGGCGCGCCTAA 59.186 42.857 45.79 32.75 36.94 2.69
2862 2962 1.455248 AGTTAAAAATGGCGCGCCTA 58.545 45.000 45.79 33.27 36.94 3.93
2863 2963 1.455248 TAGTTAAAAATGGCGCGCCT 58.545 45.000 45.79 30.43 36.94 5.52
2864 2964 2.116366 CATAGTTAAAAATGGCGCGCC 58.884 47.619 42.35 42.35 0.00 6.53
2865 2965 2.116366 CCATAGTTAAAAATGGCGCGC 58.884 47.619 25.94 25.94 36.50 6.86
2866 2966 3.548014 CCTCCATAGTTAAAAATGGCGCG 60.548 47.826 0.00 0.00 42.08 6.86
2867 2967 3.630312 TCCTCCATAGTTAAAAATGGCGC 59.370 43.478 0.00 0.00 42.08 6.53
2868 2968 7.504924 TTATCCTCCATAGTTAAAAATGGCG 57.495 36.000 11.02 6.45 42.08 5.69
2869 2969 7.814587 GCATTATCCTCCATAGTTAAAAATGGC 59.185 37.037 11.02 0.00 42.08 4.40
2870 2970 9.082313 AGCATTATCCTCCATAGTTAAAAATGG 57.918 33.333 9.98 9.98 43.44 3.16
2871 2971 9.903682 CAGCATTATCCTCCATAGTTAAAAATG 57.096 33.333 0.00 0.00 0.00 2.32
2872 2972 9.866655 TCAGCATTATCCTCCATAGTTAAAAAT 57.133 29.630 0.00 0.00 0.00 1.82
2873 2973 9.693739 TTCAGCATTATCCTCCATAGTTAAAAA 57.306 29.630 0.00 0.00 0.00 1.94
2874 2974 9.866655 ATTCAGCATTATCCTCCATAGTTAAAA 57.133 29.630 0.00 0.00 0.00 1.52
2875 2975 9.288576 CATTCAGCATTATCCTCCATAGTTAAA 57.711 33.333 0.00 0.00 0.00 1.52
2876 2976 8.659527 TCATTCAGCATTATCCTCCATAGTTAA 58.340 33.333 0.00 0.00 0.00 2.01
2877 2977 8.206126 TCATTCAGCATTATCCTCCATAGTTA 57.794 34.615 0.00 0.00 0.00 2.24
2878 2978 7.083062 TCATTCAGCATTATCCTCCATAGTT 57.917 36.000 0.00 0.00 0.00 2.24
2879 2979 6.692849 TCATTCAGCATTATCCTCCATAGT 57.307 37.500 0.00 0.00 0.00 2.12
2880 2980 8.459635 CAATTCATTCAGCATTATCCTCCATAG 58.540 37.037 0.00 0.00 0.00 2.23
2881 2981 7.395206 CCAATTCATTCAGCATTATCCTCCATA 59.605 37.037 0.00 0.00 0.00 2.74
2882 2982 6.210784 CCAATTCATTCAGCATTATCCTCCAT 59.789 38.462 0.00 0.00 0.00 3.41
2883 2983 5.537295 CCAATTCATTCAGCATTATCCTCCA 59.463 40.000 0.00 0.00 0.00 3.86
2884 2984 5.537674 ACCAATTCATTCAGCATTATCCTCC 59.462 40.000 0.00 0.00 0.00 4.30
2885 2985 6.489361 AGACCAATTCATTCAGCATTATCCTC 59.511 38.462 0.00 0.00 0.00 3.71
2886 2986 6.371278 AGACCAATTCATTCAGCATTATCCT 58.629 36.000 0.00 0.00 0.00 3.24
2887 2987 6.645790 AGACCAATTCATTCAGCATTATCC 57.354 37.500 0.00 0.00 0.00 2.59
2888 2988 6.420008 GCAAGACCAATTCATTCAGCATTATC 59.580 38.462 0.00 0.00 0.00 1.75
2889 2989 6.127281 TGCAAGACCAATTCATTCAGCATTAT 60.127 34.615 0.00 0.00 0.00 1.28
2890 2990 5.185442 TGCAAGACCAATTCATTCAGCATTA 59.815 36.000 0.00 0.00 0.00 1.90
2891 2991 4.020928 TGCAAGACCAATTCATTCAGCATT 60.021 37.500 0.00 0.00 0.00 3.56
2946 3046 1.129811 ACGCACAATTAAGCCTAACGC 59.870 47.619 0.00 0.00 37.98 4.84
2947 3047 3.465122 AACGCACAATTAAGCCTAACG 57.535 42.857 0.00 0.00 0.00 3.18
2948 3048 4.143410 GCAAAACGCACAATTAAGCCTAAC 60.143 41.667 0.00 0.00 41.79 2.34
2949 3049 3.984633 GCAAAACGCACAATTAAGCCTAA 59.015 39.130 0.00 0.00 41.79 2.69
2950 3050 3.570559 GCAAAACGCACAATTAAGCCTA 58.429 40.909 0.00 0.00 41.79 3.93
2951 3051 2.403259 GCAAAACGCACAATTAAGCCT 58.597 42.857 0.00 0.00 41.79 4.58
2952 3052 1.459209 GGCAAAACGCACAATTAAGCC 59.541 47.619 0.00 0.00 45.17 4.35
2953 3053 2.096958 GTGGCAAAACGCACAATTAAGC 60.097 45.455 0.00 0.00 45.17 3.09
2954 3054 2.474735 GGTGGCAAAACGCACAATTAAG 59.525 45.455 0.00 0.00 45.17 1.85
2955 3055 2.474816 GGTGGCAAAACGCACAATTAA 58.525 42.857 0.00 0.00 45.17 1.40
2956 3056 1.600663 CGGTGGCAAAACGCACAATTA 60.601 47.619 0.00 0.00 45.17 1.40
2957 3057 0.873743 CGGTGGCAAAACGCACAATT 60.874 50.000 0.00 0.00 45.17 2.32
2958 3058 1.299773 CGGTGGCAAAACGCACAAT 60.300 52.632 0.00 0.00 45.17 2.71
2959 3059 2.103143 CGGTGGCAAAACGCACAA 59.897 55.556 0.00 0.00 45.17 3.33
2964 3064 2.354539 CAAGGCGGTGGCAAAACG 60.355 61.111 0.00 0.00 42.47 3.60
2965 3065 2.661537 GCAAGGCGGTGGCAAAAC 60.662 61.111 0.00 0.00 42.47 2.43
2976 3076 1.234615 TGGTCAGTAAAGCGCAAGGC 61.235 55.000 11.47 0.00 44.05 4.35
2977 3077 1.234821 TTGGTCAGTAAAGCGCAAGG 58.765 50.000 11.47 0.00 38.28 3.61
2978 3078 2.921126 CTTTGGTCAGTAAAGCGCAAG 58.079 47.619 11.47 0.00 43.44 4.01
2984 3084 2.855180 CATGCGCTTTGGTCAGTAAAG 58.145 47.619 9.73 0.00 38.00 1.85
2985 3085 1.068610 GCATGCGCTTTGGTCAGTAAA 60.069 47.619 9.73 0.00 34.30 2.01
2986 3086 0.521291 GCATGCGCTTTGGTCAGTAA 59.479 50.000 9.73 0.00 34.30 2.24
2987 3087 2.170738 GCATGCGCTTTGGTCAGTA 58.829 52.632 9.73 0.00 34.30 2.74
2988 3088 2.956987 GCATGCGCTTTGGTCAGT 59.043 55.556 9.73 0.00 34.30 3.41
3001 3101 2.009229 CGTAACTGCGCATAAGCATG 57.991 50.000 12.24 0.00 46.97 4.06
3011 3111 2.534939 GCTTAATCTGTGCGTAACTGCG 60.535 50.000 0.00 0.00 37.81 5.18
3012 3112 2.415168 TGCTTAATCTGTGCGTAACTGC 59.585 45.455 0.00 0.00 0.00 4.40
3013 3113 4.864916 ATGCTTAATCTGTGCGTAACTG 57.135 40.909 0.00 0.00 0.00 3.16
3014 3114 5.661458 ACTATGCTTAATCTGTGCGTAACT 58.339 37.500 0.00 0.00 0.00 2.24
3015 3115 5.968387 ACTATGCTTAATCTGTGCGTAAC 57.032 39.130 0.00 0.00 0.00 2.50
3016 3116 8.072238 CATAACTATGCTTAATCTGTGCGTAA 57.928 34.615 0.00 0.00 0.00 3.18
3017 3117 7.637709 CATAACTATGCTTAATCTGTGCGTA 57.362 36.000 0.00 0.00 0.00 4.42
3018 3118 6.530913 CATAACTATGCTTAATCTGTGCGT 57.469 37.500 0.00 0.00 0.00 5.24
3044 3144 0.166379 GGCATTGGCAAAACGCATTG 59.834 50.000 17.69 6.25 45.17 2.82
3045 3145 0.035176 AGGCATTGGCAAAACGCATT 59.965 45.000 13.20 6.19 45.17 3.56
3046 3146 0.894141 TAGGCATTGGCAAAACGCAT 59.106 45.000 13.20 14.33 45.17 4.73
3047 3147 0.243365 CTAGGCATTGGCAAAACGCA 59.757 50.000 13.20 2.13 45.17 5.24
3048 3148 0.525761 TCTAGGCATTGGCAAAACGC 59.474 50.000 13.20 7.57 43.71 4.84
3049 3149 1.468054 GCTCTAGGCATTGGCAAAACG 60.468 52.381 13.20 0.00 43.71 3.60
3050 3150 1.134995 GGCTCTAGGCATTGGCAAAAC 60.135 52.381 13.20 0.00 43.71 2.43
3051 3151 1.185315 GGCTCTAGGCATTGGCAAAA 58.815 50.000 13.20 0.00 43.71 2.44
3052 3152 0.332632 AGGCTCTAGGCATTGGCAAA 59.667 50.000 13.20 0.00 43.71 3.68
3053 3153 1.141657 CTAGGCTCTAGGCATTGGCAA 59.858 52.381 13.20 0.68 43.71 4.52
3054 3154 0.761187 CTAGGCTCTAGGCATTGGCA 59.239 55.000 13.20 0.00 43.71 4.92
3055 3155 0.036022 CCTAGGCTCTAGGCATTGGC 59.964 60.000 13.35 1.17 40.17 4.52
3062 3162 1.395826 AAGCACGCCTAGGCTCTAGG 61.396 60.000 30.55 17.32 40.01 3.02
3063 3163 1.319541 TAAGCACGCCTAGGCTCTAG 58.680 55.000 30.55 17.70 40.01 2.43
3064 3164 1.681793 CTTAAGCACGCCTAGGCTCTA 59.318 52.381 30.55 11.80 40.01 2.43
3065 3165 0.461961 CTTAAGCACGCCTAGGCTCT 59.538 55.000 30.55 20.68 40.01 4.09
3066 3166 1.154814 GCTTAAGCACGCCTAGGCTC 61.155 60.000 30.55 18.86 40.01 4.70
3067 3167 1.153349 GCTTAAGCACGCCTAGGCT 60.153 57.895 30.55 14.71 43.46 4.58
3068 3168 2.526120 CGCTTAAGCACGCCTAGGC 61.526 63.158 24.75 24.75 42.21 3.93
3069 3169 3.706140 CGCTTAAGCACGCCTAGG 58.294 61.111 26.29 3.67 42.21 3.02
3104 3204 5.298777 TGCCTACGCTAACCAAAGTTAAAAA 59.701 36.000 0.00 0.00 37.99 1.94
3105 3205 4.820716 TGCCTACGCTAACCAAAGTTAAAA 59.179 37.500 0.00 0.00 37.99 1.52
3106 3206 4.387598 TGCCTACGCTAACCAAAGTTAAA 58.612 39.130 0.00 0.00 37.99 1.52
3107 3207 4.005487 TGCCTACGCTAACCAAAGTTAA 57.995 40.909 0.00 0.00 37.99 2.01
3108 3208 3.681593 TGCCTACGCTAACCAAAGTTA 57.318 42.857 0.00 0.00 37.42 2.24
3109 3209 2.554370 TGCCTACGCTAACCAAAGTT 57.446 45.000 0.00 0.00 40.15 2.66
3110 3210 2.781681 ATGCCTACGCTAACCAAAGT 57.218 45.000 0.00 0.00 35.36 2.66
3111 3211 4.165779 CAAAATGCCTACGCTAACCAAAG 58.834 43.478 0.00 0.00 35.36 2.77
3112 3212 3.570550 ACAAAATGCCTACGCTAACCAAA 59.429 39.130 0.00 0.00 35.36 3.28
3113 3213 3.150767 ACAAAATGCCTACGCTAACCAA 58.849 40.909 0.00 0.00 35.36 3.67
3114 3214 2.785562 ACAAAATGCCTACGCTAACCA 58.214 42.857 0.00 0.00 35.36 3.67
3115 3215 4.186159 TCTACAAAATGCCTACGCTAACC 58.814 43.478 0.00 0.00 35.36 2.85
3116 3216 5.522460 TCATCTACAAAATGCCTACGCTAAC 59.478 40.000 0.00 0.00 35.36 2.34
3117 3217 5.666462 TCATCTACAAAATGCCTACGCTAA 58.334 37.500 0.00 0.00 35.36 3.09
3118 3218 5.270893 TCATCTACAAAATGCCTACGCTA 57.729 39.130 0.00 0.00 35.36 4.26
3119 3219 4.137116 TCATCTACAAAATGCCTACGCT 57.863 40.909 0.00 0.00 35.36 5.07
3120 3220 5.007626 TCAATCATCTACAAAATGCCTACGC 59.992 40.000 0.00 0.00 0.00 4.42
3183 3283 5.658468 GCTCATATGCTGATGCTAGTATCA 58.342 41.667 20.55 20.55 40.48 2.15
3205 3305 0.874390 TGGAGTGAAGTCAATTGCGC 59.126 50.000 0.00 0.00 0.00 6.09
3207 3307 2.157738 AGCTGGAGTGAAGTCAATTGC 58.842 47.619 0.00 0.00 0.00 3.56
3252 3353 5.675684 AACAAACCACCATTTTTCTCAGT 57.324 34.783 0.00 0.00 0.00 3.41
3304 3405 3.855689 ACAGCATTGTTGGTCATAAGC 57.144 42.857 5.46 0.00 32.28 3.09
3352 3453 7.933215 TCACAGTAGCAATACACTAAGTAGA 57.067 36.000 0.00 0.00 35.85 2.59
3367 3468 6.072452 AGCCAAAGTAAGAAAATCACAGTAGC 60.072 38.462 0.00 0.00 0.00 3.58
3465 3575 1.760405 ATGAAGGAAAGGGGAGTGGT 58.240 50.000 0.00 0.00 0.00 4.16
3604 3720 5.181245 AGTTGATGGATTGTTAAGTGAACGG 59.819 40.000 0.00 0.00 41.35 4.44
3643 3759 5.240183 CCTACATGGATGGAAAATGCACTAG 59.760 44.000 0.00 0.00 38.35 2.57
3660 3776 4.253685 CACCTGGTGAAGTTACCTACATG 58.746 47.826 22.33 0.00 41.43 3.21
3863 3979 4.389374 TGAAAATCTCAAGGGACAGTCAC 58.611 43.478 2.17 0.00 0.00 3.67
3913 4034 4.668576 ACTGATTGTTGCTCAATACACG 57.331 40.909 7.46 0.00 45.49 4.49
4177 4298 5.574188 ACAAGAAGGCCAAAATCACTAGAT 58.426 37.500 5.01 0.00 35.53 1.98
4178 4299 4.985538 ACAAGAAGGCCAAAATCACTAGA 58.014 39.130 5.01 0.00 0.00 2.43
4179 4300 6.183360 CCATACAAGAAGGCCAAAATCACTAG 60.183 42.308 5.01 0.00 0.00 2.57
4281 4403 9.701098 TTGTCGTTCAGTTTAGTATCATACTTT 57.299 29.630 1.69 0.00 40.14 2.66
4303 4425 1.078759 CGGACGTCATGCCTCTTGTC 61.079 60.000 18.91 0.00 0.00 3.18
4321 4443 1.517694 GCATGGCTGCCATCAAACG 60.518 57.895 30.49 19.67 43.15 3.60
4344 4466 0.826062 CATTTGTTCATCCCTGCCCC 59.174 55.000 0.00 0.00 0.00 5.80
4368 4490 9.478768 GTCTACTGCCTCTATAAAAATAAGTCC 57.521 37.037 0.00 0.00 0.00 3.85
4462 4584 7.119262 GCTAGCTTTAGGAATTTAGTTGACACA 59.881 37.037 7.70 0.00 0.00 3.72
4673 4795 5.356882 AGTATTCACCATTGAACAACACG 57.643 39.130 0.00 0.00 44.66 4.49
4776 4898 5.050490 CGGTATCTAATTTGACTCTGGTGG 58.950 45.833 0.00 0.00 0.00 4.61
4834 4956 0.535780 CAGTGTCCTTGGCAGCTTGA 60.536 55.000 0.00 0.00 0.00 3.02
4920 5042 0.171007 GTTGGCCATGAACATCACCG 59.829 55.000 6.09 0.00 0.00 4.94
4965 5087 1.993370 GTGTAGAACATGACACGCCTC 59.007 52.381 0.00 0.00 36.88 4.70
4986 5108 1.754380 AAGCCGCATACTCCGCCATA 61.754 55.000 0.00 0.00 0.00 2.74
4992 5114 0.947244 CCATGAAAGCCGCATACTCC 59.053 55.000 0.00 0.00 0.00 3.85
5139 5261 5.066505 GGGGTGAAAAGCTACAATATGACAG 59.933 44.000 0.00 0.00 0.00 3.51
5404 5528 2.681422 CCATTAACCCATTCCCTGCAT 58.319 47.619 0.00 0.00 0.00 3.96
5405 5529 1.964344 GCCATTAACCCATTCCCTGCA 60.964 52.381 0.00 0.00 0.00 4.41
5418 5542 3.995705 GCAGTTTCATTGCAAGCCATTAA 59.004 39.130 4.94 0.00 41.17 1.40
5475 5600 0.109532 TTTCGGCATCCTGGACACAA 59.890 50.000 0.00 0.00 0.00 3.33
5479 5604 0.678048 AGCTTTTCGGCATCCTGGAC 60.678 55.000 0.00 0.00 34.17 4.02
5481 5606 0.171903 CAAGCTTTTCGGCATCCTGG 59.828 55.000 0.00 0.00 34.17 4.45
5482 5607 0.171903 CCAAGCTTTTCGGCATCCTG 59.828 55.000 0.00 0.00 34.17 3.86
5521 5646 3.149005 TCAAACTTTTCCGCCATACCT 57.851 42.857 0.00 0.00 0.00 3.08
5536 5661 8.395633 ACACTGTAAACAGAGTTTACATCAAAC 58.604 33.333 26.31 8.54 43.51 2.93
5541 5666 8.500753 TTTGACACTGTAAACAGAGTTTACAT 57.499 30.769 26.31 16.85 45.42 2.29
5601 5726 3.769536 GCATTTGCATGTAGTGTAACCC 58.230 45.455 0.00 0.00 41.59 4.11
5622 5747 2.291741 GTCCTCCTGTCTTGCAAAGTTG 59.708 50.000 0.00 0.00 46.34 3.16
5638 5763 5.945155 TGTTTTACAAACAACACTGTCCTC 58.055 37.500 0.00 0.00 33.45 3.71
5645 5770 7.430846 CGTGTTAACTGTTTTACAAACAACAC 58.569 34.615 17.43 17.43 38.31 3.32
5663 5788 6.879993 TGGATTTCTAACCATTAGCGTGTTAA 59.120 34.615 0.00 0.00 33.23 2.01
5673 5798 8.739972 GTTACTGTCATTGGATTTCTAACCATT 58.260 33.333 0.00 0.00 36.02 3.16
5674 5799 7.888021 TGTTACTGTCATTGGATTTCTAACCAT 59.112 33.333 0.00 0.00 36.02 3.55
5675 5800 7.227873 TGTTACTGTCATTGGATTTCTAACCA 58.772 34.615 0.00 0.00 0.00 3.67
5676 5801 7.681939 TGTTACTGTCATTGGATTTCTAACC 57.318 36.000 0.00 0.00 0.00 2.85
5698 5933 6.478512 AACAAATGGGTTCACAATACTTGT 57.521 33.333 0.00 0.00 46.75 3.16
5801 6296 2.455674 AGTTTGCTAGACATGCGTCA 57.544 45.000 0.00 0.00 45.23 4.35
5839 6335 4.013728 TGACTGCTACAACTTTGTGGTTT 58.986 39.130 4.82 0.00 42.31 3.27
5850 6346 4.625311 CGAACATGTATGTGACTGCTACAA 59.375 41.667 0.00 0.00 41.61 2.41
5886 6382 6.020971 TGTAAATCTTCGTCTTCAGCTACA 57.979 37.500 0.00 0.00 0.00 2.74
5947 6443 9.862371 CTACTGTACTGAAGATTGTGAAGTATT 57.138 33.333 6.77 0.00 0.00 1.89
5948 6444 9.244292 TCTACTGTACTGAAGATTGTGAAGTAT 57.756 33.333 6.77 0.00 0.00 2.12
5949 6445 8.512956 GTCTACTGTACTGAAGATTGTGAAGTA 58.487 37.037 6.77 0.00 0.00 2.24
5950 6446 7.371936 GTCTACTGTACTGAAGATTGTGAAGT 58.628 38.462 6.77 0.00 0.00 3.01
5951 6447 6.809196 GGTCTACTGTACTGAAGATTGTGAAG 59.191 42.308 6.77 0.00 0.00 3.02
5970 6466 7.116519 GTGAATGTACTGAAGAAACAGGTCTAC 59.883 40.741 0.00 0.00 41.59 2.59
6015 6511 0.032813 CCACATCCAAAGCCAGGGAT 60.033 55.000 0.00 0.00 44.65 3.85
6091 6587 2.357050 CCCAATGGCCAAGAGTGTGATA 60.357 50.000 10.96 0.00 0.00 2.15
6133 6629 4.329462 TGTTTTGCCTGGTTATTGTTCC 57.671 40.909 0.00 0.00 0.00 3.62
6152 6648 9.028284 AGTCAAATGAAATTACATCCTCATTGT 57.972 29.630 2.39 0.00 38.27 2.71
6358 6854 1.867363 AGGGGCAGAGGTAGTACTTG 58.133 55.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.