Multiple sequence alignment - TraesCS5B01G388000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G388000 chr5B 100.000 4965 0 0 1 4965 567017263 567022227 0.000000e+00 9169.0
1 TraesCS5B01G388000 chr5B 93.143 175 12 0 540 714 666300981 666300807 1.770000e-64 257.0
2 TraesCS5B01G388000 chr5B 90.674 193 15 3 531 721 589201025 589201216 2.290000e-63 254.0
3 TraesCS5B01G388000 chr5B 95.833 144 5 1 4353 4496 360936601 360936459 1.070000e-56 231.0
4 TraesCS5B01G388000 chr5A 94.000 3100 130 32 811 3890 581137209 581140272 0.000000e+00 4643.0
5 TraesCS5B01G388000 chr5A 84.679 483 56 14 4496 4965 581140716 581141193 2.710000e-127 466.0
6 TraesCS5B01G388000 chr5A 82.984 382 38 17 3926 4297 581140275 581140639 2.230000e-83 320.0
7 TraesCS5B01G388000 chr5A 91.667 72 4 2 4798 4867 581141054 581141125 1.140000e-16 99.0
8 TraesCS5B01G388000 chr5A 79.832 119 17 6 4214 4327 683599045 683598929 4.120000e-11 80.5
9 TraesCS5B01G388000 chr5A 78.632 117 22 3 4214 4327 681942824 681942940 1.920000e-09 75.0
10 TraesCS5B01G388000 chr5D 93.002 3215 150 31 828 4009 460944530 460941358 0.000000e+00 4621.0
11 TraesCS5B01G388000 chr5D 88.214 280 29 4 79 355 460946541 460946263 1.030000e-86 331.0
12 TraesCS5B01G388000 chr7D 79.753 405 73 6 3225 3624 531084285 531083885 8.130000e-73 285.0
13 TraesCS5B01G388000 chr7A 79.753 405 73 6 3225 3624 611496744 611496344 8.130000e-73 285.0
14 TraesCS5B01G388000 chr7B 79.750 400 73 5 3225 3620 571576060 571575665 2.930000e-72 283.0
15 TraesCS5B01G388000 chr7B 90.860 186 16 1 540 725 662001627 662001443 1.070000e-61 248.0
16 TraesCS5B01G388000 chr2D 91.667 192 16 0 530 721 590722928 590723119 2.950000e-67 267.0
17 TraesCS5B01G388000 chr3D 93.220 177 11 1 540 715 115987590 115987414 4.930000e-65 259.0
18 TraesCS5B01G388000 chr1B 91.534 189 15 1 537 725 367428876 367429063 4.930000e-65 259.0
19 TraesCS5B01G388000 chr1B 89.691 194 19 1 531 724 538865231 538865423 3.840000e-61 246.0
20 TraesCS5B01G388000 chr1B 97.826 138 3 0 4359 4496 657167650 657167787 6.420000e-59 239.0
21 TraesCS5B01G388000 chr1B 95.205 146 7 0 4351 4496 1847331 1847476 1.070000e-56 231.0
22 TraesCS5B01G388000 chr2B 90.256 195 17 2 532 725 758149306 758149499 2.290000e-63 254.0
23 TraesCS5B01G388000 chr2B 96.429 140 5 0 4357 4496 548773756 548773617 1.070000e-56 231.0
24 TraesCS5B01G388000 chr4A 88.945 199 21 1 517 715 703715461 703715658 1.380000e-60 244.0
25 TraesCS5B01G388000 chr4A 84.127 63 7 3 4018 4078 562181932 562181993 1.930000e-04 58.4
26 TraesCS5B01G388000 chrUn 97.842 139 3 0 4358 4496 52138902 52139040 1.790000e-59 241.0
27 TraesCS5B01G388000 chr2A 97.143 140 4 0 4357 4496 768200846 768200707 2.310000e-58 237.0
28 TraesCS5B01G388000 chr6B 95.238 147 7 0 4350 4496 561645364 561645218 2.990000e-57 233.0
29 TraesCS5B01G388000 chr6B 95.833 144 5 1 4354 4496 413647562 413647419 1.070000e-56 231.0
30 TraesCS5B01G388000 chr4B 96.429 140 5 0 4357 4496 568662296 568662157 1.070000e-56 231.0
31 TraesCS5B01G388000 chr4B 92.500 40 3 0 4018 4057 56556302 56556341 1.930000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G388000 chr5B 567017263 567022227 4964 False 9169 9169 100.0000 1 4965 1 chr5B.!!$F1 4964
1 TraesCS5B01G388000 chr5A 581137209 581141193 3984 False 1382 4643 88.3325 811 4965 4 chr5A.!!$F2 4154
2 TraesCS5B01G388000 chr5D 460941358 460946541 5183 True 2476 4621 90.6080 79 4009 2 chr5D.!!$R1 3930

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
807 2143 0.036164 TTGAGTTCCCGGTGGACATG 59.964 55.0 0.0 0.0 41.57 3.21 F
2102 3472 0.236449 GACGGTACAAAAACTGGCCG 59.764 55.0 0.0 0.0 46.57 6.13 F
2654 4043 1.108776 TATGTGTACGTCCTCTGGGC 58.891 55.0 0.0 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2651 4040 0.248843 TGAAATTTCAATGCCGGCCC 59.751 50.0 26.77 0.0 33.55 5.80 R
2954 4344 0.033504 ACTTCATCGGTCAAGCACGT 59.966 50.0 0.00 0.0 0.00 4.49 R
4467 5889 0.035630 GTTGACTGGGCAGCTGAGAT 60.036 55.0 20.43 0.0 0.00 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.436577 GGACGGAGGGAGTATATCTCA 57.563 52.381 0.00 0.00 44.40 3.27
21 22 3.083293 GGACGGAGGGAGTATATCTCAC 58.917 54.545 0.00 0.00 46.26 3.51
40 41 2.555199 ACTTATTGTGAGATCAGCGCC 58.445 47.619 2.29 0.00 0.00 6.53
41 42 1.869767 CTTATTGTGAGATCAGCGCCC 59.130 52.381 2.29 0.00 0.00 6.13
42 43 0.829990 TATTGTGAGATCAGCGCCCA 59.170 50.000 2.29 0.00 0.00 5.36
43 44 0.745845 ATTGTGAGATCAGCGCCCAC 60.746 55.000 2.29 3.76 0.00 4.61
44 45 1.830587 TTGTGAGATCAGCGCCCACT 61.831 55.000 2.29 0.00 0.00 4.00
45 46 1.520342 GTGAGATCAGCGCCCACTC 60.520 63.158 2.29 9.12 0.00 3.51
46 47 2.279120 GAGATCAGCGCCCACTCG 60.279 66.667 2.29 0.00 0.00 4.18
54 55 4.379243 CGCCCACTCGCCTCAGTT 62.379 66.667 0.00 0.00 0.00 3.16
55 56 2.978824 GCCCACTCGCCTCAGTTA 59.021 61.111 0.00 0.00 0.00 2.24
56 57 1.153549 GCCCACTCGCCTCAGTTAG 60.154 63.158 0.00 0.00 0.00 2.34
57 58 1.605058 GCCCACTCGCCTCAGTTAGA 61.605 60.000 0.00 0.00 0.00 2.10
58 59 0.173708 CCCACTCGCCTCAGTTAGAC 59.826 60.000 0.00 0.00 0.00 2.59
59 60 0.888619 CCACTCGCCTCAGTTAGACA 59.111 55.000 0.00 0.00 0.00 3.41
60 61 1.478510 CCACTCGCCTCAGTTAGACAT 59.521 52.381 0.00 0.00 0.00 3.06
61 62 2.534298 CACTCGCCTCAGTTAGACATG 58.466 52.381 0.00 0.00 0.00 3.21
62 63 1.478510 ACTCGCCTCAGTTAGACATGG 59.521 52.381 0.00 0.00 0.00 3.66
63 64 0.824109 TCGCCTCAGTTAGACATGGG 59.176 55.000 0.00 0.00 0.00 4.00
64 65 0.179073 CGCCTCAGTTAGACATGGGG 60.179 60.000 0.00 0.00 40.30 4.96
65 66 0.912486 GCCTCAGTTAGACATGGGGT 59.088 55.000 0.00 0.00 39.44 4.95
66 67 1.282157 GCCTCAGTTAGACATGGGGTT 59.718 52.381 0.00 0.00 39.44 4.11
67 68 2.941415 GCCTCAGTTAGACATGGGGTTG 60.941 54.545 0.00 0.00 39.44 3.77
68 69 2.356125 CCTCAGTTAGACATGGGGTTGG 60.356 54.545 0.00 0.00 31.95 3.77
69 70 1.004277 TCAGTTAGACATGGGGTTGGC 59.996 52.381 0.00 0.00 0.00 4.52
70 71 0.331616 AGTTAGACATGGGGTTGGCC 59.668 55.000 0.00 0.00 0.00 5.36
71 72 0.039035 GTTAGACATGGGGTTGGCCA 59.961 55.000 0.00 0.00 36.17 5.36
72 73 0.331278 TTAGACATGGGGTTGGCCAG 59.669 55.000 5.11 0.00 36.17 4.85
73 74 2.210144 TAGACATGGGGTTGGCCAGC 62.210 60.000 11.82 11.82 36.17 4.85
74 75 3.590466 GACATGGGGTTGGCCAGCT 62.590 63.158 19.84 0.00 36.17 4.24
75 76 2.757099 CATGGGGTTGGCCAGCTC 60.757 66.667 19.84 16.12 36.17 4.09
76 77 3.267233 ATGGGGTTGGCCAGCTCA 61.267 61.111 22.18 18.28 37.92 4.26
77 78 3.292481 ATGGGGTTGGCCAGCTCAG 62.292 63.158 22.18 0.00 36.59 3.35
93 94 0.956902 TCAGTAGCGTGTACCGAGCA 60.957 55.000 7.77 0.00 39.56 4.26
106 107 2.282180 GAGCAAGGCGGTTCCCAA 60.282 61.111 0.00 0.00 34.51 4.12
134 135 3.091545 TCTCAGTTGGCCCAATGATTTC 58.908 45.455 7.49 0.00 0.00 2.17
139 140 3.647590 AGTTGGCCCAATGATTTCTGTTT 59.352 39.130 0.00 0.00 0.00 2.83
140 141 4.102996 AGTTGGCCCAATGATTTCTGTTTT 59.897 37.500 0.00 0.00 0.00 2.43
178 179 1.273886 TCTAATTTGGTTTTGCGGCCC 59.726 47.619 0.00 0.00 0.00 5.80
179 180 1.001406 CTAATTTGGTTTTGCGGCCCA 59.999 47.619 0.00 0.00 0.00 5.36
189 190 3.971245 TTTGCGGCCCATTTATTCTTT 57.029 38.095 0.00 0.00 0.00 2.52
198 199 5.281727 GCCCATTTATTCTTTCGTTCCATC 58.718 41.667 0.00 0.00 0.00 3.51
200 201 6.405842 GCCCATTTATTCTTTCGTTCCATCTT 60.406 38.462 0.00 0.00 0.00 2.40
202 203 8.034804 CCCATTTATTCTTTCGTTCCATCTTTT 58.965 33.333 0.00 0.00 0.00 2.27
233 234 7.049754 AGTTACTTTTCGACTTGGTTTCCTTA 58.950 34.615 0.00 0.00 0.00 2.69
234 235 7.718314 AGTTACTTTTCGACTTGGTTTCCTTAT 59.282 33.333 0.00 0.00 0.00 1.73
237 238 7.423199 ACTTTTCGACTTGGTTTCCTTATTTC 58.577 34.615 0.00 0.00 0.00 2.17
240 241 5.627135 TCGACTTGGTTTCCTTATTTCCTT 58.373 37.500 0.00 0.00 0.00 3.36
264 265 9.778741 CTTATTTTCTAGTTCTGGGCATGTATA 57.221 33.333 0.00 0.00 0.00 1.47
294 296 5.893897 TTTTTGTTGCCTTTGCTTTTCAT 57.106 30.435 0.00 0.00 38.71 2.57
296 298 4.405116 TTGTTGCCTTTGCTTTTCATCT 57.595 36.364 0.00 0.00 38.71 2.90
298 300 3.384146 TGTTGCCTTTGCTTTTCATCTGA 59.616 39.130 0.00 0.00 38.71 3.27
299 301 4.039488 TGTTGCCTTTGCTTTTCATCTGAT 59.961 37.500 0.00 0.00 38.71 2.90
310 312 8.118976 TGCTTTTCATCTGATTCTTTTCTCAT 57.881 30.769 0.00 0.00 0.00 2.90
380 406 9.000018 GCTTACAAAAGAAAATCATCGTGTATC 58.000 33.333 0.00 0.00 34.37 2.24
420 446 7.033530 TGTTATGAAAAACTTGACCGTGATT 57.966 32.000 0.00 0.00 0.00 2.57
433 459 4.277174 TGACCGTGATTGCAAAAATGTAGT 59.723 37.500 1.71 0.00 0.00 2.73
436 462 6.919721 ACCGTGATTGCAAAAATGTAGTTAT 58.080 32.000 1.71 0.00 0.00 1.89
437 463 6.806249 ACCGTGATTGCAAAAATGTAGTTATG 59.194 34.615 1.71 0.00 0.00 1.90
438 464 6.237542 CCGTGATTGCAAAAATGTAGTTATGC 60.238 38.462 1.71 0.00 34.86 3.14
439 465 6.307558 CGTGATTGCAAAAATGTAGTTATGCA 59.692 34.615 1.71 0.00 39.54 3.96
450 476 9.640952 AAAATGTAGTTATGCAATATACACCCT 57.359 29.630 0.00 0.00 0.00 4.34
451 477 9.640952 AAATGTAGTTATGCAATATACACCCTT 57.359 29.630 0.00 0.00 0.00 3.95
452 478 9.640952 AATGTAGTTATGCAATATACACCCTTT 57.359 29.630 0.00 0.00 0.00 3.11
454 480 9.116067 TGTAGTTATGCAATATACACCCTTTTC 57.884 33.333 0.00 0.00 0.00 2.29
457 483 9.561069 AGTTATGCAATATACACCCTTTTCTAG 57.439 33.333 0.00 0.00 0.00 2.43
458 484 9.338622 GTTATGCAATATACACCCTTTTCTAGT 57.661 33.333 0.00 0.00 0.00 2.57
459 485 9.914834 TTATGCAATATACACCCTTTTCTAGTT 57.085 29.630 0.00 0.00 0.00 2.24
461 487 6.826741 TGCAATATACACCCTTTTCTAGTTCC 59.173 38.462 0.00 0.00 0.00 3.62
463 489 7.226918 GCAATATACACCCTTTTCTAGTTCCTC 59.773 40.741 0.00 0.00 0.00 3.71
464 490 3.679824 ACACCCTTTTCTAGTTCCTCG 57.320 47.619 0.00 0.00 0.00 4.63
466 492 3.006644 ACACCCTTTTCTAGTTCCTCGAC 59.993 47.826 0.00 0.00 0.00 4.20
467 493 3.006537 CACCCTTTTCTAGTTCCTCGACA 59.993 47.826 0.00 0.00 0.00 4.35
469 495 3.995048 CCCTTTTCTAGTTCCTCGACAAC 59.005 47.826 0.00 0.00 0.00 3.32
470 496 4.262506 CCCTTTTCTAGTTCCTCGACAACT 60.263 45.833 9.43 9.43 37.80 3.16
471 497 5.298347 CCTTTTCTAGTTCCTCGACAACTT 58.702 41.667 9.70 0.00 35.63 2.66
472 498 5.177696 CCTTTTCTAGTTCCTCGACAACTTG 59.822 44.000 9.70 8.41 35.63 3.16
473 499 3.936372 TCTAGTTCCTCGACAACTTGG 57.064 47.619 9.70 0.00 35.63 3.61
474 500 2.561419 TCTAGTTCCTCGACAACTTGGG 59.439 50.000 9.70 0.00 35.63 4.12
476 502 0.605589 GTTCCTCGACAACTTGGGGG 60.606 60.000 0.00 0.00 0.00 5.40
477 503 2.359975 CCTCGACAACTTGGGGGC 60.360 66.667 0.00 0.00 0.00 5.80
479 505 3.234630 CTCGACAACTTGGGGGCGA 62.235 63.158 0.00 0.00 0.00 5.54
480 506 2.281208 CGACAACTTGGGGGCGAA 60.281 61.111 0.00 0.00 0.00 4.70
482 508 1.241315 CGACAACTTGGGGGCGAAAT 61.241 55.000 0.00 0.00 0.00 2.17
483 509 0.243636 GACAACTTGGGGGCGAAATG 59.756 55.000 0.00 0.00 0.00 2.32
484 510 1.079888 CAACTTGGGGGCGAAATGC 60.080 57.895 0.00 0.00 45.38 3.56
493 519 2.998667 GCGAAATGCGGAGTCGAG 59.001 61.111 15.44 0.00 41.29 4.04
494 520 1.805945 GCGAAATGCGGAGTCGAGT 60.806 57.895 15.44 0.00 41.29 4.18
497 523 1.459592 CGAAATGCGGAGTCGAGTTTT 59.540 47.619 6.94 0.00 36.92 2.43
498 524 2.721797 CGAAATGCGGAGTCGAGTTTTG 60.722 50.000 6.94 0.00 36.92 2.44
499 525 1.156736 AATGCGGAGTCGAGTTTTGG 58.843 50.000 0.00 0.00 39.00 3.28
501 527 0.599204 TGCGGAGTCGAGTTTTGGAC 60.599 55.000 0.00 0.00 39.00 4.02
502 528 1.289800 GCGGAGTCGAGTTTTGGACC 61.290 60.000 0.00 0.00 39.00 4.46
504 530 1.270147 CGGAGTCGAGTTTTGGACCTT 60.270 52.381 0.00 0.00 39.00 3.50
505 531 2.143925 GGAGTCGAGTTTTGGACCTTG 58.856 52.381 0.00 0.00 32.98 3.61
506 532 2.143925 GAGTCGAGTTTTGGACCTTGG 58.856 52.381 0.00 0.00 32.98 3.61
507 533 1.489230 AGTCGAGTTTTGGACCTTGGT 59.511 47.619 0.00 0.00 32.98 3.67
508 534 2.092592 AGTCGAGTTTTGGACCTTGGTT 60.093 45.455 0.00 0.00 32.98 3.67
510 536 4.070009 GTCGAGTTTTGGACCTTGGTTAT 58.930 43.478 0.00 0.00 0.00 1.89
513 539 4.320935 CGAGTTTTGGACCTTGGTTATTGG 60.321 45.833 0.00 0.00 0.00 3.16
519 1649 4.547671 TGGACCTTGGTTATTGGTTTTGA 58.452 39.130 0.00 0.00 33.74 2.69
520 1650 4.962995 TGGACCTTGGTTATTGGTTTTGAA 59.037 37.500 0.00 0.00 33.74 2.69
522 1652 5.069914 GGACCTTGGTTATTGGTTTTGAAGT 59.930 40.000 0.00 0.00 33.74 3.01
523 1653 6.156748 ACCTTGGTTATTGGTTTTGAAGTC 57.843 37.500 0.00 0.00 0.00 3.01
531 1661 4.891992 TTGGTTTTGAAGTCCCAACAAA 57.108 36.364 0.00 0.00 32.20 2.83
532 1662 4.891992 TGGTTTTGAAGTCCCAACAAAA 57.108 36.364 0.00 0.00 39.87 2.44
534 1664 6.546428 TGGTTTTGAAGTCCCAACAAAATA 57.454 33.333 0.00 0.00 42.53 1.40
535 1665 7.130681 TGGTTTTGAAGTCCCAACAAAATAT 57.869 32.000 0.00 0.00 42.53 1.28
553 1683 8.221965 CAAAATATTTTGGGAGTACCTAGGAC 57.778 38.462 26.58 9.49 42.81 3.85
555 1685 6.997942 ATATTTTGGGAGTACCTAGGACTC 57.002 41.667 23.03 23.03 42.24 3.36
556 1686 3.839323 TTTGGGAGTACCTAGGACTCA 57.161 47.619 27.98 16.24 44.34 3.41
558 1688 3.596940 TGGGAGTACCTAGGACTCATC 57.403 52.381 27.98 22.26 44.34 2.92
559 1689 3.132056 TGGGAGTACCTAGGACTCATCT 58.868 50.000 27.98 13.95 44.34 2.90
560 1690 4.313362 TGGGAGTACCTAGGACTCATCTA 58.687 47.826 27.98 15.58 44.34 1.98
561 1691 4.351407 TGGGAGTACCTAGGACTCATCTAG 59.649 50.000 27.98 0.00 44.34 2.43
562 1692 4.598373 GGGAGTACCTAGGACTCATCTAGA 59.402 50.000 27.98 0.00 44.34 2.43
563 1693 5.252164 GGGAGTACCTAGGACTCATCTAGAT 59.748 48.000 27.98 0.00 44.34 1.98
564 1694 6.177610 GGAGTACCTAGGACTCATCTAGATG 58.822 48.000 27.98 24.32 44.34 2.90
565 1695 6.013206 GGAGTACCTAGGACTCATCTAGATGA 60.013 46.154 29.17 29.17 44.34 2.92
619 1930 9.814899 AAACAAAAACAGATACAATTCATGTCA 57.185 25.926 0.00 0.00 42.70 3.58
620 1931 9.467258 AACAAAAACAGATACAATTCATGTCAG 57.533 29.630 0.00 0.00 42.70 3.51
623 1934 5.808042 ACAGATACAATTCATGTCAGCAC 57.192 39.130 0.00 0.00 42.70 4.40
624 1935 5.247862 ACAGATACAATTCATGTCAGCACA 58.752 37.500 0.00 0.00 42.70 4.57
625 1936 5.122869 ACAGATACAATTCATGTCAGCACAC 59.877 40.000 0.00 0.00 42.70 3.82
626 1937 5.122711 CAGATACAATTCATGTCAGCACACA 59.877 40.000 0.00 0.00 42.70 3.72
627 1938 3.631145 ACAATTCATGTCAGCACACAC 57.369 42.857 0.00 0.00 37.96 3.82
634 1945 0.532640 TGTCAGCACACACGCATCTT 60.533 50.000 0.00 0.00 0.00 2.40
637 1948 3.186909 GTCAGCACACACGCATCTTATA 58.813 45.455 0.00 0.00 0.00 0.98
638 1949 3.616821 GTCAGCACACACGCATCTTATAA 59.383 43.478 0.00 0.00 0.00 0.98
639 1950 3.616821 TCAGCACACACGCATCTTATAAC 59.383 43.478 0.00 0.00 0.00 1.89
641 1952 4.034394 CAGCACACACGCATCTTATAACAT 59.966 41.667 0.00 0.00 0.00 2.71
642 1953 4.271049 AGCACACACGCATCTTATAACATC 59.729 41.667 0.00 0.00 0.00 3.06
643 1954 4.033932 GCACACACGCATCTTATAACATCA 59.966 41.667 0.00 0.00 0.00 3.07
644 1955 5.492854 CACACACGCATCTTATAACATCAC 58.507 41.667 0.00 0.00 0.00 3.06
645 1956 5.063312 CACACACGCATCTTATAACATCACA 59.937 40.000 0.00 0.00 0.00 3.58
647 1958 6.316140 ACACACGCATCTTATAACATCACATT 59.684 34.615 0.00 0.00 0.00 2.71
649 1960 8.334632 CACACGCATCTTATAACATCACATTTA 58.665 33.333 0.00 0.00 0.00 1.40
653 1964 9.333497 CGCATCTTATAACATCACATTTAATGG 57.667 33.333 9.88 0.00 33.60 3.16
654 1965 9.132521 GCATCTTATAACATCACATTTAATGGC 57.867 33.333 9.88 0.00 33.60 4.40
664 1975 9.200817 ACATCACATTTAATGGCTATAAAAGGT 57.799 29.630 9.88 0.00 33.60 3.50
665 1976 9.467258 CATCACATTTAATGGCTATAAAAGGTG 57.533 33.333 9.88 15.82 35.34 4.00
666 1977 8.815565 TCACATTTAATGGCTATAAAAGGTGA 57.184 30.769 9.88 18.11 37.77 4.02
672 1983 6.966534 AATGGCTATAAAAGGTGAATGAGG 57.033 37.500 0.00 0.00 0.00 3.86
673 1984 5.450818 TGGCTATAAAAGGTGAATGAGGT 57.549 39.130 0.00 0.00 0.00 3.85
674 1985 5.826643 TGGCTATAAAAGGTGAATGAGGTT 58.173 37.500 0.00 0.00 0.00 3.50
675 1986 6.964464 TGGCTATAAAAGGTGAATGAGGTTA 58.036 36.000 0.00 0.00 0.00 2.85
676 1987 7.406916 TGGCTATAAAAGGTGAATGAGGTTAA 58.593 34.615 0.00 0.00 0.00 2.01
677 1988 7.891183 TGGCTATAAAAGGTGAATGAGGTTAAA 59.109 33.333 0.00 0.00 0.00 1.52
678 1989 8.914011 GGCTATAAAAGGTGAATGAGGTTAAAT 58.086 33.333 0.00 0.00 0.00 1.40
714 2025 8.539770 CTAGATGAGTTCTAGCAAAACTGAAA 57.460 34.615 0.32 0.00 45.63 2.69
715 2026 7.992754 AGATGAGTTCTAGCAAAACTGAAAT 57.007 32.000 0.32 0.00 37.10 2.17
717 2028 9.678260 AGATGAGTTCTAGCAAAACTGAAATAT 57.322 29.630 0.32 0.00 37.10 1.28
728 2039 9.218440 AGCAAAACTGAAATATTTTATGTTGGG 57.782 29.630 1.43 5.76 0.00 4.12
729 2040 8.998377 GCAAAACTGAAATATTTTATGTTGGGT 58.002 29.630 1.43 0.00 0.00 4.51
732 2043 9.487790 AAACTGAAATATTTTATGTTGGGTGTG 57.512 29.630 1.43 0.00 0.00 3.82
733 2044 7.096551 ACTGAAATATTTTATGTTGGGTGTGC 58.903 34.615 1.43 0.00 0.00 4.57
734 2045 6.096036 TGAAATATTTTATGTTGGGTGTGCG 58.904 36.000 1.43 0.00 0.00 5.34
735 2046 4.647424 ATATTTTATGTTGGGTGTGCGG 57.353 40.909 0.00 0.00 0.00 5.69
736 2047 1.982660 TTTTATGTTGGGTGTGCGGA 58.017 45.000 0.00 0.00 0.00 5.54
763 2099 3.403057 TGCGCTTCGAACACTCGC 61.403 61.111 9.73 17.09 45.04 5.03
764 2100 3.403057 GCGCTTCGAACACTCGCA 61.403 61.111 18.29 0.00 45.04 5.10
765 2101 2.765785 CGCTTCGAACACTCGCAG 59.234 61.111 7.06 0.00 45.04 5.18
770 2106 2.286184 GCTTCGAACACTCGCAGAAAAA 60.286 45.455 0.00 0.00 45.04 1.94
779 2115 2.744202 ACTCGCAGAAAAATCGATGCTT 59.256 40.909 0.00 0.00 36.52 3.91
792 2128 1.532505 CGATGCTTTGCCGGATTTGAG 60.533 52.381 5.05 0.00 0.00 3.02
794 2130 1.327303 TGCTTTGCCGGATTTGAGTT 58.673 45.000 5.05 0.00 0.00 3.01
795 2131 1.269448 TGCTTTGCCGGATTTGAGTTC 59.731 47.619 5.05 0.00 0.00 3.01
796 2132 1.402852 GCTTTGCCGGATTTGAGTTCC 60.403 52.381 5.05 0.00 0.00 3.62
797 2133 1.202348 CTTTGCCGGATTTGAGTTCCC 59.798 52.381 5.05 0.00 0.00 3.97
798 2134 0.958382 TTGCCGGATTTGAGTTCCCG 60.958 55.000 5.05 0.00 41.47 5.14
801 2137 2.466867 CGGATTTGAGTTCCCGGTG 58.533 57.895 0.00 0.00 38.42 4.94
802 2138 1.024579 CGGATTTGAGTTCCCGGTGG 61.025 60.000 0.00 0.00 38.42 4.61
803 2139 0.326927 GGATTTGAGTTCCCGGTGGA 59.673 55.000 0.00 0.00 39.54 4.02
804 2140 1.450025 GATTTGAGTTCCCGGTGGAC 58.550 55.000 0.00 0.00 41.57 4.02
805 2141 0.768622 ATTTGAGTTCCCGGTGGACA 59.231 50.000 0.00 0.00 41.57 4.02
806 2142 0.768622 TTTGAGTTCCCGGTGGACAT 59.231 50.000 0.00 0.00 41.57 3.06
807 2143 0.036164 TTGAGTTCCCGGTGGACATG 59.964 55.000 0.00 0.00 41.57 3.21
808 2144 1.078426 GAGTTCCCGGTGGACATGG 60.078 63.158 0.00 0.00 41.57 3.66
809 2145 1.537889 AGTTCCCGGTGGACATGGA 60.538 57.895 0.00 0.00 41.57 3.41
812 2148 1.966901 TTCCCGGTGGACATGGATCG 61.967 60.000 0.00 0.00 41.57 3.69
832 2168 3.052036 CGCCAAATTCCAAGACTTGTTG 58.948 45.455 14.03 10.94 0.00 3.33
836 2172 3.375782 AATTCCAAGACTTGTTGCTGC 57.624 42.857 14.03 0.00 0.00 5.25
877 2226 1.845809 CTGACGACAGGGTTGCTTGC 61.846 60.000 7.02 0.00 40.14 4.01
913 2262 3.107601 TCCTCTTCCAAACCATCGATCT 58.892 45.455 0.00 0.00 0.00 2.75
988 2343 3.071206 ATCCGCCTGCGTCTCTGT 61.071 61.111 10.94 0.00 37.81 3.41
989 2344 3.069980 ATCCGCCTGCGTCTCTGTC 62.070 63.158 10.94 0.00 37.81 3.51
990 2345 3.753434 CCGCCTGCGTCTCTGTCT 61.753 66.667 10.94 0.00 37.81 3.41
991 2346 2.505777 CGCCTGCGTCTCTGTCTG 60.506 66.667 2.83 0.00 34.35 3.51
1054 2409 1.153389 GAGAGCCTTCTGCCAGAGC 60.153 63.158 0.00 0.00 42.71 4.09
1242 2597 1.009900 CGTCTCGCAGTCCCGTATC 60.010 63.158 0.00 0.00 0.00 2.24
1247 2602 1.009222 CGCAGTCCCGTATCGGTAC 60.009 63.158 7.40 0.00 46.80 3.34
1248 2603 1.442526 CGCAGTCCCGTATCGGTACT 61.443 60.000 3.99 4.12 46.68 2.73
1249 2604 1.597742 GCAGTCCCGTATCGGTACTA 58.402 55.000 3.99 0.00 44.04 1.82
1256 2611 5.690097 AGTCCCGTATCGGTACTAACCAATA 60.690 44.000 3.99 0.00 44.04 1.90
1280 2635 2.021639 TCCATCCCCTCTCCTGATCTTT 60.022 50.000 0.00 0.00 0.00 2.52
1281 2636 3.209843 TCCATCCCCTCTCCTGATCTTTA 59.790 47.826 0.00 0.00 0.00 1.85
1282 2637 3.326297 CCATCCCCTCTCCTGATCTTTAC 59.674 52.174 0.00 0.00 0.00 2.01
1283 2638 4.230455 CATCCCCTCTCCTGATCTTTACT 58.770 47.826 0.00 0.00 0.00 2.24
1284 2639 4.354208 TCCCCTCTCCTGATCTTTACTT 57.646 45.455 0.00 0.00 0.00 2.24
1285 2640 4.033709 TCCCCTCTCCTGATCTTTACTTG 58.966 47.826 0.00 0.00 0.00 3.16
1297 2656 6.571605 TGATCTTTACTTGCTCTGATCTGAG 58.428 40.000 21.77 21.77 37.16 3.35
1339 2698 8.547967 AAGAAAGCTTAATTACAAGTCGATCA 57.452 30.769 0.00 0.00 31.07 2.92
1580 2939 1.379977 TCCTCCGATGCTTCTCCGT 60.380 57.895 0.00 0.00 0.00 4.69
1583 2942 2.892425 CCGATGCTTCTCCGTGGC 60.892 66.667 0.00 0.00 0.00 5.01
1584 2943 2.125552 CGATGCTTCTCCGTGGCA 60.126 61.111 0.00 0.00 40.32 4.92
1706 3065 0.318441 TCTTCCTCTTCACCACTGCG 59.682 55.000 0.00 0.00 0.00 5.18
1739 3098 2.203538 CTGGCCTGCACCAAGGTT 60.204 61.111 3.32 0.00 39.86 3.50
1740 3099 1.074775 CTGGCCTGCACCAAGGTTA 59.925 57.895 3.32 0.00 39.86 2.85
1741 3100 1.228429 TGGCCTGCACCAAGGTTAC 60.228 57.895 3.32 0.00 39.75 2.50
1742 3101 1.977009 GGCCTGCACCAAGGTTACC 60.977 63.158 0.00 0.00 39.75 2.85
1743 3102 1.074951 GCCTGCACCAAGGTTACCT 59.925 57.895 0.00 0.00 39.75 3.08
1746 3105 1.349688 CCTGCACCAAGGTTACCTACA 59.650 52.381 3.55 0.00 31.13 2.74
1758 3117 7.879160 CCAAGGTTACCTACAACAATTACAGTA 59.121 37.037 3.55 0.00 31.13 2.74
2091 3461 0.319211 CGCTCAACTTGGACGGTACA 60.319 55.000 0.00 0.00 0.00 2.90
2100 3470 1.310904 TGGACGGTACAAAAACTGGC 58.689 50.000 0.00 0.00 32.51 4.85
2101 3471 0.594602 GGACGGTACAAAAACTGGCC 59.405 55.000 0.00 0.00 46.65 5.36
2102 3472 0.236449 GACGGTACAAAAACTGGCCG 59.764 55.000 0.00 0.00 46.57 6.13
2103 3473 1.167781 ACGGTACAAAAACTGGCCGG 61.168 55.000 11.02 11.02 45.91 6.13
2104 3474 1.287815 GGTACAAAAACTGGCCGGC 59.712 57.895 21.18 21.18 0.00 6.13
2117 3487 1.587043 GGCCGGCTTGTTTCTTCTCC 61.587 60.000 28.56 0.00 0.00 3.71
2261 3632 1.376942 CCCAGCAGAGCAAGTCCAG 60.377 63.158 0.00 0.00 0.00 3.86
2517 3888 2.688794 GGACGTCCTCGAGTCGCTT 61.689 63.158 27.64 8.14 40.62 4.68
2651 4040 2.753452 ACTGGTATGTGTACGTCCTCTG 59.247 50.000 0.00 0.00 0.00 3.35
2654 4043 1.108776 TATGTGTACGTCCTCTGGGC 58.891 55.000 0.00 0.00 0.00 5.36
2665 4055 1.678635 CTCTGGGCCGGCATTGAAA 60.679 57.895 30.85 7.05 0.00 2.69
2739 4129 3.118847 TCTCAAGCATCGAGAGCAAATCT 60.119 43.478 14.14 0.00 42.61 2.40
2864 4254 2.881111 TATGGAGAGATCGACGGGAT 57.119 50.000 0.00 0.00 38.35 3.85
2907 4297 2.367202 GGTCTTGGCGAGGGGATCA 61.367 63.158 0.97 0.00 0.00 2.92
2964 4355 4.153475 ACATACATTTGGTACGTGCTTGAC 59.847 41.667 3.01 0.00 34.07 3.18
2966 4357 1.136085 CATTTGGTACGTGCTTGACCG 60.136 52.381 3.01 0.00 35.91 4.79
3019 4410 4.836125 TGCAGTTCCAGAAAGAATGAAC 57.164 40.909 0.00 0.00 37.86 3.18
3037 4428 1.446272 CGGTCTGAAAGGCGTCTCC 60.446 63.158 0.00 0.00 41.72 3.71
3040 4431 1.363744 GTCTGAAAGGCGTCTCCATG 58.636 55.000 0.00 0.00 37.29 3.66
3079 4470 1.664306 GGACCTCGTCGGAGTGTTT 59.336 57.895 0.00 0.00 38.70 2.83
3082 4473 0.033090 ACCTCGTCGGAGTGTTTTCC 59.967 55.000 0.00 0.00 38.70 3.13
3088 4479 1.343465 GTCGGAGTGTTTTCCCTCTCA 59.657 52.381 0.00 0.00 33.46 3.27
3171 4562 1.305802 TACTGCTCACGGGGGACAT 60.306 57.895 0.00 0.00 0.00 3.06
3227 4618 2.747855 GCGCCTTGTTGGAGGAGG 60.748 66.667 0.00 0.00 39.25 4.30
3439 4830 2.786495 CGACATCCTCAGGGTCCCG 61.786 68.421 0.99 0.00 0.00 5.14
3718 5109 2.419198 GCCGCTGTCTCATCGGAT 59.581 61.111 14.66 0.00 44.57 4.18
3719 5110 1.953138 GCCGCTGTCTCATCGGATG 60.953 63.158 11.79 11.79 44.57 3.51
3720 5111 1.953138 CCGCTGTCTCATCGGATGC 60.953 63.158 13.15 0.00 44.57 3.91
3799 5190 2.270986 CCACAAGCCAAGCAGGTCC 61.271 63.158 0.00 0.00 40.61 4.46
3829 5220 2.162754 GGTTGCCATCGACGTACGG 61.163 63.158 21.06 2.32 42.82 4.02
3909 5300 1.080093 TCACCGGATCTGTCAACGC 60.080 57.895 9.46 0.00 0.00 4.84
3911 5302 0.670546 CACCGGATCTGTCAACGCTT 60.671 55.000 9.46 0.00 0.00 4.68
4048 5440 7.927048 ACAGGTAAGTTGACTGAATTTGTAAC 58.073 34.615 13.54 0.00 36.17 2.50
4057 5449 7.504924 TGACTGAATTTGTAACTTGGGTAAG 57.495 36.000 0.00 0.00 39.86 2.34
4181 5573 5.046159 TGGTTAAGAACATCGACTTACCCAT 60.046 40.000 5.91 0.00 36.66 4.00
4210 5602 5.416271 TTGGGTATGTCTAGGTTTCAGTC 57.584 43.478 0.00 0.00 0.00 3.51
4217 5622 3.502595 TGTCTAGGTTTCAGTCGACTCAG 59.497 47.826 16.96 5.75 0.00 3.35
4222 5627 3.053455 GGTTTCAGTCGACTCAGTCAAG 58.947 50.000 16.96 2.43 32.09 3.02
4234 5639 7.166638 GTCGACTCAGTCAAGTGATATAACATG 59.833 40.741 8.70 0.00 32.09 3.21
4237 5642 9.973450 GACTCAGTCAAGTGATATAACATGTAT 57.027 33.333 0.00 0.00 32.09 2.29
4304 5709 5.671493 TGAGATCTCACGAGTATAGTGTCA 58.329 41.667 21.67 0.00 42.66 3.58
4305 5710 6.113411 TGAGATCTCACGAGTATAGTGTCAA 58.887 40.000 21.67 0.00 42.66 3.18
4306 5711 6.768381 TGAGATCTCACGAGTATAGTGTCAAT 59.232 38.462 21.67 0.00 42.66 2.57
4307 5712 7.283354 TGAGATCTCACGAGTATAGTGTCAATT 59.717 37.037 21.67 0.00 42.66 2.32
4308 5713 7.421599 AGATCTCACGAGTATAGTGTCAATTG 58.578 38.462 0.00 0.00 42.66 2.32
4309 5714 6.753107 TCTCACGAGTATAGTGTCAATTGA 57.247 37.500 3.38 3.38 42.66 2.57
4310 5715 6.786207 TCTCACGAGTATAGTGTCAATTGAG 58.214 40.000 8.80 0.00 42.66 3.02
4312 5717 6.552629 TCACGAGTATAGTGTCAATTGAGAC 58.447 40.000 24.30 24.30 42.66 3.36
4314 5719 7.030165 CACGAGTATAGTGTCAATTGAGACTT 58.970 38.462 34.83 25.21 44.98 3.01
4315 5720 8.182227 CACGAGTATAGTGTCAATTGAGACTTA 58.818 37.037 34.83 24.41 44.98 2.24
4316 5721 8.399425 ACGAGTATAGTGTCAATTGAGACTTAG 58.601 37.037 34.83 22.19 44.98 2.18
4324 5746 5.698089 TGTCAATTGAGACTTAGCAAGACTG 59.302 40.000 8.80 0.00 39.27 3.51
4329 5751 8.725148 CAATTGAGACTTAGCAAGACTGTTAAT 58.275 33.333 0.00 3.05 33.75 1.40
4335 5757 8.283291 AGACTTAGCAAGACTGTTAATTTTTCG 58.717 33.333 3.37 0.00 32.40 3.46
4336 5758 7.927048 ACTTAGCAAGACTGTTAATTTTTCGT 58.073 30.769 3.37 0.00 29.14 3.85
4344 5766 3.937874 TGTTAATTTTTCGTGCGACGTT 58.062 36.364 8.22 0.00 43.14 3.99
4356 5778 5.691815 TCGTGCGACGTTGATGAATATATA 58.308 37.500 7.08 0.00 43.14 0.86
4357 5779 6.144175 TCGTGCGACGTTGATGAATATATAA 58.856 36.000 7.08 0.00 43.14 0.98
4358 5780 6.637658 TCGTGCGACGTTGATGAATATATAAA 59.362 34.615 7.08 0.00 43.14 1.40
4359 5781 7.167801 TCGTGCGACGTTGATGAATATATAAAA 59.832 33.333 7.08 0.00 43.14 1.52
4360 5782 7.790216 CGTGCGACGTTGATGAATATATAAAAA 59.210 33.333 7.08 0.00 36.74 1.94
4378 5800 2.309136 AAATGAGACCAACCCAAGGG 57.691 50.000 2.91 2.91 42.03 3.95
4379 5801 0.251787 AATGAGACCAACCCAAGGGC 60.252 55.000 4.70 0.00 39.32 5.19
4381 5803 4.681624 AGACCAACCCAAGGGCTA 57.318 55.556 4.70 0.00 44.68 3.93
4382 5804 2.877150 AGACCAACCCAAGGGCTAA 58.123 52.632 4.70 0.00 44.68 3.09
4383 5805 0.404426 AGACCAACCCAAGGGCTAAC 59.596 55.000 4.70 0.00 44.68 2.34
4384 5806 0.611062 GACCAACCCAAGGGCTAACC 60.611 60.000 4.70 0.00 39.32 2.85
4401 5823 5.576447 CTAACCCTCGTTGGCATTTATTT 57.424 39.130 0.00 0.00 33.17 1.40
4402 5824 6.687081 CTAACCCTCGTTGGCATTTATTTA 57.313 37.500 0.00 0.00 33.17 1.40
4403 5825 7.272037 CTAACCCTCGTTGGCATTTATTTAT 57.728 36.000 0.00 0.00 33.17 1.40
4404 5826 8.385898 CTAACCCTCGTTGGCATTTATTTATA 57.614 34.615 0.00 0.00 33.17 0.98
4405 5827 6.877611 ACCCTCGTTGGCATTTATTTATAG 57.122 37.500 0.00 0.00 0.00 1.31
4406 5828 5.768164 ACCCTCGTTGGCATTTATTTATAGG 59.232 40.000 0.00 0.00 0.00 2.57
4407 5829 6.001460 CCCTCGTTGGCATTTATTTATAGGA 58.999 40.000 0.00 0.00 0.00 2.94
4408 5830 6.149474 CCCTCGTTGGCATTTATTTATAGGAG 59.851 42.308 0.00 0.00 0.00 3.69
4409 5831 6.934645 CCTCGTTGGCATTTATTTATAGGAGA 59.065 38.462 0.00 0.00 0.00 3.71
4410 5832 7.444183 CCTCGTTGGCATTTATTTATAGGAGAA 59.556 37.037 0.00 0.00 0.00 2.87
4411 5833 8.740123 TCGTTGGCATTTATTTATAGGAGAAA 57.260 30.769 0.00 0.00 0.00 2.52
4412 5834 8.617809 TCGTTGGCATTTATTTATAGGAGAAAC 58.382 33.333 0.00 0.00 0.00 2.78
4413 5835 8.621286 CGTTGGCATTTATTTATAGGAGAAACT 58.379 33.333 0.00 0.00 0.00 2.66
4414 5836 9.952188 GTTGGCATTTATTTATAGGAGAAACTC 57.048 33.333 0.00 0.00 0.00 3.01
4422 5844 2.261671 GGAGAAACTCCGCGAGCA 59.738 61.111 8.23 0.00 41.08 4.26
4423 5845 2.095252 GGAGAAACTCCGCGAGCAC 61.095 63.158 8.23 0.00 41.08 4.40
4424 5846 2.048127 AGAAACTCCGCGAGCACC 60.048 61.111 8.23 0.00 32.04 5.01
4425 5847 2.357034 GAAACTCCGCGAGCACCA 60.357 61.111 8.23 0.00 32.04 4.17
4426 5848 2.665185 AAACTCCGCGAGCACCAC 60.665 61.111 8.23 0.00 32.04 4.16
4433 5855 4.961511 GCGAGCACCACGTGTCCA 62.962 66.667 15.65 0.00 35.75 4.02
4434 5856 2.279851 CGAGCACCACGTGTCCAA 60.280 61.111 15.65 0.00 35.75 3.53
4435 5857 2.310233 CGAGCACCACGTGTCCAAG 61.310 63.158 15.65 0.51 35.75 3.61
4436 5858 2.591715 AGCACCACGTGTCCAAGC 60.592 61.111 15.65 10.42 35.75 4.01
4437 5859 3.660111 GCACCACGTGTCCAAGCC 61.660 66.667 15.65 0.00 35.75 4.35
4438 5860 3.345808 CACCACGTGTCCAAGCCG 61.346 66.667 15.65 0.00 0.00 5.52
4439 5861 4.619227 ACCACGTGTCCAAGCCGG 62.619 66.667 15.65 0.00 0.00 6.13
4441 5863 4.308458 CACGTGTCCAAGCCGGGA 62.308 66.667 7.58 0.00 34.36 5.14
4451 5873 1.004918 AAGCCGGGACTTGAACTCG 60.005 57.895 2.18 0.00 0.00 4.18
4453 5875 2.264794 CCGGGACTTGAACTCGGG 59.735 66.667 0.00 0.00 46.21 5.14
4454 5876 2.580601 CCGGGACTTGAACTCGGGT 61.581 63.158 0.00 0.00 46.21 5.28
4455 5877 1.374252 CGGGACTTGAACTCGGGTG 60.374 63.158 0.00 0.00 0.00 4.61
4456 5878 1.003718 GGGACTTGAACTCGGGTGG 60.004 63.158 0.00 0.00 0.00 4.61
4457 5879 1.003718 GGACTTGAACTCGGGTGGG 60.004 63.158 0.00 0.00 0.00 4.61
4458 5880 1.671379 GACTTGAACTCGGGTGGGC 60.671 63.158 0.00 0.00 0.00 5.36
4459 5881 2.113243 GACTTGAACTCGGGTGGGCT 62.113 60.000 0.00 0.00 0.00 5.19
4460 5882 1.672356 CTTGAACTCGGGTGGGCTG 60.672 63.158 0.00 0.00 0.00 4.85
4461 5883 3.190738 TTGAACTCGGGTGGGCTGG 62.191 63.158 0.00 0.00 0.00 4.85
4469 5891 3.455469 GGTGGGCTGGCAGCAATC 61.455 66.667 37.49 25.95 44.75 2.67
4470 5892 2.362120 GTGGGCTGGCAGCAATCT 60.362 61.111 37.49 0.00 44.75 2.40
4471 5893 2.044650 TGGGCTGGCAGCAATCTC 60.045 61.111 37.49 21.25 44.75 2.75
4472 5894 2.044650 GGGCTGGCAGCAATCTCA 60.045 61.111 37.49 0.00 44.75 3.27
4473 5895 2.119655 GGGCTGGCAGCAATCTCAG 61.120 63.158 37.49 0.50 44.75 3.35
4474 5896 2.799371 GCTGGCAGCAATCTCAGC 59.201 61.111 33.33 4.00 44.34 4.26
4475 5897 1.749638 GCTGGCAGCAATCTCAGCT 60.750 57.895 33.33 0.00 46.29 4.24
4480 5902 3.084304 AGCAATCTCAGCTGCCCA 58.916 55.556 9.47 0.00 41.61 5.36
4481 5903 1.077644 AGCAATCTCAGCTGCCCAG 60.078 57.895 9.47 1.01 41.61 4.45
4482 5904 1.378250 GCAATCTCAGCTGCCCAGT 60.378 57.895 9.47 0.00 32.18 4.00
4483 5905 1.375098 GCAATCTCAGCTGCCCAGTC 61.375 60.000 9.47 0.00 32.18 3.51
4484 5906 0.035725 CAATCTCAGCTGCCCAGTCA 60.036 55.000 9.47 0.00 0.00 3.41
4485 5907 0.694771 AATCTCAGCTGCCCAGTCAA 59.305 50.000 9.47 0.00 0.00 3.18
4486 5908 0.035630 ATCTCAGCTGCCCAGTCAAC 60.036 55.000 9.47 0.00 0.00 3.18
4487 5909 2.031012 TCAGCTGCCCAGTCAACG 59.969 61.111 9.47 0.00 0.00 4.10
4488 5910 3.052082 CAGCTGCCCAGTCAACGG 61.052 66.667 0.00 0.00 0.00 4.44
4490 5912 4.643387 GCTGCCCAGTCAACGGGT 62.643 66.667 10.39 0.00 46.40 5.28
4491 5913 2.358737 CTGCCCAGTCAACGGGTC 60.359 66.667 10.39 0.00 46.40 4.46
4492 5914 4.308458 TGCCCAGTCAACGGGTCG 62.308 66.667 10.39 0.00 46.40 4.79
4493 5915 3.998672 GCCCAGTCAACGGGTCGA 61.999 66.667 10.39 0.00 46.40 4.20
4494 5916 2.048503 CCCAGTCAACGGGTCGAC 60.049 66.667 7.13 7.13 39.05 4.20
4510 5932 2.418356 ACGAAAGTGGAACCGCGA 59.582 55.556 8.23 0.00 46.97 5.87
4531 5953 0.531974 GTGGCACGTGTGGAAAGAGA 60.532 55.000 18.38 0.00 0.00 3.10
4548 5970 7.042950 GGAAAGAGAGTAACCATCCTAGTTTC 58.957 42.308 0.00 0.00 0.00 2.78
4561 5983 5.531753 TCCTAGTTTCTAGAACTCCTCCA 57.468 43.478 4.18 0.00 0.00 3.86
4564 5989 5.894393 CCTAGTTTCTAGAACTCCTCCATCA 59.106 44.000 4.18 0.00 0.00 3.07
4573 5998 4.592351 AGAACTCCTCCATCATGGTAGATG 59.408 45.833 2.79 0.00 43.90 2.90
4593 6018 6.739112 AGATGTTGCTTTTCTTGTAAAGGAC 58.261 36.000 0.00 0.00 46.24 3.85
4616 6041 2.145536 CATTGGAAAGCAAAGGTTGGC 58.854 47.619 0.00 0.00 0.00 4.52
4739 6164 1.986575 GCTCCTGCTTTGCATCGTCC 61.987 60.000 0.00 0.00 38.13 4.79
4759 6184 4.035441 GTCCAAAAACAAATGTGCATTGCT 59.965 37.500 10.49 0.00 0.00 3.91
4760 6185 4.272991 TCCAAAAACAAATGTGCATTGCTC 59.727 37.500 10.49 6.99 0.00 4.26
4773 6198 5.163530 TGTGCATTGCTCATTTAAGTATGGG 60.164 40.000 10.49 0.00 0.00 4.00
4777 6202 6.643770 GCATTGCTCATTTAAGTATGGGAATG 59.356 38.462 0.16 12.89 37.45 2.67
4778 6203 5.772825 TGCTCATTTAAGTATGGGAATGC 57.227 39.130 0.00 0.00 31.33 3.56
4798 6223 5.895636 TGCCATACTATTGGTTTGAGTTG 57.104 39.130 0.00 0.00 39.11 3.16
4802 6227 7.148086 TGCCATACTATTGGTTTGAGTTGAATC 60.148 37.037 0.00 0.00 39.11 2.52
4808 6233 7.824779 ACTATTGGTTTGAGTTGAATCTAGTCC 59.175 37.037 0.00 0.00 0.00 3.85
4812 6237 5.179533 GTTTGAGTTGAATCTAGTCCCCTC 58.820 45.833 0.00 0.00 0.00 4.30
4813 6238 3.024547 TGAGTTGAATCTAGTCCCCTCG 58.975 50.000 0.00 0.00 0.00 4.63
4853 6313 5.994054 TCCTTGCAATCTCTATGATGCTTAC 59.006 40.000 0.00 0.00 35.21 2.34
4854 6314 5.761726 CCTTGCAATCTCTATGATGCTTACA 59.238 40.000 0.00 0.00 35.21 2.41
4855 6315 6.261603 CCTTGCAATCTCTATGATGCTTACAA 59.738 38.462 0.00 0.00 35.21 2.41
4856 6316 7.040617 CCTTGCAATCTCTATGATGCTTACAAT 60.041 37.037 0.00 0.00 35.21 2.71
4857 6317 7.430992 TGCAATCTCTATGATGCTTACAATC 57.569 36.000 0.00 0.00 35.21 2.67
4858 6318 6.993902 TGCAATCTCTATGATGCTTACAATCA 59.006 34.615 0.00 0.00 35.21 2.57
4859 6319 7.664318 TGCAATCTCTATGATGCTTACAATCAT 59.336 33.333 4.48 4.48 38.45 2.45
4860 6320 8.512956 GCAATCTCTATGATGCTTACAATCATT 58.487 33.333 4.38 0.00 36.54 2.57
4936 6396 1.005512 TAGTGTGCGCCGTTGTCAT 60.006 52.632 4.18 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.083293 GTGAGATATACTCCCTCCGTCC 58.917 54.545 0.00 0.00 44.34 4.79
1 2 4.023726 AGTGAGATATACTCCCTCCGTC 57.976 50.000 0.00 0.00 44.34 4.79
2 3 4.456662 AAGTGAGATATACTCCCTCCGT 57.543 45.455 0.00 0.00 44.34 4.69
3 4 6.434652 ACAATAAGTGAGATATACTCCCTCCG 59.565 42.308 0.00 0.00 44.34 4.63
4 5 7.784470 ACAATAAGTGAGATATACTCCCTCC 57.216 40.000 0.00 0.00 44.34 4.30
20 21 2.555199 GGCGCTGATCTCACAATAAGT 58.445 47.619 7.64 0.00 0.00 2.24
21 22 1.869767 GGGCGCTGATCTCACAATAAG 59.130 52.381 7.64 0.00 0.00 1.73
22 23 1.209261 TGGGCGCTGATCTCACAATAA 59.791 47.619 7.64 0.00 0.00 1.40
23 24 0.829990 TGGGCGCTGATCTCACAATA 59.170 50.000 7.64 0.00 0.00 1.90
24 25 0.745845 GTGGGCGCTGATCTCACAAT 60.746 55.000 7.64 0.00 0.00 2.71
25 26 1.375908 GTGGGCGCTGATCTCACAA 60.376 57.895 7.64 0.00 0.00 3.33
26 27 2.230994 GAGTGGGCGCTGATCTCACA 62.231 60.000 7.64 0.00 0.00 3.58
27 28 1.520342 GAGTGGGCGCTGATCTCAC 60.520 63.158 7.64 6.87 0.00 3.51
28 29 2.895680 GAGTGGGCGCTGATCTCA 59.104 61.111 7.64 0.00 0.00 3.27
29 30 2.279120 CGAGTGGGCGCTGATCTC 60.279 66.667 7.64 9.58 0.00 2.75
38 39 1.153549 CTAACTGAGGCGAGTGGGC 60.154 63.158 0.00 0.00 42.69 5.36
39 40 0.173708 GTCTAACTGAGGCGAGTGGG 59.826 60.000 0.00 0.00 0.00 4.61
40 41 0.888619 TGTCTAACTGAGGCGAGTGG 59.111 55.000 0.00 0.00 29.50 4.00
41 42 2.534298 CATGTCTAACTGAGGCGAGTG 58.466 52.381 0.00 0.00 29.50 3.51
42 43 1.478510 CCATGTCTAACTGAGGCGAGT 59.521 52.381 0.00 0.00 29.50 4.18
43 44 1.202463 CCCATGTCTAACTGAGGCGAG 60.202 57.143 0.00 0.00 29.50 5.03
44 45 0.824109 CCCATGTCTAACTGAGGCGA 59.176 55.000 0.00 0.00 29.50 5.54
45 46 0.179073 CCCCATGTCTAACTGAGGCG 60.179 60.000 0.00 0.00 29.50 5.52
46 47 0.912486 ACCCCATGTCTAACTGAGGC 59.088 55.000 0.00 0.00 0.00 4.70
47 48 2.356125 CCAACCCCATGTCTAACTGAGG 60.356 54.545 0.00 0.00 0.00 3.86
48 49 2.941415 GCCAACCCCATGTCTAACTGAG 60.941 54.545 0.00 0.00 0.00 3.35
49 50 1.004277 GCCAACCCCATGTCTAACTGA 59.996 52.381 0.00 0.00 0.00 3.41
50 51 1.463674 GCCAACCCCATGTCTAACTG 58.536 55.000 0.00 0.00 0.00 3.16
51 52 0.331616 GGCCAACCCCATGTCTAACT 59.668 55.000 0.00 0.00 0.00 2.24
52 53 0.039035 TGGCCAACCCCATGTCTAAC 59.961 55.000 0.61 0.00 33.59 2.34
53 54 0.331278 CTGGCCAACCCCATGTCTAA 59.669 55.000 7.01 0.00 33.64 2.10
54 55 1.998530 CTGGCCAACCCCATGTCTA 59.001 57.895 7.01 0.00 33.64 2.59
55 56 2.765969 CTGGCCAACCCCATGTCT 59.234 61.111 7.01 0.00 33.64 3.41
56 57 3.070576 GCTGGCCAACCCCATGTC 61.071 66.667 7.01 0.00 33.64 3.06
57 58 3.590466 GAGCTGGCCAACCCCATGT 62.590 63.158 7.01 0.00 33.64 3.21
58 59 2.757099 GAGCTGGCCAACCCCATG 60.757 66.667 7.01 0.00 33.64 3.66
59 60 3.267233 TGAGCTGGCCAACCCCAT 61.267 61.111 7.01 0.00 33.64 4.00
60 61 3.970410 CTGAGCTGGCCAACCCCA 61.970 66.667 7.01 2.55 33.59 4.96
61 62 2.543067 CTACTGAGCTGGCCAACCCC 62.543 65.000 7.01 0.00 33.59 4.95
62 63 1.078143 CTACTGAGCTGGCCAACCC 60.078 63.158 7.01 0.00 33.59 4.11
63 64 1.746991 GCTACTGAGCTGGCCAACC 60.747 63.158 7.01 0.00 45.98 3.77
64 65 3.896479 GCTACTGAGCTGGCCAAC 58.104 61.111 7.01 0.92 45.98 3.77
72 73 0.248134 CTCGGTACACGCTACTGAGC 60.248 60.000 13.89 0.00 42.04 4.26
73 74 3.899836 CTCGGTACACGCTACTGAG 57.100 57.895 12.85 12.85 42.40 3.35
74 75 0.956902 TGCTCGGTACACGCTACTGA 60.957 55.000 0.00 3.12 43.86 3.41
75 76 0.109458 TTGCTCGGTACACGCTACTG 60.109 55.000 0.00 0.00 43.86 2.74
76 77 0.170561 CTTGCTCGGTACACGCTACT 59.829 55.000 0.00 0.00 43.86 2.57
77 78 0.801067 CCTTGCTCGGTACACGCTAC 60.801 60.000 0.00 0.00 43.86 3.58
106 107 1.425066 TGGGCCAACTGAGAAACTCAT 59.575 47.619 2.13 0.00 39.92 2.90
178 179 9.624697 TGAAAAGATGGAACGAAAGAATAAATG 57.375 29.630 0.00 0.00 0.00 2.32
189 190 8.842358 AGTAACTAAATGAAAAGATGGAACGA 57.158 30.769 0.00 0.00 0.00 3.85
200 201 8.895737 ACCAAGTCGAAAAGTAACTAAATGAAA 58.104 29.630 0.00 0.00 0.00 2.69
202 203 8.441312 AACCAAGTCGAAAAGTAACTAAATGA 57.559 30.769 0.00 0.00 0.00 2.57
233 234 7.182060 TGCCCAGAACTAGAAAATAAGGAAAT 58.818 34.615 0.00 0.00 0.00 2.17
234 235 6.548321 TGCCCAGAACTAGAAAATAAGGAAA 58.452 36.000 0.00 0.00 0.00 3.13
237 238 5.888161 ACATGCCCAGAACTAGAAAATAAGG 59.112 40.000 0.00 0.00 0.00 2.69
286 288 7.428761 CGATGAGAAAAGAATCAGATGAAAAGC 59.571 37.037 0.00 0.00 0.00 3.51
294 296 8.601845 TTTTACACGATGAGAAAAGAATCAGA 57.398 30.769 0.00 0.00 0.00 3.27
349 352 8.246180 ACGATGATTTTCTTTTGTAAGCATGAT 58.754 29.630 0.00 0.00 0.00 2.45
350 353 7.538334 CACGATGATTTTCTTTTGTAAGCATGA 59.462 33.333 0.00 0.00 0.00 3.07
351 354 7.326789 ACACGATGATTTTCTTTTGTAAGCATG 59.673 33.333 0.00 0.00 0.00 4.06
352 355 7.370383 ACACGATGATTTTCTTTTGTAAGCAT 58.630 30.769 0.00 0.00 0.00 3.79
353 356 6.734137 ACACGATGATTTTCTTTTGTAAGCA 58.266 32.000 0.00 0.00 0.00 3.91
354 357 8.895932 ATACACGATGATTTTCTTTTGTAAGC 57.104 30.769 0.00 0.00 0.00 3.09
389 415 8.812329 CGGTCAAGTTTTTCATAACAAAAATGA 58.188 29.630 0.00 0.00 37.52 2.57
396 422 6.627395 ATCACGGTCAAGTTTTTCATAACA 57.373 33.333 0.00 0.00 0.00 2.41
397 423 6.129194 GCAATCACGGTCAAGTTTTTCATAAC 60.129 38.462 0.00 0.00 0.00 1.89
401 427 3.129462 TGCAATCACGGTCAAGTTTTTCA 59.871 39.130 0.00 0.00 0.00 2.69
402 428 3.701241 TGCAATCACGGTCAAGTTTTTC 58.299 40.909 0.00 0.00 0.00 2.29
413 439 6.237542 GCATAACTACATTTTTGCAATCACGG 60.238 38.462 0.00 0.00 31.68 4.94
433 459 9.914834 AACTAGAAAAGGGTGTATATTGCATAA 57.085 29.630 0.00 0.00 0.00 1.90
436 462 6.826741 GGAACTAGAAAAGGGTGTATATTGCA 59.173 38.462 0.00 0.00 0.00 4.08
437 463 7.054751 AGGAACTAGAAAAGGGTGTATATTGC 58.945 38.462 0.00 0.00 36.02 3.56
438 464 7.438459 CGAGGAACTAGAAAAGGGTGTATATTG 59.562 40.741 0.00 0.00 41.55 1.90
439 465 7.343833 TCGAGGAACTAGAAAAGGGTGTATATT 59.656 37.037 0.00 0.00 41.55 1.28
440 466 6.837568 TCGAGGAACTAGAAAAGGGTGTATAT 59.162 38.462 0.00 0.00 41.55 0.86
444 470 3.006644 GTCGAGGAACTAGAAAAGGGTGT 59.993 47.826 0.00 0.00 42.75 4.16
445 471 3.006537 TGTCGAGGAACTAGAAAAGGGTG 59.993 47.826 0.00 0.00 42.75 4.61
447 473 3.955650 TGTCGAGGAACTAGAAAAGGG 57.044 47.619 0.00 0.00 42.75 3.95
448 474 4.884247 AGTTGTCGAGGAACTAGAAAAGG 58.116 43.478 7.80 0.00 42.75 3.11
449 475 5.177696 CCAAGTTGTCGAGGAACTAGAAAAG 59.822 44.000 9.60 0.00 42.75 2.27
450 476 5.054477 CCAAGTTGTCGAGGAACTAGAAAA 58.946 41.667 9.60 0.00 42.75 2.29
451 477 4.502604 CCCAAGTTGTCGAGGAACTAGAAA 60.503 45.833 9.60 0.00 42.75 2.52
452 478 3.006537 CCCAAGTTGTCGAGGAACTAGAA 59.993 47.826 9.60 0.00 42.75 2.10
454 480 2.353803 CCCCAAGTTGTCGAGGAACTAG 60.354 54.545 9.60 5.58 41.55 2.57
457 483 0.605589 CCCCCAAGTTGTCGAGGAAC 60.606 60.000 1.45 0.00 0.00 3.62
458 484 1.758592 CCCCCAAGTTGTCGAGGAA 59.241 57.895 1.45 0.00 0.00 3.36
459 485 2.890766 GCCCCCAAGTTGTCGAGGA 61.891 63.158 1.45 0.00 0.00 3.71
461 487 2.725203 TTCGCCCCCAAGTTGTCGAG 62.725 60.000 1.45 0.00 0.00 4.04
463 489 1.241315 ATTTCGCCCCCAAGTTGTCG 61.241 55.000 1.45 0.45 0.00 4.35
464 490 0.243636 CATTTCGCCCCCAAGTTGTC 59.756 55.000 1.45 0.00 0.00 3.18
466 492 1.079888 GCATTTCGCCCCCAAGTTG 60.080 57.895 0.00 0.00 32.94 3.16
467 493 2.635443 CGCATTTCGCCCCCAAGTT 61.635 57.895 0.00 0.00 37.30 2.66
469 495 3.825611 CCGCATTTCGCCCCCAAG 61.826 66.667 0.00 0.00 37.30 3.61
470 496 4.352607 TCCGCATTTCGCCCCCAA 62.353 61.111 0.00 0.00 37.30 4.12
471 497 4.794648 CTCCGCATTTCGCCCCCA 62.795 66.667 0.00 0.00 37.30 4.96
472 498 4.796495 ACTCCGCATTTCGCCCCC 62.796 66.667 0.00 0.00 37.30 5.40
473 499 3.202706 GACTCCGCATTTCGCCCC 61.203 66.667 0.00 0.00 37.30 5.80
474 500 3.564027 CGACTCCGCATTTCGCCC 61.564 66.667 0.00 0.00 37.30 6.13
476 502 1.352156 AACTCGACTCCGCATTTCGC 61.352 55.000 0.00 0.00 36.73 4.70
477 503 1.068474 AAACTCGACTCCGCATTTCG 58.932 50.000 0.00 0.00 35.37 3.46
479 505 1.535462 CCAAAACTCGACTCCGCATTT 59.465 47.619 0.00 0.00 35.37 2.32
480 506 1.156736 CCAAAACTCGACTCCGCATT 58.843 50.000 0.00 0.00 35.37 3.56
482 508 0.599204 GTCCAAAACTCGACTCCGCA 60.599 55.000 0.00 0.00 35.37 5.69
483 509 1.289800 GGTCCAAAACTCGACTCCGC 61.290 60.000 0.00 0.00 35.37 5.54
484 510 0.317479 AGGTCCAAAACTCGACTCCG 59.683 55.000 0.00 0.00 37.07 4.63
485 511 2.143925 CAAGGTCCAAAACTCGACTCC 58.856 52.381 0.00 0.00 0.00 3.85
486 512 2.143925 CCAAGGTCCAAAACTCGACTC 58.856 52.381 0.00 0.00 0.00 3.36
487 513 1.489230 ACCAAGGTCCAAAACTCGACT 59.511 47.619 0.00 0.00 0.00 4.18
488 514 1.963172 ACCAAGGTCCAAAACTCGAC 58.037 50.000 0.00 0.00 0.00 4.20
489 515 2.721425 AACCAAGGTCCAAAACTCGA 57.279 45.000 0.00 0.00 0.00 4.04
490 516 4.320935 CCAATAACCAAGGTCCAAAACTCG 60.321 45.833 0.00 0.00 0.00 4.18
491 517 4.587262 ACCAATAACCAAGGTCCAAAACTC 59.413 41.667 0.00 0.00 0.00 3.01
492 518 4.552674 ACCAATAACCAAGGTCCAAAACT 58.447 39.130 0.00 0.00 0.00 2.66
493 519 4.948341 ACCAATAACCAAGGTCCAAAAC 57.052 40.909 0.00 0.00 0.00 2.43
494 520 5.959583 AAACCAATAACCAAGGTCCAAAA 57.040 34.783 0.00 0.00 33.74 2.44
497 523 4.547671 TCAAAACCAATAACCAAGGTCCA 58.452 39.130 0.00 0.00 33.74 4.02
498 524 5.069914 ACTTCAAAACCAATAACCAAGGTCC 59.930 40.000 0.00 0.00 33.74 4.46
499 525 6.156748 ACTTCAAAACCAATAACCAAGGTC 57.843 37.500 0.00 0.00 33.74 3.85
501 527 5.510690 GGGACTTCAAAACCAATAACCAAGG 60.511 44.000 0.00 0.00 0.00 3.61
502 528 5.069781 TGGGACTTCAAAACCAATAACCAAG 59.930 40.000 0.00 0.00 0.00 3.61
504 530 4.547671 TGGGACTTCAAAACCAATAACCA 58.452 39.130 0.00 0.00 0.00 3.67
505 531 5.163395 TGTTGGGACTTCAAAACCAATAACC 60.163 40.000 0.00 0.00 44.04 2.85
506 532 5.908341 TGTTGGGACTTCAAAACCAATAAC 58.092 37.500 0.00 0.00 44.04 1.89
507 533 6.546428 TTGTTGGGACTTCAAAACCAATAA 57.454 33.333 0.00 0.00 44.04 1.40
508 534 6.546428 TTTGTTGGGACTTCAAAACCAATA 57.454 33.333 0.00 0.00 44.04 1.90
510 536 4.891992 TTTGTTGGGACTTCAAAACCAA 57.108 36.364 0.00 0.00 40.44 3.67
513 539 9.715123 CAAAATATTTTGTTGGGACTTCAAAAC 57.285 29.630 26.14 0.00 41.12 2.43
531 1661 6.906901 TGAGTCCTAGGTACTCCCAAAATATT 59.093 38.462 25.80 0.00 42.24 1.28
532 1662 6.449956 TGAGTCCTAGGTACTCCCAAAATAT 58.550 40.000 25.80 2.31 42.24 1.28
534 1664 4.695606 TGAGTCCTAGGTACTCCCAAAAT 58.304 43.478 25.80 0.99 42.24 1.82
535 1665 4.136341 TGAGTCCTAGGTACTCCCAAAA 57.864 45.455 25.80 12.91 42.24 2.44
540 1670 5.829062 TCTAGATGAGTCCTAGGTACTCC 57.171 47.826 25.80 17.10 42.24 3.85
593 1723 9.814899 TGACATGAATTGTATCTGTTTTTGTTT 57.185 25.926 0.00 0.00 39.18 2.83
594 1724 9.467258 CTGACATGAATTGTATCTGTTTTTGTT 57.533 29.630 0.00 0.00 39.18 2.83
595 1725 7.596248 GCTGACATGAATTGTATCTGTTTTTGT 59.404 33.333 0.00 0.00 39.18 2.83
596 1726 7.595875 TGCTGACATGAATTGTATCTGTTTTTG 59.404 33.333 0.00 0.00 39.18 2.44
604 1915 5.327091 GTGTGTGCTGACATGAATTGTATC 58.673 41.667 0.00 0.00 39.18 2.24
605 1916 4.142838 CGTGTGTGCTGACATGAATTGTAT 60.143 41.667 0.00 0.00 39.18 2.29
607 1918 2.031769 CGTGTGTGCTGACATGAATTGT 60.032 45.455 0.00 0.00 42.79 2.71
608 1919 2.577450 CGTGTGTGCTGACATGAATTG 58.423 47.619 0.00 0.00 35.21 2.32
609 1920 1.069022 GCGTGTGTGCTGACATGAATT 60.069 47.619 0.00 0.00 35.21 2.17
610 1921 0.518636 GCGTGTGTGCTGACATGAAT 59.481 50.000 0.00 0.00 35.21 2.57
615 1926 0.532640 AAGATGCGTGTGTGCTGACA 60.533 50.000 0.00 0.00 35.36 3.58
616 1927 1.428448 TAAGATGCGTGTGTGCTGAC 58.572 50.000 0.00 0.00 35.36 3.51
619 1930 3.595173 TGTTATAAGATGCGTGTGTGCT 58.405 40.909 0.00 0.00 35.36 4.40
620 1931 4.033932 TGATGTTATAAGATGCGTGTGTGC 59.966 41.667 0.00 0.00 0.00 4.57
623 1934 5.717038 TGTGATGTTATAAGATGCGTGTG 57.283 39.130 0.00 0.00 0.00 3.82
624 1935 6.925610 AATGTGATGTTATAAGATGCGTGT 57.074 33.333 0.00 0.00 0.00 4.49
625 1936 9.882996 ATTAAATGTGATGTTATAAGATGCGTG 57.117 29.630 0.00 0.00 0.00 5.34
626 1937 9.882996 CATTAAATGTGATGTTATAAGATGCGT 57.117 29.630 0.00 0.00 0.00 5.24
627 1938 9.333497 CCATTAAATGTGATGTTATAAGATGCG 57.667 33.333 0.00 0.00 0.00 4.73
638 1949 9.200817 ACCTTTTATAGCCATTAAATGTGATGT 57.799 29.630 0.00 0.00 0.00 3.06
639 1950 9.467258 CACCTTTTATAGCCATTAAATGTGATG 57.533 33.333 6.29 0.00 34.20 3.07
641 1952 8.815565 TCACCTTTTATAGCCATTAAATGTGA 57.184 30.769 9.38 9.38 36.67 3.58
647 1958 8.058847 ACCTCATTCACCTTTTATAGCCATTAA 58.941 33.333 0.00 0.00 0.00 1.40
649 1960 6.435164 ACCTCATTCACCTTTTATAGCCATT 58.565 36.000 0.00 0.00 0.00 3.16
691 2002 7.992754 ATTTCAGTTTTGCTAGAACTCATCT 57.007 32.000 0.00 0.00 42.48 2.90
702 2013 9.218440 CCCAACATAAAATATTTCAGTTTTGCT 57.782 29.630 0.10 0.00 0.00 3.91
703 2014 8.998377 ACCCAACATAAAATATTTCAGTTTTGC 58.002 29.630 0.10 0.00 0.00 3.68
706 2017 9.487790 CACACCCAACATAAAATATTTCAGTTT 57.512 29.630 0.10 0.00 0.00 2.66
707 2018 7.602265 GCACACCCAACATAAAATATTTCAGTT 59.398 33.333 0.10 4.40 0.00 3.16
708 2019 7.096551 GCACACCCAACATAAAATATTTCAGT 58.903 34.615 0.10 0.00 0.00 3.41
709 2020 6.253298 CGCACACCCAACATAAAATATTTCAG 59.747 38.462 0.10 0.00 0.00 3.02
710 2021 6.096036 CGCACACCCAACATAAAATATTTCA 58.904 36.000 0.10 0.00 0.00 2.69
711 2022 5.518487 CCGCACACCCAACATAAAATATTTC 59.482 40.000 0.10 0.00 0.00 2.17
712 2023 5.186021 TCCGCACACCCAACATAAAATATTT 59.814 36.000 0.00 0.00 0.00 1.40
713 2024 4.707448 TCCGCACACCCAACATAAAATATT 59.293 37.500 0.00 0.00 0.00 1.28
714 2025 4.274147 TCCGCACACCCAACATAAAATAT 58.726 39.130 0.00 0.00 0.00 1.28
715 2026 3.687125 TCCGCACACCCAACATAAAATA 58.313 40.909 0.00 0.00 0.00 1.40
716 2027 2.491693 CTCCGCACACCCAACATAAAAT 59.508 45.455 0.00 0.00 0.00 1.82
717 2028 1.883275 CTCCGCACACCCAACATAAAA 59.117 47.619 0.00 0.00 0.00 1.52
718 2029 1.202830 ACTCCGCACACCCAACATAAA 60.203 47.619 0.00 0.00 0.00 1.40
719 2030 0.398696 ACTCCGCACACCCAACATAA 59.601 50.000 0.00 0.00 0.00 1.90
720 2031 0.398696 AACTCCGCACACCCAACATA 59.601 50.000 0.00 0.00 0.00 2.29
721 2032 1.150536 AACTCCGCACACCCAACAT 59.849 52.632 0.00 0.00 0.00 2.71
722 2033 1.821759 CAACTCCGCACACCCAACA 60.822 57.895 0.00 0.00 0.00 3.33
723 2034 2.551912 CCAACTCCGCACACCCAAC 61.552 63.158 0.00 0.00 0.00 3.77
724 2035 2.203280 CCAACTCCGCACACCCAA 60.203 61.111 0.00 0.00 0.00 4.12
725 2036 4.947147 GCCAACTCCGCACACCCA 62.947 66.667 0.00 0.00 0.00 4.51
755 2066 3.667960 GCATCGATTTTTCTGCGAGTGTT 60.668 43.478 0.00 0.00 37.48 3.32
757 2068 2.094894 AGCATCGATTTTTCTGCGAGTG 59.905 45.455 0.00 0.00 39.57 3.51
763 2099 2.595536 CGGCAAAGCATCGATTTTTCTG 59.404 45.455 0.00 0.00 0.00 3.02
764 2100 2.415893 CCGGCAAAGCATCGATTTTTCT 60.416 45.455 0.00 0.00 0.00 2.52
765 2101 1.919918 CCGGCAAAGCATCGATTTTTC 59.080 47.619 0.00 0.00 0.00 2.29
770 2106 1.066002 CAAATCCGGCAAAGCATCGAT 59.934 47.619 0.00 0.00 0.00 3.59
779 2115 0.958382 CGGGAACTCAAATCCGGCAA 60.958 55.000 0.00 0.00 38.93 4.52
794 2130 2.431454 CGATCCATGTCCACCGGGA 61.431 63.158 6.32 0.00 42.29 5.14
795 2131 2.108976 CGATCCATGTCCACCGGG 59.891 66.667 6.32 0.00 0.00 5.73
796 2132 2.588877 GCGATCCATGTCCACCGG 60.589 66.667 0.00 0.00 0.00 5.28
797 2133 2.588877 GGCGATCCATGTCCACCG 60.589 66.667 0.00 0.00 0.00 4.94
798 2134 0.679640 TTTGGCGATCCATGTCCACC 60.680 55.000 0.00 0.00 43.05 4.61
799 2135 1.392589 ATTTGGCGATCCATGTCCAC 58.607 50.000 0.00 0.00 43.05 4.02
801 2137 1.338020 GGAATTTGGCGATCCATGTCC 59.662 52.381 0.00 0.00 43.05 4.02
802 2138 2.023673 TGGAATTTGGCGATCCATGTC 58.976 47.619 0.00 0.00 43.05 3.06
803 2139 2.142356 TGGAATTTGGCGATCCATGT 57.858 45.000 0.00 0.00 43.05 3.21
804 2140 2.689471 TCTTGGAATTTGGCGATCCATG 59.311 45.455 0.00 1.69 42.53 3.66
805 2141 2.689983 GTCTTGGAATTTGGCGATCCAT 59.310 45.455 0.00 0.00 42.53 3.41
806 2142 2.091541 GTCTTGGAATTTGGCGATCCA 58.908 47.619 0.00 0.00 41.36 3.41
807 2143 2.369394 AGTCTTGGAATTTGGCGATCC 58.631 47.619 0.00 0.00 0.00 3.36
808 2144 3.191371 ACAAGTCTTGGAATTTGGCGATC 59.809 43.478 16.85 0.00 34.12 3.69
809 2145 3.157087 ACAAGTCTTGGAATTTGGCGAT 58.843 40.909 16.85 0.00 34.12 4.58
812 2148 2.802247 GCAACAAGTCTTGGAATTTGGC 59.198 45.455 16.85 0.94 34.12 4.52
877 2226 0.108233 GAGGAGCAGAGGTTGAGCTG 60.108 60.000 0.00 0.00 39.02 4.24
913 2262 1.040646 AAGTCAACGACAGAGCCAGA 58.959 50.000 0.00 0.00 34.60 3.86
988 2343 1.277273 GCCCATCATCGATGATCCAGA 59.723 52.381 32.92 11.07 45.23 3.86
989 2344 1.735386 GCCCATCATCGATGATCCAG 58.265 55.000 32.92 24.61 45.23 3.86
990 2345 0.037046 CGCCCATCATCGATGATCCA 60.037 55.000 32.92 12.18 45.23 3.41
991 2346 0.742281 CCGCCCATCATCGATGATCC 60.742 60.000 32.92 22.92 45.23 3.36
1247 2602 6.206180 AGAGGGGATGGATTTATTGGTTAG 57.794 41.667 0.00 0.00 0.00 2.34
1248 2603 5.074515 GGAGAGGGGATGGATTTATTGGTTA 59.925 44.000 0.00 0.00 0.00 2.85
1249 2604 4.140924 GGAGAGGGGATGGATTTATTGGTT 60.141 45.833 0.00 0.00 0.00 3.67
1256 2611 2.594536 TCAGGAGAGGGGATGGATTT 57.405 50.000 0.00 0.00 0.00 2.17
1262 2617 4.567987 AGTAAAGATCAGGAGAGGGGAT 57.432 45.455 0.00 0.00 0.00 3.85
1297 2656 3.287867 TCTTTCATGGAGATTCTGGGC 57.712 47.619 0.00 0.00 0.00 5.36
1483 2842 3.700831 GAGGACGCGAGGAGGAGGA 62.701 68.421 15.93 0.00 0.00 3.71
1565 2924 2.892640 CCACGGAGAAGCATCGGA 59.107 61.111 0.00 0.00 0.00 4.55
1739 3098 9.826574 GGATTCATACTGTAATTGTTGTAGGTA 57.173 33.333 0.00 0.00 0.00 3.08
1740 3099 8.548877 AGGATTCATACTGTAATTGTTGTAGGT 58.451 33.333 0.00 0.00 0.00 3.08
1741 3100 8.964476 AGGATTCATACTGTAATTGTTGTAGG 57.036 34.615 0.00 0.00 0.00 3.18
1742 3101 9.599866 TGAGGATTCATACTGTAATTGTTGTAG 57.400 33.333 0.00 0.00 0.00 2.74
1743 3102 9.599866 CTGAGGATTCATACTGTAATTGTTGTA 57.400 33.333 0.00 0.00 31.68 2.41
1758 3117 6.962182 TCATGGAAAGTAACTGAGGATTCAT 58.038 36.000 0.00 0.00 31.68 2.57
1975 3345 4.082523 CTGCCCGTCGACCACCAT 62.083 66.667 10.58 0.00 0.00 3.55
2046 3416 4.803426 CAGACCTCGGAGTGCGGC 62.803 72.222 3.57 0.00 0.00 6.53
2091 3461 0.539518 AAACAAGCCGGCCAGTTTTT 59.460 45.000 30.31 18.20 30.64 1.94
2100 3470 1.807142 GAAGGAGAAGAAACAAGCCGG 59.193 52.381 0.00 0.00 0.00 6.13
2101 3471 2.772287 AGAAGGAGAAGAAACAAGCCG 58.228 47.619 0.00 0.00 0.00 5.52
2102 3472 4.137543 TCAAGAAGGAGAAGAAACAAGCC 58.862 43.478 0.00 0.00 0.00 4.35
2103 3473 5.756849 CTTCAAGAAGGAGAAGAAACAAGC 58.243 41.667 1.86 0.00 42.95 4.01
2117 3487 0.946221 ACGTCGCTGCCTTCAAGAAG 60.946 55.000 2.83 2.83 38.14 2.85
2421 3792 4.357947 GGCGTCGACAGCACCAGA 62.358 66.667 25.67 0.00 36.08 3.86
2517 3888 3.390521 ACGGCCTTGATCTCGCCA 61.391 61.111 15.54 0.00 43.17 5.69
2592 3963 0.661020 GAACCTTGTGTCCAACCACG 59.339 55.000 0.00 0.00 38.20 4.94
2651 4040 0.248843 TGAAATTTCAATGCCGGCCC 59.751 50.000 26.77 0.00 33.55 5.80
2681 4071 3.453717 AGCTCTCATTTCAGCACTGGATA 59.546 43.478 0.00 0.00 38.18 2.59
2682 4072 2.239150 AGCTCTCATTTCAGCACTGGAT 59.761 45.455 0.00 0.00 38.18 3.41
2683 4073 1.627329 AGCTCTCATTTCAGCACTGGA 59.373 47.619 0.00 0.00 38.18 3.86
2684 4074 2.110901 AGCTCTCATTTCAGCACTGG 57.889 50.000 0.00 0.00 38.18 4.00
2685 4075 3.336468 AGAAGCTCTCATTTCAGCACTG 58.664 45.455 0.00 0.00 38.18 3.66
2686 4076 3.699411 AGAAGCTCTCATTTCAGCACT 57.301 42.857 0.00 0.00 38.18 4.40
2844 4234 2.881111 TCCCGTCGATCTCTCCATAT 57.119 50.000 0.00 0.00 0.00 1.78
2864 4254 2.702788 TTCCCGACGTAGATGCGCA 61.703 57.895 14.96 14.96 34.88 6.09
2954 4344 0.033504 ACTTCATCGGTCAAGCACGT 59.966 50.000 0.00 0.00 0.00 4.49
2964 4355 7.381744 GTTTTCTTTCTCAAAACTTCATCGG 57.618 36.000 1.62 0.00 39.60 4.18
3019 4410 1.446272 GGAGACGCCTTTCAGACCG 60.446 63.158 0.00 0.00 0.00 4.79
3037 4428 1.217585 CGCAGATCACGTAGCCCATG 61.218 60.000 0.00 0.00 0.00 3.66
3040 4431 1.589196 GTCGCAGATCACGTAGCCC 60.589 63.158 7.86 0.00 40.67 5.19
3073 4464 2.036089 GTCGTCTGAGAGGGAAAACACT 59.964 50.000 1.99 0.00 0.00 3.55
3079 4470 1.251527 GGCAGTCGTCTGAGAGGGAA 61.252 60.000 14.02 0.00 43.76 3.97
3082 4473 2.487428 CGGCAGTCGTCTGAGAGG 59.513 66.667 14.02 0.00 43.76 3.69
3115 4506 2.964389 GCCAGCTCTCGAATCGCC 60.964 66.667 0.00 0.00 0.00 5.54
3227 4618 1.513622 GGAAGAGCTCCGAGTGGAC 59.486 63.158 10.93 0.00 40.17 4.02
3718 5109 2.625823 GCTTTTAGTGGCAGCGGCA 61.626 57.895 11.88 5.90 43.71 5.69
3719 5110 2.179267 GCTTTTAGTGGCAGCGGC 59.821 61.111 0.00 0.00 40.13 6.53
3799 5190 2.743928 GCAACCGAGTGCTCAGGG 60.744 66.667 12.22 4.12 41.51 4.45
3909 5300 0.674581 TGAAGCAGGCATCACGGAAG 60.675 55.000 0.00 0.00 0.00 3.46
3911 5302 0.462581 GATGAAGCAGGCATCACGGA 60.463 55.000 0.86 0.00 41.32 4.69
3915 5306 0.812811 GCTCGATGAAGCAGGCATCA 60.813 55.000 1.38 1.38 41.66 3.07
3917 5308 0.814410 CAGCTCGATGAAGCAGGCAT 60.814 55.000 0.00 0.00 45.00 4.40
3918 5309 1.449070 CAGCTCGATGAAGCAGGCA 60.449 57.895 0.00 0.00 45.00 4.75
4019 5411 7.773690 ACAAATTCAGTCAACTTACCTGTAACT 59.226 33.333 0.00 0.00 0.00 2.24
4020 5412 7.927048 ACAAATTCAGTCAACTTACCTGTAAC 58.073 34.615 0.00 0.00 0.00 2.50
4021 5413 9.616156 TTACAAATTCAGTCAACTTACCTGTAA 57.384 29.630 0.00 0.00 0.00 2.41
4022 5414 9.048446 GTTACAAATTCAGTCAACTTACCTGTA 57.952 33.333 0.00 0.00 0.00 2.74
4023 5415 7.773690 AGTTACAAATTCAGTCAACTTACCTGT 59.226 33.333 0.00 0.00 0.00 4.00
4024 5416 8.154649 AGTTACAAATTCAGTCAACTTACCTG 57.845 34.615 0.00 0.00 0.00 4.00
4025 5417 8.621286 CAAGTTACAAATTCAGTCAACTTACCT 58.379 33.333 0.00 0.00 35.17 3.08
4026 5418 7.860872 CCAAGTTACAAATTCAGTCAACTTACC 59.139 37.037 0.00 0.00 35.17 2.85
4027 5419 7.860872 CCCAAGTTACAAATTCAGTCAACTTAC 59.139 37.037 0.00 0.00 35.17 2.34
4028 5420 7.558444 ACCCAAGTTACAAATTCAGTCAACTTA 59.442 33.333 0.00 0.00 35.17 2.24
4029 5421 6.379988 ACCCAAGTTACAAATTCAGTCAACTT 59.620 34.615 0.00 0.00 36.84 2.66
4048 5440 9.292195 TCTTTCCATAAAGTTAACTTACCCAAG 57.708 33.333 20.83 16.27 42.36 3.61
4096 5488 1.482593 AGATCGAACGGCCATTCTTCT 59.517 47.619 10.27 8.82 0.00 2.85
4127 5519 3.509442 AGATCCAATGGACCTTGCAAAA 58.491 40.909 3.09 0.00 32.98 2.44
4128 5520 3.173953 AGATCCAATGGACCTTGCAAA 57.826 42.857 3.09 0.00 32.98 3.68
4129 5521 2.905415 AGATCCAATGGACCTTGCAA 57.095 45.000 3.09 0.00 32.98 4.08
4130 5522 2.905415 AAGATCCAATGGACCTTGCA 57.095 45.000 8.38 0.00 33.60 4.08
4132 5524 8.790718 CATTAGATTAAGATCCAATGGACCTTG 58.209 37.037 19.00 0.00 36.05 3.61
4133 5525 8.930846 CATTAGATTAAGATCCAATGGACCTT 57.069 34.615 14.27 14.27 39.27 3.50
4151 5543 9.530633 GTAAGTCGATGTTCTTAACCATTAGAT 57.469 33.333 0.00 0.00 0.00 1.98
4157 5549 4.824289 GGGTAAGTCGATGTTCTTAACCA 58.176 43.478 18.13 0.00 46.96 3.67
4181 5573 9.589461 TGAAACCTAGACATACCCAAAATTTAA 57.411 29.630 0.00 0.00 0.00 1.52
4192 5584 5.123502 TGAGTCGACTGAAACCTAGACATAC 59.876 44.000 25.58 2.64 0.00 2.39
4194 5586 4.079970 TGAGTCGACTGAAACCTAGACAT 58.920 43.478 25.58 0.00 0.00 3.06
4195 5587 3.483421 TGAGTCGACTGAAACCTAGACA 58.517 45.455 25.58 7.52 0.00 3.41
4206 5598 3.567576 ATCACTTGACTGAGTCGACTG 57.432 47.619 25.58 12.39 34.95 3.51
4210 5602 6.975197 ACATGTTATATCACTTGACTGAGTCG 59.025 38.462 8.23 0.00 34.95 4.18
4264 5669 9.599866 TGAGATCTCACATTAAAATTCGTGTAT 57.400 29.630 21.67 0.00 34.14 2.29
4266 5671 7.905604 TGAGATCTCACATTAAAATTCGTGT 57.094 32.000 21.67 0.00 34.14 4.49
4282 5687 6.606234 TTGACACTATACTCGTGAGATCTC 57.394 41.667 16.21 16.21 40.84 2.75
4292 5697 8.191446 TGCTAAGTCTCAATTGACACTATACTC 58.809 37.037 15.62 5.92 39.27 2.59
4297 5702 6.868864 GTCTTGCTAAGTCTCAATTGACACTA 59.131 38.462 15.62 0.00 39.27 2.74
4298 5703 5.698545 GTCTTGCTAAGTCTCAATTGACACT 59.301 40.000 10.26 10.26 39.27 3.55
4300 5705 5.698089 CAGTCTTGCTAAGTCTCAATTGACA 59.302 40.000 3.38 0.00 39.27 3.58
4301 5706 5.698545 ACAGTCTTGCTAAGTCTCAATTGAC 59.301 40.000 3.38 0.00 37.23 3.18
4302 5707 5.858381 ACAGTCTTGCTAAGTCTCAATTGA 58.142 37.500 8.12 8.12 0.00 2.57
4304 5709 8.854614 ATTAACAGTCTTGCTAAGTCTCAATT 57.145 30.769 0.00 0.00 0.00 2.32
4305 5710 8.854614 AATTAACAGTCTTGCTAAGTCTCAAT 57.145 30.769 0.00 0.00 0.00 2.57
4306 5711 8.677148 AAATTAACAGTCTTGCTAAGTCTCAA 57.323 30.769 0.00 0.00 0.00 3.02
4307 5712 8.677148 AAAATTAACAGTCTTGCTAAGTCTCA 57.323 30.769 0.00 0.00 0.00 3.27
4308 5713 9.600646 GAAAAATTAACAGTCTTGCTAAGTCTC 57.399 33.333 0.00 0.00 0.00 3.36
4309 5714 8.283291 CGAAAAATTAACAGTCTTGCTAAGTCT 58.717 33.333 0.00 0.00 0.00 3.24
4310 5715 8.068380 ACGAAAAATTAACAGTCTTGCTAAGTC 58.932 33.333 0.00 0.00 0.00 3.01
4312 5717 7.149128 GCACGAAAAATTAACAGTCTTGCTAAG 60.149 37.037 0.00 0.00 32.48 2.18
4314 5719 6.140110 GCACGAAAAATTAACAGTCTTGCTA 58.860 36.000 0.00 0.00 32.48 3.49
4315 5720 4.976116 GCACGAAAAATTAACAGTCTTGCT 59.024 37.500 0.00 0.00 32.48 3.91
4316 5721 4.143824 CGCACGAAAAATTAACAGTCTTGC 60.144 41.667 0.00 0.00 32.03 4.01
4324 5746 3.961240 TCAACGTCGCACGAAAAATTAAC 59.039 39.130 14.18 0.00 46.05 2.01
4329 5751 1.593469 TCATCAACGTCGCACGAAAAA 59.407 42.857 14.18 0.02 46.05 1.94
4335 5757 8.981370 TTTTTATATATTCATCAACGTCGCAC 57.019 30.769 0.00 0.00 0.00 5.34
4357 5779 2.972021 CCCTTGGGTTGGTCTCATTTTT 59.028 45.455 0.00 0.00 0.00 1.94
4358 5780 2.608623 CCCTTGGGTTGGTCTCATTTT 58.391 47.619 0.00 0.00 0.00 1.82
4359 5781 1.827245 GCCCTTGGGTTGGTCTCATTT 60.827 52.381 7.61 0.00 0.00 2.32
4360 5782 0.251787 GCCCTTGGGTTGGTCTCATT 60.252 55.000 7.61 0.00 0.00 2.57
4361 5783 1.142688 AGCCCTTGGGTTGGTCTCAT 61.143 55.000 7.61 0.00 0.00 2.90
4362 5784 0.474854 TAGCCCTTGGGTTGGTCTCA 60.475 55.000 7.61 0.00 34.28 3.27
4363 5785 0.696501 TTAGCCCTTGGGTTGGTCTC 59.303 55.000 7.61 0.00 34.28 3.36
4364 5786 0.404426 GTTAGCCCTTGGGTTGGTCT 59.596 55.000 7.61 0.00 34.28 3.85
4365 5787 0.611062 GGTTAGCCCTTGGGTTGGTC 60.611 60.000 7.61 0.00 34.28 4.02
4366 5788 1.463375 GGTTAGCCCTTGGGTTGGT 59.537 57.895 7.61 0.00 34.28 3.67
4367 5789 4.434483 GGTTAGCCCTTGGGTTGG 57.566 61.111 7.61 0.00 34.28 3.77
4377 5799 0.679960 AATGCCAACGAGGGTTAGCC 60.680 55.000 0.00 0.00 39.61 3.93
4378 5800 1.173913 AAATGCCAACGAGGGTTAGC 58.826 50.000 0.00 0.00 40.57 3.09
4379 5801 5.576447 AAATAAATGCCAACGAGGGTTAG 57.424 39.130 0.00 0.00 38.09 2.34
4380 5802 7.446013 CCTATAAATAAATGCCAACGAGGGTTA 59.554 37.037 0.00 0.00 38.09 2.85
4381 5803 6.264518 CCTATAAATAAATGCCAACGAGGGTT 59.735 38.462 0.00 0.00 38.09 4.11
4382 5804 5.768164 CCTATAAATAAATGCCAACGAGGGT 59.232 40.000 0.00 0.00 38.09 4.34
4383 5805 6.001460 TCCTATAAATAAATGCCAACGAGGG 58.999 40.000 0.00 0.00 38.09 4.30
4384 5806 6.934645 TCTCCTATAAATAAATGCCAACGAGG 59.065 38.462 0.00 0.00 41.84 4.63
4385 5807 7.962964 TCTCCTATAAATAAATGCCAACGAG 57.037 36.000 0.00 0.00 0.00 4.18
4386 5808 8.617809 GTTTCTCCTATAAATAAATGCCAACGA 58.382 33.333 0.00 0.00 0.00 3.85
4387 5809 8.621286 AGTTTCTCCTATAAATAAATGCCAACG 58.379 33.333 0.00 0.00 0.00 4.10
4388 5810 9.952188 GAGTTTCTCCTATAAATAAATGCCAAC 57.048 33.333 0.00 0.00 0.00 3.77
4389 5811 9.131791 GGAGTTTCTCCTATAAATAAATGCCAA 57.868 33.333 8.38 0.00 46.41 4.52
4390 5812 8.691661 GGAGTTTCTCCTATAAATAAATGCCA 57.308 34.615 8.38 0.00 46.41 4.92
4405 5827 2.095252 GTGCTCGCGGAGTTTCTCC 61.095 63.158 6.13 5.79 46.44 3.71
4406 5828 2.095252 GGTGCTCGCGGAGTTTCTC 61.095 63.158 6.13 0.00 31.39 2.87
4407 5829 2.048127 GGTGCTCGCGGAGTTTCT 60.048 61.111 6.13 0.00 31.39 2.52
4408 5830 2.357034 TGGTGCTCGCGGAGTTTC 60.357 61.111 6.13 0.00 31.39 2.78
4409 5831 2.665185 GTGGTGCTCGCGGAGTTT 60.665 61.111 6.13 0.00 31.39 2.66
4416 5838 4.961511 TGGACACGTGGTGCTCGC 62.962 66.667 21.57 3.36 38.87 5.03
4417 5839 2.279851 TTGGACACGTGGTGCTCG 60.280 61.111 21.57 0.00 38.87 5.03
4418 5840 2.607892 GCTTGGACACGTGGTGCTC 61.608 63.158 21.57 7.97 38.87 4.26
4419 5841 2.591715 GCTTGGACACGTGGTGCT 60.592 61.111 21.57 0.00 38.87 4.40
4420 5842 3.660111 GGCTTGGACACGTGGTGC 61.660 66.667 21.57 14.91 36.98 5.01
4421 5843 3.345808 CGGCTTGGACACGTGGTG 61.346 66.667 21.57 5.88 39.75 4.17
4422 5844 4.619227 CCGGCTTGGACACGTGGT 62.619 66.667 21.57 5.35 42.00 4.16
4424 5846 4.308458 TCCCGGCTTGGACACGTG 62.308 66.667 15.48 15.48 42.00 4.49
4430 5852 1.072505 GTTCAAGTCCCGGCTTGGA 59.927 57.895 18.28 9.78 44.26 3.53
4431 5853 0.955919 GAGTTCAAGTCCCGGCTTGG 60.956 60.000 18.28 4.22 44.26 3.61
4432 5854 1.291877 CGAGTTCAAGTCCCGGCTTG 61.292 60.000 13.87 13.87 45.18 4.01
4433 5855 1.004918 CGAGTTCAAGTCCCGGCTT 60.005 57.895 0.00 0.00 0.00 4.35
4434 5856 2.657237 CGAGTTCAAGTCCCGGCT 59.343 61.111 0.00 0.00 0.00 5.52
4435 5857 2.434359 CCGAGTTCAAGTCCCGGC 60.434 66.667 0.00 0.00 33.47 6.13
4436 5858 2.264794 CCCGAGTTCAAGTCCCGG 59.735 66.667 0.00 0.00 39.85 5.73
4437 5859 1.374252 CACCCGAGTTCAAGTCCCG 60.374 63.158 0.00 0.00 0.00 5.14
4438 5860 1.003718 CCACCCGAGTTCAAGTCCC 60.004 63.158 0.00 0.00 0.00 4.46
4439 5861 1.003718 CCCACCCGAGTTCAAGTCC 60.004 63.158 0.00 0.00 0.00 3.85
4440 5862 1.671379 GCCCACCCGAGTTCAAGTC 60.671 63.158 0.00 0.00 0.00 3.01
4441 5863 2.147387 AGCCCACCCGAGTTCAAGT 61.147 57.895 0.00 0.00 0.00 3.16
4442 5864 1.672356 CAGCCCACCCGAGTTCAAG 60.672 63.158 0.00 0.00 0.00 3.02
4443 5865 2.429930 CAGCCCACCCGAGTTCAA 59.570 61.111 0.00 0.00 0.00 2.69
4444 5866 3.636231 CCAGCCCACCCGAGTTCA 61.636 66.667 0.00 0.00 0.00 3.18
4452 5874 3.455469 GATTGCTGCCAGCCCACC 61.455 66.667 15.29 0.00 41.51 4.61
4453 5875 2.362120 AGATTGCTGCCAGCCCAC 60.362 61.111 15.29 5.15 41.51 4.61
4454 5876 2.044650 GAGATTGCTGCCAGCCCA 60.045 61.111 15.29 0.45 41.51 5.36
4455 5877 2.044650 TGAGATTGCTGCCAGCCC 60.045 61.111 15.29 3.43 41.51 5.19
4456 5878 2.772691 GCTGAGATTGCTGCCAGCC 61.773 63.158 15.29 0.00 44.39 4.85
4457 5879 2.799371 GCTGAGATTGCTGCCAGC 59.201 61.111 10.45 10.45 44.00 4.85
4458 5880 4.639776 AGCTGAGATTGCTGCCAG 57.360 55.556 0.00 0.00 39.56 4.85
4463 5885 1.077644 CTGGGCAGCTGAGATTGCT 60.078 57.895 20.43 0.00 42.06 3.91
4464 5886 1.375098 GACTGGGCAGCTGAGATTGC 61.375 60.000 20.43 0.23 39.56 3.56
4465 5887 0.035725 TGACTGGGCAGCTGAGATTG 60.036 55.000 20.43 5.27 0.00 2.67
4466 5888 0.694771 TTGACTGGGCAGCTGAGATT 59.305 50.000 20.43 0.00 0.00 2.40
4467 5889 0.035630 GTTGACTGGGCAGCTGAGAT 60.036 55.000 20.43 0.00 0.00 2.75
4468 5890 1.372683 GTTGACTGGGCAGCTGAGA 59.627 57.895 20.43 0.00 0.00 3.27
4469 5891 2.031516 CGTTGACTGGGCAGCTGAG 61.032 63.158 20.43 8.80 0.00 3.35
4470 5892 2.031012 CGTTGACTGGGCAGCTGA 59.969 61.111 20.43 0.00 0.00 4.26
4471 5893 3.052082 CCGTTGACTGGGCAGCTG 61.052 66.667 10.11 10.11 0.00 4.24
4472 5894 4.335647 CCCGTTGACTGGGCAGCT 62.336 66.667 0.00 0.00 40.47 4.24
4478 5900 2.410638 TTCGTCGACCCGTTGACTGG 62.411 60.000 10.58 0.08 40.90 4.00
4479 5901 0.595567 TTTCGTCGACCCGTTGACTG 60.596 55.000 10.58 7.04 40.90 3.51
4480 5902 0.318445 CTTTCGTCGACCCGTTGACT 60.318 55.000 10.58 0.00 40.90 3.41
4481 5903 0.595825 ACTTTCGTCGACCCGTTGAC 60.596 55.000 10.58 5.29 39.93 3.18
4482 5904 0.595567 CACTTTCGTCGACCCGTTGA 60.596 55.000 10.58 0.00 0.00 3.18
4483 5905 1.554042 CCACTTTCGTCGACCCGTTG 61.554 60.000 10.58 1.03 0.00 4.10
4484 5906 1.300388 CCACTTTCGTCGACCCGTT 60.300 57.895 10.58 0.00 0.00 4.44
4485 5907 1.737355 TTCCACTTTCGTCGACCCGT 61.737 55.000 10.58 0.00 0.00 5.28
4486 5908 1.007038 TTCCACTTTCGTCGACCCG 60.007 57.895 10.58 0.00 0.00 5.28
4487 5909 0.947660 GGTTCCACTTTCGTCGACCC 60.948 60.000 10.58 0.00 0.00 4.46
4488 5910 1.280206 CGGTTCCACTTTCGTCGACC 61.280 60.000 10.58 0.00 0.00 4.79
4489 5911 1.883725 GCGGTTCCACTTTCGTCGAC 61.884 60.000 5.18 5.18 0.00 4.20
4490 5912 1.662446 GCGGTTCCACTTTCGTCGA 60.662 57.895 0.00 0.00 0.00 4.20
4491 5913 2.851104 GCGGTTCCACTTTCGTCG 59.149 61.111 0.00 0.00 0.00 5.12
4492 5914 1.615107 CTCGCGGTTCCACTTTCGTC 61.615 60.000 6.13 0.00 0.00 4.20
4493 5915 1.663702 CTCGCGGTTCCACTTTCGT 60.664 57.895 6.13 0.00 0.00 3.85
4494 5916 2.380410 CCTCGCGGTTCCACTTTCG 61.380 63.158 6.13 0.00 0.00 3.46
4508 5930 3.800685 TTCCACACGTGCCACCTCG 62.801 63.158 17.22 0.00 0.00 4.63
4510 5932 1.525995 CTTTCCACACGTGCCACCT 60.526 57.895 17.22 0.00 0.00 4.00
4513 5935 0.249868 CTCTCTTTCCACACGTGCCA 60.250 55.000 17.22 0.00 0.00 4.92
4523 5945 6.547930 AACTAGGATGGTTACTCTCTTTCC 57.452 41.667 0.00 0.00 38.34 3.13
4524 5946 7.842982 AGAAACTAGGATGGTTACTCTCTTTC 58.157 38.462 0.00 0.00 39.61 2.62
4531 5953 7.342541 GGAGTTCTAGAAACTAGGATGGTTACT 59.657 40.741 6.78 0.00 39.61 2.24
4548 5970 5.389520 TCTACCATGATGGAGGAGTTCTAG 58.610 45.833 20.11 6.80 40.96 2.43
4561 5983 6.435277 ACAAGAAAAGCAACATCTACCATGAT 59.565 34.615 0.00 0.00 0.00 2.45
4564 5989 7.759489 TTACAAGAAAAGCAACATCTACCAT 57.241 32.000 0.00 0.00 0.00 3.55
4573 5998 4.968181 GTCGTCCTTTACAAGAAAAGCAAC 59.032 41.667 0.00 0.00 35.53 4.17
4593 6018 3.052036 CAACCTTTGCTTTCCAATGTCG 58.948 45.455 0.00 0.00 32.49 4.35
4630 6055 8.091449 AGCTACTTCTATAAACTACATGATGGC 58.909 37.037 0.00 0.00 0.00 4.40
4708 6133 1.731720 GCAGGAGCTCTGTCGATTTT 58.268 50.000 14.64 0.00 45.08 1.82
4731 6156 3.362888 GCACATTTGTTTTTGGACGATGC 60.363 43.478 0.00 0.00 0.00 3.91
4735 6160 4.516359 CAATGCACATTTGTTTTTGGACG 58.484 39.130 0.00 0.00 0.00 4.79
4739 6164 5.158101 TGAGCAATGCACATTTGTTTTTG 57.842 34.783 8.35 0.00 0.00 2.44
4773 6198 6.699575 ACTCAAACCAATAGTATGGCATTC 57.300 37.500 4.78 0.00 44.75 2.67
4777 6202 6.509418 TTCAACTCAAACCAATAGTATGGC 57.491 37.500 0.00 0.00 44.75 4.40
4778 6203 8.511604 AGATTCAACTCAAACCAATAGTATGG 57.488 34.615 0.00 0.00 46.38 2.74
4784 6209 7.110155 GGGACTAGATTCAACTCAAACCAATA 58.890 38.462 0.00 0.00 0.00 1.90
4787 6212 4.263331 GGGGACTAGATTCAACTCAAACCA 60.263 45.833 0.00 0.00 0.00 3.67
4798 6223 4.401837 ACTTGTAACGAGGGGACTAGATTC 59.598 45.833 0.00 0.00 44.43 2.52
4802 6227 4.012374 TGTACTTGTAACGAGGGGACTAG 58.988 47.826 0.00 0.00 44.43 2.57
4808 6233 5.068723 AGGATGTATGTACTTGTAACGAGGG 59.931 44.000 0.00 0.00 0.00 4.30
4812 6237 5.579119 TGCAAGGATGTATGTACTTGTAACG 59.421 40.000 0.00 0.00 41.65 3.18
4813 6238 6.978343 TGCAAGGATGTATGTACTTGTAAC 57.022 37.500 0.00 0.00 41.65 2.50
4872 6332 9.330063 ACAAGATTAATGATTCTATTCTCGCAA 57.670 29.630 0.00 0.00 0.00 4.85
4873 6333 8.893219 ACAAGATTAATGATTCTATTCTCGCA 57.107 30.769 0.00 0.00 0.00 5.10
4902 6362 4.701171 GCACACTACCTTCTAGTCACTACT 59.299 45.833 0.00 0.00 39.91 2.57
4907 6367 1.201647 GCGCACACTACCTTCTAGTCA 59.798 52.381 0.30 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.