Multiple sequence alignment - TraesCS5B01G386700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G386700 chr5B 100.000 5300 0 0 1 5300 565923607 565928906 0.000000e+00 9788.0
1 TraesCS5B01G386700 chr5B 95.890 219 9 0 363 581 568416883 568417101 6.530000e-94 355.0
2 TraesCS5B01G386700 chr5B 94.977 219 11 0 363 581 460675367 460675149 1.410000e-90 344.0
3 TraesCS5B01G386700 chr5B 95.146 103 5 0 4752 4854 166379181 166379079 4.250000e-36 163.0
4 TraesCS5B01G386700 chr5A 96.456 3104 78 11 2218 5300 580461880 580464972 0.000000e+00 5094.0
5 TraesCS5B01G386700 chr5A 93.761 1186 35 11 796 1971 580459896 580461052 0.000000e+00 1744.0
6 TraesCS5B01G386700 chr5A 95.518 357 16 0 8 364 580459275 580459631 5.950000e-159 571.0
7 TraesCS5B01G386700 chr5A 97.297 148 4 0 1994 2141 580461732 580461879 8.810000e-63 252.0
8 TraesCS5B01G386700 chr5A 89.231 195 13 2 617 811 580459683 580459869 2.470000e-58 237.0
9 TraesCS5B01G386700 chr5A 95.699 93 4 0 4755 4847 174594117 174594025 3.310000e-32 150.0
10 TraesCS5B01G386700 chr5A 100.000 37 0 0 580 616 580459630 580459666 9.520000e-08 69.4
11 TraesCS5B01G386700 chr5D 97.922 2310 41 3 2440 4743 460390551 460392859 0.000000e+00 3993.0
12 TraesCS5B01G386700 chr5D 93.145 1663 65 26 617 2247 460388771 460390416 0.000000e+00 2394.0
13 TraesCS5B01G386700 chr5D 98.201 556 9 1 4745 5300 460393024 460393578 0.000000e+00 970.0
14 TraesCS5B01G386700 chr5D 90.934 364 29 2 3 364 460388347 460388708 2.220000e-133 486.0
15 TraesCS5B01G386700 chr5D 93.421 228 15 0 354 581 469246948 469247175 6.570000e-89 339.0
16 TraesCS5B01G386700 chr5D 95.833 96 4 0 4752 4847 139440917 139441012 7.110000e-34 156.0
17 TraesCS5B01G386700 chr5D 97.619 42 1 0 580 621 460388707 460388748 7.360000e-09 73.1
18 TraesCS5B01G386700 chr3B 96.347 219 8 0 363 581 798436600 798436382 1.400000e-95 361.0
19 TraesCS5B01G386700 chr2A 95.045 222 11 0 361 582 763213823 763213602 3.040000e-92 350.0
20 TraesCS5B01G386700 chr7A 94.595 222 12 0 360 581 604403687 604403908 1.410000e-90 344.0
21 TraesCS5B01G386700 chr4A 93.191 235 14 2 355 589 563451413 563451181 1.410000e-90 344.0
22 TraesCS5B01G386700 chr1B 93.833 227 14 0 363 589 502092454 502092228 5.080000e-90 342.0
23 TraesCS5B01G386700 chr1B 93.506 231 13 2 362 591 626134041 626133812 5.080000e-90 342.0
24 TraesCS5B01G386700 chr1B 92.233 103 8 0 4752 4854 587275812 587275914 4.280000e-31 147.0
25 TraesCS5B01G386700 chr7B 94.792 96 5 0 4752 4847 162120813 162120908 3.310000e-32 150.0
26 TraesCS5B01G386700 chr6D 93.137 102 7 0 4748 4849 94768027 94768128 3.310000e-32 150.0
27 TraesCS5B01G386700 chr3A 93.204 103 5 2 4752 4852 470095777 470095675 3.310000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G386700 chr5B 565923607 565928906 5299 False 9788.00 9788 100.000000 1 5300 1 chr5B.!!$F1 5299
1 TraesCS5B01G386700 chr5A 580459275 580464972 5697 False 1327.90 5094 95.377167 8 5300 6 chr5A.!!$F1 5292
2 TraesCS5B01G386700 chr5D 460388347 460393578 5231 False 1583.22 3993 95.564200 3 5300 5 chr5D.!!$F3 5297

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 104 1.269413 GCTGGGCAATACATCATGCAC 60.269 52.381 0.00 0.0 46.16 4.57 F
1305 1413 1.006102 CTCCCCCGATTCGATTCCG 60.006 63.158 7.83 0.0 37.07 4.30 F
2333 3232 0.255890 TGCATTTGGGCCTCTAGGTC 59.744 55.000 4.53 0.0 39.63 3.85 F
2793 3700 0.391661 CTATGTCTGCTTGCCCACGT 60.392 55.000 0.00 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1991 2115 1.918868 GAAACCAAAGCTACGGCCCG 61.919 60.000 0.00 0.00 39.73 6.13 R
3126 4033 0.106015 GCACCATTAAGCCCCCAGAT 60.106 55.000 0.00 0.00 0.00 2.90 R
4158 5065 1.339727 CGGGCTAGTAAAAACCTGGCT 60.340 52.381 0.00 0.00 36.72 4.75 R
4743 5656 0.755686 ATCGGAGGGAGTTGCATCTC 59.244 55.000 15.21 15.21 0.00 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 1.269413 GCTGGGCAATACATCATGCAC 60.269 52.381 0.00 0.00 46.16 4.57
140 143 2.566746 AGATGAAGGAGTGGGTGGAAT 58.433 47.619 0.00 0.00 0.00 3.01
150 153 3.456277 GAGTGGGTGGAATCTAATGACCT 59.544 47.826 0.00 0.00 0.00 3.85
172 175 2.031560 GCAACATCGTCAATTCGCCATA 59.968 45.455 0.00 0.00 0.00 2.74
188 191 2.882229 GCCATAGTGCCCAGTTTGGTTA 60.882 50.000 12.23 0.00 35.91 2.85
262 265 5.836024 TGGTAGATATATTGTTCCCACCC 57.164 43.478 0.00 0.00 0.00 4.61
284 287 5.642063 CCCTGGCGTCGAACATATAAAATAT 59.358 40.000 0.00 0.00 0.00 1.28
364 367 9.562583 TTATCGCTAAACATCCATTTTTGTTAC 57.437 29.630 0.00 0.00 35.09 2.50
365 368 7.209471 TCGCTAAACATCCATTTTTGTTACT 57.791 32.000 0.00 0.00 35.09 2.24
366 369 8.325421 TCGCTAAACATCCATTTTTGTTACTA 57.675 30.769 0.00 0.00 35.09 1.82
367 370 8.231837 TCGCTAAACATCCATTTTTGTTACTAC 58.768 33.333 0.00 0.00 35.09 2.73
368 371 7.483691 CGCTAAACATCCATTTTTGTTACTACC 59.516 37.037 0.00 0.00 35.09 3.18
369 372 8.520351 GCTAAACATCCATTTTTGTTACTACCT 58.480 33.333 0.00 0.00 35.09 3.08
371 374 7.462571 AACATCCATTTTTGTTACTACCTCC 57.537 36.000 0.00 0.00 34.42 4.30
372 375 5.646360 ACATCCATTTTTGTTACTACCTCCG 59.354 40.000 0.00 0.00 0.00 4.63
373 376 5.231702 TCCATTTTTGTTACTACCTCCGT 57.768 39.130 0.00 0.00 0.00 4.69
374 377 5.240121 TCCATTTTTGTTACTACCTCCGTC 58.760 41.667 0.00 0.00 0.00 4.79
375 378 5.012354 TCCATTTTTGTTACTACCTCCGTCT 59.988 40.000 0.00 0.00 0.00 4.18
376 379 6.211184 TCCATTTTTGTTACTACCTCCGTCTA 59.789 38.462 0.00 0.00 0.00 2.59
377 380 6.534079 CCATTTTTGTTACTACCTCCGTCTAG 59.466 42.308 0.00 0.00 0.00 2.43
378 381 5.649782 TTTTGTTACTACCTCCGTCTAGG 57.350 43.478 0.00 0.00 42.82 3.02
388 391 4.571372 CCTCCGTCTAGGTGAATAAGTC 57.429 50.000 0.00 0.00 41.99 3.01
389 392 3.952323 CCTCCGTCTAGGTGAATAAGTCA 59.048 47.826 0.00 0.00 41.99 3.41
390 393 4.585162 CCTCCGTCTAGGTGAATAAGTCAT 59.415 45.833 0.00 0.00 38.90 3.06
391 394 5.069251 CCTCCGTCTAGGTGAATAAGTCATT 59.931 44.000 0.00 0.00 38.90 2.57
392 395 6.145338 TCCGTCTAGGTGAATAAGTCATTC 57.855 41.667 0.00 0.00 40.27 2.67
393 396 4.976731 CCGTCTAGGTGAATAAGTCATTCG 59.023 45.833 0.00 0.00 45.25 3.34
400 403 5.697848 GTGAATAAGTCATTCGCGTAGTT 57.302 39.130 5.77 2.59 45.25 2.24
401 404 5.715264 GTGAATAAGTCATTCGCGTAGTTC 58.285 41.667 5.77 0.29 45.25 3.01
402 405 5.515626 GTGAATAAGTCATTCGCGTAGTTCT 59.484 40.000 5.77 0.00 45.25 3.01
403 406 6.690098 GTGAATAAGTCATTCGCGTAGTTCTA 59.310 38.462 5.77 0.00 45.25 2.10
404 407 6.910972 TGAATAAGTCATTCGCGTAGTTCTAG 59.089 38.462 5.77 0.00 45.25 2.43
405 408 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
406 409 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
407 410 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
408 411 3.011818 TCATTCGCGTAGTTCTAGGTCA 58.988 45.455 5.77 0.00 0.00 4.02
409 412 3.630769 TCATTCGCGTAGTTCTAGGTCAT 59.369 43.478 5.77 0.00 0.00 3.06
410 413 3.687572 TTCGCGTAGTTCTAGGTCATC 57.312 47.619 5.77 0.00 0.00 2.92
411 414 2.635714 TCGCGTAGTTCTAGGTCATCA 58.364 47.619 5.77 0.00 0.00 3.07
412 415 3.011818 TCGCGTAGTTCTAGGTCATCAA 58.988 45.455 5.77 0.00 0.00 2.57
413 416 3.630769 TCGCGTAGTTCTAGGTCATCAAT 59.369 43.478 5.77 0.00 0.00 2.57
414 417 4.097437 TCGCGTAGTTCTAGGTCATCAATT 59.903 41.667 5.77 0.00 0.00 2.32
415 418 4.804139 CGCGTAGTTCTAGGTCATCAATTT 59.196 41.667 0.00 0.00 0.00 1.82
416 419 5.276395 CGCGTAGTTCTAGGTCATCAATTTG 60.276 44.000 0.00 0.00 0.00 2.32
417 420 5.810587 GCGTAGTTCTAGGTCATCAATTTGA 59.189 40.000 0.75 0.75 0.00 2.69
418 421 6.019479 GCGTAGTTCTAGGTCATCAATTTGAG 60.019 42.308 5.21 0.00 0.00 3.02
419 422 6.477033 CGTAGTTCTAGGTCATCAATTTGAGG 59.523 42.308 4.71 4.71 0.00 3.86
420 423 6.627087 AGTTCTAGGTCATCAATTTGAGGA 57.373 37.500 9.55 9.55 34.53 3.71
421 424 7.205515 AGTTCTAGGTCATCAATTTGAGGAT 57.794 36.000 15.94 4.96 39.49 3.24
422 425 7.637511 AGTTCTAGGTCATCAATTTGAGGATT 58.362 34.615 15.94 10.52 39.49 3.01
423 426 8.112183 AGTTCTAGGTCATCAATTTGAGGATTT 58.888 33.333 15.94 10.22 39.49 2.17
424 427 9.396022 GTTCTAGGTCATCAATTTGAGGATTTA 57.604 33.333 15.94 10.72 39.49 1.40
425 428 9.973661 TTCTAGGTCATCAATTTGAGGATTTAA 57.026 29.630 15.94 5.47 39.49 1.52
426 429 9.973661 TCTAGGTCATCAATTTGAGGATTTAAA 57.026 29.630 15.94 0.00 39.49 1.52
545 548 8.968969 AGATAGTTAAATCGTCAACCTAGAACT 58.031 33.333 0.00 0.00 0.00 3.01
548 551 7.025963 AGTTAAATCGTCAACCTAGAACTACG 58.974 38.462 0.00 0.00 0.00 3.51
549 552 2.907910 TCGTCAACCTAGAACTACGC 57.092 50.000 0.00 0.00 0.00 4.42
550 553 2.153645 TCGTCAACCTAGAACTACGCA 58.846 47.619 0.00 0.00 0.00 5.24
551 554 2.553602 TCGTCAACCTAGAACTACGCAA 59.446 45.455 0.00 0.00 0.00 4.85
552 555 3.004629 TCGTCAACCTAGAACTACGCAAA 59.995 43.478 0.00 0.00 0.00 3.68
553 556 3.924686 CGTCAACCTAGAACTACGCAAAT 59.075 43.478 0.00 0.00 0.00 2.32
554 557 4.201589 CGTCAACCTAGAACTACGCAAATG 60.202 45.833 0.00 0.00 0.00 2.32
555 558 4.927425 GTCAACCTAGAACTACGCAAATGA 59.073 41.667 0.00 0.00 0.00 2.57
556 559 4.927425 TCAACCTAGAACTACGCAAATGAC 59.073 41.667 0.00 0.00 0.00 3.06
557 560 4.803098 ACCTAGAACTACGCAAATGACT 57.197 40.909 0.00 0.00 0.00 3.41
558 561 5.148651 ACCTAGAACTACGCAAATGACTT 57.851 39.130 0.00 0.00 0.00 3.01
559 562 6.276832 ACCTAGAACTACGCAAATGACTTA 57.723 37.500 0.00 0.00 0.00 2.24
560 563 6.875076 ACCTAGAACTACGCAAATGACTTAT 58.125 36.000 0.00 0.00 0.00 1.73
561 564 7.328737 ACCTAGAACTACGCAAATGACTTATT 58.671 34.615 0.00 0.00 0.00 1.40
562 565 7.491696 ACCTAGAACTACGCAAATGACTTATTC 59.508 37.037 0.00 0.00 0.00 1.75
563 566 7.491372 CCTAGAACTACGCAAATGACTTATTCA 59.509 37.037 0.00 0.00 39.11 2.57
564 567 7.061752 AGAACTACGCAAATGACTTATTCAC 57.938 36.000 0.00 0.00 36.92 3.18
565 568 5.796350 ACTACGCAAATGACTTATTCACC 57.204 39.130 0.00 0.00 36.92 4.02
566 569 3.740044 ACGCAAATGACTTATTCACCG 57.260 42.857 0.00 0.00 36.92 4.94
567 570 3.331150 ACGCAAATGACTTATTCACCGA 58.669 40.909 0.00 0.00 36.92 4.69
568 571 3.749088 ACGCAAATGACTTATTCACCGAA 59.251 39.130 0.00 0.00 36.92 4.30
569 572 4.214545 ACGCAAATGACTTATTCACCGAAA 59.785 37.500 0.00 0.00 36.92 3.46
570 573 4.553429 CGCAAATGACTTATTCACCGAAAC 59.447 41.667 0.00 0.00 36.92 2.78
571 574 4.553429 GCAAATGACTTATTCACCGAAACG 59.447 41.667 0.00 0.00 36.92 3.60
758 811 9.656323 AGTAGGGATCAACTATTTATGTACTCA 57.344 33.333 0.00 0.00 0.00 3.41
779 832 5.540911 TCAATTCATATGATCTGCAGCGTA 58.459 37.500 9.47 2.05 0.00 4.42
841 936 2.165301 GGCTGACCGTCGGATTTCG 61.165 63.158 20.51 3.37 40.90 3.46
1302 1410 1.070758 CACATCTCCCCCGATTCGATT 59.929 52.381 7.83 0.00 0.00 3.34
1305 1413 1.006102 CTCCCCCGATTCGATTCCG 60.006 63.158 7.83 0.00 37.07 4.30
1404 1512 1.055235 CGCAATCGTGTTCGTCGTC 59.945 57.895 0.00 0.00 38.33 4.20
1407 1515 1.256652 CAATCGTGTTCGTCGTCGAT 58.743 50.000 5.44 9.83 45.65 3.59
1485 1593 4.106925 GGGCTGCCTGAGAGGGTG 62.107 72.222 19.68 0.00 35.37 4.61
1610 1718 2.738846 CAGACAAGGTCGGTGAATTCTG 59.261 50.000 7.05 0.00 37.67 3.02
1612 1720 3.071023 AGACAAGGTCGGTGAATTCTGAA 59.929 43.478 7.05 0.00 37.67 3.02
1615 1723 4.827284 ACAAGGTCGGTGAATTCTGAATTT 59.173 37.500 16.14 1.53 0.00 1.82
1616 1724 5.156355 CAAGGTCGGTGAATTCTGAATTTG 58.844 41.667 16.14 7.83 0.00 2.32
1617 1725 4.398319 AGGTCGGTGAATTCTGAATTTGT 58.602 39.130 16.14 0.00 0.00 2.83
1618 1726 4.216257 AGGTCGGTGAATTCTGAATTTGTG 59.784 41.667 16.14 7.83 0.00 3.33
1619 1727 4.215399 GGTCGGTGAATTCTGAATTTGTGA 59.785 41.667 16.14 9.70 0.00 3.58
1620 1728 5.106157 GGTCGGTGAATTCTGAATTTGTGAT 60.106 40.000 16.14 0.00 0.00 3.06
1631 1742 9.636789 ATTCTGAATTTGTGATTGATCCTATCA 57.363 29.630 0.00 4.07 37.55 2.15
1646 1757 3.721575 TCCTATCATGGGGTGTTGCTTAT 59.278 43.478 0.00 0.00 0.00 1.73
1647 1758 4.910913 TCCTATCATGGGGTGTTGCTTATA 59.089 41.667 0.00 0.00 0.00 0.98
1648 1759 5.013079 TCCTATCATGGGGTGTTGCTTATAG 59.987 44.000 0.00 0.00 0.00 1.31
1649 1760 4.796110 ATCATGGGGTGTTGCTTATAGT 57.204 40.909 0.00 0.00 0.00 2.12
1650 1761 4.584638 TCATGGGGTGTTGCTTATAGTT 57.415 40.909 0.00 0.00 0.00 2.24
1652 1763 5.680619 TCATGGGGTGTTGCTTATAGTTAG 58.319 41.667 0.00 0.00 0.00 2.34
1653 1764 5.427157 TCATGGGGTGTTGCTTATAGTTAGA 59.573 40.000 0.00 0.00 0.00 2.10
1654 1765 5.968676 TGGGGTGTTGCTTATAGTTAGAT 57.031 39.130 0.00 0.00 0.00 1.98
1741 1858 4.404073 ACATTTAGTCCACTGTTTTTGCCA 59.596 37.500 0.00 0.00 0.00 4.92
1820 1938 6.029607 AGCATTGCACATATTGACTTAAACG 58.970 36.000 11.91 0.00 0.00 3.60
2065 2846 5.767665 TGTAAATTAAGGCTCTCAGTTTGCA 59.232 36.000 0.00 0.00 0.00 4.08
2078 2859 3.111098 CAGTTTGCAGTTGCTGAACTTC 58.889 45.455 17.54 0.00 40.68 3.01
2150 2931 9.144298 TGGTTAAACATAGGGTAATTGACAAAA 57.856 29.630 0.00 0.00 0.00 2.44
2154 2935 6.834168 ACATAGGGTAATTGACAAAAGTGG 57.166 37.500 0.00 0.00 0.00 4.00
2155 2936 6.548321 ACATAGGGTAATTGACAAAAGTGGA 58.452 36.000 0.00 0.00 0.00 4.02
2175 2956 3.438087 GGAATCATCATAATCCACCGCAG 59.562 47.826 0.00 0.00 32.08 5.18
2204 2985 2.488952 GCATCCTAAGTAGCTTGCTCC 58.511 52.381 0.00 0.00 31.26 4.70
2214 2995 2.998316 AGCTTGCTCCCTACATTCTC 57.002 50.000 0.00 0.00 0.00 2.87
2230 3011 6.867662 ACATTCTCAGTGACCTTAAAGTTG 57.132 37.500 0.00 0.00 0.00 3.16
2243 3024 1.897560 AAAGTTGTACTCTGCAGCCC 58.102 50.000 9.47 0.00 0.00 5.19
2256 3154 3.005472 TCTGCAGCCCTGTTATATACGAC 59.995 47.826 9.47 0.00 0.00 4.34
2259 3157 3.243771 GCAGCCCTGTTATATACGACTGT 60.244 47.826 0.00 0.00 0.00 3.55
2292 3191 6.525121 TGTCTTCTAAGATTGTTGTTGTCG 57.475 37.500 0.00 0.00 37.39 4.35
2307 3206 3.942115 TGTTGTCGGATGTTTGACTCAAA 59.058 39.130 0.00 0.00 36.10 2.69
2327 3226 1.260544 AGTTTCTGCATTTGGGCCTC 58.739 50.000 4.53 0.00 0.00 4.70
2328 3227 1.203100 AGTTTCTGCATTTGGGCCTCT 60.203 47.619 4.53 0.00 0.00 3.69
2329 3228 2.041620 AGTTTCTGCATTTGGGCCTCTA 59.958 45.455 4.53 0.00 0.00 2.43
2330 3229 2.424956 GTTTCTGCATTTGGGCCTCTAG 59.575 50.000 4.53 0.00 0.00 2.43
2331 3230 0.548031 TCTGCATTTGGGCCTCTAGG 59.452 55.000 4.53 0.00 38.53 3.02
2332 3231 0.257039 CTGCATTTGGGCCTCTAGGT 59.743 55.000 4.53 0.00 37.57 3.08
2333 3232 0.255890 TGCATTTGGGCCTCTAGGTC 59.744 55.000 4.53 0.00 39.63 3.85
2334 3233 0.255890 GCATTTGGGCCTCTAGGTCA 59.744 55.000 4.53 0.00 42.93 4.02
2349 3248 6.263412 TCTAGGTCACTAGGCTAGTAACAT 57.737 41.667 25.45 21.97 45.50 2.71
2375 3274 7.041167 TGCATATGCTCATGTCCATTAAACTAC 60.041 37.037 27.13 0.00 42.66 2.73
2399 3298 2.160205 GAGTCTGGCCCCTTTTTGTAC 58.840 52.381 0.00 0.00 0.00 2.90
2408 3307 4.142160 GGCCCCTTTTTGTACATGAGAATC 60.142 45.833 0.00 0.00 0.00 2.52
2409 3308 4.438744 GCCCCTTTTTGTACATGAGAATCG 60.439 45.833 0.00 0.00 38.61 3.34
2414 3313 8.028938 CCCTTTTTGTACATGAGAATCGAAAAT 58.971 33.333 0.00 0.00 38.61 1.82
2452 3359 4.574013 GCAAGATGGGACTTTCAGTATCTG 59.426 45.833 0.00 0.00 0.00 2.90
2461 3368 6.183360 GGGACTTTCAGTATCTGATCAGTGAT 60.183 42.308 21.92 4.98 40.39 3.06
2532 3439 6.484288 TCTGTTATTCAATTGGGTCAGTCAT 58.516 36.000 5.42 0.00 0.00 3.06
2598 3505 9.197694 ACTGATTTACTCTGTATAATTCATCGC 57.802 33.333 0.00 0.00 34.59 4.58
2714 3621 1.486310 ACCCATTGAAGCGCAGAGATA 59.514 47.619 11.47 0.00 0.00 1.98
2719 3626 3.680642 TTGAAGCGCAGAGATATTTGC 57.319 42.857 11.47 0.00 36.97 3.68
2793 3700 0.391661 CTATGTCTGCTTGCCCACGT 60.392 55.000 0.00 0.00 0.00 4.49
2910 3817 3.117474 TGGTTTTTACATCTGGTCCCACA 60.117 43.478 0.00 0.00 0.00 4.17
3070 3977 6.370994 AGACAGTGCATTAGTTCTTGATCTTG 59.629 38.462 0.00 0.00 0.00 3.02
3126 4033 6.096987 CAGAGCTTAGGTATCCAGTTGAAGTA 59.903 42.308 0.00 0.00 0.00 2.24
3234 4141 8.880750 GGTACTGATTACCTTAACATGAACTTC 58.119 37.037 0.00 0.00 46.42 3.01
3313 4220 2.290514 CCTTGCATCTCCCTTCACAGAA 60.291 50.000 0.00 0.00 0.00 3.02
3828 4735 3.738982 TGATGAAACTGCTTTCTTCCGA 58.261 40.909 10.12 0.00 38.74 4.55
4037 4944 5.059833 GTGGAGGAAACTTGGCTATCATAG 58.940 45.833 0.00 0.00 44.43 2.23
4158 5065 0.394762 GTGATCAGCATGGGAGCCAA 60.395 55.000 0.00 0.00 36.95 4.52
4227 5134 3.933955 CACAGCTTTCTGAAGGATCTGAG 59.066 47.826 11.95 3.40 42.95 3.35
4455 5362 3.788227 AACTGGCTGTACAGGATGAAA 57.212 42.857 23.95 0.00 42.75 2.69
4487 5394 9.834628 CATGTGGAATTAGTTACGTGTTATTTT 57.165 29.630 0.00 0.00 0.00 1.82
4493 5400 6.630444 TTAGTTACGTGTTATTTTTGGCCA 57.370 33.333 0.00 0.00 0.00 5.36
4561 5474 6.899393 TCTCCTTGATTTGTACATTTGCTT 57.101 33.333 0.00 0.00 0.00 3.91
4634 5547 6.996282 ACTGATGTTATTAATCTTTACCCCCG 59.004 38.462 0.00 0.00 0.00 5.73
4653 5566 1.416813 GACGAGCGTTGAGATGCCTG 61.417 60.000 0.00 0.00 38.61 4.85
4743 5656 9.146984 TGACACTATTTTAAGGAGTTAATGTCG 57.853 33.333 0.00 0.00 36.64 4.35
4750 5826 4.471904 AAGGAGTTAATGTCGAGATGCA 57.528 40.909 0.00 0.00 0.00 3.96
4777 5853 3.555956 CCTCCGATCCAAAATAAGTGTCG 59.444 47.826 0.00 0.00 0.00 4.35
4791 5867 4.795970 AAGTGTCGCAGTTTTGAACTAG 57.204 40.909 0.00 0.00 40.46 2.57
4824 5900 4.134563 ACCTTAGTTCAAAACTGCGACAT 58.865 39.130 2.65 0.00 42.84 3.06
4825 5901 4.024048 ACCTTAGTTCAAAACTGCGACATG 60.024 41.667 2.65 0.00 42.84 3.21
4953 6035 8.408601 ACATAACATCTGCATATTCCTTTTGAC 58.591 33.333 0.00 0.00 0.00 3.18
5204 6286 8.363390 TCAATAACTCAATGACAGATAGGCTAG 58.637 37.037 0.00 0.00 0.00 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 3.940852 TCATCTTGATGTCCATGAAACCG 59.059 43.478 10.01 0.00 33.42 4.44
140 143 3.056179 TGACGATGTTGCAGGTCATTAGA 60.056 43.478 0.00 0.00 34.71 2.10
150 153 0.167908 GGCGAATTGACGATGTTGCA 59.832 50.000 0.00 0.00 35.09 4.08
172 175 2.290960 GGAGATAACCAAACTGGGCACT 60.291 50.000 0.00 0.00 43.37 4.40
262 265 7.095816 TGTCATATTTTATATGTTCGACGCCAG 60.096 37.037 6.58 0.00 0.00 4.85
302 305 5.469760 CACACATTATTCCGGATGATTAGCA 59.530 40.000 4.15 0.00 0.00 3.49
367 370 3.952323 TGACTTATTCACCTAGACGGAGG 59.048 47.826 0.00 0.00 42.89 4.30
368 371 5.776173 ATGACTTATTCACCTAGACGGAG 57.224 43.478 0.00 0.00 36.92 4.63
369 372 5.220989 CGAATGACTTATTCACCTAGACGGA 60.221 44.000 0.00 0.00 44.42 4.69
370 373 4.976731 CGAATGACTTATTCACCTAGACGG 59.023 45.833 0.00 0.00 44.42 4.79
371 374 4.441415 GCGAATGACTTATTCACCTAGACG 59.559 45.833 0.00 0.00 44.42 4.18
372 375 4.441415 CGCGAATGACTTATTCACCTAGAC 59.559 45.833 0.00 0.00 44.42 2.59
373 376 4.097437 ACGCGAATGACTTATTCACCTAGA 59.903 41.667 15.93 0.00 44.42 2.43
374 377 4.360563 ACGCGAATGACTTATTCACCTAG 58.639 43.478 15.93 0.00 44.42 3.02
375 378 4.380841 ACGCGAATGACTTATTCACCTA 57.619 40.909 15.93 0.00 44.42 3.08
376 379 3.247006 ACGCGAATGACTTATTCACCT 57.753 42.857 15.93 0.00 44.42 4.00
377 380 4.110482 ACTACGCGAATGACTTATTCACC 58.890 43.478 15.93 0.00 44.42 4.02
378 381 5.515626 AGAACTACGCGAATGACTTATTCAC 59.484 40.000 15.93 0.00 44.42 3.18
379 382 5.647589 AGAACTACGCGAATGACTTATTCA 58.352 37.500 15.93 0.00 44.42 2.57
380 383 6.360148 CCTAGAACTACGCGAATGACTTATTC 59.640 42.308 15.93 3.24 41.46 1.75
381 384 6.183360 ACCTAGAACTACGCGAATGACTTATT 60.183 38.462 15.93 0.00 0.00 1.40
382 385 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
383 386 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
384 387 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
385 388 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
386 389 3.181503 TGACCTAGAACTACGCGAATGAC 60.182 47.826 15.93 0.66 0.00 3.06
387 390 3.011818 TGACCTAGAACTACGCGAATGA 58.988 45.455 15.93 0.00 0.00 2.57
388 391 3.416119 TGACCTAGAACTACGCGAATG 57.584 47.619 15.93 4.47 0.00 2.67
389 392 3.630769 TGATGACCTAGAACTACGCGAAT 59.369 43.478 15.93 0.00 0.00 3.34
390 393 3.011818 TGATGACCTAGAACTACGCGAA 58.988 45.455 15.93 0.00 0.00 4.70
391 394 2.635714 TGATGACCTAGAACTACGCGA 58.364 47.619 15.93 0.00 0.00 5.87
392 395 3.416119 TTGATGACCTAGAACTACGCG 57.584 47.619 3.53 3.53 0.00 6.01
393 396 5.810587 TCAAATTGATGACCTAGAACTACGC 59.189 40.000 0.00 0.00 0.00 4.42
394 397 6.477033 CCTCAAATTGATGACCTAGAACTACG 59.523 42.308 0.00 0.00 0.00 3.51
395 398 7.556844 TCCTCAAATTGATGACCTAGAACTAC 58.443 38.462 0.00 0.00 0.00 2.73
396 399 7.733773 TCCTCAAATTGATGACCTAGAACTA 57.266 36.000 0.00 0.00 0.00 2.24
397 400 6.627087 TCCTCAAATTGATGACCTAGAACT 57.373 37.500 0.00 0.00 0.00 3.01
398 401 7.872113 AATCCTCAAATTGATGACCTAGAAC 57.128 36.000 3.16 0.00 0.00 3.01
399 402 9.973661 TTAAATCCTCAAATTGATGACCTAGAA 57.026 29.630 3.16 0.00 0.00 2.10
400 403 9.973661 TTTAAATCCTCAAATTGATGACCTAGA 57.026 29.630 3.16 0.00 0.00 2.43
519 522 8.968969 AGTTCTAGGTTGACGATTTAACTATCT 58.031 33.333 0.00 0.00 0.00 1.98
522 525 8.177663 CGTAGTTCTAGGTTGACGATTTAACTA 58.822 37.037 0.00 0.00 32.20 2.24
523 526 7.025963 CGTAGTTCTAGGTTGACGATTTAACT 58.974 38.462 0.00 0.00 32.20 2.24
524 527 6.237411 GCGTAGTTCTAGGTTGACGATTTAAC 60.237 42.308 10.86 0.00 32.20 2.01
525 528 5.801947 GCGTAGTTCTAGGTTGACGATTTAA 59.198 40.000 10.86 0.00 32.20 1.52
526 529 5.106197 TGCGTAGTTCTAGGTTGACGATTTA 60.106 40.000 10.86 0.00 32.20 1.40
527 530 4.171754 GCGTAGTTCTAGGTTGACGATTT 58.828 43.478 10.86 0.00 32.20 2.17
528 531 3.192001 TGCGTAGTTCTAGGTTGACGATT 59.808 43.478 10.86 0.00 32.20 3.34
529 532 2.751259 TGCGTAGTTCTAGGTTGACGAT 59.249 45.455 10.86 0.00 32.20 3.73
530 533 2.153645 TGCGTAGTTCTAGGTTGACGA 58.846 47.619 10.86 0.00 32.20 4.20
531 534 2.624316 TGCGTAGTTCTAGGTTGACG 57.376 50.000 0.00 0.00 0.00 4.35
532 535 4.927425 TCATTTGCGTAGTTCTAGGTTGAC 59.073 41.667 0.00 0.00 0.00 3.18
533 536 4.927425 GTCATTTGCGTAGTTCTAGGTTGA 59.073 41.667 0.00 0.00 0.00 3.18
534 537 4.929808 AGTCATTTGCGTAGTTCTAGGTTG 59.070 41.667 0.00 0.00 0.00 3.77
535 538 5.148651 AGTCATTTGCGTAGTTCTAGGTT 57.851 39.130 0.00 0.00 0.00 3.50
536 539 4.803098 AGTCATTTGCGTAGTTCTAGGT 57.197 40.909 0.00 0.00 0.00 3.08
537 540 7.491372 TGAATAAGTCATTTGCGTAGTTCTAGG 59.509 37.037 0.00 0.00 0.00 3.02
538 541 8.321716 GTGAATAAGTCATTTGCGTAGTTCTAG 58.678 37.037 0.00 0.00 38.90 2.43
539 542 7.277098 GGTGAATAAGTCATTTGCGTAGTTCTA 59.723 37.037 0.00 0.00 38.90 2.10
540 543 6.092259 GGTGAATAAGTCATTTGCGTAGTTCT 59.908 38.462 0.00 0.00 38.90 3.01
541 544 6.248631 GGTGAATAAGTCATTTGCGTAGTTC 58.751 40.000 0.00 0.00 38.90 3.01
542 545 5.163893 CGGTGAATAAGTCATTTGCGTAGTT 60.164 40.000 0.00 0.00 38.90 2.24
543 546 4.328983 CGGTGAATAAGTCATTTGCGTAGT 59.671 41.667 0.00 0.00 38.90 2.73
544 547 4.565166 TCGGTGAATAAGTCATTTGCGTAG 59.435 41.667 0.00 0.00 38.90 3.51
545 548 4.496360 TCGGTGAATAAGTCATTTGCGTA 58.504 39.130 0.00 0.00 38.90 4.42
546 549 3.331150 TCGGTGAATAAGTCATTTGCGT 58.669 40.909 0.00 0.00 38.90 5.24
547 550 4.335082 TTCGGTGAATAAGTCATTTGCG 57.665 40.909 0.00 0.00 38.90 4.85
548 551 4.553429 CGTTTCGGTGAATAAGTCATTTGC 59.447 41.667 0.00 0.00 38.90 3.68
549 552 5.086058 CCGTTTCGGTGAATAAGTCATTTG 58.914 41.667 0.00 0.00 42.73 2.32
550 553 5.291293 CCGTTTCGGTGAATAAGTCATTT 57.709 39.130 0.00 0.00 42.73 2.32
551 554 4.939509 CCGTTTCGGTGAATAAGTCATT 57.060 40.909 0.00 0.00 42.73 2.57
565 568 2.540101 GCATGATACTTCCTCCGTTTCG 59.460 50.000 0.00 0.00 0.00 3.46
566 569 3.531538 TGCATGATACTTCCTCCGTTTC 58.468 45.455 0.00 0.00 0.00 2.78
567 570 3.627395 TGCATGATACTTCCTCCGTTT 57.373 42.857 0.00 0.00 0.00 3.60
568 571 3.845781 ATGCATGATACTTCCTCCGTT 57.154 42.857 0.00 0.00 0.00 4.44
569 572 3.389329 AGAATGCATGATACTTCCTCCGT 59.611 43.478 0.00 0.00 0.00 4.69
570 573 4.000331 AGAATGCATGATACTTCCTCCG 58.000 45.455 0.00 0.00 0.00 4.63
571 574 5.049818 CGAAAGAATGCATGATACTTCCTCC 60.050 44.000 0.00 0.00 0.00 4.30
572 575 5.755375 TCGAAAGAATGCATGATACTTCCTC 59.245 40.000 0.00 0.00 37.03 3.71
573 576 5.674525 TCGAAAGAATGCATGATACTTCCT 58.325 37.500 0.00 0.00 37.03 3.36
574 577 5.991328 TCGAAAGAATGCATGATACTTCC 57.009 39.130 0.00 0.00 37.03 3.46
576 579 9.941664 CTTTTATCGAAAGAATGCATGATACTT 57.058 29.630 0.00 1.44 46.24 2.24
577 580 8.562892 CCTTTTATCGAAAGAATGCATGATACT 58.437 33.333 0.00 0.00 46.24 2.12
578 581 7.805071 CCCTTTTATCGAAAGAATGCATGATAC 59.195 37.037 0.00 0.00 46.24 2.24
579 582 7.040478 CCCCTTTTATCGAAAGAATGCATGATA 60.040 37.037 0.00 0.00 46.24 2.15
580 583 6.239120 CCCCTTTTATCGAAAGAATGCATGAT 60.239 38.462 0.00 0.00 46.24 2.45
652 700 9.255304 GTTTCATTAATTTTAGTTTGCTCACCA 57.745 29.630 0.00 0.00 0.00 4.17
755 808 4.451435 ACGCTGCAGATCATATGAATTGAG 59.549 41.667 20.43 14.35 0.00 3.02
756 809 4.383173 ACGCTGCAGATCATATGAATTGA 58.617 39.130 20.43 7.45 0.00 2.57
757 810 4.744136 ACGCTGCAGATCATATGAATTG 57.256 40.909 20.43 11.81 0.00 2.32
758 811 6.404708 AGATACGCTGCAGATCATATGAATT 58.595 36.000 20.43 0.00 0.00 2.17
759 812 5.975282 AGATACGCTGCAGATCATATGAAT 58.025 37.500 20.43 0.00 0.00 2.57
760 813 5.397142 AGATACGCTGCAGATCATATGAA 57.603 39.130 20.43 0.00 0.00 2.57
761 814 5.397142 AAGATACGCTGCAGATCATATGA 57.603 39.130 20.43 8.10 0.00 2.15
770 823 2.417933 AGCTTTGAAAGATACGCTGCAG 59.582 45.455 10.11 10.11 0.00 4.41
802 897 0.471211 TCTCTGTCCGGTGGGTTTCT 60.471 55.000 0.00 0.00 33.83 2.52
804 899 1.481056 CCTCTCTGTCCGGTGGGTTT 61.481 60.000 0.00 0.00 33.83 3.27
841 936 2.202703 CGTCGGGACCGTTGGATC 60.203 66.667 10.90 0.00 40.74 3.36
1138 1246 1.956639 TAGGGGAGGATCGGGAGCAA 61.957 60.000 0.00 0.00 34.37 3.91
1233 1341 3.672295 GAAGGAGCAGGACCAGCGG 62.672 68.421 2.85 0.00 37.01 5.52
1302 1410 3.231736 GGGAATAGCTCGGCCGGA 61.232 66.667 27.83 11.38 0.00 5.14
1305 1413 2.111251 GTGGGGAATAGCTCGGCC 59.889 66.667 0.00 0.00 0.00 6.13
1446 1554 3.753434 ACGACCCTGAGCAGCTCG 61.753 66.667 17.81 11.89 34.92 5.03
1590 1698 2.632996 TCAGAATTCACCGACCTTGTCT 59.367 45.455 8.44 0.00 0.00 3.41
1610 1718 7.309621 CCCCATGATAGGATCAATCACAAATTC 60.310 40.741 11.06 0.00 43.50 2.17
1612 1720 6.014647 CCCCATGATAGGATCAATCACAAAT 58.985 40.000 11.06 0.00 43.50 2.32
1615 1723 3.982730 ACCCCATGATAGGATCAATCACA 59.017 43.478 11.06 0.00 43.50 3.58
1616 1724 4.202503 ACACCCCATGATAGGATCAATCAC 60.203 45.833 11.06 0.00 43.50 3.06
1617 1725 3.982730 ACACCCCATGATAGGATCAATCA 59.017 43.478 11.20 11.20 43.50 2.57
1618 1726 4.647564 ACACCCCATGATAGGATCAATC 57.352 45.455 0.00 0.00 43.50 2.67
1619 1727 4.733165 CAACACCCCATGATAGGATCAAT 58.267 43.478 0.00 0.00 43.50 2.57
1620 1728 3.688126 GCAACACCCCATGATAGGATCAA 60.688 47.826 0.00 0.00 43.50 2.57
1631 1742 5.968676 TCTAACTATAAGCAACACCCCAT 57.031 39.130 0.00 0.00 0.00 4.00
1654 1765 9.625747 TCTGTTTCACCAATGATAAGCATATAA 57.374 29.630 0.00 0.00 35.78 0.98
1666 1783 3.253921 TGCACTGATCTGTTTCACCAATG 59.746 43.478 1.95 0.00 0.00 2.82
1773 1891 6.758416 GCTTGGAATCAGAAACTGTTCTTTTT 59.242 34.615 0.00 0.00 41.55 1.94
1991 2115 1.918868 GAAACCAAAGCTACGGCCCG 61.919 60.000 0.00 0.00 39.73 6.13
2152 2933 3.181446 TGCGGTGGATTATGATGATTCCA 60.181 43.478 0.00 0.00 35.93 3.53
2153 2934 3.411446 TGCGGTGGATTATGATGATTCC 58.589 45.455 0.00 0.00 0.00 3.01
2154 2935 4.067896 ACTGCGGTGGATTATGATGATTC 58.932 43.478 0.00 0.00 0.00 2.52
2155 2936 3.817084 CACTGCGGTGGATTATGATGATT 59.183 43.478 18.43 0.00 39.59 2.57
2204 2985 6.702329 ACTTTAAGGTCACTGAGAATGTAGG 58.298 40.000 0.00 0.00 0.00 3.18
2214 2995 5.177696 GCAGAGTACAACTTTAAGGTCACTG 59.822 44.000 0.00 0.00 0.00 3.66
2230 3011 2.990066 ATAACAGGGCTGCAGAGTAC 57.010 50.000 20.43 3.60 0.00 2.73
2286 3185 4.545823 TTTGAGTCAAACATCCGACAAC 57.454 40.909 14.35 0.00 34.48 3.32
2292 3191 5.460091 GCAGAAACTTTTGAGTCAAACATCC 59.540 40.000 17.85 6.89 32.79 3.51
2307 3206 1.620323 GAGGCCCAAATGCAGAAACTT 59.380 47.619 0.00 0.00 0.00 2.66
2327 3226 5.278561 GCATGTTACTAGCCTAGTGACCTAG 60.279 48.000 20.32 12.66 42.63 3.02
2328 3227 4.583489 GCATGTTACTAGCCTAGTGACCTA 59.417 45.833 20.32 6.78 42.63 3.08
2329 3228 3.385111 GCATGTTACTAGCCTAGTGACCT 59.615 47.826 20.32 10.65 42.63 3.85
2330 3229 3.132289 TGCATGTTACTAGCCTAGTGACC 59.868 47.826 20.32 8.79 42.63 4.02
2331 3230 4.386867 TGCATGTTACTAGCCTAGTGAC 57.613 45.455 17.37 17.37 43.33 3.67
2332 3231 6.691508 CATATGCATGTTACTAGCCTAGTGA 58.308 40.000 14.69 3.21 39.81 3.41
2333 3232 5.349817 GCATATGCATGTTACTAGCCTAGTG 59.650 44.000 22.84 0.00 39.21 2.74
2334 3233 5.247110 AGCATATGCATGTTACTAGCCTAGT 59.753 40.000 28.62 9.74 45.16 2.57
2349 3248 5.829391 AGTTTAATGGACATGAGCATATGCA 59.171 36.000 28.62 10.37 45.16 3.96
2375 3274 2.411765 AAAAGGGGCCAGACTCACCG 62.412 60.000 4.39 0.00 0.00 4.94
2408 3307 8.737770 CTTGCTGTTCAAGTTTAAAATTTTCG 57.262 30.769 6.72 0.00 45.48 3.46
2422 3321 2.957402 AGTCCCATCTTGCTGTTCAA 57.043 45.000 0.00 0.00 0.00 2.69
2583 3490 5.234329 ACAGAAACGGCGATGAATTATACAG 59.766 40.000 16.62 0.00 0.00 2.74
2593 3500 2.540515 AGATACACAGAAACGGCGATG 58.459 47.619 16.62 9.26 0.00 3.84
2598 3505 4.113354 GCCTCTTAGATACACAGAAACGG 58.887 47.826 0.00 0.00 0.00 4.44
2714 3621 3.322828 ACATTCAGAAACAGGCAGCAAAT 59.677 39.130 0.00 0.00 0.00 2.32
2719 3626 4.778534 ATTCACATTCAGAAACAGGCAG 57.221 40.909 0.00 0.00 0.00 4.85
2910 3817 0.474184 CAAGTCCTGGACCCACTGTT 59.526 55.000 22.81 7.06 32.18 3.16
3070 3977 2.008329 CTGATCAAGAGAGCAAGCCAC 58.992 52.381 0.00 0.00 40.09 5.01
3126 4033 0.106015 GCACCATTAAGCCCCCAGAT 60.106 55.000 0.00 0.00 0.00 2.90
3234 4141 3.684305 TCACTACCTCAATCGTTGCATTG 59.316 43.478 0.00 0.00 35.39 2.82
3263 4170 2.162681 CACCACAAATCTTGACCTCCC 58.837 52.381 0.00 0.00 0.00 4.30
3313 4220 6.708949 TCTTTATCACTAACGGAGCTGTTTTT 59.291 34.615 0.00 0.00 33.32 1.94
3324 4231 7.414098 CCCTCACCAATTTCTTTATCACTAACG 60.414 40.741 0.00 0.00 0.00 3.18
3592 4499 2.914097 AACAGCAAGCCTGGCCAC 60.914 61.111 16.57 4.96 46.14 5.01
3828 4735 4.728860 ACTCCCTCCCTATTCAACATCAAT 59.271 41.667 0.00 0.00 0.00 2.57
4037 4944 6.314784 CGTAAGTTTTCATGATTTGGGTCTC 58.685 40.000 0.00 0.00 0.00 3.36
4158 5065 1.339727 CGGGCTAGTAAAAACCTGGCT 60.340 52.381 0.00 0.00 36.72 4.75
4227 5134 3.093717 ACATCGTCGGTGAATATGACC 57.906 47.619 13.53 0.00 0.00 4.02
4455 5362 5.187186 ACGTAACTAATTCCACATGGACTCT 59.813 40.000 0.00 0.00 45.39 3.24
4561 5474 3.338249 GCTTACATCAAACTGGAGCTGA 58.662 45.455 0.00 0.00 31.01 4.26
4634 5547 1.153745 AGGCATCTCAACGCTCGTC 60.154 57.895 0.00 0.00 0.00 4.20
4653 5566 9.450807 GATTTACTGCATATCAAATGTAACCAC 57.549 33.333 0.00 0.00 0.00 4.16
4743 5656 0.755686 ATCGGAGGGAGTTGCATCTC 59.244 55.000 15.21 15.21 0.00 2.75
4750 5826 4.227527 ACTTATTTTGGATCGGAGGGAGTT 59.772 41.667 0.00 0.00 0.00 3.01
4824 5900 7.888514 AATACTCCCTCCAATCCATAATACA 57.111 36.000 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.