Multiple sequence alignment - TraesCS5B01G386200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G386200 chr5B 100.000 3104 0 0 1 3104 565688277 565685174 0.000000e+00 5733
1 TraesCS5B01G386200 chr5B 90.751 1557 130 4 1035 2578 565546624 565545069 0.000000e+00 2065
2 TraesCS5B01G386200 chr5B 83.566 1716 236 34 874 2554 565512709 565511005 0.000000e+00 1565
3 TraesCS5B01G386200 chr5B 82.998 1294 194 20 1040 2315 565502780 565501495 0.000000e+00 1147
4 TraesCS5B01G386200 chr5B 83.466 1252 185 18 997 2234 565509163 565507920 0.000000e+00 1146
5 TraesCS5B01G386200 chr5B 84.636 1139 162 10 1040 2169 565493101 565491967 0.000000e+00 1122
6 TraesCS5B01G386200 chr5B 83.650 1211 178 16 959 2163 565537874 565536678 0.000000e+00 1122
7 TraesCS5B01G386200 chr5B 81.365 1143 194 16 997 2127 565154307 565153172 0.000000e+00 913
8 TraesCS5B01G386200 chr5B 90.356 674 56 4 1 665 234172676 234173349 0.000000e+00 876
9 TraesCS5B01G386200 chr5B 77.778 360 58 17 2608 2963 565545552 565545211 5.250000e-48 202
10 TraesCS5B01G386200 chr5D 82.555 1628 240 30 935 2546 460073151 460071552 0.000000e+00 1393
11 TraesCS5B01G386200 chr5D 83.206 1441 190 37 963 2388 460061716 460060313 0.000000e+00 1273
12 TraesCS5B01G386200 chr5D 86.767 665 80 5 12 669 438193170 438192507 0.000000e+00 734
13 TraesCS5B01G386200 chr5D 78.486 251 35 12 2631 2879 460060569 460060336 2.490000e-31 147
14 TraesCS5B01G386200 chr5A 86.007 1122 145 9 1041 2153 579325813 579326931 0.000000e+00 1192
15 TraesCS5B01G386200 chr5A 83.991 1268 174 19 1306 2554 580212752 580211495 0.000000e+00 1190
16 TraesCS5B01G386200 chr5A 82.640 1250 197 16 997 2234 580201312 580200071 0.000000e+00 1088
17 TraesCS5B01G386200 chr5A 83.871 775 115 4 1040 1805 579242685 579243458 0.000000e+00 730
18 TraesCS5B01G386200 chr5A 85.062 482 36 13 746 1224 580213198 580212750 2.820000e-125 459
19 TraesCS5B01G386200 chr5A 81.863 204 22 8 2631 2831 579244236 579244427 1.150000e-34 158
20 TraesCS5B01G386200 chr4B 92.388 670 40 7 1 660 12254916 12254248 0.000000e+00 944
21 TraesCS5B01G386200 chr4B 91.056 682 48 8 1 669 114953690 114953009 0.000000e+00 909
22 TraesCS5B01G386200 chr7B 90.075 665 56 7 1 661 14729324 14728666 0.000000e+00 854
23 TraesCS5B01G386200 chr3B 89.599 673 50 16 1 661 276853439 276852775 0.000000e+00 837
24 TraesCS5B01G386200 chr6B 88.788 660 63 4 21 671 105962064 105961407 0.000000e+00 798
25 TraesCS5B01G386200 chr1B 89.984 609 50 6 57 661 429705096 429704495 0.000000e+00 776
26 TraesCS5B01G386200 chr2D 86.815 675 82 4 1 669 275227315 275227988 0.000000e+00 747


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G386200 chr5B 565685174 565688277 3103 True 5733.0 5733 100.0000 1 3104 1 chr5B.!!$R5 3103
1 TraesCS5B01G386200 chr5B 565507920 565512709 4789 True 1355.5 1565 83.5160 874 2554 2 chr5B.!!$R6 1680
2 TraesCS5B01G386200 chr5B 565501495 565502780 1285 True 1147.0 1147 82.9980 1040 2315 1 chr5B.!!$R3 1275
3 TraesCS5B01G386200 chr5B 565545069 565546624 1555 True 1133.5 2065 84.2645 1035 2963 2 chr5B.!!$R7 1928
4 TraesCS5B01G386200 chr5B 565491967 565493101 1134 True 1122.0 1122 84.6360 1040 2169 1 chr5B.!!$R2 1129
5 TraesCS5B01G386200 chr5B 565536678 565537874 1196 True 1122.0 1122 83.6500 959 2163 1 chr5B.!!$R4 1204
6 TraesCS5B01G386200 chr5B 565153172 565154307 1135 True 913.0 913 81.3650 997 2127 1 chr5B.!!$R1 1130
7 TraesCS5B01G386200 chr5B 234172676 234173349 673 False 876.0 876 90.3560 1 665 1 chr5B.!!$F1 664
8 TraesCS5B01G386200 chr5D 460071552 460073151 1599 True 1393.0 1393 82.5550 935 2546 1 chr5D.!!$R2 1611
9 TraesCS5B01G386200 chr5D 438192507 438193170 663 True 734.0 734 86.7670 12 669 1 chr5D.!!$R1 657
10 TraesCS5B01G386200 chr5D 460060313 460061716 1403 True 710.0 1273 80.8460 963 2879 2 chr5D.!!$R3 1916
11 TraesCS5B01G386200 chr5A 579325813 579326931 1118 False 1192.0 1192 86.0070 1041 2153 1 chr5A.!!$F1 1112
12 TraesCS5B01G386200 chr5A 580200071 580201312 1241 True 1088.0 1088 82.6400 997 2234 1 chr5A.!!$R1 1237
13 TraesCS5B01G386200 chr5A 580211495 580213198 1703 True 824.5 1190 84.5265 746 2554 2 chr5A.!!$R2 1808
14 TraesCS5B01G386200 chr5A 579242685 579244427 1742 False 444.0 730 82.8670 1040 2831 2 chr5A.!!$F2 1791
15 TraesCS5B01G386200 chr4B 12254248 12254916 668 True 944.0 944 92.3880 1 660 1 chr4B.!!$R1 659
16 TraesCS5B01G386200 chr4B 114953009 114953690 681 True 909.0 909 91.0560 1 669 1 chr4B.!!$R2 668
17 TraesCS5B01G386200 chr7B 14728666 14729324 658 True 854.0 854 90.0750 1 661 1 chr7B.!!$R1 660
18 TraesCS5B01G386200 chr3B 276852775 276853439 664 True 837.0 837 89.5990 1 661 1 chr3B.!!$R1 660
19 TraesCS5B01G386200 chr6B 105961407 105962064 657 True 798.0 798 88.7880 21 671 1 chr6B.!!$R1 650
20 TraesCS5B01G386200 chr1B 429704495 429705096 601 True 776.0 776 89.9840 57 661 1 chr1B.!!$R1 604
21 TraesCS5B01G386200 chr2D 275227315 275227988 673 False 747.0 747 86.8150 1 669 1 chr2D.!!$F1 668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
706 753 0.179234 TGTGAAGGAGCACCGTTGAA 59.821 50.0 0.0 0.0 41.83 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2413 3048 0.028374 TGCAATGCTCGCATCGATTG 59.972 50.0 6.82 2.01 35.31 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 138 6.756074 CAGAAGTTTAGCTCAACTCTAGGATG 59.244 42.308 13.52 3.86 35.87 3.51
180 186 4.101585 TGGTGGGCAAATTTGAATACACAA 59.898 37.500 22.31 13.49 0.00 3.33
260 267 7.148306 GCAATCTGCAATTTCAATTTTCTGGAT 60.148 33.333 0.00 0.00 44.26 3.41
280 288 5.422331 TGGATAGAAGAAGGACGAGAAACAT 59.578 40.000 0.00 0.00 0.00 2.71
289 297 3.131933 AGGACGAGAAACATGAGGAGATG 59.868 47.826 0.00 0.00 0.00 2.90
539 585 2.316867 CGATTGTGCCACACAGCGA 61.317 57.895 15.43 0.00 45.39 4.93
555 601 2.898343 GAACGTGCGGGTTGTGGT 60.898 61.111 0.00 0.00 0.00 4.16
640 687 0.840288 ACCCCACTAGATGCCACACA 60.840 55.000 0.00 0.00 0.00 3.72
671 718 1.309950 TCGGCGTCCAAAACAAATCA 58.690 45.000 6.85 0.00 0.00 2.57
672 719 1.676529 TCGGCGTCCAAAACAAATCAA 59.323 42.857 6.85 0.00 0.00 2.57
673 720 2.294791 TCGGCGTCCAAAACAAATCAAT 59.705 40.909 6.85 0.00 0.00 2.57
674 721 3.502595 TCGGCGTCCAAAACAAATCAATA 59.497 39.130 6.85 0.00 0.00 1.90
675 722 3.606346 CGGCGTCCAAAACAAATCAATAC 59.394 43.478 0.00 0.00 0.00 1.89
676 723 4.551388 GGCGTCCAAAACAAATCAATACA 58.449 39.130 0.00 0.00 0.00 2.29
677 724 4.985409 GGCGTCCAAAACAAATCAATACAA 59.015 37.500 0.00 0.00 0.00 2.41
678 725 5.107645 GGCGTCCAAAACAAATCAATACAAC 60.108 40.000 0.00 0.00 0.00 3.32
679 726 5.386933 GCGTCCAAAACAAATCAATACAACG 60.387 40.000 0.00 0.00 0.00 4.10
680 727 5.910166 CGTCCAAAACAAATCAATACAACGA 59.090 36.000 0.00 0.00 0.00 3.85
681 728 6.086241 CGTCCAAAACAAATCAATACAACGAG 59.914 38.462 0.00 0.00 0.00 4.18
682 729 6.362283 GTCCAAAACAAATCAATACAACGAGG 59.638 38.462 0.00 0.00 0.00 4.63
683 730 6.263392 TCCAAAACAAATCAATACAACGAGGA 59.737 34.615 0.00 0.00 0.00 3.71
684 731 6.920758 CCAAAACAAATCAATACAACGAGGAA 59.079 34.615 0.00 0.00 0.00 3.36
685 732 7.436673 CCAAAACAAATCAATACAACGAGGAAA 59.563 33.333 0.00 0.00 0.00 3.13
686 733 8.812329 CAAAACAAATCAATACAACGAGGAAAA 58.188 29.630 0.00 0.00 0.00 2.29
687 734 9.541143 AAAACAAATCAATACAACGAGGAAAAT 57.459 25.926 0.00 0.00 0.00 1.82
688 735 8.519492 AACAAATCAATACAACGAGGAAAATG 57.481 30.769 0.00 0.00 0.00 2.32
689 736 7.657336 ACAAATCAATACAACGAGGAAAATGT 58.343 30.769 0.00 0.00 0.00 2.71
690 737 7.594758 ACAAATCAATACAACGAGGAAAATGTG 59.405 33.333 0.00 0.00 0.00 3.21
691 738 7.447374 AATCAATACAACGAGGAAAATGTGA 57.553 32.000 0.00 0.00 0.00 3.58
692 739 6.869315 TCAATACAACGAGGAAAATGTGAA 57.131 33.333 0.00 0.00 0.00 3.18
693 740 6.898041 TCAATACAACGAGGAAAATGTGAAG 58.102 36.000 0.00 0.00 0.00 3.02
694 741 5.880054 ATACAACGAGGAAAATGTGAAGG 57.120 39.130 0.00 0.00 0.00 3.46
695 742 3.815809 ACAACGAGGAAAATGTGAAGGA 58.184 40.909 0.00 0.00 0.00 3.36
696 743 3.815401 ACAACGAGGAAAATGTGAAGGAG 59.185 43.478 0.00 0.00 0.00 3.69
697 744 2.427506 ACGAGGAAAATGTGAAGGAGC 58.572 47.619 0.00 0.00 0.00 4.70
698 745 2.224523 ACGAGGAAAATGTGAAGGAGCA 60.225 45.455 0.00 0.00 0.00 4.26
699 746 2.160417 CGAGGAAAATGTGAAGGAGCAC 59.840 50.000 0.00 0.00 39.22 4.40
700 747 2.489722 GAGGAAAATGTGAAGGAGCACC 59.510 50.000 0.00 0.00 37.99 5.01
701 748 1.200020 GGAAAATGTGAAGGAGCACCG 59.800 52.381 0.00 0.00 41.83 4.94
702 749 1.880027 GAAAATGTGAAGGAGCACCGT 59.120 47.619 0.00 0.00 41.83 4.83
703 750 1.981256 AAATGTGAAGGAGCACCGTT 58.019 45.000 0.00 0.00 41.83 4.44
704 751 1.238439 AATGTGAAGGAGCACCGTTG 58.762 50.000 0.00 0.00 41.83 4.10
705 752 0.396435 ATGTGAAGGAGCACCGTTGA 59.604 50.000 0.00 0.00 41.83 3.18
706 753 0.179234 TGTGAAGGAGCACCGTTGAA 59.821 50.000 0.00 0.00 41.83 2.69
707 754 1.202758 TGTGAAGGAGCACCGTTGAAT 60.203 47.619 0.00 0.00 41.83 2.57
708 755 2.037902 TGTGAAGGAGCACCGTTGAATA 59.962 45.455 0.00 0.00 41.83 1.75
709 756 3.270877 GTGAAGGAGCACCGTTGAATAT 58.729 45.455 0.00 0.00 41.83 1.28
710 757 3.689649 GTGAAGGAGCACCGTTGAATATT 59.310 43.478 0.00 0.00 41.83 1.28
711 758 4.156008 GTGAAGGAGCACCGTTGAATATTT 59.844 41.667 0.00 0.00 41.83 1.40
712 759 4.764823 TGAAGGAGCACCGTTGAATATTTT 59.235 37.500 0.00 0.00 41.83 1.82
713 760 4.965119 AGGAGCACCGTTGAATATTTTC 57.035 40.909 0.00 0.00 41.83 2.29
714 761 3.694566 AGGAGCACCGTTGAATATTTTCC 59.305 43.478 0.00 0.00 41.83 3.13
715 762 3.442273 GGAGCACCGTTGAATATTTTCCA 59.558 43.478 0.00 0.00 0.00 3.53
716 763 4.097892 GGAGCACCGTTGAATATTTTCCAT 59.902 41.667 0.00 0.00 0.00 3.41
717 764 5.394115 GGAGCACCGTTGAATATTTTCCATT 60.394 40.000 0.00 0.00 0.00 3.16
718 765 6.036577 AGCACCGTTGAATATTTTCCATTT 57.963 33.333 0.00 0.00 0.00 2.32
719 766 6.099341 AGCACCGTTGAATATTTTCCATTTC 58.901 36.000 0.00 0.00 0.00 2.17
720 767 5.004345 GCACCGTTGAATATTTTCCATTTCG 59.996 40.000 0.00 0.00 0.00 3.46
721 768 5.514914 CACCGTTGAATATTTTCCATTTCGG 59.485 40.000 0.00 0.00 39.09 4.30
722 769 5.184287 ACCGTTGAATATTTTCCATTTCGGT 59.816 36.000 0.00 0.00 40.96 4.69
723 770 5.514914 CCGTTGAATATTTTCCATTTCGGTG 59.485 40.000 0.00 0.00 35.57 4.94
724 771 6.090129 CGTTGAATATTTTCCATTTCGGTGT 58.910 36.000 0.00 0.00 35.57 4.16
725 772 7.244898 CGTTGAATATTTTCCATTTCGGTGTA 58.755 34.615 0.00 0.00 35.57 2.90
726 773 7.217447 CGTTGAATATTTTCCATTTCGGTGTAC 59.783 37.037 0.00 0.00 35.57 2.90
727 774 7.689446 TGAATATTTTCCATTTCGGTGTACA 57.311 32.000 0.00 0.00 35.57 2.90
728 775 8.287439 TGAATATTTTCCATTTCGGTGTACAT 57.713 30.769 0.00 0.00 35.57 2.29
729 776 8.187480 TGAATATTTTCCATTTCGGTGTACATG 58.813 33.333 0.00 0.00 35.57 3.21
730 777 7.873719 ATATTTTCCATTTCGGTGTACATGA 57.126 32.000 0.00 0.00 35.57 3.07
731 778 5.621197 TTTTCCATTTCGGTGTACATGAG 57.379 39.130 0.00 0.00 35.57 2.90
732 779 4.545208 TTCCATTTCGGTGTACATGAGA 57.455 40.909 0.00 0.00 35.57 3.27
733 780 4.123497 TCCATTTCGGTGTACATGAGAG 57.877 45.455 0.00 0.00 35.57 3.20
734 781 3.118775 TCCATTTCGGTGTACATGAGAGG 60.119 47.826 0.00 4.40 35.57 3.69
735 782 3.118775 CCATTTCGGTGTACATGAGAGGA 60.119 47.826 0.00 0.00 0.00 3.71
736 783 3.587797 TTTCGGTGTACATGAGAGGAC 57.412 47.619 0.00 0.00 0.00 3.85
737 784 1.092348 TCGGTGTACATGAGAGGACG 58.908 55.000 0.00 0.00 0.00 4.79
738 785 1.092348 CGGTGTACATGAGAGGACGA 58.908 55.000 0.00 0.00 0.00 4.20
739 786 1.676529 CGGTGTACATGAGAGGACGAT 59.323 52.381 0.00 0.00 0.00 3.73
740 787 2.287069 CGGTGTACATGAGAGGACGATC 60.287 54.545 0.00 0.00 0.00 3.69
741 788 2.952978 GGTGTACATGAGAGGACGATCT 59.047 50.000 0.00 0.00 0.00 2.75
742 789 3.243234 GGTGTACATGAGAGGACGATCTG 60.243 52.174 0.00 0.00 0.00 2.90
743 790 3.628032 GTGTACATGAGAGGACGATCTGA 59.372 47.826 0.00 0.00 0.00 3.27
744 791 4.277174 GTGTACATGAGAGGACGATCTGAT 59.723 45.833 0.00 0.00 0.00 2.90
748 795 4.403752 ACATGAGAGGACGATCTGATTCAA 59.596 41.667 0.00 0.00 0.00 2.69
760 807 5.007430 CGATCTGATTCAAGTGGAAATGGAG 59.993 44.000 0.00 0.00 39.39 3.86
766 813 5.964958 TTCAAGTGGAAATGGAGATCAAC 57.035 39.130 0.00 0.00 30.98 3.18
774 821 4.515567 GGAAATGGAGATCAACGTATTCCC 59.484 45.833 0.00 0.00 0.00 3.97
776 823 5.373812 AATGGAGATCAACGTATTCCCTT 57.626 39.130 0.00 0.00 0.00 3.95
777 824 4.402056 TGGAGATCAACGTATTCCCTTC 57.598 45.455 0.00 0.00 0.00 3.46
779 826 4.141937 TGGAGATCAACGTATTCCCTTCAG 60.142 45.833 0.00 0.00 0.00 3.02
800 847 1.065701 GAGAACGCGAAGAGATAGGCA 59.934 52.381 15.93 0.00 0.00 4.75
801 848 1.201343 GAACGCGAAGAGATAGGCAC 58.799 55.000 15.93 0.00 0.00 5.01
802 849 0.525668 AACGCGAAGAGATAGGCACG 60.526 55.000 15.93 0.00 0.00 5.34
804 851 1.734137 GCGAAGAGATAGGCACGGA 59.266 57.895 0.00 0.00 0.00 4.69
806 853 1.841450 CGAAGAGATAGGCACGGAAC 58.159 55.000 0.00 0.00 0.00 3.62
853 903 1.542547 GCCTTCTCCGTCCAGTGAAAA 60.543 52.381 0.00 0.00 0.00 2.29
854 904 2.846193 CCTTCTCCGTCCAGTGAAAAA 58.154 47.619 0.00 0.00 0.00 1.94
914 965 3.131478 CCGCCCAAAACCCTAGCG 61.131 66.667 0.00 0.00 46.04 4.26
931 982 1.447314 CGGCCGTCCACTTTCCTAC 60.447 63.158 19.50 0.00 0.00 3.18
1048 1115 4.880426 GCCTCCCCTCCGGATCCA 62.880 72.222 13.41 0.00 41.00 3.41
1096 1163 1.021390 CGGCTACCACTTGCTCAAGG 61.021 60.000 13.48 1.12 42.53 3.61
1260 1327 3.800531 TCTCACACTCGATGATACCGTA 58.199 45.455 0.00 0.00 0.00 4.02
1364 1443 7.067496 TGACTACCAAGATCAGAGACTTTTT 57.933 36.000 0.00 0.00 0.00 1.94
1370 1449 4.026356 AGATCAGAGACTTTTTGGTGGG 57.974 45.455 0.00 0.00 0.00 4.61
1465 1545 3.211803 TCACTGTAAAGGTCGATGTCG 57.788 47.619 0.00 0.00 41.45 4.35
1659 1740 4.630940 CCAGTCTTCAGAGCAGAATTCTTC 59.369 45.833 4.86 0.01 0.00 2.87
1697 1778 1.224592 CCACCACTGAGGCCATACC 59.775 63.158 5.01 0.00 43.14 2.73
1764 1853 3.056465 TCATGTACACTGATACGTTGCCA 60.056 43.478 0.00 0.00 0.00 4.92
1884 1979 4.697514 AGTTGTGCAAGCATATCGATACT 58.302 39.130 7.41 0.00 0.00 2.12
2010 2621 0.603569 TGGAGTCTGAAGGCTTCGAC 59.396 55.000 28.62 28.62 35.18 4.20
2047 2658 2.311542 TGCCCTGGTGTTATGAAGGATT 59.688 45.455 0.00 0.00 30.92 3.01
2131 2752 3.567164 AGGTTTCGATCATGATGCCATTC 59.433 43.478 14.30 0.00 0.00 2.67
2132 2753 3.316029 GGTTTCGATCATGATGCCATTCA 59.684 43.478 14.30 0.00 0.00 2.57
2136 2757 4.139038 TCGATCATGATGCCATTCACAAT 58.861 39.130 14.30 0.00 0.00 2.71
2141 2762 4.890581 TCATGATGCCATTCACAATCATCA 59.109 37.500 5.80 5.80 44.88 3.07
2143 2764 4.274978 TGATGCCATTCACAATCATCAGT 58.725 39.130 0.00 0.00 38.70 3.41
2151 2772 6.404403 CCATTCACAATCATCAGTCCAGAAAG 60.404 42.308 0.00 0.00 0.00 2.62
2153 2774 6.358974 TCACAATCATCAGTCCAGAAAGTA 57.641 37.500 0.00 0.00 0.00 2.24
2156 2777 6.427853 CACAATCATCAGTCCAGAAAGTAACA 59.572 38.462 0.00 0.00 0.00 2.41
2158 2779 7.041098 ACAATCATCAGTCCAGAAAGTAACAAC 60.041 37.037 0.00 0.00 0.00 3.32
2159 2780 5.924356 TCATCAGTCCAGAAAGTAACAACA 58.076 37.500 0.00 0.00 0.00 3.33
2160 2781 5.991606 TCATCAGTCCAGAAAGTAACAACAG 59.008 40.000 0.00 0.00 0.00 3.16
2163 2784 5.128827 TCAGTCCAGAAAGTAACAACAGACT 59.871 40.000 0.00 0.00 32.51 3.24
2164 2785 5.463724 CAGTCCAGAAAGTAACAACAGACTC 59.536 44.000 0.00 0.00 29.97 3.36
2165 2786 5.364157 AGTCCAGAAAGTAACAACAGACTCT 59.636 40.000 0.00 0.00 0.00 3.24
2166 2787 5.463724 GTCCAGAAAGTAACAACAGACTCTG 59.536 44.000 4.36 4.36 37.52 3.35
2167 2788 4.212214 CCAGAAAGTAACAACAGACTCTGC 59.788 45.833 5.92 0.00 34.37 4.26
2168 2789 4.811024 CAGAAAGTAACAACAGACTCTGCA 59.189 41.667 5.92 0.00 34.37 4.41
2169 2790 5.294306 CAGAAAGTAACAACAGACTCTGCAA 59.706 40.000 5.92 0.00 34.37 4.08
2170 2791 5.880332 AGAAAGTAACAACAGACTCTGCAAA 59.120 36.000 5.92 0.00 34.37 3.68
2171 2792 6.543831 AGAAAGTAACAACAGACTCTGCAAAT 59.456 34.615 5.92 0.00 34.37 2.32
2184 2805 3.833706 GCAAATCTGCGTGCTATCC 57.166 52.632 0.00 0.00 39.20 2.59
2186 2807 1.003116 GCAAATCTGCGTGCTATCCAG 60.003 52.381 0.00 0.00 39.20 3.86
2189 2810 4.060900 CAAATCTGCGTGCTATCCAGTAT 58.939 43.478 0.00 0.00 0.00 2.12
2238 2873 4.570930 TCACAAGGATGCAATGTACGTTA 58.429 39.130 0.00 0.00 0.00 3.18
2241 2876 4.391830 ACAAGGATGCAATGTACGTTAGTG 59.608 41.667 0.00 0.00 0.00 2.74
2244 2879 3.374058 GGATGCAATGTACGTTAGTGCTT 59.626 43.478 20.27 15.83 39.62 3.91
2246 2881 4.822036 TGCAATGTACGTTAGTGCTTTT 57.178 36.364 20.27 0.00 39.62 2.27
2269 2904 5.621197 TTGTTTGGTCGTCATATCCTTTG 57.379 39.130 0.00 0.00 0.00 2.77
2270 2905 3.438781 TGTTTGGTCGTCATATCCTTTGC 59.561 43.478 0.00 0.00 0.00 3.68
2286 2921 5.123227 TCCTTTGCGGAGAACTATTAATGG 58.877 41.667 0.00 0.00 36.69 3.16
2293 2928 5.353123 GCGGAGAACTATTAATGGTTTGACA 59.647 40.000 17.13 0.00 31.29 3.58
2302 2937 9.899661 ACTATTAATGGTTTGACAAGCTATGTA 57.100 29.630 1.72 0.00 44.12 2.29
2318 2953 5.124457 AGCTATGTACAAAGCAAGAACCATG 59.876 40.000 0.00 0.00 41.32 3.66
2334 2969 6.418101 AGAACCATGTGTGCTAATTAGTGAT 58.582 36.000 13.91 0.00 27.60 3.06
2348 2983 9.026074 GCTAATTAGTGATCAGTTAGTTCAGAC 57.974 37.037 8.68 0.00 0.00 3.51
2379 3014 4.321008 GCCTTTCAACTAGTTGCCCTTTAC 60.321 45.833 27.49 11.60 40.24 2.01
2383 3018 6.969993 TTCAACTAGTTGCCCTTTACATTT 57.030 33.333 27.49 0.00 40.24 2.32
2384 3019 6.969993 TCAACTAGTTGCCCTTTACATTTT 57.030 33.333 27.49 0.00 40.24 1.82
2392 3027 2.612721 GCCCTTTACATTTTGCCCAGTG 60.613 50.000 0.00 0.00 0.00 3.66
2396 3031 4.039124 CCTTTACATTTTGCCCAGTGTCTT 59.961 41.667 0.00 0.00 0.00 3.01
2413 3048 5.698545 AGTGTCTTTCTGATTGCTCTGTAAC 59.301 40.000 0.00 0.00 0.00 2.50
2422 3057 4.521943 GATTGCTCTGTAACAATCGATGC 58.478 43.478 0.00 0.00 41.82 3.91
2443 3078 2.564471 GCATTGCACTGCTTCCTCT 58.436 52.632 20.72 0.00 39.12 3.69
2453 3088 1.467734 CTGCTTCCTCTGTTCATGCAC 59.532 52.381 0.00 0.00 0.00 4.57
2458 3093 0.679002 CCTCTGTTCATGCACCCCTG 60.679 60.000 0.00 0.00 0.00 4.45
2459 3094 0.037303 CTCTGTTCATGCACCCCTGT 59.963 55.000 0.00 0.00 0.00 4.00
2461 3096 0.883833 CTGTTCATGCACCCCTGTTC 59.116 55.000 0.00 0.00 0.00 3.18
2462 3097 0.184692 TGTTCATGCACCCCTGTTCA 59.815 50.000 0.00 0.00 0.00 3.18
2463 3098 1.203038 TGTTCATGCACCCCTGTTCAT 60.203 47.619 0.00 0.00 0.00 2.57
2464 3099 1.895131 GTTCATGCACCCCTGTTCATT 59.105 47.619 0.00 0.00 0.00 2.57
2465 3100 3.088532 GTTCATGCACCCCTGTTCATTA 58.911 45.455 0.00 0.00 0.00 1.90
2466 3101 2.722094 TCATGCACCCCTGTTCATTAC 58.278 47.619 0.00 0.00 0.00 1.89
2467 3102 2.040947 TCATGCACCCCTGTTCATTACA 59.959 45.455 0.00 0.00 34.95 2.41
2478 3120 8.966868 ACCCCTGTTCATTACATGTTTATTTAG 58.033 33.333 2.30 0.00 35.85 1.85
2498 3140 6.983906 TTAGCAGGTTCAGATAGATCATGA 57.016 37.500 0.00 0.00 31.19 3.07
2499 3141 5.212532 AGCAGGTTCAGATAGATCATGAC 57.787 43.478 0.00 0.00 31.19 3.06
2500 3142 4.652881 AGCAGGTTCAGATAGATCATGACA 59.347 41.667 0.00 0.00 31.19 3.58
2513 3157 8.913487 ATAGATCATGACATGTTGAAATGCTA 57.087 30.769 14.98 4.55 0.00 3.49
2523 3167 4.415596 TGTTGAAATGCTAGGTTGGGATT 58.584 39.130 0.00 0.00 0.00 3.01
2526 3170 4.671831 TGAAATGCTAGGTTGGGATTCAA 58.328 39.130 0.00 0.00 0.00 2.69
2528 3172 6.430864 TGAAATGCTAGGTTGGGATTCAATA 58.569 36.000 0.00 0.00 37.73 1.90
2551 3195 3.826265 AACATTGGCCTTGGCGGGT 62.826 57.895 3.32 0.00 0.00 5.28
2554 3198 1.077625 ATTGGCCTTGGCGGGTTTA 59.922 52.632 3.32 0.00 0.00 2.01
2555 3199 0.543174 ATTGGCCTTGGCGGGTTTAA 60.543 50.000 3.32 0.00 0.00 1.52
2556 3200 1.465200 TTGGCCTTGGCGGGTTTAAC 61.465 55.000 3.32 0.00 0.00 2.01
2558 3202 1.465200 GGCCTTGGCGGGTTTAACAA 61.465 55.000 5.49 0.00 0.00 2.83
2559 3203 0.389757 GCCTTGGCGGGTTTAACAAA 59.610 50.000 0.00 0.00 0.00 2.83
2560 3204 1.202545 GCCTTGGCGGGTTTAACAAAA 60.203 47.619 0.00 0.00 0.00 2.44
2561 3205 2.742204 GCCTTGGCGGGTTTAACAAAAA 60.742 45.455 0.00 0.00 0.00 1.94
2583 3372 6.528537 AAAATTATGGCTGCAGTTATGTCA 57.471 33.333 16.64 0.00 0.00 3.58
2587 3376 3.853831 TGGCTGCAGTTATGTCATTTG 57.146 42.857 16.64 0.00 0.00 2.32
2588 3377 2.094597 TGGCTGCAGTTATGTCATTTGC 60.095 45.455 16.64 8.78 35.42 3.68
2591 3380 3.611113 GCTGCAGTTATGTCATTTGCAAG 59.389 43.478 16.64 12.15 43.36 4.01
2594 3383 6.513806 TGCAGTTATGTCATTTGCAAGTAT 57.486 33.333 13.66 0.00 41.34 2.12
2597 3386 6.625740 GCAGTTATGTCATTTGCAAGTATGGT 60.626 38.462 10.47 2.07 34.99 3.55
2599 3388 7.274033 CAGTTATGTCATTTGCAAGTATGGTTG 59.726 37.037 10.47 0.00 0.00 3.77
2600 3389 4.517952 TGTCATTTGCAAGTATGGTTGG 57.482 40.909 10.47 0.00 0.00 3.77
2601 3390 3.257873 TGTCATTTGCAAGTATGGTTGGG 59.742 43.478 10.47 0.00 0.00 4.12
2603 3392 4.160252 GTCATTTGCAAGTATGGTTGGGAT 59.840 41.667 10.47 0.00 0.00 3.85
2604 3393 4.776837 TCATTTGCAAGTATGGTTGGGATT 59.223 37.500 10.47 0.00 0.00 3.01
2605 3394 4.799564 TTTGCAAGTATGGTTGGGATTC 57.200 40.909 0.00 0.00 0.00 2.52
2606 3395 3.448093 TGCAAGTATGGTTGGGATTCA 57.552 42.857 0.00 0.00 0.00 2.57
2616 6155 4.158786 TGGTTGGGATTCAATGAACATGT 58.841 39.130 0.00 0.00 37.73 3.21
2618 6157 4.220382 GGTTGGGATTCAATGAACATGTGA 59.780 41.667 0.00 0.00 37.73 3.58
2621 6160 6.608539 TGGGATTCAATGAACATGTGATTT 57.391 33.333 0.00 0.00 0.00 2.17
2624 6163 7.098477 GGGATTCAATGAACATGTGATTTCAA 58.902 34.615 0.00 0.00 35.42 2.69
2627 6166 9.361315 GATTCAATGAACATGTGATTTCAATCA 57.639 29.630 0.00 0.00 42.78 2.57
2629 6168 9.713713 TTCAATGAACATGTGATTTCAATCATT 57.286 25.926 10.80 10.80 46.17 2.57
2678 6222 3.610911 AGTTACTAAAGACCCTGCATGC 58.389 45.455 11.82 11.82 0.00 4.06
2679 6223 3.264450 AGTTACTAAAGACCCTGCATGCT 59.736 43.478 20.33 0.00 0.00 3.79
2680 6224 4.469945 AGTTACTAAAGACCCTGCATGCTA 59.530 41.667 20.33 4.40 0.00 3.49
2693 6237 6.071108 ACCCTGCATGCTACTATCTAATACTG 60.071 42.308 20.33 0.00 0.00 2.74
2799 6353 9.768215 TCCTTCATGGAGAATTATTAAAGGTTT 57.232 29.630 1.24 0.00 40.56 3.27
2800 6354 9.807649 CCTTCATGGAGAATTATTAAAGGTTTG 57.192 33.333 1.24 0.00 38.35 2.93
2832 6386 2.672195 GCTATGTGCAAAGCAAGAACCC 60.672 50.000 11.06 0.00 41.47 4.11
2836 6390 4.027674 TGTGCAAAGCAAGAACCCTATA 57.972 40.909 0.00 0.00 41.47 1.31
2837 6391 3.756434 TGTGCAAAGCAAGAACCCTATAC 59.244 43.478 0.00 0.00 41.47 1.47
2838 6392 3.128764 GTGCAAAGCAAGAACCCTATACC 59.871 47.826 0.00 0.00 41.47 2.73
2839 6393 3.010138 TGCAAAGCAAGAACCCTATACCT 59.990 43.478 0.00 0.00 34.76 3.08
2840 6394 4.226394 TGCAAAGCAAGAACCCTATACCTA 59.774 41.667 0.00 0.00 34.76 3.08
2841 6395 4.575236 GCAAAGCAAGAACCCTATACCTAC 59.425 45.833 0.00 0.00 0.00 3.18
2843 6397 6.177610 CAAAGCAAGAACCCTATACCTACAA 58.822 40.000 0.00 0.00 0.00 2.41
2844 6398 5.354842 AGCAAGAACCCTATACCTACAAC 57.645 43.478 0.00 0.00 0.00 3.32
2845 6399 5.030820 AGCAAGAACCCTATACCTACAACT 58.969 41.667 0.00 0.00 0.00 3.16
2846 6400 6.200114 AGCAAGAACCCTATACCTACAACTA 58.800 40.000 0.00 0.00 0.00 2.24
2851 6407 7.845037 AGAACCCTATACCTACAACTAAACAC 58.155 38.462 0.00 0.00 0.00 3.32
2855 6411 8.753133 ACCCTATACCTACAACTAAACACTTAC 58.247 37.037 0.00 0.00 0.00 2.34
2866 6422 9.880157 ACAACTAAACACTTACTTCAGAACTTA 57.120 29.630 0.00 0.00 0.00 2.24
2875 6431 8.874816 CACTTACTTCAGAACTTATAAGCCTTC 58.125 37.037 12.54 9.60 0.00 3.46
2876 6432 8.041919 ACTTACTTCAGAACTTATAAGCCTTCC 58.958 37.037 12.54 0.00 0.00 3.46
2877 6433 6.374417 ACTTCAGAACTTATAAGCCTTCCA 57.626 37.500 12.54 0.00 0.00 3.53
2878 6434 6.779860 ACTTCAGAACTTATAAGCCTTCCAA 58.220 36.000 12.54 5.40 0.00 3.53
2879 6435 6.881602 ACTTCAGAACTTATAAGCCTTCCAAG 59.118 38.462 12.54 14.45 0.00 3.61
2880 6436 6.374417 TCAGAACTTATAAGCCTTCCAAGT 57.626 37.500 12.54 0.00 0.00 3.16
2881 6437 6.779860 TCAGAACTTATAAGCCTTCCAAGTT 58.220 36.000 12.54 13.30 40.99 2.66
2891 6447 2.814336 GCCTTCCAAGTTCCAACTAGTG 59.186 50.000 0.00 0.00 38.57 2.74
2910 6466 0.108377 GGCCCTTTACATTTTGCCCG 60.108 55.000 0.00 0.00 32.74 6.13
2915 6471 2.036604 CCTTTACATTTTGCCCGGTGTT 59.963 45.455 0.00 0.00 0.00 3.32
2921 6477 2.588027 TTTTGCCCGGTGTTTTTCTC 57.412 45.000 0.00 0.00 0.00 2.87
2927 6483 1.339610 CCCGGTGTTTTTCTCATTGCA 59.660 47.619 0.00 0.00 0.00 4.08
2935 6491 5.171337 GTGTTTTTCTCATTGCACTGTAACG 59.829 40.000 3.77 0.00 0.00 3.18
2939 6495 4.186856 TCTCATTGCACTGTAACGATCA 57.813 40.909 3.77 0.00 0.00 2.92
2967 6523 3.774066 GCATTGTGCTGGTTCCTTAATC 58.226 45.455 0.00 0.00 40.96 1.75
2969 6525 3.806949 TTGTGCTGGTTCCTTAATCCT 57.193 42.857 0.00 0.00 0.00 3.24
2970 6526 3.071874 TGTGCTGGTTCCTTAATCCTG 57.928 47.619 0.00 0.00 0.00 3.86
2972 6528 1.284785 TGCTGGTTCCTTAATCCTGGG 59.715 52.381 0.00 0.00 0.00 4.45
2974 6530 2.025321 GCTGGTTCCTTAATCCTGGGAA 60.025 50.000 0.00 0.00 36.86 3.97
2982 6538 5.016173 TCCTTAATCCTGGGAACATTTGTG 58.984 41.667 0.00 0.00 41.51 3.33
2983 6539 4.160252 CCTTAATCCTGGGAACATTTGTGG 59.840 45.833 0.00 0.00 41.51 4.17
2984 6540 1.560505 ATCCTGGGAACATTTGTGGC 58.439 50.000 0.00 0.00 41.51 5.01
2985 6541 0.541764 TCCTGGGAACATTTGTGGCC 60.542 55.000 0.00 0.00 41.51 5.36
2986 6542 0.831288 CCTGGGAACATTTGTGGCCA 60.831 55.000 0.00 0.00 41.51 5.36
2987 6543 1.269012 CTGGGAACATTTGTGGCCAT 58.731 50.000 9.72 0.00 41.51 4.40
2988 6544 0.975135 TGGGAACATTTGTGGCCATG 59.025 50.000 9.72 5.41 33.40 3.66
2989 6545 0.249955 GGGAACATTTGTGGCCATGG 59.750 55.000 9.72 7.63 0.00 3.66
2990 6546 0.391528 GGAACATTTGTGGCCATGGC 60.392 55.000 29.47 29.47 41.06 4.40
3001 6557 1.077716 GCCATGGCCTCGTAGGTTT 60.078 57.895 27.24 0.00 37.80 3.27
3002 6558 0.179468 GCCATGGCCTCGTAGGTTTA 59.821 55.000 27.24 0.00 37.80 2.01
3004 6560 2.038033 GCCATGGCCTCGTAGGTTTATA 59.962 50.000 27.24 0.00 37.80 0.98
3005 6561 3.864921 GCCATGGCCTCGTAGGTTTATAG 60.865 52.174 27.24 0.00 37.80 1.31
3006 6562 3.576982 CCATGGCCTCGTAGGTTTATAGA 59.423 47.826 3.32 0.00 37.80 1.98
3007 6563 4.223032 CCATGGCCTCGTAGGTTTATAGAT 59.777 45.833 3.32 0.00 37.80 1.98
3008 6564 5.280011 CCATGGCCTCGTAGGTTTATAGATT 60.280 44.000 3.32 0.00 37.80 2.40
3009 6565 5.881923 TGGCCTCGTAGGTTTATAGATTT 57.118 39.130 3.32 0.00 37.80 2.17
3010 6566 5.850614 TGGCCTCGTAGGTTTATAGATTTC 58.149 41.667 3.32 0.00 37.80 2.17
3040 6677 7.098074 GCTACGGTTAGCCTGATATAATAGT 57.902 40.000 0.00 0.00 44.55 2.12
3041 6678 6.973474 GCTACGGTTAGCCTGATATAATAGTG 59.027 42.308 0.00 0.00 44.55 2.74
3042 6679 6.282199 ACGGTTAGCCTGATATAATAGTGG 57.718 41.667 0.00 0.00 0.00 4.00
3043 6680 5.109903 CGGTTAGCCTGATATAATAGTGGC 58.890 45.833 0.00 0.00 40.54 5.01
3047 6684 4.213564 GCCTGATATAATAGTGGCTGCT 57.786 45.455 0.00 0.00 37.58 4.24
3048 6685 3.937706 GCCTGATATAATAGTGGCTGCTG 59.062 47.826 0.00 0.00 37.58 4.41
3049 6686 4.564406 GCCTGATATAATAGTGGCTGCTGT 60.564 45.833 0.00 0.00 37.58 4.40
3050 6687 4.934001 CCTGATATAATAGTGGCTGCTGTG 59.066 45.833 0.00 0.00 0.00 3.66
3051 6688 5.279657 CCTGATATAATAGTGGCTGCTGTGA 60.280 44.000 0.00 0.00 0.00 3.58
3052 6689 6.364568 TGATATAATAGTGGCTGCTGTGAT 57.635 37.500 0.00 0.00 0.00 3.06
3053 6690 7.364144 CCTGATATAATAGTGGCTGCTGTGATA 60.364 40.741 0.00 0.00 0.00 2.15
3054 6691 8.082672 TGATATAATAGTGGCTGCTGTGATAT 57.917 34.615 0.00 0.00 0.00 1.63
3055 6692 9.200817 TGATATAATAGTGGCTGCTGTGATATA 57.799 33.333 0.00 0.00 0.00 0.86
3056 6693 9.689976 GATATAATAGTGGCTGCTGTGATATAG 57.310 37.037 0.00 0.00 0.00 1.31
3057 6694 5.815233 AATAGTGGCTGCTGTGATATAGT 57.185 39.130 0.00 0.00 0.00 2.12
3058 6695 3.465742 AGTGGCTGCTGTGATATAGTG 57.534 47.619 0.00 0.00 0.00 2.74
3059 6696 3.033909 AGTGGCTGCTGTGATATAGTGA 58.966 45.455 0.00 0.00 0.00 3.41
3060 6697 3.645212 AGTGGCTGCTGTGATATAGTGAT 59.355 43.478 0.00 0.00 0.00 3.06
3061 6698 3.993081 GTGGCTGCTGTGATATAGTGATC 59.007 47.826 0.00 0.00 0.00 2.92
3062 6699 3.899980 TGGCTGCTGTGATATAGTGATCT 59.100 43.478 0.00 0.00 0.00 2.75
3063 6700 4.244066 GGCTGCTGTGATATAGTGATCTG 58.756 47.826 0.00 0.00 0.00 2.90
3064 6701 4.021632 GGCTGCTGTGATATAGTGATCTGA 60.022 45.833 0.00 0.00 0.00 3.27
3065 6702 5.337410 GGCTGCTGTGATATAGTGATCTGAT 60.337 44.000 0.00 0.00 0.00 2.90
3066 6703 5.577554 GCTGCTGTGATATAGTGATCTGATG 59.422 44.000 0.00 0.00 0.00 3.07
3067 6704 6.571925 GCTGCTGTGATATAGTGATCTGATGA 60.572 42.308 0.00 0.00 0.00 2.92
3068 6705 7.294017 TGCTGTGATATAGTGATCTGATGAA 57.706 36.000 0.00 0.00 0.00 2.57
3069 6706 7.376615 TGCTGTGATATAGTGATCTGATGAAG 58.623 38.462 0.00 0.00 0.00 3.02
3070 6707 6.812656 GCTGTGATATAGTGATCTGATGAAGG 59.187 42.308 0.00 0.00 0.00 3.46
3071 6708 6.695429 TGTGATATAGTGATCTGATGAAGGC 58.305 40.000 0.00 0.00 0.00 4.35
3072 6709 6.496218 TGTGATATAGTGATCTGATGAAGGCT 59.504 38.462 0.00 0.00 0.00 4.58
3073 6710 6.812656 GTGATATAGTGATCTGATGAAGGCTG 59.187 42.308 0.00 0.00 0.00 4.85
3074 6711 6.496218 TGATATAGTGATCTGATGAAGGCTGT 59.504 38.462 0.00 0.00 0.00 4.40
3075 6712 3.263489 AGTGATCTGATGAAGGCTGTG 57.737 47.619 0.00 0.00 0.00 3.66
3076 6713 2.836372 AGTGATCTGATGAAGGCTGTGA 59.164 45.455 0.00 0.00 0.00 3.58
3077 6714 3.118702 AGTGATCTGATGAAGGCTGTGAG 60.119 47.826 0.00 0.00 0.00 3.51
3078 6715 2.169978 TGATCTGATGAAGGCTGTGAGG 59.830 50.000 0.00 0.00 0.00 3.86
3079 6716 1.649321 TCTGATGAAGGCTGTGAGGT 58.351 50.000 0.00 0.00 0.00 3.85
3080 6717 1.980765 TCTGATGAAGGCTGTGAGGTT 59.019 47.619 0.00 0.00 0.00 3.50
3081 6718 2.027745 TCTGATGAAGGCTGTGAGGTTC 60.028 50.000 0.00 0.00 0.00 3.62
3082 6719 1.338105 TGATGAAGGCTGTGAGGTTCG 60.338 52.381 0.00 0.00 0.00 3.95
3083 6720 0.036010 ATGAAGGCTGTGAGGTTCGG 60.036 55.000 0.00 0.00 0.00 4.30
3084 6721 2.032681 AAGGCTGTGAGGTTCGGC 59.967 61.111 0.00 0.00 36.57 5.54
3095 6732 3.929660 GGTTCGGCCTGAAGTACTT 57.070 52.632 8.13 8.13 37.23 2.24
3096 6733 1.723220 GGTTCGGCCTGAAGTACTTC 58.277 55.000 25.73 25.73 37.23 3.01
3097 6734 1.675116 GGTTCGGCCTGAAGTACTTCC 60.675 57.143 28.43 15.45 37.23 3.46
3098 6735 1.001633 GTTCGGCCTGAAGTACTTCCA 59.998 52.381 28.43 17.14 37.23 3.53
3099 6736 1.568504 TCGGCCTGAAGTACTTCCAT 58.431 50.000 28.43 0.00 38.77 3.41
3100 6737 2.742348 TCGGCCTGAAGTACTTCCATA 58.258 47.619 28.43 12.56 38.77 2.74
3101 6738 2.429610 TCGGCCTGAAGTACTTCCATAC 59.570 50.000 28.43 16.72 38.77 2.39
3102 6739 2.167693 CGGCCTGAAGTACTTCCATACA 59.832 50.000 28.43 12.45 38.77 2.29
3103 6740 3.369052 CGGCCTGAAGTACTTCCATACAA 60.369 47.826 28.43 11.23 38.77 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 138 6.699575 AAGTACACCAGATTGCAATATTCC 57.300 37.500 12.97 0.00 0.00 3.01
180 186 2.755655 TGACAAACACACCACGGATTTT 59.244 40.909 0.00 0.00 0.00 1.82
260 267 5.105716 CCTCATGTTTCTCGTCCTTCTTCTA 60.106 44.000 0.00 0.00 0.00 2.10
280 288 2.441375 AGGTCGATCTCTCATCTCCTCA 59.559 50.000 0.00 0.00 0.00 3.86
289 297 3.619233 GAGCTAACAGGTCGATCTCTC 57.381 52.381 0.00 0.00 32.69 3.20
447 492 4.351054 CCGGCCTGCCTTCCAACT 62.351 66.667 6.60 0.00 0.00 3.16
473 518 2.508439 CCGCACGACCTAACGCAT 60.508 61.111 0.00 0.00 36.70 4.73
536 582 4.659874 CACAACCCGCACGTTCGC 62.660 66.667 0.86 0.00 0.00 4.70
539 585 2.438795 AACCACAACCCGCACGTT 60.439 55.556 0.00 0.00 0.00 3.99
640 687 1.068127 GGACGCCGATAACTACCACAT 59.932 52.381 0.00 0.00 0.00 3.21
646 693 3.316071 TGTTTTGGACGCCGATAACTA 57.684 42.857 0.00 0.00 0.00 2.24
671 718 6.001460 TCCTTCACATTTTCCTCGTTGTATT 58.999 36.000 0.00 0.00 0.00 1.89
672 719 5.556915 TCCTTCACATTTTCCTCGTTGTAT 58.443 37.500 0.00 0.00 0.00 2.29
673 720 4.963373 TCCTTCACATTTTCCTCGTTGTA 58.037 39.130 0.00 0.00 0.00 2.41
674 721 3.815401 CTCCTTCACATTTTCCTCGTTGT 59.185 43.478 0.00 0.00 0.00 3.32
675 722 3.365364 GCTCCTTCACATTTTCCTCGTTG 60.365 47.826 0.00 0.00 0.00 4.10
676 723 2.814336 GCTCCTTCACATTTTCCTCGTT 59.186 45.455 0.00 0.00 0.00 3.85
677 724 2.224523 TGCTCCTTCACATTTTCCTCGT 60.225 45.455 0.00 0.00 0.00 4.18
678 725 2.160417 GTGCTCCTTCACATTTTCCTCG 59.840 50.000 0.00 0.00 36.97 4.63
679 726 2.489722 GGTGCTCCTTCACATTTTCCTC 59.510 50.000 0.00 0.00 38.66 3.71
680 727 2.519013 GGTGCTCCTTCACATTTTCCT 58.481 47.619 0.00 0.00 38.66 3.36
681 728 1.200020 CGGTGCTCCTTCACATTTTCC 59.800 52.381 2.85 0.00 38.66 3.13
682 729 1.880027 ACGGTGCTCCTTCACATTTTC 59.120 47.619 2.85 0.00 38.66 2.29
683 730 1.981256 ACGGTGCTCCTTCACATTTT 58.019 45.000 2.85 0.00 38.66 1.82
684 731 1.608590 CAACGGTGCTCCTTCACATTT 59.391 47.619 2.85 0.00 38.66 2.32
685 732 1.202758 TCAACGGTGCTCCTTCACATT 60.203 47.619 0.00 0.00 38.66 2.71
686 733 0.396435 TCAACGGTGCTCCTTCACAT 59.604 50.000 0.00 0.00 38.66 3.21
687 734 0.179234 TTCAACGGTGCTCCTTCACA 59.821 50.000 0.00 0.00 38.66 3.58
688 735 1.523758 ATTCAACGGTGCTCCTTCAC 58.476 50.000 0.00 0.00 36.28 3.18
689 736 3.627395 ATATTCAACGGTGCTCCTTCA 57.373 42.857 0.00 0.00 0.00 3.02
690 737 4.965119 AAATATTCAACGGTGCTCCTTC 57.035 40.909 0.00 0.00 0.00 3.46
691 738 4.157840 GGAAAATATTCAACGGTGCTCCTT 59.842 41.667 0.00 0.00 37.29 3.36
692 739 3.694566 GGAAAATATTCAACGGTGCTCCT 59.305 43.478 0.00 0.00 37.29 3.69
693 740 3.442273 TGGAAAATATTCAACGGTGCTCC 59.558 43.478 0.00 0.00 37.29 4.70
694 741 4.695217 TGGAAAATATTCAACGGTGCTC 57.305 40.909 0.00 0.00 37.29 4.26
695 742 5.659440 AATGGAAAATATTCAACGGTGCT 57.341 34.783 0.00 0.00 37.29 4.40
696 743 5.004345 CGAAATGGAAAATATTCAACGGTGC 59.996 40.000 0.00 0.00 37.29 5.01
697 744 5.514914 CCGAAATGGAAAATATTCAACGGTG 59.485 40.000 0.00 0.00 42.00 4.94
698 745 5.184287 ACCGAAATGGAAAATATTCAACGGT 59.816 36.000 0.00 0.00 42.00 4.83
699 746 5.514914 CACCGAAATGGAAAATATTCAACGG 59.485 40.000 0.00 0.00 42.00 4.44
700 747 6.090129 ACACCGAAATGGAAAATATTCAACG 58.910 36.000 0.00 0.00 42.00 4.10
701 748 8.024285 TGTACACCGAAATGGAAAATATTCAAC 58.976 33.333 0.00 0.00 42.00 3.18
702 749 8.112016 TGTACACCGAAATGGAAAATATTCAA 57.888 30.769 0.00 0.00 42.00 2.69
703 750 7.689446 TGTACACCGAAATGGAAAATATTCA 57.311 32.000 0.00 0.00 42.00 2.57
704 751 8.402472 TCATGTACACCGAAATGGAAAATATTC 58.598 33.333 0.00 0.00 42.00 1.75
705 752 8.287439 TCATGTACACCGAAATGGAAAATATT 57.713 30.769 0.00 0.00 42.00 1.28
706 753 7.773224 TCTCATGTACACCGAAATGGAAAATAT 59.227 33.333 0.00 0.00 42.00 1.28
707 754 7.106890 TCTCATGTACACCGAAATGGAAAATA 58.893 34.615 0.00 0.00 42.00 1.40
708 755 5.943416 TCTCATGTACACCGAAATGGAAAAT 59.057 36.000 0.00 0.00 42.00 1.82
709 756 5.309638 TCTCATGTACACCGAAATGGAAAA 58.690 37.500 0.00 0.00 42.00 2.29
710 757 4.900684 TCTCATGTACACCGAAATGGAAA 58.099 39.130 0.00 0.00 42.00 3.13
711 758 4.503910 CTCTCATGTACACCGAAATGGAA 58.496 43.478 0.00 0.00 42.00 3.53
712 759 3.118775 CCTCTCATGTACACCGAAATGGA 60.119 47.826 0.00 0.00 42.00 3.41
713 760 3.118775 TCCTCTCATGTACACCGAAATGG 60.119 47.826 0.00 1.20 46.41 3.16
714 761 3.865745 GTCCTCTCATGTACACCGAAATG 59.134 47.826 0.00 0.00 0.00 2.32
715 762 3.428999 CGTCCTCTCATGTACACCGAAAT 60.429 47.826 0.00 0.00 0.00 2.17
716 763 2.094906 CGTCCTCTCATGTACACCGAAA 60.095 50.000 0.00 0.00 0.00 3.46
717 764 1.471287 CGTCCTCTCATGTACACCGAA 59.529 52.381 0.00 0.00 0.00 4.30
718 765 1.092348 CGTCCTCTCATGTACACCGA 58.908 55.000 0.00 0.00 0.00 4.69
719 766 1.092348 TCGTCCTCTCATGTACACCG 58.908 55.000 0.00 0.00 0.00 4.94
720 767 2.952978 AGATCGTCCTCTCATGTACACC 59.047 50.000 0.00 0.00 0.00 4.16
721 768 3.628032 TCAGATCGTCCTCTCATGTACAC 59.372 47.826 0.00 0.00 0.00 2.90
722 769 3.886123 TCAGATCGTCCTCTCATGTACA 58.114 45.455 0.00 0.00 0.00 2.90
723 770 5.009110 TGAATCAGATCGTCCTCTCATGTAC 59.991 44.000 0.00 0.00 0.00 2.90
724 771 5.133221 TGAATCAGATCGTCCTCTCATGTA 58.867 41.667 0.00 0.00 0.00 2.29
725 772 3.956848 TGAATCAGATCGTCCTCTCATGT 59.043 43.478 0.00 0.00 0.00 3.21
726 773 4.581077 TGAATCAGATCGTCCTCTCATG 57.419 45.455 0.00 0.00 0.00 3.07
727 774 4.648762 ACTTGAATCAGATCGTCCTCTCAT 59.351 41.667 0.00 0.00 0.00 2.90
728 775 4.019858 ACTTGAATCAGATCGTCCTCTCA 58.980 43.478 0.00 0.00 0.00 3.27
729 776 4.358851 CACTTGAATCAGATCGTCCTCTC 58.641 47.826 0.00 0.00 0.00 3.20
730 777 3.131933 CCACTTGAATCAGATCGTCCTCT 59.868 47.826 0.00 0.00 0.00 3.69
731 778 3.131223 TCCACTTGAATCAGATCGTCCTC 59.869 47.826 0.00 0.00 0.00 3.71
732 779 3.099905 TCCACTTGAATCAGATCGTCCT 58.900 45.455 0.00 0.00 0.00 3.85
733 780 3.526931 TCCACTTGAATCAGATCGTCC 57.473 47.619 0.00 0.00 0.00 4.79
734 781 5.220739 CCATTTCCACTTGAATCAGATCGTC 60.221 44.000 0.00 0.00 31.67 4.20
735 782 4.637534 CCATTTCCACTTGAATCAGATCGT 59.362 41.667 0.00 0.00 31.67 3.73
736 783 4.877823 TCCATTTCCACTTGAATCAGATCG 59.122 41.667 0.00 0.00 31.67 3.69
737 784 6.118170 TCTCCATTTCCACTTGAATCAGATC 58.882 40.000 0.00 0.00 31.67 2.75
738 785 6.070951 TCTCCATTTCCACTTGAATCAGAT 57.929 37.500 0.00 0.00 31.67 2.90
739 786 5.503634 TCTCCATTTCCACTTGAATCAGA 57.496 39.130 0.00 0.00 31.67 3.27
740 787 5.884232 TGATCTCCATTTCCACTTGAATCAG 59.116 40.000 0.00 0.00 31.67 2.90
741 788 5.818887 TGATCTCCATTTCCACTTGAATCA 58.181 37.500 0.00 0.00 31.67 2.57
742 789 6.558909 GTTGATCTCCATTTCCACTTGAATC 58.441 40.000 0.00 0.00 31.67 2.52
743 790 5.124457 CGTTGATCTCCATTTCCACTTGAAT 59.876 40.000 0.00 0.00 31.67 2.57
744 791 4.455533 CGTTGATCTCCATTTCCACTTGAA 59.544 41.667 0.00 0.00 0.00 2.69
748 795 3.703001 ACGTTGATCTCCATTTCCACT 57.297 42.857 0.00 0.00 0.00 4.00
760 807 4.099573 TCTCCTGAAGGGAATACGTTGATC 59.900 45.833 0.00 0.00 44.58 2.92
766 813 2.810650 CGTTCTCCTGAAGGGAATACG 58.189 52.381 0.00 0.00 44.58 3.06
774 821 1.200252 TCTCTTCGCGTTCTCCTGAAG 59.800 52.381 5.77 0.00 39.28 3.02
776 823 1.464734 ATCTCTTCGCGTTCTCCTGA 58.535 50.000 5.77 0.00 0.00 3.86
777 824 2.287308 CCTATCTCTTCGCGTTCTCCTG 60.287 54.545 5.77 0.00 0.00 3.86
779 826 1.600912 GCCTATCTCTTCGCGTTCTCC 60.601 57.143 5.77 0.00 0.00 3.71
800 847 1.340248 CAGCTGGTATATCCGTTCCGT 59.660 52.381 5.57 0.00 39.52 4.69
801 848 1.611977 TCAGCTGGTATATCCGTTCCG 59.388 52.381 15.13 0.00 39.52 4.30
802 849 3.321111 TCTTCAGCTGGTATATCCGTTCC 59.679 47.826 15.13 0.00 39.52 3.62
804 851 3.961408 ACTCTTCAGCTGGTATATCCGTT 59.039 43.478 15.13 0.00 39.52 4.44
806 853 3.570125 TGACTCTTCAGCTGGTATATCCG 59.430 47.826 15.13 0.00 39.52 4.18
807 854 5.069781 ACTTGACTCTTCAGCTGGTATATCC 59.930 44.000 15.13 0.00 31.71 2.59
808 855 6.155475 ACTTGACTCTTCAGCTGGTATATC 57.845 41.667 15.13 7.50 31.71 1.63
809 856 6.344500 CAACTTGACTCTTCAGCTGGTATAT 58.656 40.000 15.13 0.00 31.71 0.86
810 857 5.724328 CAACTTGACTCTTCAGCTGGTATA 58.276 41.667 15.13 0.00 31.71 1.47
811 858 4.573900 CAACTTGACTCTTCAGCTGGTAT 58.426 43.478 15.13 0.00 31.71 2.73
812 859 3.803715 GCAACTTGACTCTTCAGCTGGTA 60.804 47.826 15.13 1.26 31.71 3.25
858 908 4.519350 GGGAAAGACTGAACGGAGATTTTT 59.481 41.667 0.00 0.00 0.00 1.94
862 912 2.234908 CAGGGAAAGACTGAACGGAGAT 59.765 50.000 0.00 0.00 38.20 2.75
866 916 0.955919 GCCAGGGAAAGACTGAACGG 60.956 60.000 0.00 0.00 38.20 4.44
914 965 1.078637 GGTAGGAAAGTGGACGGCC 60.079 63.158 0.00 0.00 0.00 6.13
995 1056 4.148825 AGGAGGTCGCCATCGTGC 62.149 66.667 0.00 0.00 36.96 5.34
1048 1115 0.179009 CCGGCAATGATGGAGGATGT 60.179 55.000 0.00 0.00 0.00 3.06
1364 1443 1.232909 TCCCCAACTTTTACCCACCA 58.767 50.000 0.00 0.00 0.00 4.17
1370 1449 5.077564 ACTTCTGGAATCCCCAACTTTTAC 58.922 41.667 0.00 0.00 46.07 2.01
1465 1545 2.515926 TGGAACTCGCTCATCATAGC 57.484 50.000 0.00 0.00 39.21 2.97
1543 1623 0.107945 GCCTTGCTCGACAGGAGAAT 60.108 55.000 4.96 0.00 46.23 2.40
1638 1719 4.493547 CGAAGAATTCTGCTCTGAAGACT 58.506 43.478 9.17 0.00 44.75 3.24
1659 1740 0.535335 TTCCCTCCTTCATCGAACCG 59.465 55.000 0.00 0.00 0.00 4.44
1697 1778 1.943046 GCGCCTCCATGTCATCTATGG 60.943 57.143 0.00 0.00 45.17 2.74
1764 1853 7.201714 GCAGATTCTTCTTGTTGCTTCATATCT 60.202 37.037 0.00 0.00 0.00 1.98
1884 1979 2.758327 ATGGTCGCCACGGAGCTA 60.758 61.111 0.50 0.00 35.80 3.32
1932 2164 0.750911 AGCATGCTGCCTTAAGCTCC 60.751 55.000 21.98 0.00 46.52 4.70
2010 2621 1.546029 GGGCAGCTCTTGGTTAAAAGG 59.454 52.381 0.00 0.00 0.00 3.11
2047 2658 1.052124 ACAACCTGGGACACGAGGAA 61.052 55.000 0.00 0.00 44.67 3.36
2126 2747 4.520179 TCTGGACTGATGATTGTGAATGG 58.480 43.478 0.00 0.00 0.00 3.16
2131 2752 6.427853 TGTTACTTTCTGGACTGATGATTGTG 59.572 38.462 0.00 0.00 0.00 3.33
2132 2753 6.533730 TGTTACTTTCTGGACTGATGATTGT 58.466 36.000 0.00 0.00 0.00 2.71
2136 2757 5.924356 TGTTGTTACTTTCTGGACTGATGA 58.076 37.500 0.00 0.00 0.00 2.92
2141 2762 5.364157 AGAGTCTGTTGTTACTTTCTGGACT 59.636 40.000 0.00 0.00 34.78 3.85
2143 2764 5.601662 CAGAGTCTGTTGTTACTTTCTGGA 58.398 41.667 12.28 0.00 0.00 3.86
2151 2772 5.683859 CAGATTTGCAGAGTCTGTTGTTAC 58.316 41.667 21.06 9.06 35.72 2.50
2153 2774 4.825546 CAGATTTGCAGAGTCTGTTGTT 57.174 40.909 21.06 4.91 35.72 2.83
2167 2788 2.283298 ACTGGATAGCACGCAGATTTG 58.717 47.619 0.00 0.00 0.00 2.32
2168 2789 2.698855 ACTGGATAGCACGCAGATTT 57.301 45.000 0.00 0.00 0.00 2.17
2169 2790 4.342862 AATACTGGATAGCACGCAGATT 57.657 40.909 0.00 0.00 0.00 2.40
2170 2791 4.524714 ACTAATACTGGATAGCACGCAGAT 59.475 41.667 0.00 0.00 0.00 2.90
2171 2792 3.889538 ACTAATACTGGATAGCACGCAGA 59.110 43.478 0.00 0.00 0.00 4.26
2210 2845 3.890756 ACATTGCATCCTTGTGAGAACAA 59.109 39.130 0.00 0.00 0.00 2.83
2244 2879 6.642707 AAGGATATGACGACCAAACAAAAA 57.357 33.333 0.00 0.00 0.00 1.94
2246 2881 5.563867 GCAAAGGATATGACGACCAAACAAA 60.564 40.000 0.00 0.00 0.00 2.83
2269 2904 5.353123 TGTCAAACCATTAATAGTTCTCCGC 59.647 40.000 0.00 0.00 0.00 5.54
2270 2905 6.978343 TGTCAAACCATTAATAGTTCTCCG 57.022 37.500 0.00 0.00 0.00 4.63
2281 2916 7.987750 TTGTACATAGCTTGTCAAACCATTA 57.012 32.000 0.00 0.00 39.87 1.90
2286 2921 5.757886 TGCTTTGTACATAGCTTGTCAAAC 58.242 37.500 30.13 7.18 39.87 2.93
2293 2928 5.070001 TGGTTCTTGCTTTGTACATAGCTT 58.930 37.500 30.13 0.00 36.53 3.74
2302 2937 2.481795 GCACACATGGTTCTTGCTTTGT 60.482 45.455 0.00 0.00 0.00 2.83
2303 2938 2.129607 GCACACATGGTTCTTGCTTTG 58.870 47.619 0.00 0.00 0.00 2.77
2318 2953 8.480643 AACTAACTGATCACTAATTAGCACAC 57.519 34.615 12.54 3.39 0.00 3.82
2334 2969 5.510861 GGCTTACAAGGTCTGAACTAACTGA 60.511 44.000 0.00 0.00 0.00 3.41
2348 2983 5.562890 GCAACTAGTTGAAAGGCTTACAAGG 60.563 44.000 34.43 6.90 42.93 3.61
2379 3014 3.318839 TCAGAAAGACACTGGGCAAAATG 59.681 43.478 0.00 0.00 36.22 2.32
2383 3018 2.886523 CAATCAGAAAGACACTGGGCAA 59.113 45.455 0.00 0.00 36.22 4.52
2384 3019 2.507484 CAATCAGAAAGACACTGGGCA 58.493 47.619 0.00 0.00 36.22 5.36
2392 3027 6.545504 TTGTTACAGAGCAATCAGAAAGAC 57.454 37.500 0.00 0.00 0.00 3.01
2396 3031 5.478407 TCGATTGTTACAGAGCAATCAGAA 58.522 37.500 14.81 1.02 46.63 3.02
2413 3048 0.028374 TGCAATGCTCGCATCGATTG 59.972 50.000 6.82 2.01 35.31 2.67
2417 3052 1.297378 CAGTGCAATGCTCGCATCG 60.297 57.895 6.82 0.00 42.32 3.84
2419 3054 2.488355 GCAGTGCAATGCTCGCAT 59.512 55.556 30.37 0.00 42.32 4.73
2432 3067 1.072806 TGCATGAACAGAGGAAGCAGT 59.927 47.619 0.00 0.00 0.00 4.40
2436 3071 1.457346 GGGTGCATGAACAGAGGAAG 58.543 55.000 6.08 0.00 0.00 3.46
2442 3077 0.883833 GAACAGGGGTGCATGAACAG 59.116 55.000 6.08 0.00 0.00 3.16
2443 3078 0.184692 TGAACAGGGGTGCATGAACA 59.815 50.000 6.08 0.00 0.00 3.18
2462 3097 9.461312 TCTGAACCTGCTAAATAAACATGTAAT 57.539 29.630 0.00 0.00 0.00 1.89
2463 3098 8.856153 TCTGAACCTGCTAAATAAACATGTAA 57.144 30.769 0.00 0.00 0.00 2.41
2465 3100 7.944729 ATCTGAACCTGCTAAATAAACATGT 57.055 32.000 0.00 0.00 0.00 3.21
2466 3101 9.330063 TCTATCTGAACCTGCTAAATAAACATG 57.670 33.333 0.00 0.00 0.00 3.21
2478 3120 4.953667 TGTCATGATCTATCTGAACCTGC 58.046 43.478 0.00 0.00 0.00 4.85
2493 3135 5.255687 ACCTAGCATTTCAACATGTCATGA 58.744 37.500 19.77 0.00 0.00 3.07
2498 3140 3.511146 CCCAACCTAGCATTTCAACATGT 59.489 43.478 0.00 0.00 0.00 3.21
2499 3141 3.763360 TCCCAACCTAGCATTTCAACATG 59.237 43.478 0.00 0.00 0.00 3.21
2500 3142 4.046286 TCCCAACCTAGCATTTCAACAT 57.954 40.909 0.00 0.00 0.00 2.71
2534 3178 3.826265 AACCCGCCAAGGCCAATGT 62.826 57.895 5.01 0.00 39.21 2.71
2559 3203 6.934056 TGACATAACTGCAGCCATAATTTTT 58.066 32.000 15.27 0.00 0.00 1.94
2560 3204 6.528537 TGACATAACTGCAGCCATAATTTT 57.471 33.333 15.27 0.00 0.00 1.82
2561 3205 6.720112 ATGACATAACTGCAGCCATAATTT 57.280 33.333 15.27 0.66 0.00 1.82
2562 3206 6.720112 AATGACATAACTGCAGCCATAATT 57.280 33.333 15.27 1.48 0.00 1.40
2563 3207 6.509656 CAAATGACATAACTGCAGCCATAAT 58.490 36.000 15.27 0.00 0.00 1.28
2568 3357 2.094597 TGCAAATGACATAACTGCAGCC 60.095 45.455 15.27 0.00 38.06 4.85
2569 3358 3.220507 TGCAAATGACATAACTGCAGC 57.779 42.857 15.27 0.00 38.06 5.25
2573 3362 6.855836 ACCATACTTGCAAATGACATAACTG 58.144 36.000 11.85 0.00 0.00 3.16
2578 3367 4.081531 CCCAACCATACTTGCAAATGACAT 60.082 41.667 11.85 0.00 0.00 3.06
2582 3371 4.741321 ATCCCAACCATACTTGCAAATG 57.259 40.909 0.00 2.05 0.00 2.32
2583 3372 4.776837 TGAATCCCAACCATACTTGCAAAT 59.223 37.500 0.00 0.00 0.00 2.32
2587 3376 4.402155 TCATTGAATCCCAACCATACTTGC 59.598 41.667 0.00 0.00 37.63 4.01
2588 3377 6.071447 TGTTCATTGAATCCCAACCATACTTG 60.071 38.462 1.78 0.00 37.63 3.16
2591 3380 5.913137 TGTTCATTGAATCCCAACCATAC 57.087 39.130 1.78 0.00 37.63 2.39
2594 3383 4.021280 CACATGTTCATTGAATCCCAACCA 60.021 41.667 1.78 0.00 37.63 3.67
2597 3386 6.608539 AATCACATGTTCATTGAATCCCAA 57.391 33.333 1.78 0.00 39.41 4.12
2599 3388 6.632909 TGAAATCACATGTTCATTGAATCCC 58.367 36.000 1.78 0.00 0.00 3.85
2600 3389 8.712285 ATTGAAATCACATGTTCATTGAATCC 57.288 30.769 1.78 0.00 33.90 3.01
2601 3390 9.361315 TGATTGAAATCACATGTTCATTGAATC 57.639 29.630 14.26 14.26 40.32 2.52
2627 6166 7.014134 TGGACGGATAATTGCAAATCACATAAT 59.986 33.333 1.71 0.00 0.00 1.28
2629 6168 5.825151 TGGACGGATAATTGCAAATCACATA 59.175 36.000 1.71 0.00 0.00 2.29
2644 6187 7.363268 GGTCTTTAGTAACTTTCTGGACGGATA 60.363 40.741 0.00 0.00 0.00 2.59
2708 6258 7.349859 TCCTTGTGGGAAAAGGACTACATATAT 59.650 37.037 0.75 0.00 46.56 0.86
2712 6262 3.655777 TCCTTGTGGGAAAAGGACTACAT 59.344 43.478 0.75 0.00 46.56 2.29
2794 6348 5.009010 CACATAGCTTGTCAAACTCAAACCT 59.991 40.000 0.00 0.00 36.00 3.50
2796 6350 4.676924 GCACATAGCTTGTCAAACTCAAAC 59.323 41.667 0.00 0.00 41.15 2.93
2797 6351 4.337836 TGCACATAGCTTGTCAAACTCAAA 59.662 37.500 0.00 0.00 45.94 2.69
2798 6352 3.882288 TGCACATAGCTTGTCAAACTCAA 59.118 39.130 0.00 0.00 45.94 3.02
2799 6353 3.475575 TGCACATAGCTTGTCAAACTCA 58.524 40.909 0.00 0.00 45.94 3.41
2800 6354 4.488126 TTGCACATAGCTTGTCAAACTC 57.512 40.909 0.00 0.00 45.94 3.01
2801 6355 4.794003 GCTTTGCACATAGCTTGTCAAACT 60.794 41.667 5.92 0.00 45.94 2.66
2836 6390 8.015185 TCTGAAGTAAGTGTTTAGTTGTAGGT 57.985 34.615 0.00 0.00 33.58 3.08
2837 6391 8.762426 GTTCTGAAGTAAGTGTTTAGTTGTAGG 58.238 37.037 0.00 0.00 33.58 3.18
2838 6392 9.530633 AGTTCTGAAGTAAGTGTTTAGTTGTAG 57.469 33.333 0.00 0.00 33.58 2.74
2839 6393 9.880157 AAGTTCTGAAGTAAGTGTTTAGTTGTA 57.120 29.630 0.00 0.00 33.58 2.41
2840 6394 8.788325 AAGTTCTGAAGTAAGTGTTTAGTTGT 57.212 30.769 0.00 0.00 33.58 3.32
2846 6400 9.000486 GGCTTATAAGTTCTGAAGTAAGTGTTT 58.000 33.333 13.91 0.00 0.00 2.83
2851 6407 8.041323 TGGAAGGCTTATAAGTTCTGAAGTAAG 58.959 37.037 13.91 0.62 0.00 2.34
2855 6411 6.881602 ACTTGGAAGGCTTATAAGTTCTGAAG 59.118 38.462 17.85 15.53 0.00 3.02
2866 6422 4.388577 AGTTGGAACTTGGAAGGCTTAT 57.611 40.909 0.00 0.00 35.21 1.73
2891 6447 0.108377 CGGGCAAAATGTAAAGGGCC 60.108 55.000 0.00 0.00 40.63 5.80
2910 6466 4.045636 ACAGTGCAATGAGAAAAACACC 57.954 40.909 22.73 0.00 0.00 4.16
2915 6471 5.468409 TGATCGTTACAGTGCAATGAGAAAA 59.532 36.000 22.73 6.53 0.00 2.29
2921 6477 3.787634 GCATTGATCGTTACAGTGCAATG 59.212 43.478 13.51 13.51 45.57 2.82
2927 6483 1.927174 GCTCGCATTGATCGTTACAGT 59.073 47.619 0.00 0.00 0.00 3.55
2952 6508 1.284785 CCCAGGATTAAGGAACCAGCA 59.715 52.381 0.00 0.00 0.00 4.41
2963 6519 3.096092 GCCACAAATGTTCCCAGGATTA 58.904 45.455 0.00 0.00 0.00 1.75
2965 6521 1.560505 GCCACAAATGTTCCCAGGAT 58.439 50.000 0.00 0.00 0.00 3.24
2967 6523 0.831288 TGGCCACAAATGTTCCCAGG 60.831 55.000 0.00 0.00 0.00 4.45
2969 6525 0.975135 CATGGCCACAAATGTTCCCA 59.025 50.000 8.16 4.86 32.39 4.37
2970 6526 0.249955 CCATGGCCACAAATGTTCCC 59.750 55.000 8.16 0.00 0.00 3.97
2972 6528 3.142124 GCCATGGCCACAAATGTTC 57.858 52.632 27.24 0.00 34.56 3.18
2983 6539 0.179468 TAAACCTACGAGGCCATGGC 59.821 55.000 29.47 29.47 39.63 4.40
2984 6540 2.930826 ATAAACCTACGAGGCCATGG 57.069 50.000 7.63 7.63 39.63 3.66
2985 6541 4.866508 TCTATAAACCTACGAGGCCATG 57.133 45.455 5.01 0.00 39.63 3.66
2986 6542 6.270231 AGAAATCTATAAACCTACGAGGCCAT 59.730 38.462 5.01 0.00 39.63 4.40
2987 6543 5.601313 AGAAATCTATAAACCTACGAGGCCA 59.399 40.000 5.01 0.00 39.63 5.36
2988 6544 6.099159 AGAAATCTATAAACCTACGAGGCC 57.901 41.667 0.00 0.00 39.63 5.19
2989 6545 9.141400 CATAAGAAATCTATAAACCTACGAGGC 57.859 37.037 0.00 0.00 39.63 4.70
2990 6546 9.640963 CCATAAGAAATCTATAAACCTACGAGG 57.359 37.037 0.00 0.00 42.49 4.63
2991 6547 9.141400 GCCATAAGAAATCTATAAACCTACGAG 57.859 37.037 0.00 0.00 0.00 4.18
2992 6548 8.867097 AGCCATAAGAAATCTATAAACCTACGA 58.133 33.333 0.00 0.00 0.00 3.43
2996 6552 8.095169 CCGTAGCCATAAGAAATCTATAAACCT 58.905 37.037 0.00 0.00 0.00 3.50
2998 6554 8.828688 ACCGTAGCCATAAGAAATCTATAAAC 57.171 34.615 0.00 0.00 0.00 2.01
3001 6557 8.248945 GCTAACCGTAGCCATAAGAAATCTATA 58.751 37.037 0.00 0.00 46.10 1.31
3002 6558 7.097834 GCTAACCGTAGCCATAAGAAATCTAT 58.902 38.462 0.00 0.00 46.10 1.98
3004 6560 5.298347 GCTAACCGTAGCCATAAGAAATCT 58.702 41.667 0.00 0.00 46.10 2.40
3005 6561 5.593183 GCTAACCGTAGCCATAAGAAATC 57.407 43.478 0.00 0.00 46.10 2.17
3019 6656 5.337330 GCCACTATTATATCAGGCTAACCGT 60.337 44.000 0.00 0.00 42.76 4.83
3026 6663 3.937706 CAGCAGCCACTATTATATCAGGC 59.062 47.826 0.00 0.00 42.31 4.85
3027 6664 4.934001 CACAGCAGCCACTATTATATCAGG 59.066 45.833 0.00 0.00 0.00 3.86
3028 6665 5.787380 TCACAGCAGCCACTATTATATCAG 58.213 41.667 0.00 0.00 0.00 2.90
3029 6666 5.806654 TCACAGCAGCCACTATTATATCA 57.193 39.130 0.00 0.00 0.00 2.15
3030 6667 9.689976 CTATATCACAGCAGCCACTATTATATC 57.310 37.037 0.00 0.00 0.00 1.63
3031 6668 9.206690 ACTATATCACAGCAGCCACTATTATAT 57.793 33.333 0.00 0.00 0.00 0.86
3032 6669 8.470002 CACTATATCACAGCAGCCACTATTATA 58.530 37.037 0.00 0.00 0.00 0.98
3033 6670 7.179160 TCACTATATCACAGCAGCCACTATTAT 59.821 37.037 0.00 0.00 0.00 1.28
3034 6671 6.493458 TCACTATATCACAGCAGCCACTATTA 59.507 38.462 0.00 0.00 0.00 0.98
3035 6672 5.305386 TCACTATATCACAGCAGCCACTATT 59.695 40.000 0.00 0.00 0.00 1.73
3036 6673 4.835056 TCACTATATCACAGCAGCCACTAT 59.165 41.667 0.00 0.00 0.00 2.12
3037 6674 4.215109 TCACTATATCACAGCAGCCACTA 58.785 43.478 0.00 0.00 0.00 2.74
3038 6675 3.033909 TCACTATATCACAGCAGCCACT 58.966 45.455 0.00 0.00 0.00 4.00
3039 6676 3.459232 TCACTATATCACAGCAGCCAC 57.541 47.619 0.00 0.00 0.00 5.01
3040 6677 3.899980 AGATCACTATATCACAGCAGCCA 59.100 43.478 0.00 0.00 0.00 4.75
3041 6678 4.021632 TCAGATCACTATATCACAGCAGCC 60.022 45.833 0.00 0.00 0.00 4.85
3042 6679 5.131594 TCAGATCACTATATCACAGCAGC 57.868 43.478 0.00 0.00 0.00 5.25
3043 6680 6.921914 TCATCAGATCACTATATCACAGCAG 58.078 40.000 0.00 0.00 0.00 4.24
3044 6681 6.906157 TCATCAGATCACTATATCACAGCA 57.094 37.500 0.00 0.00 0.00 4.41
3045 6682 6.812656 CCTTCATCAGATCACTATATCACAGC 59.187 42.308 0.00 0.00 0.00 4.40
3046 6683 6.812656 GCCTTCATCAGATCACTATATCACAG 59.187 42.308 0.00 0.00 0.00 3.66
3047 6684 6.496218 AGCCTTCATCAGATCACTATATCACA 59.504 38.462 0.00 0.00 0.00 3.58
3048 6685 6.812656 CAGCCTTCATCAGATCACTATATCAC 59.187 42.308 0.00 0.00 0.00 3.06
3049 6686 6.496218 ACAGCCTTCATCAGATCACTATATCA 59.504 38.462 0.00 0.00 0.00 2.15
3050 6687 6.812656 CACAGCCTTCATCAGATCACTATATC 59.187 42.308 0.00 0.00 0.00 1.63
3051 6688 6.496218 TCACAGCCTTCATCAGATCACTATAT 59.504 38.462 0.00 0.00 0.00 0.86
3052 6689 5.835280 TCACAGCCTTCATCAGATCACTATA 59.165 40.000 0.00 0.00 0.00 1.31
3053 6690 4.652881 TCACAGCCTTCATCAGATCACTAT 59.347 41.667 0.00 0.00 0.00 2.12
3054 6691 4.026052 TCACAGCCTTCATCAGATCACTA 58.974 43.478 0.00 0.00 0.00 2.74
3055 6692 2.836372 TCACAGCCTTCATCAGATCACT 59.164 45.455 0.00 0.00 0.00 3.41
3056 6693 3.196463 CTCACAGCCTTCATCAGATCAC 58.804 50.000 0.00 0.00 0.00 3.06
3057 6694 2.169978 CCTCACAGCCTTCATCAGATCA 59.830 50.000 0.00 0.00 0.00 2.92
3058 6695 2.170187 ACCTCACAGCCTTCATCAGATC 59.830 50.000 0.00 0.00 0.00 2.75
3059 6696 2.194859 ACCTCACAGCCTTCATCAGAT 58.805 47.619 0.00 0.00 0.00 2.90
3060 6697 1.649321 ACCTCACAGCCTTCATCAGA 58.351 50.000 0.00 0.00 0.00 3.27
3061 6698 2.354259 GAACCTCACAGCCTTCATCAG 58.646 52.381 0.00 0.00 0.00 2.90
3062 6699 1.338105 CGAACCTCACAGCCTTCATCA 60.338 52.381 0.00 0.00 0.00 3.07
3063 6700 1.363744 CGAACCTCACAGCCTTCATC 58.636 55.000 0.00 0.00 0.00 2.92
3064 6701 0.036010 CCGAACCTCACAGCCTTCAT 60.036 55.000 0.00 0.00 0.00 2.57
3065 6702 1.371183 CCGAACCTCACAGCCTTCA 59.629 57.895 0.00 0.00 0.00 3.02
3066 6703 2.035442 GCCGAACCTCACAGCCTTC 61.035 63.158 0.00 0.00 0.00 3.46
3067 6704 2.032681 GCCGAACCTCACAGCCTT 59.967 61.111 0.00 0.00 0.00 4.35
3068 6705 4.021925 GGCCGAACCTCACAGCCT 62.022 66.667 0.00 0.00 40.57 4.58
3077 6714 1.675116 GGAAGTACTTCAGGCCGAACC 60.675 57.143 31.30 12.23 41.20 3.62
3078 6715 1.001633 TGGAAGTACTTCAGGCCGAAC 59.998 52.381 31.30 15.30 41.20 3.95
3079 6716 1.344065 TGGAAGTACTTCAGGCCGAA 58.656 50.000 31.30 3.26 41.20 4.30
3080 6717 1.568504 ATGGAAGTACTTCAGGCCGA 58.431 50.000 31.30 11.97 41.20 5.54
3081 6718 2.167693 TGTATGGAAGTACTTCAGGCCG 59.832 50.000 31.30 0.00 41.20 6.13
3082 6719 3.906720 TGTATGGAAGTACTTCAGGCC 57.093 47.619 31.30 18.44 41.20 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.