Multiple sequence alignment - TraesCS5B01G384400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G384400 chr5B 100.000 4554 0 0 1 4554 563136359 563140912 0.000000e+00 8410.0
1 TraesCS5B01G384400 chr5B 77.329 569 70 27 2496 3011 304152659 304152097 9.650000e-72 281.0
2 TraesCS5B01G384400 chr5A 92.450 1563 92 13 2022 3571 578053245 578054794 0.000000e+00 2209.0
3 TraesCS5B01G384400 chr5A 84.003 1169 98 35 390 1501 578051154 578052290 0.000000e+00 1040.0
4 TraesCS5B01G384400 chr5A 86.478 917 53 36 3608 4500 578054892 578055761 0.000000e+00 941.0
5 TraesCS5B01G384400 chr5A 85.870 736 88 9 1554 2282 578052499 578053225 0.000000e+00 769.0
6 TraesCS5B01G384400 chr5A 88.235 238 24 4 161 397 578049633 578049867 9.650000e-72 281.0
7 TraesCS5B01G384400 chr5D 84.546 2103 203 60 1532 3571 459070453 459072496 0.000000e+00 1971.0
8 TraesCS5B01G384400 chr5D 87.584 1039 81 25 476 1490 459069431 459070445 0.000000e+00 1160.0
9 TraesCS5B01G384400 chr5D 81.784 796 55 42 3608 4359 459072595 459073344 6.570000e-163 584.0
10 TraesCS5B01G384400 chr5D 91.765 340 26 2 146 485 459068907 459069244 5.330000e-129 472.0
11 TraesCS5B01G384400 chr2B 77.680 569 68 27 2496 3011 278329899 278329337 4.460000e-75 292.0
12 TraesCS5B01G384400 chr2B 77.249 567 70 31 2496 3009 392820139 392819579 1.250000e-70 278.0
13 TraesCS5B01G384400 chr2B 77.168 565 72 26 2496 3009 382669431 382669989 4.490000e-70 276.0
14 TraesCS5B01G384400 chr2B 92.199 141 11 0 4 144 51073948 51073808 2.780000e-47 200.0
15 TraesCS5B01G384400 chr2B 91.367 139 12 0 4 142 46964736 46964598 1.670000e-44 191.0
16 TraesCS5B01G384400 chr2B 90.845 142 13 0 1 142 454543451 454543592 1.670000e-44 191.0
17 TraesCS5B01G384400 chr2B 91.429 140 11 1 5 144 787798103 787798241 1.670000e-44 191.0
18 TraesCS5B01G384400 chr2B 90.714 140 12 1 5 144 72913687 72913549 7.780000e-43 185.0
19 TraesCS5B01G384400 chr4D 77.153 569 71 27 2496 3011 332636940 332636378 4.490000e-70 276.0
20 TraesCS5B01G384400 chr2A 76.855 566 73 31 2496 3009 399662131 399661572 2.700000e-67 267.0
21 TraesCS5B01G384400 chr2A 79.097 421 54 18 2619 3009 397622132 397622548 4.520000e-65 259.0
22 TraesCS5B01G384400 chr3B 90.071 141 14 0 4 144 783694285 783694145 2.800000e-42 183.0
23 TraesCS5B01G384400 chr2D 89.583 144 15 0 1 144 386848171 386848314 2.800000e-42 183.0
24 TraesCS5B01G384400 chr2D 85.811 148 21 0 1 148 613454021 613454168 1.700000e-34 158.0
25 TraesCS5B01G384400 chr7A 88.112 143 17 0 2 144 664815806 664815664 2.180000e-38 171.0
26 TraesCS5B01G384400 chr7B 87.500 56 6 1 732 786 664208841 664208786 3.800000e-06 63.9
27 TraesCS5B01G384400 chr7B 84.127 63 8 2 703 764 49423193 49423132 4.920000e-05 60.2
28 TraesCS5B01G384400 chr7B 100.000 30 0 0 733 762 746210481 746210510 6.360000e-04 56.5
29 TraesCS5B01G384400 chr7B 100.000 30 0 0 733 762 746272866 746272895 6.360000e-04 56.5
30 TraesCS5B01G384400 chr4B 87.273 55 5 2 733 785 32432827 32432773 1.370000e-05 62.1
31 TraesCS5B01G384400 chr3A 79.775 89 14 4 700 786 121403230 121403316 1.370000e-05 62.1
32 TraesCS5B01G384400 chr1D 100.000 32 0 0 740 771 2670482 2670513 4.920000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G384400 chr5B 563136359 563140912 4553 False 8410.00 8410 100.00000 1 4554 1 chr5B.!!$F1 4553
1 TraesCS5B01G384400 chr5B 304152097 304152659 562 True 281.00 281 77.32900 2496 3011 1 chr5B.!!$R1 515
2 TraesCS5B01G384400 chr5A 578049633 578055761 6128 False 1048.00 2209 87.40720 161 4500 5 chr5A.!!$F1 4339
3 TraesCS5B01G384400 chr5D 459068907 459073344 4437 False 1046.75 1971 86.41975 146 4359 4 chr5D.!!$F1 4213
4 TraesCS5B01G384400 chr2B 278329337 278329899 562 True 292.00 292 77.68000 2496 3011 1 chr2B.!!$R4 515
5 TraesCS5B01G384400 chr2B 392819579 392820139 560 True 278.00 278 77.24900 2496 3009 1 chr2B.!!$R5 513
6 TraesCS5B01G384400 chr2B 382669431 382669989 558 False 276.00 276 77.16800 2496 3009 1 chr2B.!!$F1 513
7 TraesCS5B01G384400 chr4D 332636378 332636940 562 True 276.00 276 77.15300 2496 3011 1 chr4D.!!$R1 515
8 TraesCS5B01G384400 chr2A 399661572 399662131 559 True 267.00 267 76.85500 2496 3009 1 chr2A.!!$R1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.036010 AAGACAGATGCCGAACCCTG 60.036 55.0 0.00 0.00 0.00 4.45 F
827 2404 0.037232 TCGAACCACACACACACACA 60.037 50.0 0.00 0.00 0.00 3.72 F
828 2405 0.096281 CGAACCACACACACACACAC 59.904 55.0 0.00 0.00 0.00 3.82 F
979 2605 0.099082 GTTGACTCTAGAGCCGTCGG 59.901 60.0 19.97 6.99 0.00 4.79 F
2689 4790 0.677731 TCAGCTGCCCATACTTGCAC 60.678 55.0 9.47 0.00 33.17 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1591 3380 0.968405 AACCCATGACATGCCAACAC 59.032 50.000 10.10 0.00 0.00 3.32 R
2400 4480 1.474077 CATTCCAGCTTGGTACCTTGC 59.526 52.381 14.36 16.48 39.03 4.01 R
2600 4682 2.303175 ACTGCATGTAAACGGGTTGTT 58.697 42.857 0.00 0.00 44.59 2.83 R
2946 5079 0.529378 ACAGGTCGATGTACGGAACC 59.471 55.000 0.00 0.00 42.82 3.62 R
3822 6060 0.107410 TGCCTTGACTTTCCACACGT 60.107 50.000 0.00 0.00 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.944663 TTTAATTTCAGCTACAACAAAGTAGTG 57.055 29.630 0.00 0.00 42.68 2.74
32 33 6.560253 ATTTCAGCTACAACAAAGTAGTGG 57.440 37.500 0.00 0.00 42.68 4.00
33 34 4.682778 TCAGCTACAACAAAGTAGTGGT 57.317 40.909 0.00 0.00 42.68 4.16
34 35 4.628074 TCAGCTACAACAAAGTAGTGGTC 58.372 43.478 0.00 0.00 42.68 4.02
35 36 3.428870 CAGCTACAACAAAGTAGTGGTCG 59.571 47.826 0.00 0.00 42.68 4.79
36 37 2.735134 GCTACAACAAAGTAGTGGTCGG 59.265 50.000 0.00 0.00 42.68 4.79
37 38 3.553508 GCTACAACAAAGTAGTGGTCGGA 60.554 47.826 0.00 0.00 42.68 4.55
38 39 2.830104 ACAACAAAGTAGTGGTCGGAC 58.170 47.619 0.00 0.00 0.00 4.79
39 40 2.433239 ACAACAAAGTAGTGGTCGGACT 59.567 45.455 8.23 0.00 0.00 3.85
40 41 3.057734 CAACAAAGTAGTGGTCGGACTC 58.942 50.000 8.23 2.24 0.00 3.36
41 42 1.617357 ACAAAGTAGTGGTCGGACTCC 59.383 52.381 8.23 0.00 0.00 3.85
42 43 1.616865 CAAAGTAGTGGTCGGACTCCA 59.383 52.381 8.23 0.00 0.00 3.86
53 54 2.654802 GGACTCCACCGAAGACAGA 58.345 57.895 0.00 0.00 0.00 3.41
54 55 1.187087 GGACTCCACCGAAGACAGAT 58.813 55.000 0.00 0.00 0.00 2.90
55 56 1.134965 GGACTCCACCGAAGACAGATG 60.135 57.143 0.00 0.00 0.00 2.90
56 57 0.247736 ACTCCACCGAAGACAGATGC 59.752 55.000 0.00 0.00 0.00 3.91
57 58 0.460987 CTCCACCGAAGACAGATGCC 60.461 60.000 0.00 0.00 0.00 4.40
58 59 1.811266 CCACCGAAGACAGATGCCG 60.811 63.158 0.00 0.00 0.00 5.69
59 60 1.215382 CACCGAAGACAGATGCCGA 59.785 57.895 0.00 0.00 0.00 5.54
60 61 0.389817 CACCGAAGACAGATGCCGAA 60.390 55.000 0.00 0.00 0.00 4.30
61 62 0.389948 ACCGAAGACAGATGCCGAAC 60.390 55.000 0.00 0.00 0.00 3.95
62 63 1.084370 CCGAAGACAGATGCCGAACC 61.084 60.000 0.00 0.00 0.00 3.62
63 64 1.084370 CGAAGACAGATGCCGAACCC 61.084 60.000 0.00 0.00 0.00 4.11
64 65 0.250513 GAAGACAGATGCCGAACCCT 59.749 55.000 0.00 0.00 0.00 4.34
65 66 0.036010 AAGACAGATGCCGAACCCTG 60.036 55.000 0.00 0.00 0.00 4.45
66 67 0.904865 AGACAGATGCCGAACCCTGA 60.905 55.000 0.00 0.00 0.00 3.86
67 68 0.179000 GACAGATGCCGAACCCTGAT 59.821 55.000 0.00 0.00 0.00 2.90
68 69 1.412710 GACAGATGCCGAACCCTGATA 59.587 52.381 0.00 0.00 0.00 2.15
69 70 2.037772 GACAGATGCCGAACCCTGATAT 59.962 50.000 0.00 0.00 0.00 1.63
70 71 3.239449 ACAGATGCCGAACCCTGATATA 58.761 45.455 0.00 0.00 0.00 0.86
71 72 3.006967 ACAGATGCCGAACCCTGATATAC 59.993 47.826 0.00 0.00 0.00 1.47
72 73 3.259374 CAGATGCCGAACCCTGATATACT 59.741 47.826 0.00 0.00 0.00 2.12
73 74 3.259374 AGATGCCGAACCCTGATATACTG 59.741 47.826 0.00 0.00 0.00 2.74
74 75 2.673258 TGCCGAACCCTGATATACTGA 58.327 47.619 0.00 0.00 0.00 3.41
75 76 3.035363 TGCCGAACCCTGATATACTGAA 58.965 45.455 0.00 0.00 0.00 3.02
76 77 3.452990 TGCCGAACCCTGATATACTGAAA 59.547 43.478 0.00 0.00 0.00 2.69
77 78 3.808174 GCCGAACCCTGATATACTGAAAC 59.192 47.826 0.00 0.00 0.00 2.78
78 79 4.443034 GCCGAACCCTGATATACTGAAACT 60.443 45.833 0.00 0.00 0.00 2.66
79 80 5.050490 CCGAACCCTGATATACTGAAACTG 58.950 45.833 0.00 0.00 0.00 3.16
80 81 5.395324 CCGAACCCTGATATACTGAAACTGT 60.395 44.000 0.00 0.00 0.00 3.55
81 82 6.106673 CGAACCCTGATATACTGAAACTGTT 58.893 40.000 0.00 0.00 0.00 3.16
82 83 6.036083 CGAACCCTGATATACTGAAACTGTTG 59.964 42.308 0.00 0.00 0.00 3.33
83 84 6.374417 ACCCTGATATACTGAAACTGTTGT 57.626 37.500 0.00 0.00 0.00 3.32
84 85 6.407202 ACCCTGATATACTGAAACTGTTGTC 58.593 40.000 0.00 0.00 0.00 3.18
85 86 6.213600 ACCCTGATATACTGAAACTGTTGTCT 59.786 38.462 0.00 0.00 0.00 3.41
86 87 6.536582 CCCTGATATACTGAAACTGTTGTCTG 59.463 42.308 0.00 1.70 0.00 3.51
87 88 7.323420 CCTGATATACTGAAACTGTTGTCTGA 58.677 38.462 0.00 0.00 0.00 3.27
88 89 7.819415 CCTGATATACTGAAACTGTTGTCTGAA 59.181 37.037 0.00 0.00 0.00 3.02
89 90 9.208022 CTGATATACTGAAACTGTTGTCTGAAA 57.792 33.333 0.00 0.00 0.00 2.69
90 91 9.725019 TGATATACTGAAACTGTTGTCTGAAAT 57.275 29.630 0.00 2.34 0.00 2.17
94 95 9.736023 ATACTGAAACTGTTGTCTGAAATTTTC 57.264 29.630 2.05 2.05 0.00 2.29
95 96 7.601856 ACTGAAACTGTTGTCTGAAATTTTCA 58.398 30.769 11.19 11.19 38.17 2.69
96 97 8.253113 ACTGAAACTGTTGTCTGAAATTTTCAT 58.747 29.630 12.04 0.00 39.30 2.57
97 98 9.090692 CTGAAACTGTTGTCTGAAATTTTCATT 57.909 29.630 12.04 1.09 39.30 2.57
100 101 8.579682 AACTGTTGTCTGAAATTTTCATTAGC 57.420 30.769 12.04 5.21 39.30 3.09
101 102 7.715657 ACTGTTGTCTGAAATTTTCATTAGCA 58.284 30.769 12.04 8.77 39.30 3.49
102 103 8.196771 ACTGTTGTCTGAAATTTTCATTAGCAA 58.803 29.630 12.04 11.24 39.30 3.91
103 104 8.939201 TGTTGTCTGAAATTTTCATTAGCAAA 57.061 26.923 12.04 0.52 39.30 3.68
104 105 9.033481 TGTTGTCTGAAATTTTCATTAGCAAAG 57.967 29.630 12.04 0.00 39.30 2.77
105 106 8.490355 GTTGTCTGAAATTTTCATTAGCAAAGG 58.510 33.333 12.04 0.00 39.30 3.11
106 107 6.646240 TGTCTGAAATTTTCATTAGCAAAGGC 59.354 34.615 12.04 1.14 39.30 4.35
107 108 6.870439 GTCTGAAATTTTCATTAGCAAAGGCT 59.130 34.615 12.04 0.00 45.82 4.58
108 109 7.062722 GTCTGAAATTTTCATTAGCAAAGGCTC 59.937 37.037 12.04 0.00 44.06 4.70
109 110 5.863397 TGAAATTTTCATTAGCAAAGGCTCG 59.137 36.000 7.74 0.00 41.76 5.03
110 111 7.065340 TGAAATTTTCATTAGCAAAGGCTCGG 61.065 38.462 7.74 0.00 41.76 4.63
111 112 9.349336 TGAAATTTTCATTAGCAAAGGCTCGGT 62.349 37.037 7.74 0.00 41.76 4.69
116 117 2.954611 GCAAAGGCTCGGTCCAAC 59.045 61.111 0.00 0.00 36.96 3.77
117 118 2.626780 GCAAAGGCTCGGTCCAACC 61.627 63.158 0.00 0.00 36.96 3.77
118 119 1.073199 CAAAGGCTCGGTCCAACCT 59.927 57.895 0.00 0.00 35.66 3.50
119 120 0.537371 CAAAGGCTCGGTCCAACCTT 60.537 55.000 1.95 1.95 44.37 3.50
120 121 0.537371 AAAGGCTCGGTCCAACCTTG 60.537 55.000 7.63 0.00 41.65 3.61
121 122 3.056328 GGCTCGGTCCAACCTTGC 61.056 66.667 0.00 0.00 35.66 4.01
122 123 2.032681 GCTCGGTCCAACCTTGCT 59.967 61.111 0.00 0.00 35.66 3.91
123 124 1.600916 GCTCGGTCCAACCTTGCTT 60.601 57.895 0.00 0.00 35.66 3.91
124 125 1.172812 GCTCGGTCCAACCTTGCTTT 61.173 55.000 0.00 0.00 35.66 3.51
125 126 0.875059 CTCGGTCCAACCTTGCTTTC 59.125 55.000 0.00 0.00 35.66 2.62
126 127 0.181587 TCGGTCCAACCTTGCTTTCA 59.818 50.000 0.00 0.00 35.66 2.69
127 128 0.310854 CGGTCCAACCTTGCTTTCAC 59.689 55.000 0.00 0.00 35.66 3.18
128 129 1.398692 GGTCCAACCTTGCTTTCACA 58.601 50.000 0.00 0.00 34.73 3.58
129 130 1.963515 GGTCCAACCTTGCTTTCACAT 59.036 47.619 0.00 0.00 34.73 3.21
130 131 2.365293 GGTCCAACCTTGCTTTCACATT 59.635 45.455 0.00 0.00 34.73 2.71
131 132 3.572255 GGTCCAACCTTGCTTTCACATTA 59.428 43.478 0.00 0.00 34.73 1.90
132 133 4.220602 GGTCCAACCTTGCTTTCACATTAT 59.779 41.667 0.00 0.00 34.73 1.28
133 134 5.402398 GTCCAACCTTGCTTTCACATTATC 58.598 41.667 0.00 0.00 0.00 1.75
134 135 4.462483 TCCAACCTTGCTTTCACATTATCC 59.538 41.667 0.00 0.00 0.00 2.59
135 136 4.220382 CCAACCTTGCTTTCACATTATCCA 59.780 41.667 0.00 0.00 0.00 3.41
136 137 5.163513 CAACCTTGCTTTCACATTATCCAC 58.836 41.667 0.00 0.00 0.00 4.02
137 138 4.666512 ACCTTGCTTTCACATTATCCACT 58.333 39.130 0.00 0.00 0.00 4.00
138 139 4.702131 ACCTTGCTTTCACATTATCCACTC 59.298 41.667 0.00 0.00 0.00 3.51
139 140 4.096984 CCTTGCTTTCACATTATCCACTCC 59.903 45.833 0.00 0.00 0.00 3.85
140 141 4.299586 TGCTTTCACATTATCCACTCCA 57.700 40.909 0.00 0.00 0.00 3.86
141 142 4.264253 TGCTTTCACATTATCCACTCCAG 58.736 43.478 0.00 0.00 0.00 3.86
142 143 4.019411 TGCTTTCACATTATCCACTCCAGA 60.019 41.667 0.00 0.00 0.00 3.86
143 144 4.333926 GCTTTCACATTATCCACTCCAGAC 59.666 45.833 0.00 0.00 0.00 3.51
144 145 4.487714 TTCACATTATCCACTCCAGACC 57.512 45.455 0.00 0.00 0.00 3.85
147 148 2.431057 ACATTATCCACTCCAGACCGAC 59.569 50.000 0.00 0.00 0.00 4.79
178 179 5.814783 ACTAGTATTTACACCGTTCTAGCG 58.185 41.667 0.00 0.00 0.00 4.26
233 234 4.422840 TGTGCACAACTTGACATTTCTTG 58.577 39.130 19.28 0.00 0.00 3.02
272 273 6.306199 TGAATGTATATGGCCTTATGCTTGT 58.694 36.000 21.86 10.86 40.92 3.16
273 274 6.777091 TGAATGTATATGGCCTTATGCTTGTT 59.223 34.615 21.86 15.46 40.92 2.83
343 344 3.776340 TGAAAAACGAGTTCCTTTTGGC 58.224 40.909 0.00 0.00 40.12 4.52
399 1692 4.281898 ACCGGCAAAACATACTCTAGTT 57.718 40.909 0.00 0.00 0.00 2.24
439 1732 4.901849 TGAGAGAGAGAAGGAAAGAAACCA 59.098 41.667 0.00 0.00 0.00 3.67
450 1743 0.178990 AAGAAACCAAGCGCCTCCTT 60.179 50.000 2.29 0.00 0.00 3.36
451 1744 0.178990 AGAAACCAAGCGCCTCCTTT 60.179 50.000 2.29 0.00 0.00 3.11
453 1746 2.087462 AAACCAAGCGCCTCCTTTGC 62.087 55.000 2.29 0.00 0.00 3.68
512 2001 2.550978 AGAATAATTCGAGGCACACGG 58.449 47.619 0.00 0.00 43.87 4.94
589 2078 7.437748 TCATAAACGGTTTTTGAAACCATGAT 58.562 30.769 19.75 6.45 40.28 2.45
590 2079 7.928706 TCATAAACGGTTTTTGAAACCATGATT 59.071 29.630 19.75 11.52 40.28 2.57
591 2080 6.993786 AAACGGTTTTTGAAACCATGATTT 57.006 29.167 19.31 11.85 40.28 2.17
592 2081 6.993786 AACGGTTTTTGAAACCATGATTTT 57.006 29.167 19.31 0.00 40.28 1.82
667 2158 8.682128 TCACAAACAATTTAGAGTTCACAAAC 57.318 30.769 0.00 0.00 35.50 2.93
683 2174 5.355596 TCACAAACAATGTTGGAATTCACC 58.644 37.500 7.61 0.00 41.46 4.02
779 2356 5.048713 GTGAACAAATCTTGAAGACCGGAAT 60.049 40.000 9.46 0.00 0.00 3.01
826 2403 0.650512 CTCGAACCACACACACACAC 59.349 55.000 0.00 0.00 0.00 3.82
827 2404 0.037232 TCGAACCACACACACACACA 60.037 50.000 0.00 0.00 0.00 3.72
828 2405 0.096281 CGAACCACACACACACACAC 59.904 55.000 0.00 0.00 0.00 3.82
829 2406 1.160989 GAACCACACACACACACACA 58.839 50.000 0.00 0.00 0.00 3.72
830 2407 0.878416 AACCACACACACACACACAC 59.122 50.000 0.00 0.00 0.00 3.82
859 2456 1.541015 GGCTTGTTTTCTTGGGCCTTG 60.541 52.381 4.53 0.00 36.96 3.61
868 2465 5.878406 TTTCTTGGGCCTTGAACATAAAA 57.122 34.783 4.53 0.00 0.00 1.52
869 2466 5.878406 TTCTTGGGCCTTGAACATAAAAA 57.122 34.783 4.53 0.00 0.00 1.94
936 2562 0.248843 CACAGTCAGCCCTTCCTCTC 59.751 60.000 0.00 0.00 0.00 3.20
937 2563 0.116143 ACAGTCAGCCCTTCCTCTCT 59.884 55.000 0.00 0.00 0.00 3.10
968 2594 0.318762 GTTCCTCCTGCGTTGACTCT 59.681 55.000 0.00 0.00 0.00 3.24
979 2605 0.099082 GTTGACTCTAGAGCCGTCGG 59.901 60.000 19.97 6.99 0.00 4.79
1065 2691 4.379243 AAGCTCTCGGTGGCGGTG 62.379 66.667 0.00 0.00 0.00 4.94
1340 2967 2.567615 GTTCAGCTCTTGTCCCCTTCTA 59.432 50.000 0.00 0.00 0.00 2.10
1389 3020 4.951094 TGAAAAATGTAGGGTTAATCCGGG 59.049 41.667 0.00 0.00 37.00 5.73
1402 3033 3.859061 AATCCGGGAAGGTTCCTAATC 57.141 47.619 0.00 0.00 46.72 1.75
1405 3036 4.209154 TCCGGGAAGGTTCCTAATCTAT 57.791 45.455 0.00 0.00 46.72 1.98
1437 3068 9.003658 AGTTGAAATTCGTCTAATTGACTTCAT 57.996 29.630 0.00 0.00 43.25 2.57
1459 3092 3.768406 TGTTGTTTGATGTGTGAAGTGC 58.232 40.909 0.00 0.00 0.00 4.40
1472 3105 3.953612 TGTGAAGTGCCACTTTTCTTCAT 59.046 39.130 12.09 0.00 44.73 2.57
1474 3107 4.036734 GTGAAGTGCCACTTTTCTTCATCA 59.963 41.667 12.09 0.00 44.73 3.07
1495 3128 8.946085 TCATCACTTATTTCGCTAATTTTGTCT 58.054 29.630 0.00 0.00 0.00 3.41
1558 3347 9.926751 CAAGAGTAGTGTATTTGCTGAATATTG 57.073 33.333 0.00 0.00 33.03 1.90
1567 3356 5.627499 TTTGCTGAATATTGACCAGTGTC 57.373 39.130 0.00 0.00 42.12 3.67
1593 3382 9.410556 CAATTTTGACCCAAGAAGTAATTAGTG 57.589 33.333 0.00 0.00 0.00 2.74
1597 3386 6.001460 TGACCCAAGAAGTAATTAGTGTTGG 58.999 40.000 19.37 19.37 34.05 3.77
1633 3428 6.790232 TTCATAGTAGTGATGGTGATGTGA 57.210 37.500 0.00 0.00 0.00 3.58
1673 3468 1.347378 GGGGGCAATTTGTGATGTTGT 59.653 47.619 0.00 0.00 0.00 3.32
1682 3477 2.867287 TGTGATGTTGTTGTTGCCAG 57.133 45.000 0.00 0.00 0.00 4.85
1695 3490 2.373836 TGTTGCCAGTGTACTACCCATT 59.626 45.455 0.00 0.00 0.00 3.16
1700 3495 4.081309 TGCCAGTGTACTACCCATTAAGAC 60.081 45.833 0.00 0.00 0.00 3.01
1701 3496 4.161754 GCCAGTGTACTACCCATTAAGACT 59.838 45.833 0.00 0.00 0.00 3.24
1704 3499 6.606395 CCAGTGTACTACCCATTAAGACTAGT 59.394 42.308 0.00 0.00 0.00 2.57
1732 3527 1.227943 CACCCACACCACCTGAGTG 60.228 63.158 0.00 0.00 44.12 3.51
1734 3529 2.281761 CCACACCACCTGAGTGCC 60.282 66.667 0.00 0.00 43.09 5.01
1735 3530 2.281761 CACACCACCTGAGTGCCC 60.282 66.667 0.00 0.00 43.09 5.36
1749 3544 1.202879 AGTGCCCGACTTCCATTCAAA 60.203 47.619 0.00 0.00 0.00 2.69
1750 3545 1.611491 GTGCCCGACTTCCATTCAAAA 59.389 47.619 0.00 0.00 0.00 2.44
1800 3595 4.798387 CGAAGCAGTTGCAAAGTTAAACTT 59.202 37.500 0.00 0.00 45.16 2.66
1819 3614 3.953612 ACTTCACTTGCTTGGTTTCATGA 59.046 39.130 0.00 0.00 0.00 3.07
1825 3620 4.405358 ACTTGCTTGGTTTCATGAAAAGGA 59.595 37.500 22.07 14.38 31.33 3.36
1826 3621 5.070847 ACTTGCTTGGTTTCATGAAAAGGAT 59.929 36.000 22.07 1.89 31.33 3.24
1844 3639 6.692849 AAGGATGGTTGCAGATATAGATGA 57.307 37.500 0.00 0.00 0.00 2.92
1848 3643 6.370994 GGATGGTTGCAGATATAGATGAGTTG 59.629 42.308 0.00 0.00 0.00 3.16
1850 3645 6.519382 TGGTTGCAGATATAGATGAGTTGAG 58.481 40.000 0.00 0.00 0.00 3.02
1851 3646 6.098838 TGGTTGCAGATATAGATGAGTTGAGT 59.901 38.462 0.00 0.00 0.00 3.41
1855 3650 9.453572 TTGCAGATATAGATGAGTTGAGTTTTT 57.546 29.630 0.00 0.00 0.00 1.94
1925 3720 8.458843 ACAAGTGTTTAACCTGATATATTGTGC 58.541 33.333 0.00 0.00 0.00 4.57
2033 4109 5.500645 AAGTTAATCTAAAATGCCTCGGC 57.499 39.130 0.00 0.00 42.35 5.54
2065 4141 6.369890 TGCTCATCACTTCATTTAAGAGTGAC 59.630 38.462 7.49 0.00 41.44 3.67
2074 4150 5.720202 TCATTTAAGAGTGACGCACATAGT 58.280 37.500 11.58 0.00 36.74 2.12
2105 4181 4.237724 TCGTTGTCTTGATGTCTTAGCAG 58.762 43.478 0.00 0.00 0.00 4.24
2116 4192 4.937201 TGTCTTAGCAGTCTGTTTGAGA 57.063 40.909 0.93 0.57 0.00 3.27
2159 4238 8.836268 TTTCAATTTACTCATACGGTAAGTGT 57.164 30.769 3.35 3.66 31.94 3.55
2209 4288 5.132648 ACTTACTGCCATCCTGAAATATGGA 59.867 40.000 5.54 0.00 44.62 3.41
2220 4299 7.959658 TCCTGAAATATGGACAATGTTGAAT 57.040 32.000 0.00 0.00 0.00 2.57
2253 4332 7.047891 TGTTTGATTCAGAGAGCGGTTTATAT 58.952 34.615 0.00 0.00 0.00 0.86
2254 4333 7.011389 TGTTTGATTCAGAGAGCGGTTTATATG 59.989 37.037 0.00 0.00 0.00 1.78
2262 4341 8.753133 TCAGAGAGCGGTTTATATGATCATTAT 58.247 33.333 14.65 8.01 0.00 1.28
2277 4356 6.493166 TGATCATTATTTCTGTTGGAAGGGT 58.507 36.000 0.00 0.00 35.16 4.34
2287 4366 1.871676 GTTGGAAGGGTGTTCTTCGTC 59.128 52.381 0.00 0.00 42.88 4.20
2293 4372 4.565028 GGAAGGGTGTTCTTCGTCCTTTAT 60.565 45.833 0.00 0.00 42.88 1.40
2297 4376 5.247792 AGGGTGTTCTTCGTCCTTTATTAGT 59.752 40.000 0.00 0.00 0.00 2.24
2331 4410 5.023452 ACATCCACATGTCCTTACTAGTCA 58.977 41.667 0.00 0.00 39.15 3.41
2332 4411 5.483937 ACATCCACATGTCCTTACTAGTCAA 59.516 40.000 0.00 0.00 39.15 3.18
2394 4474 6.916360 ACCATTTAGTTGTCATGGACATTT 57.084 33.333 4.41 0.00 42.40 2.32
2400 4480 8.870160 TTTAGTTGTCATGGACATTTGAAAAG 57.130 30.769 0.00 0.00 42.40 2.27
2673 4774 2.432628 GGTCGTTGGGTCGCTCAG 60.433 66.667 0.00 0.00 0.00 3.35
2689 4790 0.677731 TCAGCTGCCCATACTTGCAC 60.678 55.000 9.47 0.00 33.17 4.57
2759 4869 5.406649 TGATCGTGGGATTTAATTGTTTGC 58.593 37.500 0.00 0.00 31.51 3.68
2894 5026 2.849880 TTGCTTGCAACAGAGTGAAC 57.150 45.000 3.70 0.00 0.00 3.18
2899 5031 3.803555 CTTGCAACAGAGTGAACGATTC 58.196 45.455 0.00 0.00 0.00 2.52
2972 5105 2.029244 CGTACATCGACCTGTTTCATGC 59.971 50.000 0.00 0.00 42.86 4.06
3051 5189 2.205074 CATAGCCCTGTTGCTTCTACG 58.795 52.381 0.00 0.00 42.75 3.51
3101 5239 0.655733 CGTTGAGCACCACGTTTTCT 59.344 50.000 0.00 0.00 0.00 2.52
3103 5241 2.450160 GTTGAGCACCACGTTTTCTTG 58.550 47.619 0.00 0.00 0.00 3.02
3161 5302 4.648651 TGACTTTTAAACTCCAGCCCTAC 58.351 43.478 0.00 0.00 0.00 3.18
3173 5314 1.049289 AGCCCTACTCCCATTCCGTC 61.049 60.000 0.00 0.00 0.00 4.79
3202 5343 8.567285 AATTAATTATAAATCTCCTGAGGGCG 57.433 34.615 0.00 0.00 0.00 6.13
3203 5344 3.402628 TTATAAATCTCCTGAGGGCGC 57.597 47.619 0.00 0.00 0.00 6.53
3205 5346 0.178068 TAAATCTCCTGAGGGCGCAC 59.822 55.000 10.83 5.15 0.00 5.34
3231 5379 0.933097 ATCTTGTTATGCGCTGCTCG 59.067 50.000 9.73 0.00 42.12 5.03
3235 5383 3.195002 TTATGCGCTGCTCGGTGC 61.195 61.111 9.73 7.26 42.34 5.01
3236 5384 3.664025 TTATGCGCTGCTCGGTGCT 62.664 57.895 9.73 4.24 42.46 4.40
3304 5452 1.023513 CGAAGAAGGCCAAGCTGAGG 61.024 60.000 5.01 1.11 0.00 3.86
3319 5467 1.078567 GAGGCAGCTCAAGGACAGG 60.079 63.158 0.00 0.00 0.00 4.00
3403 5563 2.997897 ACCGACAGGACAGAGCCC 60.998 66.667 0.00 0.00 41.02 5.19
3424 5584 1.153745 CGAGGAAGGGAGCGACAAG 60.154 63.158 0.00 0.00 0.00 3.16
3427 5587 1.079057 GGAAGGGAGCGACAAGGAC 60.079 63.158 0.00 0.00 0.00 3.85
3430 5590 1.415672 AAGGGAGCGACAAGGACCAA 61.416 55.000 0.00 0.00 0.00 3.67
3436 5596 1.569493 CGACAAGGACCAAAGCGTG 59.431 57.895 0.00 0.00 0.00 5.34
3494 5654 3.394836 ACAGCTCCCCCGAGAAGC 61.395 66.667 0.00 0.00 38.52 3.86
3561 5721 0.469331 ACGAGGAAGTGAGTGACCCA 60.469 55.000 0.00 0.00 0.00 4.51
3562 5722 0.679505 CGAGGAAGTGAGTGACCCAA 59.320 55.000 0.00 0.00 0.00 4.12
3564 5724 2.772287 GAGGAAGTGAGTGACCCAAAG 58.228 52.381 0.00 0.00 0.00 2.77
3571 5731 1.202806 TGAGTGACCCAAAGGAAGCAG 60.203 52.381 0.00 0.00 36.73 4.24
3572 5732 0.538287 AGTGACCCAAAGGAAGCAGC 60.538 55.000 0.00 0.00 36.73 5.25
3573 5733 0.538287 GTGACCCAAAGGAAGCAGCT 60.538 55.000 0.00 0.00 36.73 4.24
3579 5781 2.489722 CCCAAAGGAAGCAGCTAGTTTC 59.510 50.000 0.00 0.00 36.79 2.78
3585 5787 4.916183 AGGAAGCAGCTAGTTTCATTTCT 58.084 39.130 0.00 0.00 39.01 2.52
3600 5802 5.215252 TCATTTCTTTTCCTCGAGTGTCT 57.785 39.130 12.31 0.00 0.00 3.41
3602 5804 6.055588 TCATTTCTTTTCCTCGAGTGTCTTT 58.944 36.000 12.31 0.00 0.00 2.52
3606 5808 2.417339 TTCCTCGAGTGTCTTTGTCG 57.583 50.000 12.31 0.00 34.98 4.35
3647 5873 3.198417 TGTGCTTTGCTAGAGGATGATGA 59.802 43.478 0.00 0.00 0.00 2.92
3650 5876 3.743584 GCTTTGCTAGAGGATGATGAGCA 60.744 47.826 0.00 0.00 41.23 4.26
3659 5885 3.624777 AGGATGATGAGCACCGAATTTT 58.375 40.909 0.00 0.00 0.00 1.82
3661 5887 5.192927 AGGATGATGAGCACCGAATTTTAA 58.807 37.500 0.00 0.00 0.00 1.52
3663 5889 6.322201 AGGATGATGAGCACCGAATTTTAATT 59.678 34.615 0.00 0.00 0.00 1.40
3664 5890 7.502226 AGGATGATGAGCACCGAATTTTAATTA 59.498 33.333 0.00 0.00 0.00 1.40
3666 5892 9.121517 GATGATGAGCACCGAATTTTAATTATG 57.878 33.333 0.00 0.00 0.00 1.90
3667 5893 7.995289 TGATGAGCACCGAATTTTAATTATGT 58.005 30.769 0.00 0.00 0.00 2.29
3668 5894 7.914871 TGATGAGCACCGAATTTTAATTATGTG 59.085 33.333 10.12 10.12 35.11 3.21
3669 5895 7.151999 TGAGCACCGAATTTTAATTATGTGT 57.848 32.000 13.55 5.62 34.77 3.72
3670 5896 7.026562 TGAGCACCGAATTTTAATTATGTGTG 58.973 34.615 13.55 8.63 34.77 3.82
3672 5898 6.071616 AGCACCGAATTTTAATTATGTGTGGT 60.072 34.615 13.55 9.56 34.77 4.16
3673 5899 6.034470 GCACCGAATTTTAATTATGTGTGGTG 59.966 38.462 14.23 14.23 43.59 4.17
3674 5900 6.529829 CACCGAATTTTAATTATGTGTGGTGG 59.470 38.462 12.13 1.63 38.58 4.61
3675 5901 6.209788 ACCGAATTTTAATTATGTGTGGTGGT 59.790 34.615 0.00 0.00 0.00 4.16
3676 5902 6.750039 CCGAATTTTAATTATGTGTGGTGGTC 59.250 38.462 0.00 0.00 0.00 4.02
3677 5903 6.750039 CGAATTTTAATTATGTGTGGTGGTCC 59.250 38.462 0.00 0.00 0.00 4.46
3736 5971 2.040178 AGCTCGTAGTTAATGGGGGAG 58.960 52.381 0.00 0.00 0.00 4.30
3748 5983 0.925558 TGGGGGAGCAGATGCATTTA 59.074 50.000 0.00 0.00 45.16 1.40
3768 6003 0.383590 TCCACATGTGTTTTGGCACG 59.616 50.000 23.79 5.90 41.94 5.34
3769 6004 0.102120 CCACATGTGTTTTGGCACGT 59.898 50.000 23.79 0.00 41.94 4.49
3770 6005 1.335182 CCACATGTGTTTTGGCACGTA 59.665 47.619 23.79 0.00 41.94 3.57
3771 6006 2.380660 CACATGTGTTTTGGCACGTAC 58.619 47.619 18.03 0.00 41.94 3.67
3772 6007 2.032799 CACATGTGTTTTGGCACGTACT 59.967 45.455 18.03 0.00 41.94 2.73
3773 6008 3.248841 CACATGTGTTTTGGCACGTACTA 59.751 43.478 18.03 0.00 41.94 1.82
3777 6012 5.594724 TGTGTTTTGGCACGTACTAATAC 57.405 39.130 0.00 0.00 41.94 1.89
3800 6038 4.096984 CACTACCATTTTCATTCCTGAGGC 59.903 45.833 0.00 0.00 31.68 4.70
3820 6058 1.677576 CTGTGCTTTTGCCTGAAGACA 59.322 47.619 0.00 0.00 46.87 3.41
3821 6059 1.677576 TGTGCTTTTGCCTGAAGACAG 59.322 47.619 0.00 0.00 46.87 3.51
3822 6060 1.949525 GTGCTTTTGCCTGAAGACAGA 59.050 47.619 0.00 0.00 46.87 3.41
3823 6061 1.949525 TGCTTTTGCCTGAAGACAGAC 59.050 47.619 0.00 0.00 46.87 3.51
3824 6062 1.069636 GCTTTTGCCTGAAGACAGACG 60.070 52.381 0.00 0.00 43.23 4.18
3825 6063 2.213499 CTTTTGCCTGAAGACAGACGT 58.787 47.619 0.00 0.00 46.03 4.34
3838 6076 2.540101 GACAGACGTGTGGAAAGTCAAG 59.460 50.000 17.83 0.00 39.50 3.02
3852 6091 1.610522 AGTCAAGGCAAGCATGTGTTC 59.389 47.619 0.00 0.00 0.00 3.18
3888 6127 3.871463 GCCTGAACTCCACATGTCTGATT 60.871 47.826 0.00 0.00 0.00 2.57
3892 6131 3.063510 ACTCCACATGTCTGATTGGTG 57.936 47.619 0.00 0.00 0.00 4.17
3900 6139 3.803082 CTGATTGGTGGTGGCGCG 61.803 66.667 0.00 0.00 0.00 6.86
3925 6164 4.430765 TCGCTTTCGGCCCGTCTC 62.431 66.667 1.63 0.00 37.74 3.36
3977 6216 1.009389 CGAGGCGGTGAACAGTCTTC 61.009 60.000 0.00 0.00 0.00 2.87
3999 6238 1.930662 CGCGTGTTTTTCGTGCGTT 60.931 52.632 0.00 0.00 43.50 4.84
4000 6239 1.457448 CGCGTGTTTTTCGTGCGTTT 61.457 50.000 0.00 0.00 43.50 3.60
4001 6240 0.636232 GCGTGTTTTTCGTGCGTTTT 59.364 45.000 0.00 0.00 0.00 2.43
4002 6241 1.057988 GCGTGTTTTTCGTGCGTTTTT 59.942 42.857 0.00 0.00 0.00 1.94
4055 6301 1.801178 CGTTTCCTGGAGTCAAAGCTC 59.199 52.381 0.00 0.00 34.89 4.09
4153 6406 4.329545 TGCTGTTGACCGCCTCCC 62.330 66.667 0.00 0.00 0.00 4.30
4191 6460 1.453928 GCCATTCGGGGAAGGAAGG 60.454 63.158 0.00 0.00 37.04 3.46
4263 6553 1.349357 AGCAAAAGAGGAGGTCAGGTC 59.651 52.381 0.00 0.00 0.00 3.85
4295 6585 6.319658 GCATCTTCTCTTTGATGTTGGGATTA 59.680 38.462 0.00 0.00 41.33 1.75
4299 6589 5.448654 TCTCTTTGATGTTGGGATTATGGG 58.551 41.667 0.00 0.00 0.00 4.00
4313 6606 5.261216 GGATTATGGGTTTTCTTCAGGTGA 58.739 41.667 0.00 0.00 0.00 4.02
4342 6636 0.038251 TGCTGCGTCTTCTTCATCGT 60.038 50.000 0.00 0.00 0.00 3.73
4377 6671 2.507992 CGCTCTTCAGGTGCTCGG 60.508 66.667 0.00 0.00 32.84 4.63
4413 6707 0.253327 GACCGGGGATTCTTTCAGCT 59.747 55.000 6.32 0.00 0.00 4.24
4441 6735 4.828925 GGCGAGCAGAGCAGGGTC 62.829 72.222 0.00 0.00 36.08 4.46
4459 6753 1.743958 GTCTCCTTCTCGATCCGTCAA 59.256 52.381 0.00 0.00 0.00 3.18
4465 6759 0.965866 TCTCGATCCGTCAACTGGCT 60.966 55.000 0.00 0.00 0.00 4.75
4466 6760 0.108615 CTCGATCCGTCAACTGGCTT 60.109 55.000 0.00 0.00 0.00 4.35
4467 6761 0.389817 TCGATCCGTCAACTGGCTTG 60.390 55.000 0.00 0.00 0.00 4.01
4468 6762 1.361668 CGATCCGTCAACTGGCTTGG 61.362 60.000 0.00 0.00 0.00 3.61
4469 6763 0.036388 GATCCGTCAACTGGCTTGGA 60.036 55.000 0.00 0.00 0.00 3.53
4470 6764 0.400213 ATCCGTCAACTGGCTTGGAA 59.600 50.000 0.00 0.00 0.00 3.53
4471 6765 0.250295 TCCGTCAACTGGCTTGGAAG 60.250 55.000 0.00 0.00 0.00 3.46
4491 6785 7.901029 TGGAAGTTGGATCAGATGATATACTC 58.099 38.462 0.00 0.00 34.37 2.59
4500 6794 5.885352 ATCAGATGATATACTCGGTGAGAGG 59.115 44.000 0.00 0.00 41.15 3.69
4501 6795 6.296720 ATCAGATGATATACTCGGTGAGAGGA 60.297 42.308 0.00 0.00 45.50 3.71
4529 6823 4.593597 TTTTTCGTTATCACATCGCTCC 57.406 40.909 0.00 0.00 0.00 4.70
4530 6824 3.520290 TTTCGTTATCACATCGCTCCT 57.480 42.857 0.00 0.00 0.00 3.69
4531 6825 2.776312 TCGTTATCACATCGCTCCTC 57.224 50.000 0.00 0.00 0.00 3.71
4532 6826 2.021457 TCGTTATCACATCGCTCCTCA 58.979 47.619 0.00 0.00 0.00 3.86
4533 6827 2.623416 TCGTTATCACATCGCTCCTCAT 59.377 45.455 0.00 0.00 0.00 2.90
4534 6828 2.728318 CGTTATCACATCGCTCCTCATG 59.272 50.000 0.00 0.00 0.00 3.07
4535 6829 3.722147 GTTATCACATCGCTCCTCATGT 58.278 45.455 0.00 0.00 33.29 3.21
4536 6830 2.996249 ATCACATCGCTCCTCATGTT 57.004 45.000 0.00 0.00 30.48 2.71
4537 6831 2.768253 TCACATCGCTCCTCATGTTT 57.232 45.000 0.00 0.00 30.48 2.83
4538 6832 2.621338 TCACATCGCTCCTCATGTTTC 58.379 47.619 0.00 0.00 30.48 2.78
4539 6833 2.234661 TCACATCGCTCCTCATGTTTCT 59.765 45.455 0.00 0.00 30.48 2.52
4540 6834 2.606725 CACATCGCTCCTCATGTTTCTC 59.393 50.000 0.00 0.00 30.48 2.87
4541 6835 2.499289 ACATCGCTCCTCATGTTTCTCT 59.501 45.455 0.00 0.00 28.27 3.10
4542 6836 3.055530 ACATCGCTCCTCATGTTTCTCTT 60.056 43.478 0.00 0.00 28.27 2.85
4543 6837 3.238108 TCGCTCCTCATGTTTCTCTTC 57.762 47.619 0.00 0.00 0.00 2.87
4544 6838 2.828520 TCGCTCCTCATGTTTCTCTTCT 59.171 45.455 0.00 0.00 0.00 2.85
4545 6839 3.259374 TCGCTCCTCATGTTTCTCTTCTT 59.741 43.478 0.00 0.00 0.00 2.52
4546 6840 3.616379 CGCTCCTCATGTTTCTCTTCTTC 59.384 47.826 0.00 0.00 0.00 2.87
4547 6841 4.620332 CGCTCCTCATGTTTCTCTTCTTCT 60.620 45.833 0.00 0.00 0.00 2.85
4548 6842 5.244755 GCTCCTCATGTTTCTCTTCTTCTT 58.755 41.667 0.00 0.00 0.00 2.52
4549 6843 5.351189 GCTCCTCATGTTTCTCTTCTTCTTC 59.649 44.000 0.00 0.00 0.00 2.87
4550 6844 5.799213 TCCTCATGTTTCTCTTCTTCTTCC 58.201 41.667 0.00 0.00 0.00 3.46
4551 6845 5.545723 TCCTCATGTTTCTCTTCTTCTTCCT 59.454 40.000 0.00 0.00 0.00 3.36
4552 6846 6.043706 TCCTCATGTTTCTCTTCTTCTTCCTT 59.956 38.462 0.00 0.00 0.00 3.36
4553 6847 6.149142 CCTCATGTTTCTCTTCTTCTTCCTTG 59.851 42.308 0.00 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.944663 CACTACTTTGTTGTAGCTGAAATTAAA 57.055 29.630 0.00 0.00 42.53 1.52
6 7 8.564574 CCACTACTTTGTTGTAGCTGAAATTAA 58.435 33.333 0.00 0.00 42.53 1.40
7 8 7.717875 ACCACTACTTTGTTGTAGCTGAAATTA 59.282 33.333 0.00 0.00 42.53 1.40
8 9 6.546034 ACCACTACTTTGTTGTAGCTGAAATT 59.454 34.615 0.00 0.00 42.53 1.82
9 10 6.062095 ACCACTACTTTGTTGTAGCTGAAAT 58.938 36.000 0.00 0.00 42.53 2.17
10 11 5.433526 ACCACTACTTTGTTGTAGCTGAAA 58.566 37.500 0.00 0.00 42.53 2.69
11 12 5.031066 ACCACTACTTTGTTGTAGCTGAA 57.969 39.130 0.00 0.00 42.53 3.02
12 13 4.628074 GACCACTACTTTGTTGTAGCTGA 58.372 43.478 0.00 0.00 42.53 4.26
13 14 3.428870 CGACCACTACTTTGTTGTAGCTG 59.571 47.826 0.00 0.00 42.53 4.24
14 15 3.554337 CCGACCACTACTTTGTTGTAGCT 60.554 47.826 0.00 0.00 42.53 3.32
15 16 2.735134 CCGACCACTACTTTGTTGTAGC 59.265 50.000 0.00 0.00 42.53 3.58
16 17 3.985925 GTCCGACCACTACTTTGTTGTAG 59.014 47.826 0.00 0.00 43.88 2.74
17 18 3.638160 AGTCCGACCACTACTTTGTTGTA 59.362 43.478 0.00 0.00 0.00 2.41
18 19 2.433239 AGTCCGACCACTACTTTGTTGT 59.567 45.455 0.00 0.00 0.00 3.32
19 20 3.057734 GAGTCCGACCACTACTTTGTTG 58.942 50.000 0.00 0.00 0.00 3.33
20 21 2.036862 GGAGTCCGACCACTACTTTGTT 59.963 50.000 0.00 0.00 0.00 2.83
21 22 1.617357 GGAGTCCGACCACTACTTTGT 59.383 52.381 0.00 0.00 0.00 2.83
22 23 1.616865 TGGAGTCCGACCACTACTTTG 59.383 52.381 4.30 0.00 32.03 2.77
23 24 2.005370 TGGAGTCCGACCACTACTTT 57.995 50.000 4.30 0.00 32.03 2.66
24 25 3.759865 TGGAGTCCGACCACTACTT 57.240 52.632 4.30 0.00 32.03 2.24
35 36 1.134965 CATCTGTCTTCGGTGGAGTCC 60.135 57.143 0.73 0.73 0.00 3.85
36 37 1.737363 GCATCTGTCTTCGGTGGAGTC 60.737 57.143 0.00 0.00 0.00 3.36
37 38 0.247736 GCATCTGTCTTCGGTGGAGT 59.752 55.000 0.00 0.00 0.00 3.85
38 39 0.460987 GGCATCTGTCTTCGGTGGAG 60.461 60.000 0.00 0.00 0.00 3.86
39 40 1.596934 GGCATCTGTCTTCGGTGGA 59.403 57.895 0.00 0.00 0.00 4.02
40 41 1.811266 CGGCATCTGTCTTCGGTGG 60.811 63.158 0.00 0.00 0.00 4.61
41 42 0.389817 TTCGGCATCTGTCTTCGGTG 60.390 55.000 0.00 0.00 0.00 4.94
42 43 0.389948 GTTCGGCATCTGTCTTCGGT 60.390 55.000 0.00 0.00 0.00 4.69
43 44 1.084370 GGTTCGGCATCTGTCTTCGG 61.084 60.000 0.00 0.00 0.00 4.30
44 45 1.084370 GGGTTCGGCATCTGTCTTCG 61.084 60.000 0.00 0.00 0.00 3.79
45 46 0.250513 AGGGTTCGGCATCTGTCTTC 59.749 55.000 0.00 0.00 0.00 2.87
46 47 0.036010 CAGGGTTCGGCATCTGTCTT 60.036 55.000 0.00 0.00 0.00 3.01
47 48 0.904865 TCAGGGTTCGGCATCTGTCT 60.905 55.000 0.00 0.00 0.00 3.41
48 49 0.179000 ATCAGGGTTCGGCATCTGTC 59.821 55.000 0.00 0.00 0.00 3.51
49 50 1.496060 TATCAGGGTTCGGCATCTGT 58.504 50.000 0.00 0.00 0.00 3.41
50 51 2.847327 ATATCAGGGTTCGGCATCTG 57.153 50.000 0.00 0.00 0.00 2.90
51 52 3.259374 CAGTATATCAGGGTTCGGCATCT 59.741 47.826 0.00 0.00 0.00 2.90
52 53 3.258372 TCAGTATATCAGGGTTCGGCATC 59.742 47.826 0.00 0.00 0.00 3.91
53 54 3.239449 TCAGTATATCAGGGTTCGGCAT 58.761 45.455 0.00 0.00 0.00 4.40
54 55 2.673258 TCAGTATATCAGGGTTCGGCA 58.327 47.619 0.00 0.00 0.00 5.69
55 56 3.746045 TTCAGTATATCAGGGTTCGGC 57.254 47.619 0.00 0.00 0.00 5.54
56 57 5.050490 CAGTTTCAGTATATCAGGGTTCGG 58.950 45.833 0.00 0.00 0.00 4.30
57 58 5.661458 ACAGTTTCAGTATATCAGGGTTCG 58.339 41.667 0.00 0.00 0.00 3.95
58 59 6.879458 ACAACAGTTTCAGTATATCAGGGTTC 59.121 38.462 0.00 0.00 0.00 3.62
59 60 6.779860 ACAACAGTTTCAGTATATCAGGGTT 58.220 36.000 0.00 0.00 0.00 4.11
60 61 6.213600 AGACAACAGTTTCAGTATATCAGGGT 59.786 38.462 0.00 0.00 0.00 4.34
61 62 6.536582 CAGACAACAGTTTCAGTATATCAGGG 59.463 42.308 0.00 0.00 0.00 4.45
62 63 7.323420 TCAGACAACAGTTTCAGTATATCAGG 58.677 38.462 0.00 0.00 0.00 3.86
63 64 8.763049 TTCAGACAACAGTTTCAGTATATCAG 57.237 34.615 0.00 0.00 0.00 2.90
64 65 9.725019 ATTTCAGACAACAGTTTCAGTATATCA 57.275 29.630 0.00 0.00 0.00 2.15
68 69 9.736023 GAAAATTTCAGACAACAGTTTCAGTAT 57.264 29.630 0.11 0.00 0.00 2.12
69 70 8.735315 TGAAAATTTCAGACAACAGTTTCAGTA 58.265 29.630 4.03 0.00 34.08 2.74
70 71 7.601856 TGAAAATTTCAGACAACAGTTTCAGT 58.398 30.769 4.03 0.00 34.08 3.41
71 72 8.638685 ATGAAAATTTCAGACAACAGTTTCAG 57.361 30.769 14.10 0.00 43.98 3.02
74 75 9.034544 GCTAATGAAAATTTCAGACAACAGTTT 57.965 29.630 14.10 3.15 43.98 2.66
75 76 8.196771 TGCTAATGAAAATTTCAGACAACAGTT 58.803 29.630 14.10 3.80 43.98 3.16
76 77 7.715657 TGCTAATGAAAATTTCAGACAACAGT 58.284 30.769 14.10 0.00 43.98 3.55
77 78 8.578308 TTGCTAATGAAAATTTCAGACAACAG 57.422 30.769 14.10 5.83 43.98 3.16
78 79 8.939201 TTTGCTAATGAAAATTTCAGACAACA 57.061 26.923 14.10 5.98 43.98 3.33
79 80 8.490355 CCTTTGCTAATGAAAATTTCAGACAAC 58.510 33.333 14.10 3.64 43.98 3.32
80 81 7.171337 GCCTTTGCTAATGAAAATTTCAGACAA 59.829 33.333 14.10 11.52 37.56 3.18
81 82 6.646240 GCCTTTGCTAATGAAAATTTCAGACA 59.354 34.615 14.10 6.61 37.56 3.41
82 83 7.053710 GCCTTTGCTAATGAAAATTTCAGAC 57.946 36.000 14.10 4.28 37.56 3.51
99 100 2.626780 GGTTGGACCGAGCCTTTGC 61.627 63.158 0.00 0.00 37.95 3.68
100 101 0.537371 AAGGTTGGACCGAGCCTTTG 60.537 55.000 7.34 0.00 44.90 2.77
101 102 0.537371 CAAGGTTGGACCGAGCCTTT 60.537 55.000 7.34 0.00 44.90 3.11
102 103 1.073199 CAAGGTTGGACCGAGCCTT 59.927 57.895 7.34 7.65 44.90 4.35
103 104 2.750350 CAAGGTTGGACCGAGCCT 59.250 61.111 7.34 1.46 44.90 4.58
104 105 3.056328 GCAAGGTTGGACCGAGCC 61.056 66.667 7.34 0.00 44.90 4.70
105 106 1.172812 AAAGCAAGGTTGGACCGAGC 61.173 55.000 2.36 2.36 44.90 5.03
106 107 0.875059 GAAAGCAAGGTTGGACCGAG 59.125 55.000 0.00 0.00 44.90 4.63
107 108 0.181587 TGAAAGCAAGGTTGGACCGA 59.818 50.000 0.00 0.00 44.90 4.69
108 109 0.310854 GTGAAAGCAAGGTTGGACCG 59.689 55.000 0.00 0.00 44.90 4.79
109 110 1.398692 TGTGAAAGCAAGGTTGGACC 58.601 50.000 0.00 0.00 38.99 4.46
110 111 3.733443 AATGTGAAAGCAAGGTTGGAC 57.267 42.857 0.00 0.00 0.00 4.02
111 112 4.462483 GGATAATGTGAAAGCAAGGTTGGA 59.538 41.667 0.00 0.00 0.00 3.53
112 113 4.220382 TGGATAATGTGAAAGCAAGGTTGG 59.780 41.667 0.00 0.00 0.00 3.77
113 114 5.047802 AGTGGATAATGTGAAAGCAAGGTTG 60.048 40.000 0.00 0.00 0.00 3.77
114 115 5.079643 AGTGGATAATGTGAAAGCAAGGTT 58.920 37.500 0.00 0.00 0.00 3.50
115 116 4.666512 AGTGGATAATGTGAAAGCAAGGT 58.333 39.130 0.00 0.00 0.00 3.50
116 117 4.096984 GGAGTGGATAATGTGAAAGCAAGG 59.903 45.833 0.00 0.00 0.00 3.61
117 118 4.701651 TGGAGTGGATAATGTGAAAGCAAG 59.298 41.667 0.00 0.00 0.00 4.01
118 119 4.661222 TGGAGTGGATAATGTGAAAGCAA 58.339 39.130 0.00 0.00 0.00 3.91
119 120 4.019411 TCTGGAGTGGATAATGTGAAAGCA 60.019 41.667 0.00 0.00 0.00 3.91
120 121 4.333926 GTCTGGAGTGGATAATGTGAAAGC 59.666 45.833 0.00 0.00 0.00 3.51
121 122 4.878397 GGTCTGGAGTGGATAATGTGAAAG 59.122 45.833 0.00 0.00 0.00 2.62
122 123 4.622933 CGGTCTGGAGTGGATAATGTGAAA 60.623 45.833 0.00 0.00 0.00 2.69
123 124 3.118775 CGGTCTGGAGTGGATAATGTGAA 60.119 47.826 0.00 0.00 0.00 3.18
124 125 2.430694 CGGTCTGGAGTGGATAATGTGA 59.569 50.000 0.00 0.00 0.00 3.58
125 126 2.430694 TCGGTCTGGAGTGGATAATGTG 59.569 50.000 0.00 0.00 0.00 3.21
126 127 2.431057 GTCGGTCTGGAGTGGATAATGT 59.569 50.000 0.00 0.00 0.00 2.71
127 128 2.695666 AGTCGGTCTGGAGTGGATAATG 59.304 50.000 0.00 0.00 0.00 1.90
128 129 3.033659 AGTCGGTCTGGAGTGGATAAT 57.966 47.619 0.00 0.00 0.00 1.28
129 130 2.526888 AGTCGGTCTGGAGTGGATAA 57.473 50.000 0.00 0.00 0.00 1.75
130 131 3.117625 ACATAGTCGGTCTGGAGTGGATA 60.118 47.826 0.00 0.00 0.00 2.59
131 132 2.311463 CATAGTCGGTCTGGAGTGGAT 58.689 52.381 0.00 0.00 0.00 3.41
132 133 1.005569 ACATAGTCGGTCTGGAGTGGA 59.994 52.381 0.00 0.00 0.00 4.02
133 134 1.135139 CACATAGTCGGTCTGGAGTGG 59.865 57.143 0.00 0.00 0.00 4.00
134 135 2.092323 TCACATAGTCGGTCTGGAGTG 58.908 52.381 0.00 0.00 0.00 3.51
135 136 2.492484 GTTCACATAGTCGGTCTGGAGT 59.508 50.000 0.00 0.00 0.00 3.85
136 137 2.755655 AGTTCACATAGTCGGTCTGGAG 59.244 50.000 0.00 0.00 0.00 3.86
137 138 2.803956 AGTTCACATAGTCGGTCTGGA 58.196 47.619 0.00 0.00 0.00 3.86
138 139 3.695060 ACTAGTTCACATAGTCGGTCTGG 59.305 47.826 0.00 0.00 0.00 3.86
139 140 4.966965 ACTAGTTCACATAGTCGGTCTG 57.033 45.455 0.00 0.00 0.00 3.51
140 141 7.642082 AAATACTAGTTCACATAGTCGGTCT 57.358 36.000 0.00 0.00 35.20 3.85
141 142 8.400947 TGTAAATACTAGTTCACATAGTCGGTC 58.599 37.037 0.00 0.00 35.20 4.79
142 143 8.186821 GTGTAAATACTAGTTCACATAGTCGGT 58.813 37.037 0.00 0.00 35.20 4.69
143 144 7.646922 GGTGTAAATACTAGTTCACATAGTCGG 59.353 40.741 0.00 0.00 35.20 4.79
144 145 7.375280 CGGTGTAAATACTAGTTCACATAGTCG 59.625 40.741 0.00 1.53 35.20 4.18
147 148 8.922058 AACGGTGTAAATACTAGTTCACATAG 57.078 34.615 0.00 2.29 0.00 2.23
178 179 5.693555 GCCTACGGTATTTACATCTACAACC 59.306 44.000 0.00 0.00 0.00 3.77
314 315 2.844122 ACTCGTTTTTCAGGTGCAAC 57.156 45.000 0.00 0.00 0.00 4.17
320 321 4.359706 CCAAAAGGAACTCGTTTTTCAGG 58.640 43.478 7.26 3.70 40.58 3.86
343 344 9.630098 AGCTGATTACAACAGAAATTTACAATG 57.370 29.630 0.00 0.00 37.54 2.82
399 1692 6.655425 TCTCTCTCAACGAATGTTTCTCTCTA 59.345 38.462 0.00 0.00 35.72 2.43
512 2001 4.195416 TGTTTGTGAATTCCAAAAAGGGC 58.805 39.130 17.97 9.90 32.89 5.19
515 2004 9.493206 CAAGAAATGTTTGTGAATTCCAAAAAG 57.507 29.630 17.97 3.41 32.89 2.27
548 2037 7.386573 ACCGTTTATGAATTCCAAAATTGTTCC 59.613 33.333 2.27 0.00 35.21 3.62
649 2138 8.542132 CCAACATTGTTTGTGAACTCTAAATTG 58.458 33.333 0.00 0.00 38.99 2.32
652 2141 7.397892 TCCAACATTGTTTGTGAACTCTAAA 57.602 32.000 0.00 0.00 38.99 1.85
667 2158 7.227116 ACATTTCTTTGGTGAATTCCAACATTG 59.773 33.333 2.27 0.00 45.60 2.82
774 2351 5.125417 TCAAGCCCAAGAGAAAAATATTCCG 59.875 40.000 0.00 0.00 0.00 4.30
779 2356 4.771577 TGCATCAAGCCCAAGAGAAAAATA 59.228 37.500 0.00 0.00 44.83 1.40
826 2403 1.361271 CAAGCCCAACAGCTGTGTG 59.639 57.895 22.49 19.09 44.11 3.82
827 2404 0.684153 AACAAGCCCAACAGCTGTGT 60.684 50.000 22.49 9.22 44.11 3.72
828 2405 0.461135 AAACAAGCCCAACAGCTGTG 59.539 50.000 22.49 14.24 44.11 3.66
829 2406 1.136891 GAAAACAAGCCCAACAGCTGT 59.863 47.619 15.25 15.25 44.11 4.40
830 2407 1.410153 AGAAAACAAGCCCAACAGCTG 59.590 47.619 13.48 13.48 44.11 4.24
859 2456 3.122780 GCACCGGCAACATTTTTATGTTC 59.877 43.478 0.00 0.00 42.32 3.18
956 2582 0.524392 CGGCTCTAGAGTCAACGCAG 60.524 60.000 23.57 5.25 31.14 5.18
968 2594 0.323178 AGAGGAAACCGACGGCTCTA 60.323 55.000 15.39 0.00 0.00 2.43
1323 2949 2.632763 AGTAGAAGGGGACAAGAGCT 57.367 50.000 0.00 0.00 0.00 4.09
1331 2957 3.563223 CAACGGAGATAGTAGAAGGGGA 58.437 50.000 0.00 0.00 0.00 4.81
1340 2967 6.890268 TGTATCCATATAGCAACGGAGATAGT 59.110 38.462 0.00 0.00 0.00 2.12
1389 3020 9.050601 CAACTTGATCATAGATTAGGAACCTTC 57.949 37.037 0.00 0.00 0.00 3.46
1405 3036 8.998377 TCAATTAGACGAATTTCAACTTGATCA 58.002 29.630 0.00 0.00 35.45 2.92
1428 3059 6.530887 CACACATCAAACAACAATGAAGTCAA 59.469 34.615 0.00 0.00 0.00 3.18
1437 3068 4.172505 GCACTTCACACATCAAACAACAA 58.827 39.130 0.00 0.00 0.00 2.83
1459 3092 6.524586 GCGAAATAAGTGATGAAGAAAAGTGG 59.475 38.462 0.00 0.00 0.00 4.00
1506 3139 9.127277 GGGTAAGCAATATTGTTACATAGGAAA 57.873 33.333 25.38 3.53 31.93 3.13
1507 3140 8.275758 TGGGTAAGCAATATTGTTACATAGGAA 58.724 33.333 25.38 12.33 31.93 3.36
1509 3142 8.458573 TTGGGTAAGCAATATTGTTACATAGG 57.541 34.615 25.38 2.76 31.93 2.57
1510 3143 9.337396 TCTTGGGTAAGCAATATTGTTACATAG 57.663 33.333 25.38 20.77 33.82 2.23
1518 3165 6.823689 ACACTACTCTTGGGTAAGCAATATTG 59.176 38.462 11.27 11.27 33.82 1.90
1528 3175 5.482526 TCAGCAAATACACTACTCTTGGGTA 59.517 40.000 0.00 0.00 0.00 3.69
1567 3356 9.410556 CACTAATTACTTCTTGGGTCAAAATTG 57.589 33.333 0.00 0.00 0.00 2.32
1568 3357 9.143155 ACACTAATTACTTCTTGGGTCAAAATT 57.857 29.630 0.00 0.00 0.00 1.82
1581 3370 6.494893 TGACATGCCAACACTAATTACTTC 57.505 37.500 0.00 0.00 0.00 3.01
1591 3380 0.968405 AACCCATGACATGCCAACAC 59.032 50.000 10.10 0.00 0.00 3.32
1593 3382 1.617850 TGAAACCCATGACATGCCAAC 59.382 47.619 10.10 1.29 0.00 3.77
1597 3386 5.008019 CACTACTATGAAACCCATGACATGC 59.992 44.000 10.10 0.00 36.71 4.06
1656 3451 4.785975 GCAACAACAACATCACAAATTGCC 60.786 41.667 0.00 0.00 35.11 4.52
1682 3477 7.878547 AGACTAGTCTTAATGGGTAGTACAC 57.121 40.000 20.00 0.00 36.31 2.90
1700 3495 4.339814 GGTGTGGGTGAGAGATAAGACTAG 59.660 50.000 0.00 0.00 0.00 2.57
1701 3496 4.264217 TGGTGTGGGTGAGAGATAAGACTA 60.264 45.833 0.00 0.00 0.00 2.59
1704 3499 2.832129 GTGGTGTGGGTGAGAGATAAGA 59.168 50.000 0.00 0.00 0.00 2.10
1715 3510 3.120086 GCACTCAGGTGGTGTGGGT 62.120 63.158 0.00 0.00 43.18 4.51
1732 3527 3.592898 AATTTTGAATGGAAGTCGGGC 57.407 42.857 0.00 0.00 30.38 6.13
1734 3529 5.537188 TCCAAAATTTTGAATGGAAGTCGG 58.463 37.500 28.44 10.17 38.95 4.79
1735 3530 7.656707 AATCCAAAATTTTGAATGGAAGTCG 57.343 32.000 28.44 10.46 44.58 4.18
1749 3544 6.322931 ACTAGGAAGACCCAAATCCAAAATT 58.677 36.000 0.00 0.00 37.41 1.82
1750 3545 5.903923 ACTAGGAAGACCCAAATCCAAAAT 58.096 37.500 0.00 0.00 37.41 1.82
1800 3595 4.998671 TTTCATGAAACCAAGCAAGTGA 57.001 36.364 16.91 0.00 0.00 3.41
1819 3614 7.520798 TCATCTATATCTGCAACCATCCTTTT 58.479 34.615 0.00 0.00 0.00 2.27
1825 3620 7.071069 TCAACTCATCTATATCTGCAACCAT 57.929 36.000 0.00 0.00 0.00 3.55
1826 3621 6.098838 ACTCAACTCATCTATATCTGCAACCA 59.901 38.462 0.00 0.00 0.00 3.67
1844 3639 6.801575 TCGGCATTTTTCTAAAAACTCAACT 58.198 32.000 2.88 0.00 40.33 3.16
1848 3643 7.509797 CCAAATCGGCATTTTTCTAAAAACTC 58.490 34.615 2.88 0.00 40.33 3.01
1883 3678 5.321102 ACACTTGTATTGGCAAATGACCTA 58.679 37.500 3.01 0.00 31.08 3.08
1921 3716 9.797556 CAGTGTATAAATAGTTAGTACAGCACA 57.202 33.333 0.00 0.00 0.00 4.57
1922 3717 9.245962 CCAGTGTATAAATAGTTAGTACAGCAC 57.754 37.037 0.00 0.00 0.00 4.40
1923 3718 9.192642 TCCAGTGTATAAATAGTTAGTACAGCA 57.807 33.333 0.00 0.00 0.00 4.41
2033 4109 3.036075 TGAAGTGATGAGCAGACACTG 57.964 47.619 11.69 0.00 42.81 3.66
2065 4141 6.247903 ACAACGATAAATGAAACTATGTGCG 58.752 36.000 0.00 0.00 0.00 5.34
2074 4150 8.322906 AGACATCAAGACAACGATAAATGAAA 57.677 30.769 0.00 0.00 0.00 2.69
2185 4264 5.132648 TCCATATTTCAGGATGGCAGTAAGT 59.867 40.000 0.00 0.00 42.13 2.24
2220 4299 9.208022 CCGCTCTCTGAATCAAACATATTAATA 57.792 33.333 0.00 0.00 0.00 0.98
2235 4314 6.405278 TGATCATATAAACCGCTCTCTGAA 57.595 37.500 0.00 0.00 0.00 3.02
2253 4332 6.377996 CACCCTTCCAACAGAAATAATGATCA 59.622 38.462 0.00 0.00 32.88 2.92
2254 4333 6.378280 ACACCCTTCCAACAGAAATAATGATC 59.622 38.462 0.00 0.00 32.88 2.92
2262 4341 3.662759 AGAACACCCTTCCAACAGAAA 57.337 42.857 0.00 0.00 32.88 2.52
2265 4344 1.873591 CGAAGAACACCCTTCCAACAG 59.126 52.381 0.00 0.00 39.39 3.16
2271 4350 2.545537 AAGGACGAAGAACACCCTTC 57.454 50.000 0.00 0.00 39.23 3.46
2277 4356 9.158233 CCATAAACTAATAAAGGACGAAGAACA 57.842 33.333 0.00 0.00 0.00 3.18
2287 4366 9.067986 GGATGTCCTTCCATAAACTAATAAAGG 57.932 37.037 0.00 0.00 35.72 3.11
2369 4449 7.391148 AATGTCCATGACAACTAAATGGTAC 57.609 36.000 0.46 0.00 45.96 3.34
2394 4474 2.622942 CAGCTTGGTACCTTGCTTTTCA 59.377 45.455 23.21 0.00 33.03 2.69
2400 4480 1.474077 CATTCCAGCTTGGTACCTTGC 59.526 52.381 14.36 16.48 39.03 4.01
2600 4682 2.303175 ACTGCATGTAAACGGGTTGTT 58.697 42.857 0.00 0.00 44.59 2.83
2603 4685 2.577700 TGAACTGCATGTAAACGGGTT 58.422 42.857 0.00 0.00 0.00 4.11
2740 4850 3.919216 TGGCAAACAATTAAATCCCACG 58.081 40.909 0.00 0.00 0.00 4.94
2749 4859 6.422333 TCAGACATATCCTGGCAAACAATTA 58.578 36.000 0.00 0.00 34.10 1.40
2759 4869 6.316390 GGTAACAAAGTTCAGACATATCCTGG 59.684 42.308 0.00 0.00 32.73 4.45
2809 4941 6.012508 TCCTGACAACCTCTTCCTGAATAAAT 60.013 38.462 0.00 0.00 0.00 1.40
2894 5026 2.069273 AGCCTTCTCGTTGTTGAATCG 58.931 47.619 0.00 0.00 0.00 3.34
2899 5031 1.871080 ACTCAGCCTTCTCGTTGTTG 58.129 50.000 0.00 0.00 0.00 3.33
2946 5079 0.529378 ACAGGTCGATGTACGGAACC 59.471 55.000 0.00 0.00 42.82 3.62
3051 5189 4.853007 TGGTAGACTAGTAGTGTCTTCCC 58.147 47.826 7.76 3.38 45.44 3.97
3101 5239 9.842775 AGCAGATAACTCTGATTAATTGATCAA 57.157 29.630 11.26 11.26 45.66 2.57
3161 5302 2.717639 AATTCAGGACGGAATGGGAG 57.282 50.000 0.00 0.00 37.55 4.30
3198 5339 0.729140 CAAGATCAAAACGTGCGCCC 60.729 55.000 4.18 0.00 0.00 6.13
3202 5343 3.297979 CGCATAACAAGATCAAAACGTGC 59.702 43.478 0.00 0.00 0.00 5.34
3203 5344 3.297979 GCGCATAACAAGATCAAAACGTG 59.702 43.478 0.30 0.00 0.00 4.49
3205 5346 3.539563 CAGCGCATAACAAGATCAAAACG 59.460 43.478 11.47 0.00 0.00 3.60
3304 5452 0.809241 CGATCCTGTCCTTGAGCTGC 60.809 60.000 0.00 0.00 0.00 5.25
3319 5467 3.757726 GATTCGAGCGCCGCGATC 61.758 66.667 20.71 20.71 38.98 3.69
3349 5497 2.364317 TGCTCCTCCTCCTTCGGG 60.364 66.667 0.00 0.00 0.00 5.14
3352 5500 1.048160 CCTCCTGCTCCTCCTCCTTC 61.048 65.000 0.00 0.00 0.00 3.46
3360 5508 2.695597 CCTCCTCCTCCTGCTCCT 59.304 66.667 0.00 0.00 0.00 3.69
3361 5509 2.445654 CCCTCCTCCTCCTGCTCC 60.446 72.222 0.00 0.00 0.00 4.70
3362 5510 3.160748 GCCCTCCTCCTCCTGCTC 61.161 72.222 0.00 0.00 0.00 4.26
3363 5511 4.814041 GGCCCTCCTCCTCCTGCT 62.814 72.222 0.00 0.00 0.00 4.24
3365 5513 3.086600 GTGGCCCTCCTCCTCCTG 61.087 72.222 0.00 0.00 0.00 3.86
3385 5545 2.574399 GGCTCTGTCCTGTCGGTC 59.426 66.667 0.00 0.00 0.00 4.79
3403 5563 1.066587 GTCGCTCCCTTCCTCGATG 59.933 63.158 0.00 0.00 33.37 3.84
3424 5584 1.568025 GTCGTTCACGCTTTGGTCC 59.432 57.895 0.00 0.00 39.60 4.46
3532 5692 1.153745 CTTCCTCGTCCTCTTGCGG 60.154 63.158 0.00 0.00 0.00 5.69
3561 5721 5.772169 AGAAATGAAACTAGCTGCTTCCTTT 59.228 36.000 7.79 4.80 0.00 3.11
3562 5722 5.320277 AGAAATGAAACTAGCTGCTTCCTT 58.680 37.500 7.79 0.00 0.00 3.36
3564 5724 5.635417 AAGAAATGAAACTAGCTGCTTCC 57.365 39.130 7.79 0.00 0.00 3.46
3571 5731 6.147985 ACTCGAGGAAAAGAAATGAAACTAGC 59.852 38.462 18.41 0.00 0.00 3.42
3572 5732 7.171678 ACACTCGAGGAAAAGAAATGAAACTAG 59.828 37.037 18.41 0.00 0.00 2.57
3573 5733 6.990349 ACACTCGAGGAAAAGAAATGAAACTA 59.010 34.615 18.41 0.00 0.00 2.24
3579 5781 5.931441 AAGACACTCGAGGAAAAGAAATG 57.069 39.130 18.41 4.85 0.00 2.32
3585 5787 3.120792 CGACAAAGACACTCGAGGAAAA 58.879 45.455 18.41 0.00 0.00 2.29
3600 5802 4.055360 ACACGTGAAGATCATTCGACAAA 58.945 39.130 25.01 0.00 0.00 2.83
3602 5804 3.297830 ACACGTGAAGATCATTCGACA 57.702 42.857 25.01 0.00 0.00 4.35
3606 5808 4.379793 GCACAAAACACGTGAAGATCATTC 59.620 41.667 25.01 0.00 36.43 2.67
3647 5873 6.071616 ACCACACATAATTAAAATTCGGTGCT 60.072 34.615 14.41 5.04 36.67 4.40
3650 5876 6.209788 ACCACCACACATAATTAAAATTCGGT 59.790 34.615 0.00 0.00 0.00 4.69
3659 5885 4.447290 CATCGGACCACCACACATAATTA 58.553 43.478 0.00 0.00 35.59 1.40
3661 5887 2.421388 CCATCGGACCACCACACATAAT 60.421 50.000 0.00 0.00 35.59 1.28
3663 5889 0.539518 CCATCGGACCACCACACATA 59.460 55.000 0.00 0.00 35.59 2.29
3664 5890 1.299648 CCATCGGACCACCACACAT 59.700 57.895 0.00 0.00 35.59 3.21
3666 5892 2.746277 GCCATCGGACCACCACAC 60.746 66.667 0.00 0.00 35.59 3.82
3667 5893 4.386951 CGCCATCGGACCACCACA 62.387 66.667 0.00 0.00 35.59 4.17
3690 5925 6.206048 AGTGGCACTAAAACAACTATACAACC 59.794 38.462 20.61 0.00 0.00 3.77
3736 5971 4.202080 ACACATGTGGATAAATGCATCTGC 60.202 41.667 28.64 0.00 36.84 4.26
3748 5983 1.000385 CGTGCCAAAACACATGTGGAT 60.000 47.619 28.64 15.01 40.73 3.41
3770 6005 9.396022 CAGGAATGAAAATGGTAGTGTATTAGT 57.604 33.333 0.00 0.00 0.00 2.24
3771 6006 9.613428 TCAGGAATGAAAATGGTAGTGTATTAG 57.387 33.333 0.00 0.00 0.00 1.73
3772 6007 9.613428 CTCAGGAATGAAAATGGTAGTGTATTA 57.387 33.333 0.00 0.00 0.00 0.98
3773 6008 7.557719 CCTCAGGAATGAAAATGGTAGTGTATT 59.442 37.037 0.00 0.00 0.00 1.89
3777 6012 4.096984 GCCTCAGGAATGAAAATGGTAGTG 59.903 45.833 0.00 0.00 0.00 2.74
3800 6038 1.677576 TGTCTTCAGGCAAAAGCACAG 59.322 47.619 0.00 0.00 0.00 3.66
3820 6058 1.810412 GCCTTGACTTTCCACACGTCT 60.810 52.381 0.00 0.00 0.00 4.18
3821 6059 0.586802 GCCTTGACTTTCCACACGTC 59.413 55.000 0.00 0.00 0.00 4.34
3822 6060 0.107410 TGCCTTGACTTTCCACACGT 60.107 50.000 0.00 0.00 0.00 4.49
3823 6061 1.002468 CTTGCCTTGACTTTCCACACG 60.002 52.381 0.00 0.00 0.00 4.49
3824 6062 1.269257 GCTTGCCTTGACTTTCCACAC 60.269 52.381 0.00 0.00 0.00 3.82
3825 6063 1.032014 GCTTGCCTTGACTTTCCACA 58.968 50.000 0.00 0.00 0.00 4.17
3838 6076 1.180029 ATGAGGAACACATGCTTGCC 58.820 50.000 0.00 0.00 38.43 4.52
3907 6146 4.436998 AGACGGGCCGAAAGCGAG 62.437 66.667 35.78 0.00 45.17 5.03
3908 6147 4.430765 GAGACGGGCCGAAAGCGA 62.431 66.667 35.78 0.00 45.17 4.93
3909 6148 3.934391 AAGAGACGGGCCGAAAGCG 62.934 63.158 35.78 4.70 45.17 4.68
3910 6149 1.636570 GAAAGAGACGGGCCGAAAGC 61.637 60.000 35.78 18.06 42.60 3.51
3911 6150 0.320421 TGAAAGAGACGGGCCGAAAG 60.320 55.000 35.78 3.12 0.00 2.62
3912 6151 0.601841 GTGAAAGAGACGGGCCGAAA 60.602 55.000 35.78 5.23 0.00 3.46
3925 6164 6.212955 TCCTTTAATTTTCCAAGCGTGAAAG 58.787 36.000 0.00 1.26 33.58 2.62
3954 6193 2.031919 TGTTCACCGCCTCGCATT 59.968 55.556 0.00 0.00 0.00 3.56
3956 6195 3.858868 GACTGTTCACCGCCTCGCA 62.859 63.158 0.00 0.00 0.00 5.10
3957 6196 3.112709 GACTGTTCACCGCCTCGC 61.113 66.667 0.00 0.00 0.00 5.03
3965 6204 2.668280 GCGGCCGAAGACTGTTCAC 61.668 63.158 33.48 1.41 0.00 3.18
3966 6205 2.357034 GCGGCCGAAGACTGTTCA 60.357 61.111 33.48 0.00 0.00 3.18
3977 6216 4.302172 ACGAAAAACACGCGGCCG 62.302 61.111 24.05 24.05 41.14 6.13
3999 6238 1.348008 TTGCCATGCCCACCCAAAAA 61.348 50.000 0.00 0.00 0.00 1.94
4000 6239 1.132554 ATTGCCATGCCCACCCAAAA 61.133 50.000 0.00 0.00 0.00 2.44
4001 6240 1.538382 ATTGCCATGCCCACCCAAA 60.538 52.632 0.00 0.00 0.00 3.28
4002 6241 1.988956 GATTGCCATGCCCACCCAA 60.989 57.895 0.00 0.00 0.00 4.12
4055 6301 1.920325 TCTGAACTCTGGGCAGGGG 60.920 63.158 0.00 0.00 31.73 4.79
4191 6460 2.894387 GTCTGCTCCGCCATGCTC 60.894 66.667 0.00 0.00 0.00 4.26
4209 6478 1.677637 ATTCCTTCCTCCGCTCCGTC 61.678 60.000 0.00 0.00 0.00 4.79
4219 6489 2.107204 CCGATCCATTCCATTCCTTCCT 59.893 50.000 0.00 0.00 0.00 3.36
4295 6585 6.499106 AAAAATCACCTGAAGAAAACCCAT 57.501 33.333 0.00 0.00 0.00 4.00
4342 6636 1.737363 GCGCAAACCAACCAAGAAACA 60.737 47.619 0.30 0.00 0.00 2.83
4391 6685 1.153229 GAAAGAATCCCCGGTCCCG 60.153 63.158 0.00 0.00 39.44 5.14
4439 6733 1.380524 TGACGGATCGAGAAGGAGAC 58.619 55.000 0.00 0.00 0.00 3.36
4440 6734 1.743958 GTTGACGGATCGAGAAGGAGA 59.256 52.381 0.00 0.00 0.00 3.71
4441 6735 1.746220 AGTTGACGGATCGAGAAGGAG 59.254 52.381 0.00 0.00 0.00 3.69
4459 6753 1.425066 TGATCCAACTTCCAAGCCAGT 59.575 47.619 0.00 0.00 0.00 4.00
4465 6759 8.267620 AGTATATCATCTGATCCAACTTCCAA 57.732 34.615 0.00 0.00 36.05 3.53
4466 6760 7.309438 CGAGTATATCATCTGATCCAACTTCCA 60.309 40.741 0.00 0.00 36.05 3.53
4467 6761 7.032580 CGAGTATATCATCTGATCCAACTTCC 58.967 42.308 0.00 0.00 36.05 3.46
4468 6762 7.032580 CCGAGTATATCATCTGATCCAACTTC 58.967 42.308 0.00 0.00 36.05 3.01
4469 6763 6.495181 ACCGAGTATATCATCTGATCCAACTT 59.505 38.462 0.00 0.00 36.05 2.66
4470 6764 6.013379 ACCGAGTATATCATCTGATCCAACT 58.987 40.000 0.00 0.00 36.05 3.16
4471 6765 6.071896 TCACCGAGTATATCATCTGATCCAAC 60.072 42.308 0.00 0.00 36.05 3.77
4508 6802 4.250464 AGGAGCGATGTGATAACGAAAAA 58.750 39.130 0.00 0.00 0.00 1.94
4509 6803 3.857052 AGGAGCGATGTGATAACGAAAA 58.143 40.909 0.00 0.00 0.00 2.29
4510 6804 3.119280 TGAGGAGCGATGTGATAACGAAA 60.119 43.478 0.00 0.00 0.00 3.46
4511 6805 2.425668 TGAGGAGCGATGTGATAACGAA 59.574 45.455 0.00 0.00 0.00 3.85
4512 6806 2.021457 TGAGGAGCGATGTGATAACGA 58.979 47.619 0.00 0.00 0.00 3.85
4513 6807 2.492019 TGAGGAGCGATGTGATAACG 57.508 50.000 0.00 0.00 0.00 3.18
4514 6808 3.722147 ACATGAGGAGCGATGTGATAAC 58.278 45.455 0.00 0.00 31.47 1.89
4515 6809 4.406648 AACATGAGGAGCGATGTGATAA 57.593 40.909 0.00 0.00 33.03 1.75
4516 6810 4.100035 AGAAACATGAGGAGCGATGTGATA 59.900 41.667 0.00 0.00 33.03 2.15
4517 6811 2.996249 AACATGAGGAGCGATGTGAT 57.004 45.000 0.00 0.00 33.03 3.06
4518 6812 2.234661 AGAAACATGAGGAGCGATGTGA 59.765 45.455 0.00 0.00 33.03 3.58
4519 6813 2.606725 GAGAAACATGAGGAGCGATGTG 59.393 50.000 0.00 0.00 33.03 3.21
4520 6814 2.499289 AGAGAAACATGAGGAGCGATGT 59.501 45.455 0.00 0.00 34.16 3.06
4521 6815 3.176552 AGAGAAACATGAGGAGCGATG 57.823 47.619 0.00 0.00 0.00 3.84
4522 6816 3.450457 AGAAGAGAAACATGAGGAGCGAT 59.550 43.478 0.00 0.00 0.00 4.58
4523 6817 2.828520 AGAAGAGAAACATGAGGAGCGA 59.171 45.455 0.00 0.00 0.00 4.93
4524 6818 3.244033 AGAAGAGAAACATGAGGAGCG 57.756 47.619 0.00 0.00 0.00 5.03
4525 6819 4.831107 AGAAGAAGAGAAACATGAGGAGC 58.169 43.478 0.00 0.00 0.00 4.70
4526 6820 5.874261 GGAAGAAGAAGAGAAACATGAGGAG 59.126 44.000 0.00 0.00 0.00 3.69
4527 6821 5.545723 AGGAAGAAGAAGAGAAACATGAGGA 59.454 40.000 0.00 0.00 0.00 3.71
4528 6822 5.803552 AGGAAGAAGAAGAGAAACATGAGG 58.196 41.667 0.00 0.00 0.00 3.86
4529 6823 7.131498 CAAGGAAGAAGAAGAGAAACATGAG 57.869 40.000 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.