Multiple sequence alignment - TraesCS5B01G384100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G384100 chr5B 100.000 3747 0 0 1 3747 562968266 562964520 0.000000e+00 6920.0
1 TraesCS5B01G384100 chr5B 100.000 164 0 0 4168 4331 562964099 562963936 1.960000e-78 303.0
2 TraesCS5B01G384100 chr5B 95.833 168 6 1 1770 1937 662860313 662860479 1.980000e-68 270.0
3 TraesCS5B01G384100 chr5A 89.922 1786 92 31 1934 3668 577948000 577946252 0.000000e+00 2220.0
4 TraesCS5B01G384100 chr5A 82.862 1628 123 59 206 1775 577949529 577948000 0.000000e+00 1317.0
5 TraesCS5B01G384100 chr5A 92.571 175 10 2 1764 1936 456897910 456897737 9.300000e-62 248.0
6 TraesCS5B01G384100 chr5D 88.425 1797 103 50 1934 3668 458914656 458912903 0.000000e+00 2069.0
7 TraesCS5B01G384100 chr5D 83.937 1849 121 61 1 1774 458916408 458914661 0.000000e+00 1607.0
8 TraesCS5B01G384100 chr5D 95.122 164 8 0 4168 4331 468358057 468358220 4.300000e-65 259.0
9 TraesCS5B01G384100 chr3B 98.693 153 2 0 4179 4331 116976843 116976691 5.520000e-69 272.0
10 TraesCS5B01G384100 chr3B 97.778 45 1 0 3703 3747 116977582 116977538 1.290000e-10 78.7
11 TraesCS5B01G384100 chr2B 95.732 164 7 0 1773 1936 108997539 108997702 9.240000e-67 265.0
12 TraesCS5B01G384100 chr2B 95.122 164 8 0 4168 4331 142539017 142539180 4.300000e-65 259.0
13 TraesCS5B01G384100 chr2B 92.090 177 12 1 1768 1942 39936181 39936005 9.300000e-62 248.0
14 TraesCS5B01G384100 chr2B 97.778 45 1 0 3703 3747 142538116 142538160 1.290000e-10 78.7
15 TraesCS5B01G384100 chr2D 95.122 164 8 0 4168 4331 60773831 60773994 4.300000e-65 259.0
16 TraesCS5B01G384100 chr2D 100.000 47 0 0 309 355 565811110 565811064 2.150000e-13 87.9
17 TraesCS5B01G384100 chr2D 97.778 45 1 0 3703 3747 60773296 60773340 1.290000e-10 78.7
18 TraesCS5B01G384100 chr2D 97.778 45 1 0 3703 3747 136472142 136472098 1.290000e-10 78.7
19 TraesCS5B01G384100 chr2D 97.778 45 1 0 3703 3747 635080476 635080432 1.290000e-10 78.7
20 TraesCS5B01G384100 chr2D 95.556 45 2 0 3703 3747 618912086 618912042 6.010000e-09 73.1
21 TraesCS5B01G384100 chr7D 94.611 167 8 1 1771 1936 376090488 376090654 1.550000e-64 257.0
22 TraesCS5B01G384100 chr7D 95.918 147 6 0 4185 4331 87994301 87994447 5.600000e-59 239.0
23 TraesCS5B01G384100 chr7B 94.611 167 6 2 1770 1936 304959201 304959364 5.560000e-64 255.0
24 TraesCS5B01G384100 chr4D 92.614 176 11 1 1769 1942 93338038 93338213 7.190000e-63 252.0
25 TraesCS5B01G384100 chr4D 92.655 177 10 2 1773 1947 441902968 441903143 7.190000e-63 252.0
26 TraesCS5B01G384100 chr6D 92.571 175 10 2 1764 1936 392896967 392897140 9.300000e-62 248.0
27 TraesCS5B01G384100 chr6D 97.778 45 1 0 3703 3747 350276759 350276803 1.290000e-10 78.7
28 TraesCS5B01G384100 chr6B 95.425 153 7 0 4179 4331 172577391 172577543 1.200000e-60 244.0
29 TraesCS5B01G384100 chr2A 93.293 164 11 0 4168 4331 41597443 41597606 4.330000e-60 243.0
30 TraesCS5B01G384100 chr1D 95.833 144 6 0 4188 4331 99832654 99832511 2.600000e-57 233.0
31 TraesCS5B01G384100 chr1D 95.775 142 6 0 4190 4331 17626209 17626350 3.370000e-56 230.0
32 TraesCS5B01G384100 chr1D 97.778 45 1 0 3703 3747 17625492 17625536 1.290000e-10 78.7
33 TraesCS5B01G384100 chr1B 97.778 45 1 0 3703 3747 565994934 565994978 1.290000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G384100 chr5B 562963936 562968266 4330 True 3611.5 6920 100.000 1 4331 2 chr5B.!!$R1 4330
1 TraesCS5B01G384100 chr5A 577946252 577949529 3277 True 1768.5 2220 86.392 206 3668 2 chr5A.!!$R2 3462
2 TraesCS5B01G384100 chr5D 458912903 458916408 3505 True 1838.0 2069 86.181 1 3668 2 chr5D.!!$R1 3667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
716 775 0.037232 CCGAGGGAGAGTTGGTTGAC 60.037 60.0 0.00 0.0 0.0 3.18 F
993 1079 0.178891 TGCTCTTTCTCAGGGAGGGT 60.179 55.0 0.00 0.0 0.0 4.34 F
2840 3035 0.036577 GATGCTGATGATCGGGAGGG 60.037 60.0 3.07 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2030 2149 0.320771 TCGAAGACCTGCCAGAAAGC 60.321 55.0 0.0 0.0 0.00 3.51 R
2971 3166 0.602905 GTTGTAGCTGTTCCGCACCT 60.603 55.0 0.0 0.0 0.00 4.00 R
3683 3906 0.456628 GAAGTCTCTGGACCTACGGC 59.543 60.0 0.0 0.0 43.05 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 42 5.302059 CGGACTTGACCTTCTCCATCTATTA 59.698 44.000 0.00 0.00 0.00 0.98
41 43 6.015010 CGGACTTGACCTTCTCCATCTATTAT 60.015 42.308 0.00 0.00 0.00 1.28
43 45 9.041354 GGACTTGACCTTCTCCATCTATTATAT 57.959 37.037 0.00 0.00 0.00 0.86
44 46 9.868277 GACTTGACCTTCTCCATCTATTATATG 57.132 37.037 0.00 0.00 0.00 1.78
45 47 8.317679 ACTTGACCTTCTCCATCTATTATATGC 58.682 37.037 0.00 0.00 0.00 3.14
46 48 7.797121 TGACCTTCTCCATCTATTATATGCA 57.203 36.000 0.00 0.00 0.00 3.96
47 49 7.615403 TGACCTTCTCCATCTATTATATGCAC 58.385 38.462 0.00 0.00 0.00 4.57
48 50 7.235399 TGACCTTCTCCATCTATTATATGCACA 59.765 37.037 0.00 0.00 0.00 4.57
49 51 7.977818 ACCTTCTCCATCTATTATATGCACAA 58.022 34.615 0.00 0.00 0.00 3.33
50 52 7.880195 ACCTTCTCCATCTATTATATGCACAAC 59.120 37.037 0.00 0.00 0.00 3.32
51 53 7.879677 CCTTCTCCATCTATTATATGCACAACA 59.120 37.037 0.00 0.00 0.00 3.33
52 54 8.607441 TTCTCCATCTATTATATGCACAACAC 57.393 34.615 0.00 0.00 0.00 3.32
53 55 7.734942 TCTCCATCTATTATATGCACAACACA 58.265 34.615 0.00 0.00 0.00 3.72
54 56 8.377799 TCTCCATCTATTATATGCACAACACAT 58.622 33.333 0.00 0.00 0.00 3.21
55 57 9.657419 CTCCATCTATTATATGCACAACACATA 57.343 33.333 0.00 0.00 34.64 2.29
58 60 9.764870 CATCTATTATATGCACAACACATAAGC 57.235 33.333 0.00 0.00 33.89 3.09
76 78 6.593770 ACATAAGCATTGAGTAACAATCACGA 59.406 34.615 0.00 0.00 46.01 4.35
89 91 0.108377 ATCACGACATAAGCACGCCA 60.108 50.000 0.00 0.00 0.00 5.69
92 94 1.296056 ACGACATAAGCACGCCAACC 61.296 55.000 0.00 0.00 0.00 3.77
102 104 4.988598 CGCCAACCGTCTGCTGGT 62.989 66.667 0.00 0.00 42.98 4.00
103 105 3.050275 GCCAACCGTCTGCTGGTC 61.050 66.667 0.00 0.00 39.29 4.02
104 106 2.743718 CCAACCGTCTGCTGGTCT 59.256 61.111 0.00 0.00 39.29 3.85
144 146 5.214417 TCATCATCACAAAAGTCAAAAGCG 58.786 37.500 0.00 0.00 0.00 4.68
146 148 4.847633 TCATCACAAAAGTCAAAAGCGAG 58.152 39.130 0.00 0.00 0.00 5.03
147 149 3.691049 TCACAAAAGTCAAAAGCGAGG 57.309 42.857 0.00 0.00 0.00 4.63
153 156 6.695278 CACAAAAGTCAAAAGCGAGGAATAAA 59.305 34.615 0.00 0.00 0.00 1.40
171 174 0.038343 AAAAATGCCGCTCACGCATT 60.038 45.000 2.30 2.30 43.16 3.56
208 233 1.501582 ACTCAGCCCATAAGAGACCC 58.498 55.000 0.00 0.00 33.69 4.46
246 271 3.456280 TGGAACAAGAACAAAATGCAGC 58.544 40.909 0.00 0.00 31.92 5.25
247 272 3.132646 TGGAACAAGAACAAAATGCAGCT 59.867 39.130 0.00 0.00 31.92 4.24
248 273 3.492011 GGAACAAGAACAAAATGCAGCTG 59.508 43.478 10.11 10.11 0.00 4.24
285 312 5.541845 TGTACAGATATTGCTGGCTGTATC 58.458 41.667 0.00 8.57 43.33 2.24
286 313 4.013267 ACAGATATTGCTGGCTGTATCC 57.987 45.455 0.00 0.00 39.61 2.59
287 314 2.998670 CAGATATTGCTGGCTGTATCCG 59.001 50.000 11.24 0.00 32.26 4.18
288 315 2.899900 AGATATTGCTGGCTGTATCCGA 59.100 45.455 11.24 0.00 0.00 4.55
289 316 2.526304 TATTGCTGGCTGTATCCGAC 57.474 50.000 0.00 0.00 0.00 4.79
290 317 0.833287 ATTGCTGGCTGTATCCGACT 59.167 50.000 0.00 0.00 0.00 4.18
291 318 0.108186 TTGCTGGCTGTATCCGACTG 60.108 55.000 0.00 0.00 0.00 3.51
292 319 0.970427 TGCTGGCTGTATCCGACTGA 60.970 55.000 0.00 0.00 0.00 3.41
293 320 0.390860 GCTGGCTGTATCCGACTGAT 59.609 55.000 0.00 0.00 37.49 2.90
294 321 1.202580 GCTGGCTGTATCCGACTGATT 60.203 52.381 0.00 0.00 34.76 2.57
295 322 2.035961 GCTGGCTGTATCCGACTGATTA 59.964 50.000 0.00 0.00 34.76 1.75
296 323 3.492656 GCTGGCTGTATCCGACTGATTAA 60.493 47.826 0.00 0.00 34.76 1.40
297 324 4.800914 GCTGGCTGTATCCGACTGATTAAT 60.801 45.833 0.00 0.00 34.76 1.40
301 328 5.869888 GGCTGTATCCGACTGATTAATTAGG 59.130 44.000 11.54 1.73 34.76 2.69
358 402 1.584717 AATGCTTCCCCTCCCTTCCC 61.585 60.000 0.00 0.00 0.00 3.97
364 408 2.309504 CCCCTCCCTTCCCAGTTCC 61.310 68.421 0.00 0.00 0.00 3.62
365 409 1.229984 CCCTCCCTTCCCAGTTCCT 60.230 63.158 0.00 0.00 0.00 3.36
366 410 0.846870 CCCTCCCTTCCCAGTTCCTT 60.847 60.000 0.00 0.00 0.00 3.36
375 419 1.699634 TCCCAGTTCCTTCTTCCACAG 59.300 52.381 0.00 0.00 0.00 3.66
407 451 2.202349 GCTGCCGAAACACATCGC 60.202 61.111 0.00 0.00 41.40 4.58
437 481 3.214328 GAACCCAAGTCAGAGAAGCAAA 58.786 45.455 0.00 0.00 0.00 3.68
438 482 2.856222 ACCCAAGTCAGAGAAGCAAAG 58.144 47.619 0.00 0.00 0.00 2.77
439 483 1.538950 CCCAAGTCAGAGAAGCAAAGC 59.461 52.381 0.00 0.00 0.00 3.51
440 484 1.196354 CCAAGTCAGAGAAGCAAAGCG 59.804 52.381 0.00 0.00 0.00 4.68
442 486 0.952984 AGTCAGAGAAGCAAAGCGCC 60.953 55.000 2.29 0.00 44.04 6.53
443 487 0.952984 GTCAGAGAAGCAAAGCGCCT 60.953 55.000 2.29 0.00 44.04 5.52
444 488 0.608130 TCAGAGAAGCAAAGCGCCTA 59.392 50.000 2.29 0.00 44.04 3.93
445 489 1.005340 CAGAGAAGCAAAGCGCCTAG 58.995 55.000 2.29 0.00 44.04 3.02
472 519 2.124695 GGACGATCAACCAGCCCC 60.125 66.667 0.00 0.00 0.00 5.80
519 566 4.508128 CGCACACTCCGGCCGTAT 62.508 66.667 26.12 5.70 0.00 3.06
520 567 2.125269 GCACACTCCGGCCGTATT 60.125 61.111 26.12 0.00 0.00 1.89
521 568 1.142314 GCACACTCCGGCCGTATTA 59.858 57.895 26.12 5.43 0.00 0.98
522 569 0.249741 GCACACTCCGGCCGTATTAT 60.250 55.000 26.12 3.14 0.00 1.28
523 570 1.808891 GCACACTCCGGCCGTATTATT 60.809 52.381 26.12 0.00 0.00 1.40
524 571 2.546373 GCACACTCCGGCCGTATTATTA 60.546 50.000 26.12 0.00 0.00 0.98
525 572 3.863400 GCACACTCCGGCCGTATTATTAT 60.863 47.826 26.12 0.00 0.00 1.28
526 573 4.312443 CACACTCCGGCCGTATTATTATT 58.688 43.478 26.12 0.00 0.00 1.40
527 574 5.472148 CACACTCCGGCCGTATTATTATTA 58.528 41.667 26.12 0.00 0.00 0.98
528 575 6.103997 CACACTCCGGCCGTATTATTATTAT 58.896 40.000 26.12 0.00 0.00 1.28
565 612 2.033299 CCGATTGTTTAGCGATGCCAAT 59.967 45.455 0.00 0.00 0.00 3.16
567 614 3.483196 CGATTGTTTAGCGATGCCAATTG 59.517 43.478 0.00 0.00 0.00 2.32
603 650 1.324740 ACAGGCCGGCGTATTAGTGA 61.325 55.000 23.15 0.00 0.00 3.41
694 749 0.969894 CAGGTGACCCGAGACTTCTT 59.030 55.000 0.00 0.00 35.12 2.52
695 750 1.067495 CAGGTGACCCGAGACTTCTTC 60.067 57.143 0.00 0.00 35.12 2.87
696 751 1.203075 AGGTGACCCGAGACTTCTTCT 60.203 52.381 0.00 0.00 37.23 2.85
716 775 0.037232 CCGAGGGAGAGTTGGTTGAC 60.037 60.000 0.00 0.00 0.00 3.18
729 788 3.691342 TTGACGCAGACCTCCGGG 61.691 66.667 0.00 0.00 38.88 5.73
858 943 1.683943 CTTTCCCACATCGCCATCAT 58.316 50.000 0.00 0.00 0.00 2.45
923 1008 2.354259 CCTGTCTCTTCTCCATTGCAC 58.646 52.381 0.00 0.00 0.00 4.57
938 1024 0.664761 TGCACACTTCTTGAAGCAGC 59.335 50.000 9.98 11.31 35.72 5.25
941 1027 1.945394 CACACTTCTTGAAGCAGCTGT 59.055 47.619 16.64 0.00 0.00 4.40
942 1028 3.133691 CACACTTCTTGAAGCAGCTGTA 58.866 45.455 16.64 0.00 0.00 2.74
972 1058 1.818363 CGTCGTCATCGGAGGAGGA 60.818 63.158 10.59 10.59 43.05 3.71
973 1059 1.777030 CGTCGTCATCGGAGGAGGAG 61.777 65.000 14.43 6.41 43.05 3.69
985 1071 2.175202 GAGGAGGAGTGCTCTTTCTCA 58.825 52.381 11.79 0.00 40.09 3.27
986 1072 2.166254 GAGGAGGAGTGCTCTTTCTCAG 59.834 54.545 11.79 0.00 40.09 3.35
992 1078 0.251634 GTGCTCTTTCTCAGGGAGGG 59.748 60.000 0.00 0.00 0.00 4.30
993 1079 0.178891 TGCTCTTTCTCAGGGAGGGT 60.179 55.000 0.00 0.00 0.00 4.34
998 1084 2.111972 TCTTTCTCAGGGAGGGTACTGT 59.888 50.000 0.00 0.00 36.17 3.55
1109 1204 2.159382 CAACAGGCCTCGGTGTAATTT 58.841 47.619 0.00 0.00 0.00 1.82
1110 1205 2.109425 ACAGGCCTCGGTGTAATTTC 57.891 50.000 0.00 0.00 0.00 2.17
1154 1251 5.560966 TCTTTCTTGTTTTTCTCACGCTT 57.439 34.783 0.00 0.00 0.00 4.68
1156 1253 3.691049 TCTTGTTTTTCTCACGCTTGG 57.309 42.857 0.00 0.00 0.00 3.61
1168 1265 3.246619 TCACGCTTGGTTTGTTGTTTTC 58.753 40.909 0.00 0.00 0.00 2.29
1172 1269 4.752604 ACGCTTGGTTTGTTGTTTTCTTTT 59.247 33.333 0.00 0.00 0.00 2.27
1173 1270 5.078745 CGCTTGGTTTGTTGTTTTCTTTTG 58.921 37.500 0.00 0.00 0.00 2.44
1174 1271 5.389778 GCTTGGTTTGTTGTTTTCTTTTGG 58.610 37.500 0.00 0.00 0.00 3.28
1176 1273 5.228945 TGGTTTGTTGTTTTCTTTTGGGA 57.771 34.783 0.00 0.00 0.00 4.37
1179 1276 5.935206 GGTTTGTTGTTTTCTTTTGGGAGAA 59.065 36.000 0.00 0.00 34.00 2.87
1180 1277 6.092122 GGTTTGTTGTTTTCTTTTGGGAGAAG 59.908 38.462 0.00 0.00 37.01 2.85
1181 1278 5.337578 TGTTGTTTTCTTTTGGGAGAAGG 57.662 39.130 0.00 0.00 37.01 3.46
1184 1281 6.170506 GTTGTTTTCTTTTGGGAGAAGGTTT 58.829 36.000 0.00 0.00 37.01 3.27
1185 1282 5.729510 TGTTTTCTTTTGGGAGAAGGTTTG 58.270 37.500 0.00 0.00 37.01 2.93
1195 1292 4.584325 TGGGAGAAGGTTTGATTGTTCTTG 59.416 41.667 0.00 0.00 29.28 3.02
1220 1320 2.482142 GCCGTAGCTGCTTGATTCTACT 60.482 50.000 7.79 0.00 35.50 2.57
1267 1367 7.759489 TTCTTTTAGCCTGCTTTGAATCTTA 57.241 32.000 0.00 0.00 0.00 2.10
1292 1392 8.764524 AAACTGTTCTGTTAGATGATCTGTAC 57.235 34.615 4.96 4.06 0.00 2.90
1295 1395 7.336176 ACTGTTCTGTTAGATGATCTGTACGTA 59.664 37.037 4.96 0.00 0.00 3.57
1296 1396 8.047413 TGTTCTGTTAGATGATCTGTACGTAA 57.953 34.615 4.96 0.00 0.00 3.18
1297 1397 8.683615 TGTTCTGTTAGATGATCTGTACGTAAT 58.316 33.333 4.96 0.00 0.00 1.89
1298 1398 9.517609 GTTCTGTTAGATGATCTGTACGTAATT 57.482 33.333 4.96 0.00 0.00 1.40
1339 1439 4.639135 ACTCTGCAAACTGAAAAGAACC 57.361 40.909 0.00 0.00 0.00 3.62
1357 1460 5.565509 AGAACCTTCCTTTTCCTCAGAATC 58.434 41.667 0.00 0.00 0.00 2.52
1368 1471 5.768980 TTCCTCAGAATCAGGTGAATCTT 57.231 39.130 0.00 0.00 32.31 2.40
1392 1495 9.708092 CTTAACTACTAAAGCTACAAGAAACCT 57.292 33.333 0.00 0.00 0.00 3.50
1487 1596 6.967199 GGTGATCATTTTCGTGGTTAAGATTC 59.033 38.462 0.00 0.00 0.00 2.52
1489 1598 8.184192 GTGATCATTTTCGTGGTTAAGATTCAT 58.816 33.333 0.00 0.00 0.00 2.57
1585 1696 0.537188 AGCGTGCAAGCCTATACTGT 59.463 50.000 21.32 0.00 38.01 3.55
1621 1736 1.824852 GACCCCAATTGTTAGCCCAAG 59.175 52.381 4.43 0.00 0.00 3.61
1638 1753 3.087031 CCAAGCCTCATCATTTCACACT 58.913 45.455 0.00 0.00 0.00 3.55
1680 1795 6.526674 GTCTCGTGTTTCACAAATTCAAACTT 59.473 34.615 1.00 0.00 33.40 2.66
1688 1803 7.593875 TTCACAAATTCAAACTTTGGACAAG 57.406 32.000 1.62 0.00 37.80 3.16
1721 1838 3.181497 CCATTCTTGTATTCGTGGGCTTG 60.181 47.826 0.00 0.00 0.00 4.01
1763 1880 0.452784 CTTGCTACGCGGCTTCAAAC 60.453 55.000 12.47 0.00 0.00 2.93
1774 1891 4.451096 CGCGGCTTCAAACAAGGTATATAT 59.549 41.667 0.00 0.00 0.00 0.86
1775 1892 5.049680 CGCGGCTTCAAACAAGGTATATATT 60.050 40.000 0.00 0.00 0.00 1.28
1776 1893 6.371389 GCGGCTTCAAACAAGGTATATATTC 58.629 40.000 0.00 0.00 0.00 1.75
1777 1894 6.567891 GCGGCTTCAAACAAGGTATATATTCC 60.568 42.308 0.14 0.14 0.00 3.01
1778 1895 6.072673 CGGCTTCAAACAAGGTATATATTCCC 60.073 42.308 4.84 0.00 0.00 3.97
1779 1896 7.004691 GGCTTCAAACAAGGTATATATTCCCT 58.995 38.462 4.84 1.81 0.00 4.20
1780 1897 7.175119 GGCTTCAAACAAGGTATATATTCCCTC 59.825 40.741 4.84 0.00 0.00 4.30
1781 1898 7.175119 GCTTCAAACAAGGTATATATTCCCTCC 59.825 40.741 4.84 0.00 0.00 4.30
1782 1899 6.765403 TCAAACAAGGTATATATTCCCTCCG 58.235 40.000 4.84 3.00 0.00 4.63
1783 1900 6.328148 TCAAACAAGGTATATATTCCCTCCGT 59.672 38.462 4.84 3.51 0.00 4.69
1784 1901 6.758806 AACAAGGTATATATTCCCTCCGTT 57.241 37.500 4.84 8.25 0.00 4.44
1785 1902 6.758806 ACAAGGTATATATTCCCTCCGTTT 57.241 37.500 4.84 0.00 0.00 3.60
1786 1903 6.766429 ACAAGGTATATATTCCCTCCGTTTC 58.234 40.000 4.84 0.00 0.00 2.78
1787 1904 6.557633 ACAAGGTATATATTCCCTCCGTTTCT 59.442 38.462 4.84 0.00 0.00 2.52
1788 1905 7.731688 ACAAGGTATATATTCCCTCCGTTTCTA 59.268 37.037 4.84 0.00 0.00 2.10
1789 1906 8.591072 CAAGGTATATATTCCCTCCGTTTCTAA 58.409 37.037 4.84 0.00 0.00 2.10
1790 1907 8.731591 AGGTATATATTCCCTCCGTTTCTAAA 57.268 34.615 4.84 0.00 0.00 1.85
1791 1908 9.335211 AGGTATATATTCCCTCCGTTTCTAAAT 57.665 33.333 4.84 0.00 0.00 1.40
1797 1914 9.862149 ATATTCCCTCCGTTTCTAAATATTTGT 57.138 29.630 11.05 0.00 0.00 2.83
1798 1915 7.619964 TTCCCTCCGTTTCTAAATATTTGTC 57.380 36.000 11.05 0.00 0.00 3.18
1799 1916 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
1800 1917 7.399634 TCCCTCCGTTTCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
1801 1918 7.886446 TCCCTCCGTTTCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
1802 1919 8.182227 CCCTCCGTTTCTAAATATTTGTCTTTC 58.818 37.037 11.05 0.00 0.00 2.62
1803 1920 8.947115 CCTCCGTTTCTAAATATTTGTCTTTCT 58.053 33.333 11.05 0.00 0.00 2.52
1831 1948 8.475331 AGATTTTAACAAGTGACTACATACGG 57.525 34.615 0.00 0.00 0.00 4.02
1832 1949 8.308931 AGATTTTAACAAGTGACTACATACGGA 58.691 33.333 0.00 0.00 0.00 4.69
1833 1950 7.878477 TTTTAACAAGTGACTACATACGGAG 57.122 36.000 0.00 0.00 0.00 4.63
1852 1969 6.931838 ACGGAGTAAAATGAGTGAATCTACA 58.068 36.000 0.00 0.00 41.94 2.74
1853 1970 6.812160 ACGGAGTAAAATGAGTGAATCTACAC 59.188 38.462 0.00 0.00 41.94 2.90
1890 2007 2.742348 ACATCCGTATGTACTGGTCCA 58.258 47.619 0.00 0.00 44.66 4.02
1891 2008 3.305720 ACATCCGTATGTACTGGTCCAT 58.694 45.455 0.00 0.00 44.66 3.41
1892 2009 3.709653 ACATCCGTATGTACTGGTCCATT 59.290 43.478 0.00 0.00 44.66 3.16
1893 2010 4.163458 ACATCCGTATGTACTGGTCCATTT 59.837 41.667 0.00 0.00 44.66 2.32
1894 2011 4.131649 TCCGTATGTACTGGTCCATTTG 57.868 45.455 0.00 0.00 0.00 2.32
1895 2012 3.770388 TCCGTATGTACTGGTCCATTTGA 59.230 43.478 0.00 0.00 0.00 2.69
1896 2013 4.223255 TCCGTATGTACTGGTCCATTTGAA 59.777 41.667 0.00 0.00 0.00 2.69
1897 2014 4.938832 CCGTATGTACTGGTCCATTTGAAA 59.061 41.667 0.00 0.00 0.00 2.69
1898 2015 5.588648 CCGTATGTACTGGTCCATTTGAAAT 59.411 40.000 0.00 0.00 0.00 2.17
1899 2016 6.238374 CCGTATGTACTGGTCCATTTGAAATC 60.238 42.308 0.00 0.00 0.00 2.17
1900 2017 6.538742 CGTATGTACTGGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 0.00 2.40
1901 2018 7.254455 CGTATGTACTGGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 0.00 2.75
1902 2019 6.126863 TGTACTGGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 0.00 3.10
1903 2020 7.252612 TGTACTGGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 0.00 2.43
1904 2021 7.685481 TGTACTGGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 0.00 2.10
1905 2022 8.160765 TGTACTGGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 0.00 1.85
1906 2023 9.010029 GTACTGGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 0.00 1.52
1907 2024 8.477419 ACTGGTCCATTTGAAATCTCTAAAAA 57.523 30.769 0.00 0.00 0.00 1.94
1908 2025 8.579863 ACTGGTCCATTTGAAATCTCTAAAAAG 58.420 33.333 0.00 0.00 0.00 2.27
1909 2026 8.704849 TGGTCCATTTGAAATCTCTAAAAAGA 57.295 30.769 0.00 0.00 0.00 2.52
1910 2027 8.576442 TGGTCCATTTGAAATCTCTAAAAAGAC 58.424 33.333 0.00 0.00 0.00 3.01
1911 2028 8.576442 GGTCCATTTGAAATCTCTAAAAAGACA 58.424 33.333 0.00 0.00 0.00 3.41
1912 2029 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
1929 2046 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
1930 2047 6.555463 AGACAAATATTTAGGAACGGAGGA 57.445 37.500 0.00 0.00 0.00 3.71
1931 2048 6.954232 AGACAAATATTTAGGAACGGAGGAA 58.046 36.000 0.00 0.00 0.00 3.36
1932 2049 7.048512 AGACAAATATTTAGGAACGGAGGAAG 58.951 38.462 0.00 0.00 0.00 3.46
2003 2122 5.430007 TGTACTTGAAACTTTTCCCTTCGA 58.570 37.500 0.00 0.00 36.36 3.71
2005 2124 7.218614 TGTACTTGAAACTTTTCCCTTCGATA 58.781 34.615 0.00 0.00 36.36 2.92
2036 2159 7.387397 TCAAGTTTGAAACAACATTTGCTTTCT 59.613 29.630 11.02 0.00 34.62 2.52
2187 2310 7.995463 TTAAGAAAACAAAGAACAATTCCCG 57.005 32.000 0.00 0.00 0.00 5.14
2199 2322 5.413523 AGAACAATTCCCGTTAATTAGCGTT 59.586 36.000 18.55 6.16 0.00 4.84
2205 2328 1.005347 CCGTTAATTAGCGTTGCCGAG 60.005 52.381 18.55 0.18 35.63 4.63
2333 2473 2.487934 TCGTATACTACCAGCTCGACC 58.512 52.381 0.56 0.00 0.00 4.79
2394 2549 9.334947 TGCAAATTCAAAATTTGTAAGAATCCA 57.665 25.926 20.33 9.12 40.19 3.41
2395 2550 9.815936 GCAAATTCAAAATTTGTAAGAATCCAG 57.184 29.630 20.33 0.00 40.19 3.86
2592 2772 2.148916 TCAACGACACCTACAGCTTG 57.851 50.000 0.00 0.00 0.00 4.01
2786 2966 3.949885 TAAGGCCCAGCTCGACCGA 62.950 63.158 0.00 0.00 0.00 4.69
2802 2982 3.548014 CGACCGAGCTTTTGTTTTCATGT 60.548 43.478 0.00 0.00 0.00 3.21
2840 3035 0.036577 GATGCTGATGATCGGGAGGG 60.037 60.000 3.07 0.00 0.00 4.30
2841 3036 0.765903 ATGCTGATGATCGGGAGGGT 60.766 55.000 3.07 0.00 0.00 4.34
3005 3200 1.484356 ACAACACGTACAGCTTCGAC 58.516 50.000 9.22 0.00 0.00 4.20
3176 3374 3.640000 CCGTTCCGCCGCATCATC 61.640 66.667 0.00 0.00 0.00 2.92
3177 3375 2.889988 CGTTCCGCCGCATCATCA 60.890 61.111 0.00 0.00 0.00 3.07
3178 3376 2.246739 CGTTCCGCCGCATCATCAT 61.247 57.895 0.00 0.00 0.00 2.45
3179 3377 0.943835 CGTTCCGCCGCATCATCATA 60.944 55.000 0.00 0.00 0.00 2.15
3180 3378 1.442769 GTTCCGCCGCATCATCATAT 58.557 50.000 0.00 0.00 0.00 1.78
3188 3386 1.638133 GCATCATCATATCGCTCGCT 58.362 50.000 0.00 0.00 0.00 4.93
3232 3450 2.025584 TCGCCGTCGAATGATCCG 59.974 61.111 0.00 0.00 42.44 4.18
3300 3518 0.947244 CTGCGGTAGCCATTGAATCC 59.053 55.000 0.00 0.00 44.33 3.01
3327 3545 0.746659 ATGGATCATGTCGACGAGCA 59.253 50.000 11.62 0.00 0.00 4.26
3388 3611 5.643348 CCATTGTTGTTAGATGTAGCAGACA 59.357 40.000 0.00 0.00 43.97 3.41
3391 3614 5.853936 TGTTGTTAGATGTAGCAGACAACT 58.146 37.500 15.42 6.75 44.20 3.16
3392 3615 5.696270 TGTTGTTAGATGTAGCAGACAACTG 59.304 40.000 15.42 0.00 44.20 3.16
3393 3616 5.468540 TGTTAGATGTAGCAGACAACTGT 57.531 39.130 10.58 0.00 41.04 3.55
3394 3617 6.584185 TGTTAGATGTAGCAGACAACTGTA 57.416 37.500 10.58 0.00 41.04 2.74
3395 3618 7.170393 TGTTAGATGTAGCAGACAACTGTAT 57.830 36.000 10.58 0.00 41.04 2.29
3396 3619 7.035612 TGTTAGATGTAGCAGACAACTGTATG 58.964 38.462 10.58 0.06 41.04 2.39
3397 3620 5.667539 AGATGTAGCAGACAACTGTATGT 57.332 39.130 6.36 0.00 42.78 2.29
3398 3621 5.414360 AGATGTAGCAGACAACTGTATGTG 58.586 41.667 6.36 0.00 42.78 3.21
3399 3622 4.600692 TGTAGCAGACAACTGTATGTGT 57.399 40.909 6.36 0.00 45.04 3.72
3400 3623 5.715434 TGTAGCAGACAACTGTATGTGTA 57.285 39.130 6.36 0.00 45.04 2.90
3408 3631 7.704899 GCAGACAACTGTATGTGTATGTATGTA 59.295 37.037 6.36 0.00 45.04 2.29
3436 3659 7.480810 TGTATATGTACAGTACAGCACAAGAG 58.519 38.462 18.30 0.00 42.77 2.85
3520 3743 5.476945 CACTGGTATTTACTTTTCCAAGGCT 59.523 40.000 0.00 0.00 33.82 4.58
3539 3762 3.189702 GGCTGCAACTATAAAACCGACAA 59.810 43.478 0.50 0.00 0.00 3.18
3546 3769 6.307077 GCAACTATAAAACCGACAAATGTTCC 59.693 38.462 0.00 0.00 0.00 3.62
3550 3773 8.079809 ACTATAAAACCGACAAATGTTCCAAAG 58.920 33.333 0.00 0.00 0.00 2.77
3551 3774 4.729227 AAACCGACAAATGTTCCAAAGT 57.271 36.364 0.00 0.00 0.00 2.66
3563 3786 4.959446 CAAAGTTGGAGCTGCAGC 57.041 55.556 31.53 31.53 42.49 5.25
3564 3787 2.035421 CAAAGTTGGAGCTGCAGCA 58.965 52.632 38.24 17.55 45.16 4.41
3585 3808 4.614993 GCACTGCAAAGAAAATAACGCCTA 60.615 41.667 0.00 0.00 0.00 3.93
3613 3836 1.062002 CGGTTTTTGTCGGATCGGATG 59.938 52.381 6.23 0.00 0.00 3.51
3632 3855 1.935925 TTTCGAACGAAACAGGCCG 59.064 52.632 16.51 0.00 38.95 6.13
3633 3856 1.500512 TTTCGAACGAAACAGGCCGG 61.501 55.000 16.51 0.00 38.95 6.13
3680 3903 9.277783 AGATCATTTAGTTTAATTCCATCGGAG 57.722 33.333 0.00 0.00 31.21 4.63
3681 3904 7.801716 TCATTTAGTTTAATTCCATCGGAGG 57.198 36.000 0.00 0.00 31.21 4.30
3682 3905 6.770785 TCATTTAGTTTAATTCCATCGGAGGG 59.229 38.462 1.39 1.39 31.21 4.30
3683 3906 3.577805 AGTTTAATTCCATCGGAGGGG 57.422 47.619 9.08 0.22 31.21 4.79
3684 3907 1.954382 GTTTAATTCCATCGGAGGGGC 59.046 52.381 9.08 0.00 31.21 5.80
3685 3908 0.476771 TTAATTCCATCGGAGGGGCC 59.523 55.000 9.08 0.00 31.21 5.80
3704 3927 0.733729 CGTAGGTCCAGAGACTTCGG 59.266 60.000 0.00 0.00 43.05 4.30
3705 3928 0.456628 GTAGGTCCAGAGACTTCGGC 59.543 60.000 0.00 0.00 43.05 5.54
3706 3929 0.683504 TAGGTCCAGAGACTTCGGCC 60.684 60.000 0.00 0.00 43.05 6.13
3707 3930 2.182030 GTCCAGAGACTTCGGCCG 59.818 66.667 22.12 22.12 40.10 6.13
3708 3931 2.035155 TCCAGAGACTTCGGCCGA 59.965 61.111 27.28 27.28 0.00 5.54
3709 3932 2.046864 TCCAGAGACTTCGGCCGAG 61.047 63.158 29.20 23.25 0.00 4.63
3710 3933 2.202676 CAGAGACTTCGGCCGAGC 60.203 66.667 29.20 20.83 0.00 5.03
3711 3934 3.816524 AGAGACTTCGGCCGAGCG 61.817 66.667 29.20 24.32 0.00 5.03
3712 3935 3.812019 GAGACTTCGGCCGAGCGA 61.812 66.667 29.20 13.38 0.00 4.93
3713 3936 3.338126 GAGACTTCGGCCGAGCGAA 62.338 63.158 29.20 12.96 0.00 4.70
3714 3937 2.431942 GACTTCGGCCGAGCGAAA 60.432 61.111 29.20 12.53 0.00 3.46
3715 3938 2.727684 GACTTCGGCCGAGCGAAAC 61.728 63.158 29.20 13.60 0.00 2.78
3716 3939 3.488090 CTTCGGCCGAGCGAAACC 61.488 66.667 29.20 0.00 0.00 3.27
4238 4461 4.003788 CGTGGAGGTGCCTCGGTT 62.004 66.667 11.66 0.00 46.89 4.44
4239 4462 2.430367 GTGGAGGTGCCTCGGTTT 59.570 61.111 11.66 0.00 43.59 3.27
4240 4463 1.671379 GTGGAGGTGCCTCGGTTTC 60.671 63.158 11.66 0.00 43.59 2.78
4241 4464 2.434359 GGAGGTGCCTCGGTTTCG 60.434 66.667 11.66 0.00 43.59 3.46
4242 4465 2.434359 GAGGTGCCTCGGTTTCGG 60.434 66.667 2.11 0.00 36.95 4.30
4243 4466 4.699522 AGGTGCCTCGGTTTCGGC 62.700 66.667 0.00 0.00 46.46 5.54
4297 4520 2.202892 GGCCGGATCTGGTCGAAC 60.203 66.667 21.88 4.55 0.00 3.95
4298 4521 2.202892 GCCGGATCTGGTCGAACC 60.203 66.667 21.88 0.00 39.22 3.62
4299 4522 2.722201 GCCGGATCTGGTCGAACCT 61.722 63.158 21.88 0.00 39.58 3.50
4300 4523 1.141881 CCGGATCTGGTCGAACCTG 59.858 63.158 12.93 1.30 39.58 4.00
4301 4524 1.141881 CGGATCTGGTCGAACCTGG 59.858 63.158 0.00 0.00 39.58 4.45
4302 4525 1.153349 GGATCTGGTCGAACCTGGC 60.153 63.158 0.00 0.00 39.58 4.85
4303 4526 1.153349 GATCTGGTCGAACCTGGCC 60.153 63.158 0.00 0.00 39.58 5.36
4304 4527 1.899437 GATCTGGTCGAACCTGGCCA 61.899 60.000 4.71 4.71 39.58 5.36
4305 4528 2.046892 CTGGTCGAACCTGGCCAG 60.047 66.667 26.87 26.87 41.89 4.85
4306 4529 2.525629 TGGTCGAACCTGGCCAGA 60.526 61.111 34.91 11.39 39.58 3.86
4307 4530 1.918293 TGGTCGAACCTGGCCAGAT 60.918 57.895 34.91 22.08 39.58 2.90
4308 4531 1.153349 GGTCGAACCTGGCCAGATC 60.153 63.158 34.91 27.28 34.73 2.75
4309 4532 1.153349 GTCGAACCTGGCCAGATCC 60.153 63.158 34.91 19.45 0.00 3.36
4310 4533 2.202932 CGAACCTGGCCAGATCCG 60.203 66.667 34.91 26.22 0.00 4.18
4311 4534 2.990479 GAACCTGGCCAGATCCGT 59.010 61.111 34.91 20.11 0.00 4.69
4312 4535 1.450312 GAACCTGGCCAGATCCGTG 60.450 63.158 34.91 18.23 0.00 4.94
4313 4536 2.876368 GAACCTGGCCAGATCCGTGG 62.876 65.000 34.91 18.84 41.01 4.94
4314 4537 3.402681 CCTGGCCAGATCCGTGGT 61.403 66.667 34.91 0.00 40.09 4.16
4315 4538 2.124983 CTGGCCAGATCCGTGGTG 60.125 66.667 29.88 0.00 40.09 4.17
4316 4539 2.927856 TGGCCAGATCCGTGGTGT 60.928 61.111 0.00 0.00 40.09 4.16
4317 4540 2.436646 GGCCAGATCCGTGGTGTG 60.437 66.667 0.00 0.00 40.09 3.82
4318 4541 2.347490 GCCAGATCCGTGGTGTGT 59.653 61.111 3.17 0.00 40.09 3.72
4319 4542 1.302511 GCCAGATCCGTGGTGTGTT 60.303 57.895 3.17 0.00 40.09 3.32
4320 4543 0.889186 GCCAGATCCGTGGTGTGTTT 60.889 55.000 3.17 0.00 40.09 2.83
4321 4544 0.874390 CCAGATCCGTGGTGTGTTTG 59.126 55.000 0.00 0.00 32.32 2.93
4322 4545 1.542328 CCAGATCCGTGGTGTGTTTGA 60.542 52.381 0.00 0.00 32.32 2.69
4323 4546 1.531149 CAGATCCGTGGTGTGTTTGAC 59.469 52.381 0.00 0.00 0.00 3.18
4324 4547 0.511221 GATCCGTGGTGTGTTTGACG 59.489 55.000 0.00 0.00 0.00 4.35
4325 4548 1.503818 ATCCGTGGTGTGTTTGACGC 61.504 55.000 0.00 0.00 0.00 5.19
4326 4549 2.053465 CGTGGTGTGTTTGACGCG 60.053 61.111 3.53 3.53 35.76 6.01
4327 4550 2.351888 GTGGTGTGTTTGACGCGC 60.352 61.111 5.73 0.00 38.30 6.86
4328 4551 3.931130 TGGTGTGTTTGACGCGCG 61.931 61.111 30.96 30.96 39.80 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 42 6.095860 ACTCAATGCTTATGTGTTGTGCATAT 59.904 34.615 0.00 0.00 42.57 1.78
41 43 5.415389 ACTCAATGCTTATGTGTTGTGCATA 59.585 36.000 0.00 0.00 42.57 3.14
43 45 3.569277 ACTCAATGCTTATGTGTTGTGCA 59.431 39.130 0.00 0.00 38.05 4.57
44 46 4.164822 ACTCAATGCTTATGTGTTGTGC 57.835 40.909 0.00 0.00 0.00 4.57
45 47 6.667370 TGTTACTCAATGCTTATGTGTTGTG 58.333 36.000 0.00 0.00 0.00 3.33
46 48 6.875948 TGTTACTCAATGCTTATGTGTTGT 57.124 33.333 0.00 0.00 0.00 3.32
47 49 8.022550 TGATTGTTACTCAATGCTTATGTGTTG 58.977 33.333 0.00 0.00 45.49 3.33
48 50 8.023128 GTGATTGTTACTCAATGCTTATGTGTT 58.977 33.333 0.00 0.00 45.49 3.32
49 51 7.530010 GTGATTGTTACTCAATGCTTATGTGT 58.470 34.615 0.00 0.00 45.49 3.72
50 52 6.684131 CGTGATTGTTACTCAATGCTTATGTG 59.316 38.462 0.00 0.00 45.49 3.21
51 53 6.593770 TCGTGATTGTTACTCAATGCTTATGT 59.406 34.615 0.00 0.00 45.49 2.29
52 54 6.901887 GTCGTGATTGTTACTCAATGCTTATG 59.098 38.462 0.00 0.00 45.49 1.90
53 55 6.593770 TGTCGTGATTGTTACTCAATGCTTAT 59.406 34.615 0.00 0.00 45.49 1.73
54 56 5.929415 TGTCGTGATTGTTACTCAATGCTTA 59.071 36.000 0.00 0.00 45.49 3.09
55 57 4.754618 TGTCGTGATTGTTACTCAATGCTT 59.245 37.500 0.00 0.00 45.49 3.91
56 58 4.314961 TGTCGTGATTGTTACTCAATGCT 58.685 39.130 0.00 0.00 45.49 3.79
57 59 4.661993 TGTCGTGATTGTTACTCAATGC 57.338 40.909 0.00 0.00 45.49 3.56
58 60 6.901887 GCTTATGTCGTGATTGTTACTCAATG 59.098 38.462 0.00 0.00 45.49 2.82
76 78 1.296056 GACGGTTGGCGTGCTTATGT 61.296 55.000 0.00 0.00 0.00 2.29
89 91 2.031163 GCAGACCAGCAGACGGTT 59.969 61.111 0.00 0.00 36.69 4.44
97 99 3.303593 CGTCATCAATTATGCAGACCAGC 60.304 47.826 0.00 0.00 35.38 4.85
98 100 4.122046 TCGTCATCAATTATGCAGACCAG 58.878 43.478 0.00 0.00 35.38 4.00
99 101 4.135747 TCGTCATCAATTATGCAGACCA 57.864 40.909 0.00 0.00 35.38 4.02
100 102 4.751600 TGATCGTCATCAATTATGCAGACC 59.248 41.667 0.00 0.00 35.99 3.85
101 103 5.912360 TGATCGTCATCAATTATGCAGAC 57.088 39.130 0.00 0.00 35.99 3.51
171 174 2.889606 TAAGCCAGGAAGCGCCACA 61.890 57.895 2.29 0.00 40.02 4.17
201 219 2.238646 TGTGTTTTGTCTGTGGGTCTCT 59.761 45.455 0.00 0.00 0.00 3.10
202 220 2.354821 GTGTGTTTTGTCTGTGGGTCTC 59.645 50.000 0.00 0.00 0.00 3.36
203 221 2.290641 TGTGTGTTTTGTCTGTGGGTCT 60.291 45.455 0.00 0.00 0.00 3.85
204 222 2.088423 TGTGTGTTTTGTCTGTGGGTC 58.912 47.619 0.00 0.00 0.00 4.46
208 233 4.104776 GTTCCATGTGTGTTTTGTCTGTG 58.895 43.478 0.00 0.00 0.00 3.66
248 273 0.320073 TGTACAAGGGCTACACGCAC 60.320 55.000 0.00 0.00 44.51 5.34
251 278 2.961526 ATCTGTACAAGGGCTACACG 57.038 50.000 0.00 0.00 0.00 4.49
285 312 6.403200 CCAACAACACCTAATTAATCAGTCGG 60.403 42.308 0.00 0.00 0.00 4.79
286 313 6.370442 TCCAACAACACCTAATTAATCAGTCG 59.630 38.462 0.00 0.00 0.00 4.18
287 314 7.174253 TGTCCAACAACACCTAATTAATCAGTC 59.826 37.037 0.00 0.00 0.00 3.51
288 315 7.001674 TGTCCAACAACACCTAATTAATCAGT 58.998 34.615 0.00 0.00 0.00 3.41
289 316 7.305474 GTGTCCAACAACACCTAATTAATCAG 58.695 38.462 0.00 0.00 43.01 2.90
290 317 7.209471 GTGTCCAACAACACCTAATTAATCA 57.791 36.000 0.00 0.00 43.01 2.57
358 402 1.072965 AGCCTGTGGAAGAAGGAACTG 59.927 52.381 0.00 0.00 40.86 3.16
364 408 0.397941 TGTGGAGCCTGTGGAAGAAG 59.602 55.000 0.00 0.00 0.00 2.85
365 409 0.397941 CTGTGGAGCCTGTGGAAGAA 59.602 55.000 0.00 0.00 0.00 2.52
366 410 1.483595 CCTGTGGAGCCTGTGGAAGA 61.484 60.000 0.00 0.00 0.00 2.87
375 419 2.362120 AGCAATGCCTGTGGAGCC 60.362 61.111 0.00 0.00 0.00 4.70
454 498 2.670148 GGGGCTGGTTGATCGTCCT 61.670 63.158 7.36 0.00 0.00 3.85
490 537 1.059692 GAGTGTGCGTCAACGATGATG 59.940 52.381 10.32 10.32 44.03 3.07
565 612 0.685785 TTGGGTGTTCTTGGCTGCAA 60.686 50.000 0.50 0.00 0.00 4.08
567 614 1.363807 GTTGGGTGTTCTTGGCTGC 59.636 57.895 0.00 0.00 0.00 5.25
638 693 7.068702 TGGCTTTGGAGTTTGGATCAATATAT 58.931 34.615 0.00 0.00 0.00 0.86
639 694 6.430864 TGGCTTTGGAGTTTGGATCAATATA 58.569 36.000 0.00 0.00 0.00 0.86
645 700 2.428530 GGATGGCTTTGGAGTTTGGATC 59.571 50.000 0.00 0.00 0.00 3.36
646 701 2.225343 TGGATGGCTTTGGAGTTTGGAT 60.225 45.455 0.00 0.00 0.00 3.41
647 702 1.146774 TGGATGGCTTTGGAGTTTGGA 59.853 47.619 0.00 0.00 0.00 3.53
648 703 1.631405 TGGATGGCTTTGGAGTTTGG 58.369 50.000 0.00 0.00 0.00 3.28
649 704 2.167075 GGATGGATGGCTTTGGAGTTTG 59.833 50.000 0.00 0.00 0.00 2.93
650 705 2.460669 GGATGGATGGCTTTGGAGTTT 58.539 47.619 0.00 0.00 0.00 2.66
651 706 1.683011 CGGATGGATGGCTTTGGAGTT 60.683 52.381 0.00 0.00 0.00 3.01
652 707 0.107017 CGGATGGATGGCTTTGGAGT 60.107 55.000 0.00 0.00 0.00 3.85
653 708 0.820891 CCGGATGGATGGCTTTGGAG 60.821 60.000 0.00 0.00 37.49 3.86
696 751 0.178944 TCAACCAACTCTCCCTCGGA 60.179 55.000 0.00 0.00 0.00 4.55
729 788 2.766828 AGCATCACCTACCTGAACCTAC 59.233 50.000 0.00 0.00 0.00 3.18
788 847 1.138661 CAAGCAAGGAGGCTAGAGAGG 59.861 57.143 0.00 0.00 45.07 3.69
858 943 7.562454 ACGTCAGAAGGAATTAAACAAGAAA 57.438 32.000 0.00 0.00 0.00 2.52
923 1008 2.740981 CCTACAGCTGCTTCAAGAAGTG 59.259 50.000 15.27 4.55 40.45 3.16
941 1027 1.303888 ACGACGAACTCCTGGCCTA 60.304 57.895 3.32 0.00 0.00 3.93
942 1028 2.600769 ACGACGAACTCCTGGCCT 60.601 61.111 3.32 0.00 0.00 5.19
972 1058 1.274712 CCTCCCTGAGAAAGAGCACT 58.725 55.000 0.00 0.00 0.00 4.40
973 1059 0.251634 CCCTCCCTGAGAAAGAGCAC 59.748 60.000 0.00 0.00 0.00 4.40
985 1071 0.983378 GGCATCACAGTACCCTCCCT 60.983 60.000 0.00 0.00 0.00 4.20
986 1072 1.527370 GGCATCACAGTACCCTCCC 59.473 63.158 0.00 0.00 0.00 4.30
992 1078 2.890474 CCGGCGGCATCACAGTAC 60.890 66.667 15.42 0.00 0.00 2.73
1109 1204 1.000993 GCCTCTGTGGGGAGAGAGA 59.999 63.158 0.00 0.00 41.95 3.10
1110 1205 1.305633 TGCCTCTGTGGGGAGAGAG 60.306 63.158 0.00 0.00 41.95 3.20
1154 1251 5.012148 TCTCCCAAAAGAAAACAACAAACCA 59.988 36.000 0.00 0.00 0.00 3.67
1156 1253 6.092122 CCTTCTCCCAAAAGAAAACAACAAAC 59.908 38.462 0.00 0.00 34.95 2.93
1168 1265 5.535753 ACAATCAAACCTTCTCCCAAAAG 57.464 39.130 0.00 0.00 0.00 2.27
1172 1269 4.453480 AGAACAATCAAACCTTCTCCCA 57.547 40.909 0.00 0.00 0.00 4.37
1173 1270 4.584743 ACAAGAACAATCAAACCTTCTCCC 59.415 41.667 0.00 0.00 0.00 4.30
1174 1271 5.774498 ACAAGAACAATCAAACCTTCTCC 57.226 39.130 0.00 0.00 0.00 3.71
1176 1273 6.239036 GGCTAACAAGAACAATCAAACCTTCT 60.239 38.462 0.00 0.00 0.00 2.85
1179 1276 4.023193 CGGCTAACAAGAACAATCAAACCT 60.023 41.667 0.00 0.00 0.00 3.50
1180 1277 4.226761 CGGCTAACAAGAACAATCAAACC 58.773 43.478 0.00 0.00 0.00 3.27
1181 1278 4.855531 ACGGCTAACAAGAACAATCAAAC 58.144 39.130 0.00 0.00 0.00 2.93
1184 1281 3.682858 GCTACGGCTAACAAGAACAATCA 59.317 43.478 0.00 0.00 35.22 2.57
1185 1282 4.260334 GCTACGGCTAACAAGAACAATC 57.740 45.455 0.00 0.00 35.22 2.67
1220 1320 9.268282 AGAAAAGAACAACTCAGGGATATACTA 57.732 33.333 0.00 0.00 0.00 1.82
1267 1367 7.542477 CGTACAGATCATCTAACAGAACAGTTT 59.458 37.037 0.00 0.00 33.07 2.66
1302 1402 9.255304 GTTTGCAGAGTATCAAATTACCAAAAA 57.745 29.630 0.00 0.00 37.82 1.94
1304 1404 8.081633 CAGTTTGCAGAGTATCAAATTACCAAA 58.918 33.333 0.00 0.00 37.82 3.28
1307 1407 7.377766 TCAGTTTGCAGAGTATCAAATTACC 57.622 36.000 0.00 0.00 37.82 2.85
1312 1412 7.566760 TCTTTTCAGTTTGCAGAGTATCAAA 57.433 32.000 0.00 0.00 37.82 2.69
1320 1420 4.097892 GGAAGGTTCTTTTCAGTTTGCAGA 59.902 41.667 0.00 0.00 0.00 4.26
1339 1439 4.699257 CACCTGATTCTGAGGAAAAGGAAG 59.301 45.833 13.89 6.09 39.64 3.46
1357 1460 9.303537 GTAGCTTTAGTAGTTAAGATTCACCTG 57.696 37.037 0.00 0.00 0.00 4.00
1368 1471 8.863086 TCAGGTTTCTTGTAGCTTTAGTAGTTA 58.137 33.333 0.00 0.00 0.00 2.24
1466 1575 8.279970 TCATGAATCTTAACCACGAAAATGAT 57.720 30.769 0.00 0.00 0.00 2.45
1489 1598 9.339850 GGAGATTAGTATGTACAGTACTTCTCA 57.660 37.037 25.36 11.40 37.57 3.27
1621 1736 5.382618 AAAAGAGTGTGAAATGATGAGGC 57.617 39.130 0.00 0.00 0.00 4.70
1647 1762 5.553290 TGTGAAACACGAGACATTTGAAA 57.447 34.783 0.00 0.00 45.67 2.69
1680 1795 1.547675 GGGAATGACCTGCTTGTCCAA 60.548 52.381 4.14 0.00 38.98 3.53
1688 1803 2.450476 ACAAGAATGGGAATGACCTGC 58.550 47.619 0.00 0.00 38.98 4.85
1721 1838 1.478105 AGGCCAATCGGAATGAAAAGC 59.522 47.619 5.01 0.00 0.00 3.51
1763 1880 7.005709 AGAAACGGAGGGAATATATACCTTG 57.994 40.000 9.56 8.38 34.02 3.61
1774 1891 7.399634 AGACAAATATTTAGAAACGGAGGGAA 58.600 34.615 0.00 0.00 0.00 3.97
1775 1892 6.954232 AGACAAATATTTAGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
1776 1893 7.625828 AAGACAAATATTTAGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
1777 1894 8.947115 AGAAAGACAAATATTTAGAAACGGAGG 58.053 33.333 0.00 0.00 0.00 4.30
1805 1922 8.932791 CCGTATGTAGTCACTTGTTAAAATCTT 58.067 33.333 0.00 0.00 0.00 2.40
1806 1923 8.308931 TCCGTATGTAGTCACTTGTTAAAATCT 58.691 33.333 0.00 0.00 0.00 2.40
1807 1924 8.470040 TCCGTATGTAGTCACTTGTTAAAATC 57.530 34.615 0.00 0.00 0.00 2.17
1808 1925 8.092687 ACTCCGTATGTAGTCACTTGTTAAAAT 58.907 33.333 0.00 0.00 0.00 1.82
1809 1926 7.436118 ACTCCGTATGTAGTCACTTGTTAAAA 58.564 34.615 0.00 0.00 0.00 1.52
1810 1927 6.985117 ACTCCGTATGTAGTCACTTGTTAAA 58.015 36.000 0.00 0.00 0.00 1.52
1811 1928 6.579666 ACTCCGTATGTAGTCACTTGTTAA 57.420 37.500 0.00 0.00 0.00 2.01
1812 1929 7.686438 TTACTCCGTATGTAGTCACTTGTTA 57.314 36.000 0.00 0.00 0.00 2.41
1813 1930 6.579666 TTACTCCGTATGTAGTCACTTGTT 57.420 37.500 0.00 0.00 0.00 2.83
1814 1931 6.579666 TTTACTCCGTATGTAGTCACTTGT 57.420 37.500 0.00 0.00 0.00 3.16
1815 1932 7.758076 TCATTTTACTCCGTATGTAGTCACTTG 59.242 37.037 0.00 0.00 0.00 3.16
1816 1933 7.833786 TCATTTTACTCCGTATGTAGTCACTT 58.166 34.615 0.00 0.00 0.00 3.16
1817 1934 7.122353 ACTCATTTTACTCCGTATGTAGTCACT 59.878 37.037 0.00 0.00 0.00 3.41
1818 1935 7.220300 CACTCATTTTACTCCGTATGTAGTCAC 59.780 40.741 0.00 0.00 0.00 3.67
1819 1936 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
1820 1937 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
1821 1938 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
1822 1939 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
1823 1940 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
1824 1941 7.556844 AGATTCACTCATTTTACTCCGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
1825 1942 8.969267 GTAGATTCACTCATTTTACTCCGTATG 58.031 37.037 0.00 0.00 0.00 2.39
1826 1943 8.692710 TGTAGATTCACTCATTTTACTCCGTAT 58.307 33.333 0.00 0.00 0.00 3.06
1827 1944 7.972277 GTGTAGATTCACTCATTTTACTCCGTA 59.028 37.037 0.00 0.00 35.68 4.02
1828 1945 6.812160 GTGTAGATTCACTCATTTTACTCCGT 59.188 38.462 0.00 0.00 35.68 4.69
1829 1946 7.036220 AGTGTAGATTCACTCATTTTACTCCG 58.964 38.462 0.00 0.00 44.07 4.63
1869 1986 3.900971 TGGACCAGTACATACGGATGTA 58.099 45.455 16.71 16.71 44.77 2.29
1871 1988 4.336889 AATGGACCAGTACATACGGATG 57.663 45.455 5.94 5.94 31.68 3.51
1872 1989 4.407621 TCAAATGGACCAGTACATACGGAT 59.592 41.667 0.00 0.00 31.68 4.18
1873 1990 3.770388 TCAAATGGACCAGTACATACGGA 59.230 43.478 0.00 0.00 31.68 4.69
1874 1991 4.131649 TCAAATGGACCAGTACATACGG 57.868 45.455 0.00 0.00 31.68 4.02
1875 1992 6.538742 AGATTTCAAATGGACCAGTACATACG 59.461 38.462 0.00 0.00 31.68 3.06
1876 1993 7.770897 AGAGATTTCAAATGGACCAGTACATAC 59.229 37.037 0.00 0.00 31.68 2.39
1877 1994 7.861629 AGAGATTTCAAATGGACCAGTACATA 58.138 34.615 0.00 0.00 31.68 2.29
1878 1995 6.725364 AGAGATTTCAAATGGACCAGTACAT 58.275 36.000 0.00 0.00 35.14 2.29
1879 1996 6.126863 AGAGATTTCAAATGGACCAGTACA 57.873 37.500 0.00 0.00 0.00 2.90
1880 1997 8.561738 TTTAGAGATTTCAAATGGACCAGTAC 57.438 34.615 0.00 0.00 0.00 2.73
1881 1998 9.581289 TTTTTAGAGATTTCAAATGGACCAGTA 57.419 29.630 0.00 0.00 0.00 2.74
1882 1999 8.477419 TTTTTAGAGATTTCAAATGGACCAGT 57.523 30.769 0.00 0.00 0.00 4.00
1883 2000 8.796475 TCTTTTTAGAGATTTCAAATGGACCAG 58.204 33.333 0.00 0.00 0.00 4.00
1884 2001 8.576442 GTCTTTTTAGAGATTTCAAATGGACCA 58.424 33.333 0.00 0.00 0.00 4.02
1885 2002 8.576442 TGTCTTTTTAGAGATTTCAAATGGACC 58.424 33.333 0.00 0.00 0.00 4.46
1886 2003 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
1903 2020 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
1904 2021 7.886446 TCCTCCGTTCCTAAATATTTGTCTTTT 59.114 33.333 11.05 0.00 0.00 2.27
1905 2022 7.399634 TCCTCCGTTCCTAAATATTTGTCTTT 58.600 34.615 11.05 0.00 0.00 2.52
1906 2023 6.954232 TCCTCCGTTCCTAAATATTTGTCTT 58.046 36.000 11.05 0.00 0.00 3.01
1907 2024 6.555463 TCCTCCGTTCCTAAATATTTGTCT 57.445 37.500 11.05 0.00 0.00 3.41
1908 2025 6.822170 ACTTCCTCCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
1909 2026 6.718294 ACTTCCTCCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
1910 2027 8.904099 ATACTTCCTCCGTTCCTAAATATTTG 57.096 34.615 11.05 1.40 0.00 2.32
1913 2030 8.979534 GGATATACTTCCTCCGTTCCTAAATAT 58.020 37.037 0.00 0.00 32.68 1.28
1914 2031 8.175431 AGGATATACTTCCTCCGTTCCTAAATA 58.825 37.037 0.00 0.00 42.71 1.40
1915 2032 7.017531 AGGATATACTTCCTCCGTTCCTAAAT 58.982 38.462 0.00 0.00 42.71 1.40
1916 2033 6.379579 AGGATATACTTCCTCCGTTCCTAAA 58.620 40.000 0.00 0.00 42.71 1.85
1917 2034 5.961897 AGGATATACTTCCTCCGTTCCTAA 58.038 41.667 0.00 0.00 42.71 2.69
1918 2035 5.595814 AGGATATACTTCCTCCGTTCCTA 57.404 43.478 0.00 0.00 42.71 2.94
1919 2036 4.472690 AGGATATACTTCCTCCGTTCCT 57.527 45.455 0.00 0.00 42.71 3.36
1920 2037 4.344390 ACAAGGATATACTTCCTCCGTTCC 59.656 45.833 0.00 0.00 45.63 3.62
1921 2038 5.532664 ACAAGGATATACTTCCTCCGTTC 57.467 43.478 0.00 0.00 45.63 3.95
1922 2039 6.134754 ACTACAAGGATATACTTCCTCCGTT 58.865 40.000 0.00 0.00 45.63 4.44
1923 2040 5.703310 ACTACAAGGATATACTTCCTCCGT 58.297 41.667 0.00 0.00 45.63 4.69
1924 2041 6.040616 ACAACTACAAGGATATACTTCCTCCG 59.959 42.308 0.00 0.00 45.63 4.63
1925 2042 7.210873 CACAACTACAAGGATATACTTCCTCC 58.789 42.308 0.00 0.00 45.63 4.30
1926 2043 6.702282 GCACAACTACAAGGATATACTTCCTC 59.298 42.308 0.00 0.00 45.63 3.71
1928 2045 6.583562 AGCACAACTACAAGGATATACTTCC 58.416 40.000 0.00 0.00 35.90 3.46
1929 2046 9.595823 TTAAGCACAACTACAAGGATATACTTC 57.404 33.333 0.00 0.00 0.00 3.01
1994 2111 7.165485 TCAAACTTGAATTCTATCGAAGGGAA 58.835 34.615 7.05 0.00 33.55 3.97
2005 2124 8.177013 GCAAATGTTGTTTCAAACTTGAATTCT 58.823 29.630 7.05 0.00 45.65 2.40
2022 2141 2.224113 ACCTGCCAGAAAGCAAATGTTG 60.224 45.455 0.00 0.00 43.52 3.33
2024 2143 1.615392 GACCTGCCAGAAAGCAAATGT 59.385 47.619 0.00 0.00 43.52 2.71
2025 2144 1.891150 AGACCTGCCAGAAAGCAAATG 59.109 47.619 0.00 0.00 43.52 2.32
2030 2149 0.320771 TCGAAGACCTGCCAGAAAGC 60.321 55.000 0.00 0.00 0.00 3.51
2036 2159 1.371183 CCACTTCGAAGACCTGCCA 59.629 57.895 31.08 0.00 34.32 4.92
2080 2203 2.542020 TGTGAAGCATGTTCTTCGGA 57.458 45.000 8.10 0.00 44.01 4.55
2199 2322 3.066203 GGTTCACTTTTCTTTTCTCGGCA 59.934 43.478 0.00 0.00 0.00 5.69
2205 2328 7.334749 GCGTAAAATGGTTCACTTTTCTTTTC 58.665 34.615 0.00 0.00 0.00 2.29
2387 2542 9.995003 GAATTCTGACACTTATATCTGGATTCT 57.005 33.333 0.00 0.00 36.53 2.40
2388 2543 9.770097 TGAATTCTGACACTTATATCTGGATTC 57.230 33.333 7.05 5.60 38.41 2.52
2397 2552 9.098355 CCTCGAATTTGAATTCTGACACTTATA 57.902 33.333 7.05 0.00 41.99 0.98
2398 2553 7.607991 ACCTCGAATTTGAATTCTGACACTTAT 59.392 33.333 7.05 0.00 41.99 1.73
2399 2554 6.934645 ACCTCGAATTTGAATTCTGACACTTA 59.065 34.615 7.05 0.00 41.99 2.24
2400 2555 5.765182 ACCTCGAATTTGAATTCTGACACTT 59.235 36.000 7.05 0.00 41.99 3.16
2401 2556 5.180117 CACCTCGAATTTGAATTCTGACACT 59.820 40.000 7.05 0.00 41.99 3.55
2402 2557 5.179368 TCACCTCGAATTTGAATTCTGACAC 59.821 40.000 7.05 0.00 41.99 3.67
2403 2558 5.304778 TCACCTCGAATTTGAATTCTGACA 58.695 37.500 7.05 0.00 41.99 3.58
2404 2559 5.862924 TCACCTCGAATTTGAATTCTGAC 57.137 39.130 7.05 0.00 41.99 3.51
2426 2581 0.801067 GCTCGTCGCGTACCTGAATT 60.801 55.000 5.77 0.00 0.00 2.17
2782 2962 3.548014 CGACATGAAAACAAAAGCTCGGT 60.548 43.478 0.00 0.00 0.00 4.69
2786 2966 3.311322 TCGTCGACATGAAAACAAAAGCT 59.689 39.130 17.16 0.00 0.00 3.74
2787 2967 3.417645 GTCGTCGACATGAAAACAAAAGC 59.582 43.478 20.28 0.00 32.09 3.51
2788 2968 3.653113 CGTCGTCGACATGAAAACAAAAG 59.347 43.478 24.13 0.32 39.71 2.27
2790 2970 2.858941 TCGTCGTCGACATGAAAACAAA 59.141 40.909 24.13 0.00 41.35 2.83
2791 2971 2.461903 TCGTCGTCGACATGAAAACAA 58.538 42.857 24.13 0.00 41.35 2.83
2792 2972 2.122563 TCGTCGTCGACATGAAAACA 57.877 45.000 24.13 0.00 41.35 2.83
2816 2996 1.067354 CCCGATCATCAGCATCATCGA 60.067 52.381 1.83 0.00 40.48 3.59
2817 2997 1.067354 TCCCGATCATCAGCATCATCG 60.067 52.381 0.00 0.00 38.28 3.84
2825 3005 1.109920 ACGACCCTCCCGATCATCAG 61.110 60.000 0.00 0.00 0.00 2.90
2971 3166 0.602905 GTTGTAGCTGTTCCGCACCT 60.603 55.000 0.00 0.00 0.00 4.00
3161 3359 1.394917 GATATGATGATGCGGCGGAAC 59.605 52.381 4.50 2.47 0.00 3.62
3167 3365 0.919300 CGAGCGATATGATGATGCGG 59.081 55.000 0.00 0.00 0.00 5.69
3188 3386 2.701423 AGCATGAATTAATGGCATGGCA 59.299 40.909 25.52 25.52 39.71 4.92
3232 3450 5.861251 CACACATGTAAGAAGACTCAGAGAC 59.139 44.000 3.79 0.00 0.00 3.36
3327 3545 0.553819 ACCAGAGAGGCCGAGTCTAT 59.446 55.000 0.00 0.00 43.14 1.98
3408 3631 9.914131 CTTGTGCTGTACTGTACATATACATAT 57.086 33.333 19.99 0.00 40.57 1.78
3496 3719 5.476945 AGCCTTGGAAAAGTAAATACCAGTG 59.523 40.000 0.00 0.00 32.16 3.66
3505 3728 3.295973 AGTTGCAGCCTTGGAAAAGTAA 58.704 40.909 0.00 0.00 36.34 2.24
3506 3729 2.944129 AGTTGCAGCCTTGGAAAAGTA 58.056 42.857 0.00 0.00 36.34 2.24
3520 3743 6.320494 ACATTTGTCGGTTTTATAGTTGCA 57.680 33.333 0.00 0.00 0.00 4.08
3546 3769 0.318445 GTGCTGCAGCTCCAACTTTG 60.318 55.000 36.61 0.00 42.66 2.77
3550 3773 2.952245 CAGTGCTGCAGCTCCAAC 59.048 61.111 36.61 26.41 42.66 3.77
3560 3783 3.120121 GCGTTATTTTCTTTGCAGTGCTG 59.880 43.478 17.60 6.83 0.00 4.41
3561 3784 3.308530 GCGTTATTTTCTTTGCAGTGCT 58.691 40.909 17.60 0.00 0.00 4.40
3562 3785 2.408368 GGCGTTATTTTCTTTGCAGTGC 59.592 45.455 8.58 8.58 0.00 4.40
3563 3786 3.900941 AGGCGTTATTTTCTTTGCAGTG 58.099 40.909 0.00 0.00 0.00 3.66
3564 3787 5.699097 TTAGGCGTTATTTTCTTTGCAGT 57.301 34.783 0.00 0.00 0.00 4.40
3585 3808 5.006358 CGATCCGACAAAAACCGATATCTTT 59.994 40.000 0.34 0.00 0.00 2.52
3630 3853 2.416547 CTCAAATATATTGCTCGCCCGG 59.583 50.000 0.00 0.00 0.00 5.73
3631 3854 2.159653 GCTCAAATATATTGCTCGCCCG 60.160 50.000 0.00 0.00 0.00 6.13
3632 3855 3.077359 AGCTCAAATATATTGCTCGCCC 58.923 45.455 0.00 0.00 0.00 6.13
3633 3856 5.171476 TCTAGCTCAAATATATTGCTCGCC 58.829 41.667 11.00 0.00 35.47 5.54
3668 3891 2.927056 GGCCCCTCCGATGGAATT 59.073 61.111 0.00 0.00 0.00 2.17
3677 3900 4.791069 TGGACCTACGGCCCCTCC 62.791 72.222 0.00 0.00 0.00 4.30
3678 3901 3.155167 CTGGACCTACGGCCCCTC 61.155 72.222 0.00 0.00 0.00 4.30
3679 3902 3.680196 TCTGGACCTACGGCCCCT 61.680 66.667 0.00 0.00 0.00 4.79
3680 3903 3.155167 CTCTGGACCTACGGCCCC 61.155 72.222 0.00 0.00 0.00 5.80
3681 3904 2.043248 TCTCTGGACCTACGGCCC 60.043 66.667 0.00 0.00 0.00 5.80
3682 3905 0.971447 AAGTCTCTGGACCTACGGCC 60.971 60.000 0.00 0.00 43.05 6.13
3683 3906 0.456628 GAAGTCTCTGGACCTACGGC 59.543 60.000 0.00 0.00 43.05 5.68
3684 3907 0.733729 CGAAGTCTCTGGACCTACGG 59.266 60.000 0.00 0.00 43.05 4.02
3685 3908 0.733729 CCGAAGTCTCTGGACCTACG 59.266 60.000 0.00 0.00 43.05 3.51
3686 3909 0.456628 GCCGAAGTCTCTGGACCTAC 59.543 60.000 0.00 0.00 43.05 3.18
3687 3910 0.683504 GGCCGAAGTCTCTGGACCTA 60.684 60.000 0.00 0.00 43.05 3.08
3688 3911 1.985116 GGCCGAAGTCTCTGGACCT 60.985 63.158 0.00 0.00 43.05 3.85
3689 3912 2.579738 GGCCGAAGTCTCTGGACC 59.420 66.667 0.00 0.00 43.05 4.46
3690 3913 2.182030 CGGCCGAAGTCTCTGGAC 59.818 66.667 24.07 0.00 42.41 4.02
3691 3914 2.035155 TCGGCCGAAGTCTCTGGA 59.965 61.111 28.99 0.00 0.00 3.86
3692 3915 2.492090 CTCGGCCGAAGTCTCTGG 59.508 66.667 30.53 11.08 0.00 3.86
3693 3916 2.202676 GCTCGGCCGAAGTCTCTG 60.203 66.667 30.53 16.60 0.00 3.35
3694 3917 3.816524 CGCTCGGCCGAAGTCTCT 61.817 66.667 30.53 0.00 0.00 3.10
3695 3918 2.814183 TTTCGCTCGGCCGAAGTCTC 62.814 60.000 30.53 14.20 46.41 3.36
3696 3919 2.927580 TTTCGCTCGGCCGAAGTCT 61.928 57.895 30.53 0.00 46.41 3.24
3697 3920 2.431942 TTTCGCTCGGCCGAAGTC 60.432 61.111 30.53 19.18 46.41 3.01
3698 3921 2.737376 GTTTCGCTCGGCCGAAGT 60.737 61.111 30.53 0.00 46.41 3.01
3699 3922 3.488090 GGTTTCGCTCGGCCGAAG 61.488 66.667 30.53 24.85 46.41 3.79
4221 4444 3.530910 AAACCGAGGCACCTCCACG 62.531 63.158 11.09 0.29 46.50 4.94
4222 4445 1.671379 GAAACCGAGGCACCTCCAC 60.671 63.158 11.09 0.00 39.77 4.02
4223 4446 2.747686 GAAACCGAGGCACCTCCA 59.252 61.111 11.09 0.00 39.77 3.86
4224 4447 2.434359 CGAAACCGAGGCACCTCC 60.434 66.667 11.09 0.00 39.77 4.30
4225 4448 2.434359 CCGAAACCGAGGCACCTC 60.434 66.667 6.62 6.62 39.55 3.85
4279 4502 3.833645 TTCGACCAGATCCGGCCG 61.834 66.667 21.04 21.04 0.00 6.13
4280 4503 2.202892 GTTCGACCAGATCCGGCC 60.203 66.667 0.00 0.00 0.00 6.13
4281 4504 2.202892 GGTTCGACCAGATCCGGC 60.203 66.667 0.00 0.00 38.42 6.13
4282 4505 1.141881 CAGGTTCGACCAGATCCGG 59.858 63.158 0.00 0.00 41.95 5.14
4283 4506 1.141881 CCAGGTTCGACCAGATCCG 59.858 63.158 6.78 0.00 41.95 4.18
4284 4507 1.153349 GCCAGGTTCGACCAGATCC 60.153 63.158 6.78 0.00 41.95 3.36
4285 4508 1.153349 GGCCAGGTTCGACCAGATC 60.153 63.158 0.00 0.00 41.95 2.75
4286 4509 1.918293 TGGCCAGGTTCGACCAGAT 60.918 57.895 0.00 0.00 41.95 2.90
4287 4510 2.525629 TGGCCAGGTTCGACCAGA 60.526 61.111 0.00 0.00 41.95 3.86
4288 4511 2.046892 CTGGCCAGGTTCGACCAG 60.047 66.667 26.14 3.39 41.95 4.00
4289 4512 1.899437 GATCTGGCCAGGTTCGACCA 61.899 60.000 32.23 11.11 41.95 4.02
4290 4513 1.153349 GATCTGGCCAGGTTCGACC 60.153 63.158 32.23 9.56 38.99 4.79
4291 4514 1.153349 GGATCTGGCCAGGTTCGAC 60.153 63.158 32.23 13.46 0.00 4.20
4292 4515 2.721167 CGGATCTGGCCAGGTTCGA 61.721 63.158 38.96 17.74 43.09 3.71
4293 4516 2.202932 CGGATCTGGCCAGGTTCG 60.203 66.667 31.66 31.66 33.77 3.95
4294 4517 1.450312 CACGGATCTGGCCAGGTTC 60.450 63.158 32.23 24.30 0.00 3.62
4295 4518 2.671070 CACGGATCTGGCCAGGTT 59.329 61.111 32.23 20.11 0.00 3.50
4296 4519 3.402681 CCACGGATCTGGCCAGGT 61.403 66.667 32.23 27.57 0.00 4.00
4297 4520 3.402681 ACCACGGATCTGGCCAGG 61.403 66.667 32.23 18.44 34.20 4.45
4298 4521 2.124983 CACCACGGATCTGGCCAG 60.125 66.667 27.87 27.87 34.20 4.85
4299 4522 2.927856 ACACCACGGATCTGGCCA 60.928 61.111 4.71 4.71 34.20 5.36
4300 4523 2.436646 CACACCACGGATCTGGCC 60.437 66.667 6.47 0.00 34.20 5.36
4301 4524 0.889186 AAACACACCACGGATCTGGC 60.889 55.000 6.47 0.00 34.20 4.85
4302 4525 0.874390 CAAACACACCACGGATCTGG 59.126 55.000 6.47 2.73 37.33 3.86
4303 4526 1.531149 GTCAAACACACCACGGATCTG 59.469 52.381 0.00 0.00 0.00 2.90
4304 4527 1.872237 CGTCAAACACACCACGGATCT 60.872 52.381 0.00 0.00 0.00 2.75
4305 4528 0.511221 CGTCAAACACACCACGGATC 59.489 55.000 0.00 0.00 0.00 3.36
4306 4529 1.503818 GCGTCAAACACACCACGGAT 61.504 55.000 0.00 0.00 32.79 4.18
4307 4530 2.174969 GCGTCAAACACACCACGGA 61.175 57.895 0.00 0.00 32.79 4.69
4308 4531 2.326550 GCGTCAAACACACCACGG 59.673 61.111 0.00 0.00 32.79 4.94
4309 4532 2.053465 CGCGTCAAACACACCACG 60.053 61.111 0.00 0.00 35.32 4.94
4310 4533 2.351888 GCGCGTCAAACACACCAC 60.352 61.111 8.43 0.00 0.00 4.16
4311 4534 3.931130 CGCGCGTCAAACACACCA 61.931 61.111 24.19 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.