Multiple sequence alignment - TraesCS5B01G384000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G384000 chr5B 100.000 6631 0 0 1 6631 562956004 562962634 0.000000e+00 12246.0
1 TraesCS5B01G384000 chr5B 92.308 91 4 1 2816 2903 562958774 562958864 6.980000e-25 126.0
2 TraesCS5B01G384000 chr5B 92.308 91 4 1 2771 2861 562958819 562958906 6.980000e-25 126.0
3 TraesCS5B01G384000 chr5A 93.488 4730 200 42 892 5550 577938185 577942877 0.000000e+00 6929.0
4 TraesCS5B01G384000 chr5A 82.579 442 47 18 366 802 577936444 577936860 4.890000e-96 363.0
5 TraesCS5B01G384000 chr5A 82.759 348 40 11 5548 5883 577942955 577943294 6.500000e-75 292.0
6 TraesCS5B01G384000 chr5A 92.308 91 4 1 2771 2861 577940156 577940243 6.980000e-25 126.0
7 TraesCS5B01G384000 chr5A 88.095 84 7 3 291 372 577936344 577936426 5.470000e-16 97.1
8 TraesCS5B01G384000 chr5A 93.617 47 2 1 5926 5971 577943357 577943403 1.190000e-07 69.4
9 TraesCS5B01G384000 chr5A 93.023 43 3 0 2861 2903 577940114 577940156 5.550000e-06 63.9
10 TraesCS5B01G384000 chr5A 93.023 43 3 0 2774 2816 577940201 577940243 5.550000e-06 63.9
11 TraesCS5B01G384000 chr5D 93.714 1909 93 13 3752 5648 458906084 458907977 0.000000e+00 2835.0
12 TraesCS5B01G384000 chr5D 92.135 2009 83 37 934 2903 458903074 458905046 0.000000e+00 2765.0
13 TraesCS5B01G384000 chr5D 96.338 983 18 4 2771 3753 458904959 458905923 0.000000e+00 1600.0
14 TraesCS5B01G384000 chr5D 90.108 647 36 14 6000 6630 458911078 458911712 0.000000e+00 815.0
15 TraesCS5B01G384000 chr5D 83.585 530 54 21 366 889 458901837 458902339 3.620000e-127 466.0
16 TraesCS5B01G384000 chr5D 92.308 91 4 1 2816 2903 458904914 458905004 6.980000e-25 126.0
17 TraesCS5B01G384000 chr5D 93.182 88 3 1 2774 2861 458905004 458905088 6.980000e-25 126.0
18 TraesCS5B01G384000 chr5D 88.095 84 7 3 291 372 458901737 458901819 5.470000e-16 97.1
19 TraesCS5B01G384000 chr5D 93.023 43 3 0 2774 2816 458905046 458905088 5.550000e-06 63.9
20 TraesCS5B01G384000 chr6B 84.761 794 69 27 2861 3623 660378824 660379596 0.000000e+00 749.0
21 TraesCS5B01G384000 chr6B 84.182 550 73 7 4518 5065 660379625 660380162 7.620000e-144 521.0
22 TraesCS5B01G384000 chr7B 83.985 793 70 23 2861 3623 658201207 658200442 0.000000e+00 708.0
23 TraesCS5B01G384000 chr7B 84.278 547 72 7 4521 5065 658200414 658199880 7.620000e-144 521.0
24 TraesCS5B01G384000 chr7B 84.687 431 54 6 5072 5502 658199559 658199141 2.860000e-113 420.0
25 TraesCS5B01G384000 chr7B 90.000 280 25 2 2539 2816 658201441 658201163 6.320000e-95 359.0
26 TraesCS5B01G384000 chr3D 79.364 1163 104 49 208 1342 16162292 16163346 0.000000e+00 693.0
27 TraesCS5B01G384000 chr3D 81.087 460 37 12 208 633 16167897 16168340 8.300000e-84 322.0
28 TraesCS5B01G384000 chr7A 80.567 705 117 13 4702 5397 40389093 40388400 5.890000e-145 525.0
29 TraesCS5B01G384000 chr3A 82.412 597 75 14 208 798 20228000 20227428 1.660000e-135 494.0
30 TraesCS5B01G384000 chr3A 78.973 837 88 47 208 1004 20216382 20215594 2.150000e-134 490.0
31 TraesCS5B01G384000 chr3A 80.543 442 22 21 921 1342 20227379 20226982 1.410000e-71 281.0
32 TraesCS5B01G384000 chr7D 80.030 666 119 8 4720 5380 40850686 40850030 1.290000e-131 481.0
33 TraesCS5B01G384000 chr7D 77.372 411 67 16 4135 4533 40851164 40850768 3.110000e-53 220.0
34 TraesCS5B01G384000 chr4D 79.358 218 34 7 4708 4922 449827857 449827648 6.930000e-30 143.0
35 TraesCS5B01G384000 chr3B 83.333 174 10 13 1040 1196 23703408 23703579 6.930000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G384000 chr5B 562956004 562962634 6630 False 4166.000000 12246 94.872000 1 6631 3 chr5B.!!$F1 6630
1 TraesCS5B01G384000 chr5A 577936344 577943403 7059 False 1000.537500 6929 89.861500 291 5971 8 chr5A.!!$F1 5680
2 TraesCS5B01G384000 chr5D 458901737 458911712 9975 False 988.222222 2835 91.387556 291 6630 9 chr5D.!!$F1 6339
3 TraesCS5B01G384000 chr6B 660378824 660380162 1338 False 635.000000 749 84.471500 2861 5065 2 chr6B.!!$F1 2204
4 TraesCS5B01G384000 chr7B 658199141 658201441 2300 True 502.000000 708 85.737500 2539 5502 4 chr7B.!!$R1 2963
5 TraesCS5B01G384000 chr3D 16162292 16163346 1054 False 693.000000 693 79.364000 208 1342 1 chr3D.!!$F1 1134
6 TraesCS5B01G384000 chr7A 40388400 40389093 693 True 525.000000 525 80.567000 4702 5397 1 chr7A.!!$R1 695
7 TraesCS5B01G384000 chr3A 20215594 20216382 788 True 490.000000 490 78.973000 208 1004 1 chr3A.!!$R1 796
8 TraesCS5B01G384000 chr3A 20226982 20228000 1018 True 387.500000 494 81.477500 208 1342 2 chr3A.!!$R2 1134
9 TraesCS5B01G384000 chr7D 40850030 40851164 1134 True 350.500000 481 78.701000 4135 5380 2 chr7D.!!$R1 1245

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 199 0.032540 AGTTCGTTAACCGGCGTCTT 59.967 50.0 6.01 0.0 36.15 3.01 F
1088 3095 0.105408 ACAAAACACCGTACGCCTCT 59.895 50.0 10.49 0.0 0.00 3.69 F
2119 4173 0.106519 ACAATGGCAGTGGCTATCCC 60.107 55.0 19.96 0.0 40.74 3.85 F
2269 4323 0.320683 TTGAGGAGGTGTGTGCATCG 60.321 55.0 0.00 0.0 0.00 3.84 F
2421 4475 0.324275 TTGCCCCTTCTTATGCCCAC 60.324 55.0 0.00 0.0 0.00 4.61 F
3129 5233 2.751806 GCCTCTCCAACATTTCCTTGAG 59.248 50.0 0.00 0.0 0.00 3.02 F
4674 6991 0.598065 ATGGTTTTCGTTGCAGCTCC 59.402 50.0 0.00 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1679 3711 0.034896 ACCCTACTGACCAAAGCACG 59.965 55.000 0.00 0.0 0.00 5.34 R
2421 4475 0.550914 TACCCCTAATGGCCTGCAAG 59.449 55.000 3.32 0.0 0.00 4.01 R
3129 5233 2.584791 CACACGCTTGGTTGCTAATTC 58.415 47.619 0.00 0.0 0.00 2.17 R
3931 6229 2.618241 TGATCATTTTAGCGGTGGATGC 59.382 45.455 0.00 0.0 0.00 3.91 R
4386 6700 1.789506 AACAGCGCTCTTTCTGAGTC 58.210 50.000 7.13 0.0 44.41 3.36 R
4859 7177 2.024414 GCCTCTGTTGTTTGACCAAGT 58.976 47.619 0.00 0.0 0.00 3.16 R
5642 8369 0.118144 AGGAAGAAGAGACCCCTGCT 59.882 55.000 0.00 0.0 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.645884 CTTGAAAAGGTGGACATGCTTG 58.354 45.455 0.00 0.00 41.27 4.01
28 29 1.962807 TGAAAAGGTGGACATGCTTGG 59.037 47.619 4.44 0.00 0.00 3.61
29 30 0.681175 AAAAGGTGGACATGCTTGGC 59.319 50.000 4.44 0.00 0.00 4.52
30 31 0.178953 AAAGGTGGACATGCTTGGCT 60.179 50.000 5.29 0.00 0.00 4.75
31 32 0.610232 AAGGTGGACATGCTTGGCTC 60.610 55.000 5.29 0.00 0.00 4.70
32 33 1.303561 GGTGGACATGCTTGGCTCA 60.304 57.895 5.29 0.00 0.00 4.26
33 34 0.895100 GGTGGACATGCTTGGCTCAA 60.895 55.000 5.29 0.00 0.00 3.02
34 35 0.242017 GTGGACATGCTTGGCTCAAC 59.758 55.000 5.29 0.00 0.00 3.18
35 36 0.178995 TGGACATGCTTGGCTCAACA 60.179 50.000 5.29 0.00 0.00 3.33
36 37 0.961019 GGACATGCTTGGCTCAACAA 59.039 50.000 5.29 0.00 0.00 2.83
37 38 1.340889 GGACATGCTTGGCTCAACAAA 59.659 47.619 5.29 0.00 0.00 2.83
38 39 2.224018 GGACATGCTTGGCTCAACAAAA 60.224 45.455 5.29 0.00 0.00 2.44
39 40 3.555586 GGACATGCTTGGCTCAACAAAAT 60.556 43.478 5.29 0.00 0.00 1.82
40 41 4.321899 GGACATGCTTGGCTCAACAAAATA 60.322 41.667 5.29 0.00 0.00 1.40
41 42 5.212532 ACATGCTTGGCTCAACAAAATAA 57.787 34.783 4.44 0.00 0.00 1.40
42 43 5.609423 ACATGCTTGGCTCAACAAAATAAA 58.391 33.333 4.44 0.00 0.00 1.40
43 44 6.054295 ACATGCTTGGCTCAACAAAATAAAA 58.946 32.000 4.44 0.00 0.00 1.52
44 45 6.711645 ACATGCTTGGCTCAACAAAATAAAAT 59.288 30.769 4.44 0.00 0.00 1.82
45 46 7.229106 ACATGCTTGGCTCAACAAAATAAAATT 59.771 29.630 4.44 0.00 0.00 1.82
46 47 6.957150 TGCTTGGCTCAACAAAATAAAATTG 58.043 32.000 0.00 0.00 0.00 2.32
47 48 6.541641 TGCTTGGCTCAACAAAATAAAATTGT 59.458 30.769 0.00 0.00 42.56 2.71
49 50 7.587392 GCTTGGCTCAACAAAATAAAATTGTTC 59.413 33.333 1.92 0.00 45.27 3.18
50 51 7.171447 TGGCTCAACAAAATAAAATTGTTCG 57.829 32.000 1.92 0.00 45.27 3.95
51 52 6.201806 TGGCTCAACAAAATAAAATTGTTCGG 59.798 34.615 1.92 0.70 45.27 4.30
52 53 6.201997 GGCTCAACAAAATAAAATTGTTCGGT 59.798 34.615 1.92 0.00 45.27 4.69
53 54 7.254624 GGCTCAACAAAATAAAATTGTTCGGTT 60.255 33.333 1.92 0.00 45.27 4.44
54 55 7.582319 GCTCAACAAAATAAAATTGTTCGGTTG 59.418 33.333 1.92 0.00 45.27 3.77
55 56 7.910304 TCAACAAAATAAAATTGTTCGGTTGG 58.090 30.769 13.82 0.00 45.27 3.77
56 57 7.764443 TCAACAAAATAAAATTGTTCGGTTGGA 59.236 29.630 13.82 0.00 45.27 3.53
57 58 8.555361 CAACAAAATAAAATTGTTCGGTTGGAT 58.445 29.630 1.92 0.00 45.27 3.41
58 59 8.305441 ACAAAATAAAATTGTTCGGTTGGATC 57.695 30.769 0.00 0.00 37.74 3.36
59 60 7.928706 ACAAAATAAAATTGTTCGGTTGGATCA 59.071 29.630 0.00 0.00 37.74 2.92
60 61 8.434661 CAAAATAAAATTGTTCGGTTGGATCAG 58.565 33.333 0.00 0.00 0.00 2.90
61 62 6.834168 ATAAAATTGTTCGGTTGGATCAGT 57.166 33.333 0.00 0.00 0.00 3.41
62 63 5.529581 AAAATTGTTCGGTTGGATCAGTT 57.470 34.783 0.00 0.00 0.00 3.16
63 64 5.529581 AAATTGTTCGGTTGGATCAGTTT 57.470 34.783 0.00 0.00 32.58 2.66
64 65 3.980646 TTGTTCGGTTGGATCAGTTTG 57.019 42.857 0.00 0.00 0.00 2.93
65 66 2.925724 TGTTCGGTTGGATCAGTTTGT 58.074 42.857 0.00 0.00 0.00 2.83
66 67 3.283751 TGTTCGGTTGGATCAGTTTGTT 58.716 40.909 0.00 0.00 0.00 2.83
67 68 3.066064 TGTTCGGTTGGATCAGTTTGTTG 59.934 43.478 0.00 0.00 0.00 3.33
68 69 3.201353 TCGGTTGGATCAGTTTGTTGA 57.799 42.857 0.00 0.00 0.00 3.18
69 70 3.750371 TCGGTTGGATCAGTTTGTTGAT 58.250 40.909 0.00 0.00 40.40 2.57
70 71 4.141287 TCGGTTGGATCAGTTTGTTGATT 58.859 39.130 0.00 0.00 37.90 2.57
71 72 4.023279 TCGGTTGGATCAGTTTGTTGATTG 60.023 41.667 0.00 0.00 37.90 2.67
72 73 4.023279 CGGTTGGATCAGTTTGTTGATTGA 60.023 41.667 0.00 0.00 37.90 2.57
73 74 5.335897 CGGTTGGATCAGTTTGTTGATTGAT 60.336 40.000 0.00 0.00 37.90 2.57
74 75 6.095377 GGTTGGATCAGTTTGTTGATTGATC 58.905 40.000 0.00 5.07 43.17 2.92
78 79 6.129053 GATCAGTTTGTTGATTGATCCCTC 57.871 41.667 2.69 0.00 39.83 4.30
79 80 4.002982 TCAGTTTGTTGATTGATCCCTCG 58.997 43.478 0.00 0.00 0.00 4.63
80 81 3.753272 CAGTTTGTTGATTGATCCCTCGT 59.247 43.478 0.00 0.00 0.00 4.18
81 82 3.753272 AGTTTGTTGATTGATCCCTCGTG 59.247 43.478 0.00 0.00 0.00 4.35
82 83 1.737838 TGTTGATTGATCCCTCGTGC 58.262 50.000 0.00 0.00 0.00 5.34
83 84 1.003003 TGTTGATTGATCCCTCGTGCA 59.997 47.619 0.00 0.00 0.00 4.57
84 85 2.083774 GTTGATTGATCCCTCGTGCAA 58.916 47.619 0.00 0.00 0.00 4.08
85 86 2.487762 GTTGATTGATCCCTCGTGCAAA 59.512 45.455 0.00 0.00 0.00 3.68
86 87 2.083774 TGATTGATCCCTCGTGCAAAC 58.916 47.619 0.00 0.00 0.00 2.93
87 88 1.062587 GATTGATCCCTCGTGCAAACG 59.937 52.381 0.00 0.00 0.00 3.60
88 89 0.953471 TTGATCCCTCGTGCAAACGG 60.953 55.000 0.00 0.00 0.00 4.44
89 90 2.046314 ATCCCTCGTGCAAACGGG 60.046 61.111 8.74 8.74 38.07 5.28
90 91 2.798148 GATCCCTCGTGCAAACGGGT 62.798 60.000 13.40 3.71 37.92 5.28
91 92 3.353836 CCCTCGTGCAAACGGGTG 61.354 66.667 7.18 0.00 31.89 4.61
92 93 3.353836 CCTCGTGCAAACGGGTGG 61.354 66.667 0.00 0.00 0.00 4.61
93 94 3.353836 CTCGTGCAAACGGGTGGG 61.354 66.667 0.00 0.00 0.00 4.61
94 95 3.818121 CTCGTGCAAACGGGTGGGA 62.818 63.158 0.00 0.00 0.00 4.37
95 96 2.902846 CGTGCAAACGGGTGGGAA 60.903 61.111 0.00 0.00 0.00 3.97
96 97 2.482333 CGTGCAAACGGGTGGGAAA 61.482 57.895 0.00 0.00 0.00 3.13
97 98 1.801309 CGTGCAAACGGGTGGGAAAT 61.801 55.000 0.00 0.00 0.00 2.17
98 99 0.391228 GTGCAAACGGGTGGGAAATT 59.609 50.000 0.00 0.00 0.00 1.82
99 100 1.614413 GTGCAAACGGGTGGGAAATTA 59.386 47.619 0.00 0.00 0.00 1.40
100 101 2.232696 GTGCAAACGGGTGGGAAATTAT 59.767 45.455 0.00 0.00 0.00 1.28
101 102 2.900546 TGCAAACGGGTGGGAAATTATT 59.099 40.909 0.00 0.00 0.00 1.40
102 103 3.258228 GCAAACGGGTGGGAAATTATTG 58.742 45.455 0.00 0.00 0.00 1.90
103 104 3.258228 CAAACGGGTGGGAAATTATTGC 58.742 45.455 0.00 0.00 0.00 3.56
104 105 2.525105 ACGGGTGGGAAATTATTGCT 57.475 45.000 0.00 0.00 0.00 3.91
105 106 3.655615 ACGGGTGGGAAATTATTGCTA 57.344 42.857 0.00 0.00 0.00 3.49
106 107 3.970842 ACGGGTGGGAAATTATTGCTAA 58.029 40.909 0.00 0.00 0.00 3.09
107 108 4.345854 ACGGGTGGGAAATTATTGCTAAA 58.654 39.130 0.00 0.00 0.00 1.85
108 109 4.773149 ACGGGTGGGAAATTATTGCTAAAA 59.227 37.500 0.00 0.00 0.00 1.52
109 110 5.105513 ACGGGTGGGAAATTATTGCTAAAAG 60.106 40.000 0.00 0.00 0.00 2.27
110 111 5.105513 CGGGTGGGAAATTATTGCTAAAAGT 60.106 40.000 0.00 0.00 0.00 2.66
111 112 6.106003 GGGTGGGAAATTATTGCTAAAAGTG 58.894 40.000 0.00 0.00 0.00 3.16
112 113 6.295632 GGGTGGGAAATTATTGCTAAAAGTGT 60.296 38.462 0.00 0.00 0.00 3.55
113 114 7.093684 GGGTGGGAAATTATTGCTAAAAGTGTA 60.094 37.037 0.00 0.00 0.00 2.90
114 115 7.758076 GGTGGGAAATTATTGCTAAAAGTGTAC 59.242 37.037 0.00 0.00 0.00 2.90
115 116 8.301002 GTGGGAAATTATTGCTAAAAGTGTACA 58.699 33.333 0.00 0.00 0.00 2.90
116 117 9.030452 TGGGAAATTATTGCTAAAAGTGTACAT 57.970 29.630 0.00 0.00 0.00 2.29
117 118 9.301153 GGGAAATTATTGCTAAAAGTGTACATG 57.699 33.333 0.00 0.00 0.00 3.21
118 119 9.301153 GGAAATTATTGCTAAAAGTGTACATGG 57.699 33.333 0.00 0.00 0.00 3.66
121 122 9.461312 AATTATTGCTAAAAGTGTACATGGAGA 57.539 29.630 0.00 0.00 0.00 3.71
122 123 9.632638 ATTATTGCTAAAAGTGTACATGGAGAT 57.367 29.630 0.00 0.00 0.00 2.75
123 124 6.985188 TTGCTAAAAGTGTACATGGAGATC 57.015 37.500 0.00 0.00 0.00 2.75
124 125 6.048732 TGCTAAAAGTGTACATGGAGATCA 57.951 37.500 0.00 0.00 0.00 2.92
125 126 6.653020 TGCTAAAAGTGTACATGGAGATCAT 58.347 36.000 0.00 0.00 36.31 2.45
140 141 8.661752 ATGGAGATCATGATACAGTATTCTGA 57.338 34.615 8.54 7.93 38.04 3.27
141 142 8.482852 TGGAGATCATGATACAGTATTCTGAA 57.517 34.615 8.54 0.00 43.76 3.02
142 143 8.927411 TGGAGATCATGATACAGTATTCTGAAA 58.073 33.333 8.54 0.00 43.76 2.69
143 144 9.770097 GGAGATCATGATACAGTATTCTGAAAA 57.230 33.333 8.54 0.00 43.76 2.29
148 149 9.399797 TCATGATACAGTATTCTGAAAAATGCT 57.600 29.630 6.32 0.00 43.76 3.79
151 152 9.844790 TGATACAGTATTCTGAAAAATGCTTTG 57.155 29.630 6.32 0.00 43.76 2.77
152 153 8.693542 ATACAGTATTCTGAAAAATGCTTTGC 57.306 30.769 6.32 0.00 43.76 3.68
153 154 6.514947 ACAGTATTCTGAAAAATGCTTTGCA 58.485 32.000 6.32 0.00 43.76 4.08
154 155 6.985645 ACAGTATTCTGAAAAATGCTTTGCAA 59.014 30.769 6.32 0.00 42.22 4.08
155 156 7.495279 ACAGTATTCTGAAAAATGCTTTGCAAA 59.505 29.630 12.14 12.14 42.22 3.68
156 157 8.500773 CAGTATTCTGAAAAATGCTTTGCAAAT 58.499 29.630 13.23 0.00 42.22 2.32
157 158 8.500773 AGTATTCTGAAAAATGCTTTGCAAATG 58.499 29.630 13.23 8.19 43.62 2.32
158 159 5.098218 TCTGAAAAATGCTTTGCAAATGC 57.902 34.783 13.23 17.56 46.12 3.56
159 160 4.817464 TCTGAAAAATGCTTTGCAAATGCT 59.183 33.333 24.26 13.34 46.10 3.79
160 161 5.990386 TCTGAAAAATGCTTTGCAAATGCTA 59.010 32.000 24.26 15.74 46.10 3.49
161 162 6.651643 TCTGAAAAATGCTTTGCAAATGCTAT 59.348 30.769 24.26 16.75 46.10 2.97
162 163 6.604012 TGAAAAATGCTTTGCAAATGCTATG 58.396 32.000 24.26 10.93 46.10 2.23
163 164 5.554822 AAAATGCTTTGCAAATGCTATGG 57.445 34.783 24.26 10.35 46.10 2.74
164 165 3.899052 ATGCTTTGCAAATGCTATGGT 57.101 38.095 24.26 10.28 46.10 3.55
165 166 2.962125 TGCTTTGCAAATGCTATGGTG 58.038 42.857 24.26 9.19 46.10 4.17
166 167 1.662122 GCTTTGCAAATGCTATGGTGC 59.338 47.619 13.23 5.42 42.99 5.01
167 168 2.273557 CTTTGCAAATGCTATGGTGCC 58.726 47.619 13.23 0.00 42.66 5.01
168 169 1.559368 TTGCAAATGCTATGGTGCCT 58.441 45.000 6.97 0.00 42.66 4.75
169 170 2.433662 TGCAAATGCTATGGTGCCTA 57.566 45.000 6.97 0.00 42.66 3.93
170 171 2.948115 TGCAAATGCTATGGTGCCTAT 58.052 42.857 6.97 0.00 42.66 2.57
171 172 2.886523 TGCAAATGCTATGGTGCCTATC 59.113 45.455 6.97 0.00 42.66 2.08
172 173 2.886523 GCAAATGCTATGGTGCCTATCA 59.113 45.455 0.00 0.00 38.21 2.15
173 174 3.508793 GCAAATGCTATGGTGCCTATCAT 59.491 43.478 0.00 0.00 38.21 2.45
174 175 4.701651 GCAAATGCTATGGTGCCTATCATA 59.298 41.667 0.00 0.00 38.21 2.15
175 176 5.359009 GCAAATGCTATGGTGCCTATCATAT 59.641 40.000 0.00 0.00 38.21 1.78
176 177 6.459298 GCAAATGCTATGGTGCCTATCATATC 60.459 42.308 0.00 0.00 38.21 1.63
177 178 6.572182 AATGCTATGGTGCCTATCATATCT 57.428 37.500 0.00 0.00 29.84 1.98
178 179 5.604758 TGCTATGGTGCCTATCATATCTC 57.395 43.478 0.00 0.00 29.84 2.75
179 180 5.025453 TGCTATGGTGCCTATCATATCTCA 58.975 41.667 0.00 0.00 29.84 3.27
180 181 5.128335 TGCTATGGTGCCTATCATATCTCAG 59.872 44.000 0.00 0.00 29.84 3.35
181 182 5.128499 GCTATGGTGCCTATCATATCTCAGT 59.872 44.000 0.00 0.00 29.84 3.41
182 183 6.351711 GCTATGGTGCCTATCATATCTCAGTT 60.352 42.308 0.00 0.00 29.84 3.16
183 184 5.474578 TGGTGCCTATCATATCTCAGTTC 57.525 43.478 0.00 0.00 0.00 3.01
184 185 4.021981 TGGTGCCTATCATATCTCAGTTCG 60.022 45.833 0.00 0.00 0.00 3.95
185 186 4.021894 GGTGCCTATCATATCTCAGTTCGT 60.022 45.833 0.00 0.00 0.00 3.85
186 187 5.509840 GGTGCCTATCATATCTCAGTTCGTT 60.510 44.000 0.00 0.00 0.00 3.85
187 188 6.294564 GGTGCCTATCATATCTCAGTTCGTTA 60.295 42.308 0.00 0.00 0.00 3.18
188 189 7.145985 GTGCCTATCATATCTCAGTTCGTTAA 58.854 38.462 0.00 0.00 0.00 2.01
189 190 7.115095 GTGCCTATCATATCTCAGTTCGTTAAC 59.885 40.741 0.00 0.00 35.72 2.01
190 191 6.586844 GCCTATCATATCTCAGTTCGTTAACC 59.413 42.308 0.00 0.00 36.15 2.85
191 192 6.802348 CCTATCATATCTCAGTTCGTTAACCG 59.198 42.308 0.00 0.00 36.15 4.44
192 193 4.928601 TCATATCTCAGTTCGTTAACCGG 58.071 43.478 0.00 0.00 36.15 5.28
193 194 2.005971 ATCTCAGTTCGTTAACCGGC 57.994 50.000 0.00 0.00 36.15 6.13
194 195 0.387622 TCTCAGTTCGTTAACCGGCG 60.388 55.000 0.00 0.00 36.15 6.46
195 196 0.665369 CTCAGTTCGTTAACCGGCGT 60.665 55.000 6.01 0.00 36.15 5.68
196 197 0.664166 TCAGTTCGTTAACCGGCGTC 60.664 55.000 6.01 0.00 36.15 5.19
197 198 0.665369 CAGTTCGTTAACCGGCGTCT 60.665 55.000 6.01 0.00 36.15 4.18
198 199 0.032540 AGTTCGTTAACCGGCGTCTT 59.967 50.000 6.01 0.00 36.15 3.01
199 200 0.861185 GTTCGTTAACCGGCGTCTTT 59.139 50.000 6.01 0.00 37.11 2.52
200 201 2.058057 GTTCGTTAACCGGCGTCTTTA 58.942 47.619 6.01 0.00 37.11 1.85
201 202 1.981254 TCGTTAACCGGCGTCTTTAG 58.019 50.000 6.01 0.00 37.11 1.85
202 203 0.367887 CGTTAACCGGCGTCTTTAGC 59.632 55.000 6.01 1.79 0.00 3.09
221 222 2.975489 AGCCATTATCCGGTGAAGAGAT 59.025 45.455 0.00 0.00 0.00 2.75
222 223 3.070018 GCCATTATCCGGTGAAGAGATG 58.930 50.000 0.00 0.00 0.00 2.90
234 235 2.301870 TGAAGAGATGTAAGCAACCCGT 59.698 45.455 0.00 0.00 0.00 5.28
260 261 3.431856 GACTTGTTCGGTTTGTGGTTTC 58.568 45.455 0.00 0.00 0.00 2.78
267 268 2.640826 TCGGTTTGTGGTTTCCCTAGAT 59.359 45.455 0.00 0.00 0.00 1.98
298 302 8.980143 TTACAAGATTTTGATCCGGAATTTTC 57.020 30.769 9.01 1.00 37.73 2.29
299 303 6.398095 ACAAGATTTTGATCCGGAATTTTCC 58.602 36.000 9.01 0.00 39.54 3.13
316 323 5.441709 TTTTCCCCGTGTAGAATTTGTTC 57.558 39.130 0.00 0.00 0.00 3.18
321 328 3.756434 CCCGTGTAGAATTTGTTCCACAT 59.244 43.478 0.00 0.00 0.00 3.21
480 514 3.089284 CCTACCCCTGTGATTTGGAAAC 58.911 50.000 0.00 0.00 0.00 2.78
482 516 1.219213 ACCCCTGTGATTTGGAAACCA 59.781 47.619 0.00 0.00 0.00 3.67
545 588 3.069729 ACGCTCCCCACAAGATAGATTAC 59.930 47.826 0.00 0.00 0.00 1.89
555 599 7.713507 CCCACAAGATAGATTACCAAATCGTTA 59.286 37.037 0.00 0.00 45.24 3.18
566 610 7.598189 TTACCAAATCGTTATTTCATCGTCA 57.402 32.000 0.00 0.00 32.87 4.35
578 622 4.811555 TTCATCGTCAAACAACCAGAAG 57.188 40.909 0.00 0.00 0.00 2.85
582 626 3.611970 TCGTCAAACAACCAGAAGGAAA 58.388 40.909 0.00 0.00 38.69 3.13
637 682 4.681744 TGGGAATTTCATAAAATGCTCGC 58.318 39.130 0.00 0.00 33.98 5.03
645 690 7.804614 TTTCATAAAATGCTCGCGTTTTAAT 57.195 28.000 24.42 14.56 44.98 1.40
646 691 7.804614 TTCATAAAATGCTCGCGTTTTAATT 57.195 28.000 24.42 12.37 44.98 1.40
717 763 8.575589 TGTTCAGAAATTACATAAACTGTGCAT 58.424 29.630 0.00 0.00 38.92 3.96
835 2104 3.558411 GTGCATCGGTCGCTGCTC 61.558 66.667 17.77 11.82 38.01 4.26
902 2525 1.386533 CTTGATGTCTGACATGGGCC 58.613 55.000 26.71 13.17 39.27 5.80
1080 3087 1.826487 GCTCCCCACAAAACACCGT 60.826 57.895 0.00 0.00 0.00 4.83
1085 3092 1.280444 CCACAAAACACCGTACGCC 59.720 57.895 10.49 0.00 0.00 5.68
1086 3093 1.161563 CCACAAAACACCGTACGCCT 61.162 55.000 10.49 0.00 0.00 5.52
1087 3094 0.233848 CACAAAACACCGTACGCCTC 59.766 55.000 10.49 0.00 0.00 4.70
1088 3095 0.105408 ACAAAACACCGTACGCCTCT 59.895 50.000 10.49 0.00 0.00 3.69
1090 3097 0.665369 AAAACACCGTACGCCTCTCG 60.665 55.000 10.49 0.00 45.38 4.04
1091 3098 1.518056 AAACACCGTACGCCTCTCGA 61.518 55.000 10.49 0.00 41.67 4.04
1092 3099 2.099831 CACCGTACGCCTCTCGAC 59.900 66.667 10.49 0.00 41.67 4.20
1135 3142 1.228306 CCCTCTCCGGCGAGTAGAT 60.228 63.158 19.70 0.00 37.40 1.98
1199 3211 2.018086 CTCTCCTCTCCCCTCCCCT 61.018 68.421 0.00 0.00 0.00 4.79
1200 3212 2.015726 TCTCCTCTCCCCTCCCCTC 61.016 68.421 0.00 0.00 0.00 4.30
1201 3213 3.430497 TCCTCTCCCCTCCCCTCG 61.430 72.222 0.00 0.00 0.00 4.63
1202 3214 3.756783 CCTCTCCCCTCCCCTCGT 61.757 72.222 0.00 0.00 0.00 4.18
1203 3215 2.123640 CTCTCCCCTCCCCTCGTC 60.124 72.222 0.00 0.00 0.00 4.20
1204 3216 4.124943 TCTCCCCTCCCCTCGTCG 62.125 72.222 0.00 0.00 0.00 5.12
1331 3349 0.600557 TGCGCACGGGATTTGATTTT 59.399 45.000 5.66 0.00 0.00 1.82
1332 3350 1.268265 GCGCACGGGATTTGATTTTC 58.732 50.000 0.30 0.00 0.00 2.29
1360 3382 6.879458 TGATTTTACTCCTTTCTGTAGAAGCC 59.121 38.462 0.00 0.00 35.21 4.35
1365 3387 3.248024 TCCTTTCTGTAGAAGCCAGGAA 58.752 45.455 9.88 0.00 36.29 3.36
1433 3458 2.435586 CGTGGCAGCAAGAGGAGG 60.436 66.667 0.00 0.00 0.00 4.30
1497 3522 4.803426 GCAGGTCGGACAGCTCGG 62.803 72.222 10.76 0.00 0.00 4.63
1498 3523 3.062466 CAGGTCGGACAGCTCGGA 61.062 66.667 10.76 0.00 0.00 4.55
1647 3678 6.870965 CGAATCTGATAAAGGGAGAGGTAATG 59.129 42.308 0.00 0.00 0.00 1.90
1651 3682 6.782988 TCTGATAAAGGGAGAGGTAATGGTAG 59.217 42.308 0.00 0.00 0.00 3.18
1665 3697 3.713826 ATGGTAGACGTGGTGGATTTT 57.286 42.857 0.00 0.00 0.00 1.82
1679 3711 3.057526 GTGGATTTTGTTCAGGTGTAGGC 60.058 47.826 0.00 0.00 0.00 3.93
1803 3853 5.011329 TGACGATGATGATGATGAGGATGAA 59.989 40.000 0.00 0.00 0.00 2.57
1815 3865 3.843422 TGAGGATGAAGAGGAGGAGATC 58.157 50.000 0.00 0.00 0.00 2.75
1833 3883 1.753078 CGGAGGTGACGGGATGAGA 60.753 63.158 0.00 0.00 0.00 3.27
1836 3886 1.305297 AGGTGACGGGATGAGAGCA 60.305 57.895 0.00 0.00 0.00 4.26
1977 4027 7.064253 GCTACACATGAAGAGGTAACGTTATTT 59.936 37.037 11.86 2.71 46.39 1.40
2033 4087 9.897744 TGTGTTCAGTTGATTATCTCATTTTTC 57.102 29.630 0.00 0.00 32.72 2.29
2119 4173 0.106519 ACAATGGCAGTGGCTATCCC 60.107 55.000 19.96 0.00 40.74 3.85
2161 4215 2.253452 GCCAGTCAGTTGCTTGCG 59.747 61.111 0.00 0.00 0.00 4.85
2167 4221 1.301716 TCAGTTGCTTGCGTCCTCC 60.302 57.895 0.00 0.00 0.00 4.30
2269 4323 0.320683 TTGAGGAGGTGTGTGCATCG 60.321 55.000 0.00 0.00 0.00 3.84
2421 4475 0.324275 TTGCCCCTTCTTATGCCCAC 60.324 55.000 0.00 0.00 0.00 4.61
3129 5233 2.751806 GCCTCTCCAACATTTCCTTGAG 59.248 50.000 0.00 0.00 0.00 3.02
3145 5249 3.426695 CCTTGAGAATTAGCAACCAAGCG 60.427 47.826 0.00 0.00 40.15 4.68
3146 5250 2.778299 TGAGAATTAGCAACCAAGCGT 58.222 42.857 0.00 0.00 40.15 5.07
3172 5284 6.595716 GTGCTAGGAACTCTATCAAACAATGT 59.404 38.462 0.00 0.00 41.75 2.71
3225 5345 6.760298 GGTTAACCTACAGTTTAGGATACAGC 59.240 42.308 17.83 0.53 40.05 4.40
3242 5366 4.361451 ACAGCGGCTCTATCAAATTTTG 57.639 40.909 0.00 2.59 0.00 2.44
3640 5775 5.596836 AAGACATGTTTGGTTTGTGATGT 57.403 34.783 0.00 0.00 0.00 3.06
3719 5854 4.005650 TGAAGAAGTGATGCAACCTCATC 58.994 43.478 0.00 0.00 42.33 2.92
3822 6120 8.657729 GTCATATGATGTGATTCTGCAAGATAG 58.342 37.037 9.02 0.00 46.36 2.08
3823 6121 5.943706 ATGATGTGATTCTGCAAGATAGC 57.056 39.130 0.00 0.00 46.36 2.97
4080 6382 9.786105 CTACATGTGTCATATTATGCAAAACAA 57.214 29.630 9.11 0.00 0.00 2.83
4100 6402 4.938832 ACAAAATACGCACCTGTATTGCTA 59.061 37.500 0.35 0.00 42.63 3.49
4145 6447 7.550551 TGAACAGCAGATCTCTAGTTTATTTGG 59.449 37.037 0.00 0.00 0.00 3.28
4268 6574 8.834465 TGCAAATAAAATTATGCACAACAAACT 58.166 25.926 0.00 0.00 43.32 2.66
4274 6580 7.692908 AAATTATGCACAACAAACTGTACAC 57.307 32.000 0.00 0.00 0.00 2.90
4386 6700 3.629398 GGGGCACTCAGAGACATATTTTG 59.371 47.826 3.79 0.00 0.00 2.44
4550 6866 6.007076 TGCAGGTGAGAAAATTTACCATGTA 58.993 36.000 9.89 3.52 35.66 2.29
4554 6870 8.960591 CAGGTGAGAAAATTTACCATGTATTCT 58.039 33.333 9.89 0.00 35.66 2.40
4555 6871 9.178758 AGGTGAGAAAATTTACCATGTATTCTC 57.821 33.333 9.89 7.08 40.87 2.87
4570 6886 7.012704 CCATGTATTCTCCTGGAAGTACAATTG 59.987 40.741 15.18 3.24 37.36 2.32
4585 6901 8.627208 AAGTACAATTGAGAAATCATCTGTGT 57.373 30.769 13.59 0.00 38.96 3.72
4674 6991 0.598065 ATGGTTTTCGTTGCAGCTCC 59.402 50.000 0.00 0.00 0.00 4.70
4697 7014 8.433421 TCCTATGAATTGTCCGTATTTTCTTC 57.567 34.615 0.00 0.00 0.00 2.87
4859 7177 6.206634 GTGGTTTTCATGGAGACTGTCATAAA 59.793 38.462 10.88 0.00 0.00 1.40
4959 7280 5.083533 ACTTCAAGAAGGTCAGCTATCTG 57.916 43.478 13.83 0.00 42.53 2.90
5015 7339 1.233019 CTCCTGTGCTTGTGGTTCTG 58.767 55.000 0.00 0.00 0.00 3.02
5026 7350 4.083324 GCTTGTGGTTCTGATGAAATTCGA 60.083 41.667 0.00 0.00 33.52 3.71
5030 7354 6.639563 TGTGGTTCTGATGAAATTCGATCTA 58.360 36.000 0.00 0.00 33.52 1.98
5160 7799 0.818040 ACTTCCACGTGGAGTTTGGC 60.818 55.000 34.25 0.00 46.36 4.52
5187 7826 0.872388 GTGGGTTTGTCCACGTGATC 59.128 55.000 19.30 10.00 46.31 2.92
5330 7969 0.109132 GTTGCCGGCTTCATGAAAGG 60.109 55.000 29.70 13.56 35.37 3.11
5394 8035 8.723942 AGATGTAAATACAATCTCAGGAACAC 57.276 34.615 0.00 0.00 39.99 3.32
5397 8038 8.918202 TGTAAATACAATCTCAGGAACACTTT 57.082 30.769 0.00 0.00 32.40 2.66
5398 8039 9.349713 TGTAAATACAATCTCAGGAACACTTTT 57.650 29.630 0.00 0.00 32.40 2.27
5417 8058 2.154854 TCTTTGGAAGACTCACGCAG 57.845 50.000 0.00 0.00 31.20 5.18
5428 8069 1.568612 CTCACGCAGTTTGCACCGAT 61.569 55.000 1.69 0.00 45.36 4.18
5456 8097 5.086104 TGTAGGGAAGAGATTGTACTTGC 57.914 43.478 0.00 0.00 34.57 4.01
5515 8157 6.520272 TGGTTGAAATTAACATTTGTCAGGG 58.480 36.000 0.00 0.00 32.35 4.45
5527 8169 4.471904 TTTGTCAGGGTATAGCTGTGAG 57.528 45.455 0.00 0.00 0.00 3.51
5582 8307 0.835941 ACATTAGAGGCAGCCCAGAG 59.164 55.000 8.22 0.00 0.00 3.35
5595 8320 1.386533 CCCAGAGTGCCATCATTGAC 58.613 55.000 0.00 0.00 0.00 3.18
5655 8390 2.327325 TTCAGTAGCAGGGGTCTCTT 57.673 50.000 0.00 0.00 0.00 2.85
5664 8399 0.705253 AGGGGTCTCTTCTTCCTCGA 59.295 55.000 0.00 0.00 0.00 4.04
5667 8402 1.166989 GGTCTCTTCTTCCTCGACGT 58.833 55.000 0.00 0.00 0.00 4.34
5686 8421 1.885163 TTCCGGTCGCCTTCTTCCTC 61.885 60.000 0.00 0.00 0.00 3.71
5687 8422 2.352032 CCGGTCGCCTTCTTCCTCT 61.352 63.158 0.00 0.00 0.00 3.69
5691 8426 1.135333 GGTCGCCTTCTTCCTCTACAG 59.865 57.143 0.00 0.00 0.00 2.74
5697 8432 3.037549 CCTTCTTCCTCTACAGCCTCAT 58.962 50.000 0.00 0.00 0.00 2.90
5732 8468 3.660111 ACCGGCGCTTGCTTGAAC 61.660 61.111 7.64 0.00 39.13 3.18
5733 8469 3.357079 CCGGCGCTTGCTTGAACT 61.357 61.111 7.64 0.00 39.13 3.01
5734 8470 2.127118 CGGCGCTTGCTTGAACTG 60.127 61.111 7.64 0.00 39.13 3.16
5747 8483 1.051008 TGAACTGAAGCTCTGGCAGA 58.949 50.000 17.68 17.68 41.70 4.26
5756 8492 1.022735 GCTCTGGCAGACATGAATGG 58.977 55.000 14.43 2.19 38.54 3.16
5758 8494 0.394762 TCTGGCAGACATGAATGGCC 60.395 55.000 14.43 16.57 44.82 5.36
5759 8495 3.113745 GGCAGACATGAATGGCCG 58.886 61.111 14.50 0.00 36.08 6.13
5766 8502 2.048023 CATGAATGGCCGTGGCAGT 61.048 57.895 13.76 0.00 42.43 4.40
5797 8533 3.580604 CTGCCCTGGCTCCTTGCTT 62.581 63.158 9.97 0.00 42.51 3.91
5800 8536 3.066814 CCTGGCTCCTTGCTTGGC 61.067 66.667 0.00 0.00 42.39 4.52
5801 8537 3.066814 CTGGCTCCTTGCTTGGCC 61.067 66.667 0.00 0.00 44.31 5.36
5802 8538 3.580604 CTGGCTCCTTGCTTGGCCT 62.581 63.158 3.32 0.00 44.36 5.19
5803 8539 2.753446 GGCTCCTTGCTTGGCCTC 60.753 66.667 3.32 0.00 41.20 4.70
5804 8540 2.354343 GCTCCTTGCTTGGCCTCT 59.646 61.111 3.32 0.00 38.95 3.69
5805 8541 2.045131 GCTCCTTGCTTGGCCTCTG 61.045 63.158 3.32 0.00 38.95 3.35
5806 8542 2.034687 TCCTTGCTTGGCCTCTGC 59.965 61.111 3.32 6.25 0.00 4.26
5820 8556 2.759973 CTGCCCTCTGCCGGACTA 60.760 66.667 5.05 0.00 40.16 2.59
5829 8565 2.356553 GCCGGACTAACACGCACA 60.357 61.111 5.05 0.00 0.00 4.57
5901 8676 2.962786 TTCGAACGCACCCACACG 60.963 61.111 0.00 0.00 0.00 4.49
5906 8681 4.927782 ACGCACCCACACGCACAT 62.928 61.111 0.00 0.00 0.00 3.21
5919 8694 2.938253 CACATGCGTGCACGAACT 59.062 55.556 41.19 21.69 43.02 3.01
5987 8769 2.750712 CAGCATGGTTGATGATCACACA 59.249 45.455 0.00 0.00 41.87 3.72
5988 8770 3.014623 AGCATGGTTGATGATCACACAG 58.985 45.455 0.00 0.00 33.31 3.66
5989 8771 2.751259 GCATGGTTGATGATCACACAGT 59.249 45.455 0.00 0.00 33.31 3.55
5990 8772 3.181503 GCATGGTTGATGATCACACAGTC 60.182 47.826 0.00 0.00 33.31 3.51
5991 8773 3.767902 TGGTTGATGATCACACAGTCA 57.232 42.857 0.00 0.00 0.00 3.41
5992 8774 4.290711 TGGTTGATGATCACACAGTCAT 57.709 40.909 0.00 0.00 37.76 3.06
5997 8779 3.464907 GATGATCACACAGTCATCAGGG 58.535 50.000 0.00 0.00 46.27 4.45
5998 8780 1.556451 TGATCACACAGTCATCAGGGG 59.444 52.381 0.00 0.00 0.00 4.79
6001 11707 1.203174 TCACACAGTCATCAGGGGAGA 60.203 52.381 0.00 0.00 0.00 3.71
6015 11721 1.613925 GGGGAGAAGGTTGCTTTTGTC 59.386 52.381 0.00 0.00 0.00 3.18
6017 11723 1.947456 GGAGAAGGTTGCTTTTGTCGT 59.053 47.619 0.00 0.00 0.00 4.34
6030 11736 4.614535 GCTTTTGTCGTCGGTAAGTCTAGA 60.615 45.833 0.00 0.00 0.00 2.43
6053 11761 1.410882 CGCCCCTTCTCTTCTCCTAAG 59.589 57.143 0.00 0.00 0.00 2.18
6096 11804 8.739972 TGACTCCTCTTTTATATTTTCTTTGGC 58.260 33.333 0.00 0.00 0.00 4.52
6097 11805 8.650143 ACTCCTCTTTTATATTTTCTTTGGCA 57.350 30.769 0.00 0.00 0.00 4.92
6098 11806 8.743714 ACTCCTCTTTTATATTTTCTTTGGCAG 58.256 33.333 0.00 0.00 0.00 4.85
6099 11807 8.877864 TCCTCTTTTATATTTTCTTTGGCAGA 57.122 30.769 0.00 0.00 0.00 4.26
6100 11808 9.308000 TCCTCTTTTATATTTTCTTTGGCAGAA 57.692 29.630 0.00 0.00 39.99 3.02
6110 11819 0.482446 TTTGGCAGAATGTGAGGGGT 59.518 50.000 0.00 0.00 39.31 4.95
6120 11829 2.044793 TGTGAGGGGTGAAGGAGAAT 57.955 50.000 0.00 0.00 0.00 2.40
6139 11848 4.895297 AGAATTTGATCTTTGGGTGTGTGT 59.105 37.500 0.00 0.00 0.00 3.72
6141 11850 1.979855 TGATCTTTGGGTGTGTGTGG 58.020 50.000 0.00 0.00 0.00 4.17
6143 11852 0.178964 ATCTTTGGGTGTGTGTGGGG 60.179 55.000 0.00 0.00 0.00 4.96
6145 11854 2.291402 CTTTGGGTGTGTGTGGGGGA 62.291 60.000 0.00 0.00 0.00 4.81
6147 11856 3.966543 GGGTGTGTGTGGGGGAGG 61.967 72.222 0.00 0.00 0.00 4.30
6148 11857 2.852075 GGTGTGTGTGGGGGAGGA 60.852 66.667 0.00 0.00 0.00 3.71
6259 11968 7.064966 CCAAAAATCATGTTTTCTCATTAGCCC 59.935 37.037 2.31 0.00 0.00 5.19
6290 11999 1.811428 CGACATGTTCGTCTACCTCG 58.189 55.000 0.00 0.00 43.24 4.63
6291 12000 1.395954 CGACATGTTCGTCTACCTCGA 59.604 52.381 0.00 0.00 43.24 4.04
6306 12015 1.734465 CCTCGAACATCAGCAAAGGAC 59.266 52.381 0.00 0.00 0.00 3.85
6310 12019 2.489329 CGAACATCAGCAAAGGACCATT 59.511 45.455 0.00 0.00 0.00 3.16
6331 12040 0.951558 GGAGTTTGTCCACGCAACAT 59.048 50.000 0.00 0.00 46.10 2.71
6393 12102 3.218453 TGGTGTCGGATTTGAACATTGT 58.782 40.909 0.00 0.00 0.00 2.71
6404 12113 2.794103 TGAACATTGTAGCATGCAGGT 58.206 42.857 21.98 3.53 27.68 4.00
6435 12144 6.238759 GCGACTATTCCTTTAATTGGCAATCT 60.239 38.462 14.04 6.66 28.52 2.40
6449 12158 3.572255 TGGCAATCTTTCACCCTTGTAAC 59.428 43.478 0.00 0.00 0.00 2.50
6460 12169 5.472148 TCACCCTTGTAACGTATACACTTG 58.528 41.667 3.32 5.90 0.00 3.16
6469 12178 7.600960 TGTAACGTATACACTTGTCATAACCA 58.399 34.615 3.32 0.00 0.00 3.67
6495 12204 6.105333 AGCAAAACAAGAAGTGCATGTAAAA 58.895 32.000 0.00 0.00 39.50 1.52
6509 12218 6.421801 GTGCATGTAAAACTTTGCTCTTTCAT 59.578 34.615 0.00 0.00 0.00 2.57
6527 12236 6.945435 TCTTTCATGGTTATGCTTTGGTCTTA 59.055 34.615 0.00 0.00 34.21 2.10
6530 12239 5.414454 TCATGGTTATGCTTTGGTCTTACAC 59.586 40.000 0.00 0.00 34.21 2.90
6547 12256 5.486063 TCTTACACTACCTAGCCAAATTGGA 59.514 40.000 17.47 0.00 40.96 3.53
6567 12277 4.100963 TGGAGTTCTCTTTGCTGTGAGTTA 59.899 41.667 0.00 0.00 0.00 2.24
6569 12279 5.527582 GGAGTTCTCTTTGCTGTGAGTTAAA 59.472 40.000 0.00 0.00 0.00 1.52
6585 12295 6.761242 GTGAGTTAAAGGACCTTTGCAAAAAT 59.239 34.615 26.72 13.65 35.21 1.82
6630 12351 9.839817 AAGAAAAGGAGAATTATAAGCCTAGTC 57.160 33.333 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.481128 TCCACCTTTTCAAGTCCCCC 59.519 55.000 0.00 0.00 0.00 5.40
1 2 1.133606 TGTCCACCTTTTCAAGTCCCC 60.134 52.381 0.00 0.00 0.00 4.81
2 3 2.358322 TGTCCACCTTTTCAAGTCCC 57.642 50.000 0.00 0.00 0.00 4.46
3 4 2.029918 GCATGTCCACCTTTTCAAGTCC 60.030 50.000 0.00 0.00 0.00 3.85
4 5 2.887152 AGCATGTCCACCTTTTCAAGTC 59.113 45.455 0.00 0.00 0.00 3.01
5 6 2.949447 AGCATGTCCACCTTTTCAAGT 58.051 42.857 0.00 0.00 0.00 3.16
6 7 3.553508 CCAAGCATGTCCACCTTTTCAAG 60.554 47.826 0.00 0.00 0.00 3.02
7 8 2.364970 CCAAGCATGTCCACCTTTTCAA 59.635 45.455 0.00 0.00 0.00 2.69
8 9 1.962807 CCAAGCATGTCCACCTTTTCA 59.037 47.619 0.00 0.00 0.00 2.69
9 10 1.337167 GCCAAGCATGTCCACCTTTTC 60.337 52.381 0.00 0.00 0.00 2.29
10 11 0.681175 GCCAAGCATGTCCACCTTTT 59.319 50.000 0.00 0.00 0.00 2.27
11 12 0.178953 AGCCAAGCATGTCCACCTTT 60.179 50.000 0.00 0.00 0.00 3.11
12 13 0.610232 GAGCCAAGCATGTCCACCTT 60.610 55.000 0.00 0.00 0.00 3.50
13 14 1.001641 GAGCCAAGCATGTCCACCT 60.002 57.895 0.00 0.00 0.00 4.00
14 15 0.895100 TTGAGCCAAGCATGTCCACC 60.895 55.000 0.00 0.00 0.00 4.61
15 16 0.242017 GTTGAGCCAAGCATGTCCAC 59.758 55.000 0.00 0.00 0.00 4.02
16 17 0.178995 TGTTGAGCCAAGCATGTCCA 60.179 50.000 0.00 0.00 0.00 4.02
17 18 0.961019 TTGTTGAGCCAAGCATGTCC 59.039 50.000 0.00 0.00 0.00 4.02
18 19 2.798976 TTTGTTGAGCCAAGCATGTC 57.201 45.000 0.00 0.00 0.00 3.06
19 20 3.756933 ATTTTGTTGAGCCAAGCATGT 57.243 38.095 0.00 0.00 0.00 3.21
20 21 6.542574 TTTTATTTTGTTGAGCCAAGCATG 57.457 33.333 0.00 0.00 0.00 4.06
21 22 7.229106 ACAATTTTATTTTGTTGAGCCAAGCAT 59.771 29.630 0.00 0.00 33.64 3.79
22 23 6.541641 ACAATTTTATTTTGTTGAGCCAAGCA 59.458 30.769 0.00 0.00 33.64 3.91
23 24 6.958255 ACAATTTTATTTTGTTGAGCCAAGC 58.042 32.000 0.00 0.00 33.64 4.01
24 25 7.793427 CGAACAATTTTATTTTGTTGAGCCAAG 59.207 33.333 6.53 0.00 44.90 3.61
25 26 7.254590 CCGAACAATTTTATTTTGTTGAGCCAA 60.255 33.333 6.53 0.00 44.90 4.52
26 27 6.201806 CCGAACAATTTTATTTTGTTGAGCCA 59.798 34.615 6.53 0.00 44.90 4.75
27 28 6.201997 ACCGAACAATTTTATTTTGTTGAGCC 59.798 34.615 6.53 0.00 44.90 4.70
28 29 7.172654 ACCGAACAATTTTATTTTGTTGAGC 57.827 32.000 6.53 0.00 44.90 4.26
29 30 8.061268 CCAACCGAACAATTTTATTTTGTTGAG 58.939 33.333 6.53 1.35 44.90 3.02
30 31 7.764443 TCCAACCGAACAATTTTATTTTGTTGA 59.236 29.630 6.53 0.00 44.90 3.18
31 32 7.910304 TCCAACCGAACAATTTTATTTTGTTG 58.090 30.769 6.53 0.00 44.90 3.33
32 33 8.669946 ATCCAACCGAACAATTTTATTTTGTT 57.330 26.923 1.72 1.72 46.89 2.83
33 34 7.928706 TGATCCAACCGAACAATTTTATTTTGT 59.071 29.630 0.00 0.00 38.91 2.83
34 35 8.304202 TGATCCAACCGAACAATTTTATTTTG 57.696 30.769 0.00 0.00 0.00 2.44
35 36 8.147704 ACTGATCCAACCGAACAATTTTATTTT 58.852 29.630 0.00 0.00 0.00 1.82
36 37 7.666623 ACTGATCCAACCGAACAATTTTATTT 58.333 30.769 0.00 0.00 0.00 1.40
37 38 7.227049 ACTGATCCAACCGAACAATTTTATT 57.773 32.000 0.00 0.00 0.00 1.40
38 39 6.834168 ACTGATCCAACCGAACAATTTTAT 57.166 33.333 0.00 0.00 0.00 1.40
39 40 6.642707 AACTGATCCAACCGAACAATTTTA 57.357 33.333 0.00 0.00 0.00 1.52
40 41 5.529581 AACTGATCCAACCGAACAATTTT 57.470 34.783 0.00 0.00 0.00 1.82
41 42 5.163457 ACAAACTGATCCAACCGAACAATTT 60.163 36.000 0.00 0.00 0.00 1.82
42 43 4.340950 ACAAACTGATCCAACCGAACAATT 59.659 37.500 0.00 0.00 0.00 2.32
43 44 3.888930 ACAAACTGATCCAACCGAACAAT 59.111 39.130 0.00 0.00 0.00 2.71
44 45 3.283751 ACAAACTGATCCAACCGAACAA 58.716 40.909 0.00 0.00 0.00 2.83
45 46 2.925724 ACAAACTGATCCAACCGAACA 58.074 42.857 0.00 0.00 0.00 3.18
46 47 3.314080 TCAACAAACTGATCCAACCGAAC 59.686 43.478 0.00 0.00 0.00 3.95
47 48 3.546724 TCAACAAACTGATCCAACCGAA 58.453 40.909 0.00 0.00 0.00 4.30
48 49 3.201353 TCAACAAACTGATCCAACCGA 57.799 42.857 0.00 0.00 0.00 4.69
49 50 4.023279 TCAATCAACAAACTGATCCAACCG 60.023 41.667 0.00 0.00 34.90 4.44
50 51 5.452078 TCAATCAACAAACTGATCCAACC 57.548 39.130 0.00 0.00 34.90 3.77
55 56 5.220739 CGAGGGATCAATCAACAAACTGATC 60.221 44.000 0.00 2.92 42.21 2.92
56 57 4.637534 CGAGGGATCAATCAACAAACTGAT 59.362 41.667 0.00 0.00 37.66 2.90
57 58 4.002982 CGAGGGATCAATCAACAAACTGA 58.997 43.478 0.00 0.00 0.00 3.41
58 59 3.753272 ACGAGGGATCAATCAACAAACTG 59.247 43.478 0.00 0.00 0.00 3.16
59 60 3.753272 CACGAGGGATCAATCAACAAACT 59.247 43.478 0.00 0.00 0.00 2.66
60 61 3.670627 GCACGAGGGATCAATCAACAAAC 60.671 47.826 0.00 0.00 0.00 2.93
61 62 2.487762 GCACGAGGGATCAATCAACAAA 59.512 45.455 0.00 0.00 0.00 2.83
62 63 2.083774 GCACGAGGGATCAATCAACAA 58.916 47.619 0.00 0.00 0.00 2.83
63 64 1.003003 TGCACGAGGGATCAATCAACA 59.997 47.619 0.00 0.00 0.00 3.33
64 65 1.737838 TGCACGAGGGATCAATCAAC 58.262 50.000 0.00 0.00 0.00 3.18
65 66 2.487762 GTTTGCACGAGGGATCAATCAA 59.512 45.455 0.00 0.00 0.00 2.57
66 67 2.083774 GTTTGCACGAGGGATCAATCA 58.916 47.619 0.00 0.00 0.00 2.57
67 68 2.832672 GTTTGCACGAGGGATCAATC 57.167 50.000 0.00 0.00 0.00 2.67
78 79 1.801309 ATTTCCCACCCGTTTGCACG 61.801 55.000 0.00 0.00 46.71 5.34
79 80 0.391228 AATTTCCCACCCGTTTGCAC 59.609 50.000 0.00 0.00 0.00 4.57
80 81 1.996798 TAATTTCCCACCCGTTTGCA 58.003 45.000 0.00 0.00 0.00 4.08
81 82 3.258228 CAATAATTTCCCACCCGTTTGC 58.742 45.455 0.00 0.00 0.00 3.68
82 83 3.056179 AGCAATAATTTCCCACCCGTTTG 60.056 43.478 0.00 0.00 0.00 2.93
83 84 3.169908 AGCAATAATTTCCCACCCGTTT 58.830 40.909 0.00 0.00 0.00 3.60
84 85 2.815158 AGCAATAATTTCCCACCCGTT 58.185 42.857 0.00 0.00 0.00 4.44
85 86 2.525105 AGCAATAATTTCCCACCCGT 57.475 45.000 0.00 0.00 0.00 5.28
86 87 4.993029 TTTAGCAATAATTTCCCACCCG 57.007 40.909 0.00 0.00 0.00 5.28
87 88 6.106003 CACTTTTAGCAATAATTTCCCACCC 58.894 40.000 0.00 0.00 0.00 4.61
88 89 6.697395 ACACTTTTAGCAATAATTTCCCACC 58.303 36.000 0.00 0.00 0.00 4.61
89 90 8.301002 TGTACACTTTTAGCAATAATTTCCCAC 58.699 33.333 0.00 0.00 0.00 4.61
90 91 8.410673 TGTACACTTTTAGCAATAATTTCCCA 57.589 30.769 0.00 0.00 0.00 4.37
91 92 9.301153 CATGTACACTTTTAGCAATAATTTCCC 57.699 33.333 0.00 0.00 0.00 3.97
92 93 9.301153 CCATGTACACTTTTAGCAATAATTTCC 57.699 33.333 0.00 0.00 0.00 3.13
95 96 9.461312 TCTCCATGTACACTTTTAGCAATAATT 57.539 29.630 0.00 0.00 0.00 1.40
96 97 9.632638 ATCTCCATGTACACTTTTAGCAATAAT 57.367 29.630 0.00 0.00 0.00 1.28
97 98 9.109393 GATCTCCATGTACACTTTTAGCAATAA 57.891 33.333 0.00 0.00 0.00 1.40
98 99 8.264347 TGATCTCCATGTACACTTTTAGCAATA 58.736 33.333 0.00 0.00 0.00 1.90
99 100 7.112122 TGATCTCCATGTACACTTTTAGCAAT 58.888 34.615 0.00 0.00 0.00 3.56
100 101 6.472016 TGATCTCCATGTACACTTTTAGCAA 58.528 36.000 0.00 0.00 0.00 3.91
101 102 6.048732 TGATCTCCATGTACACTTTTAGCA 57.951 37.500 0.00 0.00 0.00 3.49
102 103 6.952743 CATGATCTCCATGTACACTTTTAGC 58.047 40.000 0.00 0.00 45.83 3.09
113 114 8.312564 CAGAATACTGTATCATGATCTCCATGT 58.687 37.037 12.53 9.77 43.82 3.21
114 115 8.529476 TCAGAATACTGTATCATGATCTCCATG 58.471 37.037 12.53 2.76 46.32 3.66
115 116 8.661752 TCAGAATACTGTATCATGATCTCCAT 57.338 34.615 12.53 0.00 43.81 3.41
116 117 8.482852 TTCAGAATACTGTATCATGATCTCCA 57.517 34.615 12.53 6.94 43.81 3.86
117 118 9.770097 TTTTCAGAATACTGTATCATGATCTCC 57.230 33.333 12.53 2.27 43.81 3.71
122 123 9.399797 AGCATTTTTCAGAATACTGTATCATGA 57.600 29.630 0.00 0.00 43.81 3.07
125 126 9.844790 CAAAGCATTTTTCAGAATACTGTATCA 57.155 29.630 0.00 0.00 39.82 2.15
126 127 8.801913 GCAAAGCATTTTTCAGAATACTGTATC 58.198 33.333 0.00 0.00 39.82 2.24
127 128 8.306038 TGCAAAGCATTTTTCAGAATACTGTAT 58.694 29.630 0.00 0.00 39.82 2.29
128 129 7.656412 TGCAAAGCATTTTTCAGAATACTGTA 58.344 30.769 0.00 0.00 39.82 2.74
129 130 6.514947 TGCAAAGCATTTTTCAGAATACTGT 58.485 32.000 0.00 0.00 39.82 3.55
130 131 7.410800 TTGCAAAGCATTTTTCAGAATACTG 57.589 32.000 0.00 0.00 40.90 2.74
131 132 8.500773 CATTTGCAAAGCATTTTTCAGAATACT 58.499 29.630 18.19 0.00 38.76 2.12
132 133 7.269724 GCATTTGCAAAGCATTTTTCAGAATAC 59.730 33.333 18.19 0.00 38.76 1.89
133 134 7.173562 AGCATTTGCAAAGCATTTTTCAGAATA 59.826 29.630 25.24 0.00 45.16 1.75
134 135 6.016610 AGCATTTGCAAAGCATTTTTCAGAAT 60.017 30.769 25.24 2.28 45.16 2.40
135 136 5.297278 AGCATTTGCAAAGCATTTTTCAGAA 59.703 32.000 25.24 0.00 45.16 3.02
136 137 4.817464 AGCATTTGCAAAGCATTTTTCAGA 59.183 33.333 25.24 0.00 45.16 3.27
137 138 5.103290 AGCATTTGCAAAGCATTTTTCAG 57.897 34.783 25.24 6.87 45.16 3.02
138 139 6.348622 CCATAGCATTTGCAAAGCATTTTTCA 60.349 34.615 25.24 0.38 45.16 2.69
139 140 6.025280 CCATAGCATTTGCAAAGCATTTTTC 58.975 36.000 25.24 3.76 45.16 2.29
140 141 5.474189 ACCATAGCATTTGCAAAGCATTTTT 59.526 32.000 25.24 13.25 45.16 1.94
141 142 5.005094 ACCATAGCATTTGCAAAGCATTTT 58.995 33.333 25.24 13.50 45.16 1.82
142 143 4.393680 CACCATAGCATTTGCAAAGCATTT 59.606 37.500 25.24 13.75 45.16 2.32
143 144 3.936453 CACCATAGCATTTGCAAAGCATT 59.064 39.130 25.24 14.72 45.16 3.56
144 145 3.527533 CACCATAGCATTTGCAAAGCAT 58.472 40.909 25.24 17.17 45.16 3.79
145 146 2.931753 GCACCATAGCATTTGCAAAGCA 60.932 45.455 25.24 16.16 45.16 3.91
146 147 1.662122 GCACCATAGCATTTGCAAAGC 59.338 47.619 18.19 19.01 45.16 3.51
147 148 2.093869 AGGCACCATAGCATTTGCAAAG 60.094 45.455 18.19 10.61 45.16 2.77
148 149 1.901159 AGGCACCATAGCATTTGCAAA 59.099 42.857 15.44 15.44 45.16 3.68
149 150 1.559368 AGGCACCATAGCATTTGCAA 58.441 45.000 5.20 0.00 45.16 4.08
150 151 2.433662 TAGGCACCATAGCATTTGCA 57.566 45.000 5.20 0.00 45.16 4.08
151 152 2.886523 TGATAGGCACCATAGCATTTGC 59.113 45.455 0.00 0.00 42.49 3.68
152 153 6.827251 AGATATGATAGGCACCATAGCATTTG 59.173 38.462 10.17 0.00 34.97 2.32
153 154 6.966751 AGATATGATAGGCACCATAGCATTT 58.033 36.000 10.17 0.00 34.97 2.32
154 155 6.157471 TGAGATATGATAGGCACCATAGCATT 59.843 38.462 10.17 0.00 34.97 3.56
155 156 5.664457 TGAGATATGATAGGCACCATAGCAT 59.336 40.000 10.17 1.09 34.97 3.79
156 157 5.025453 TGAGATATGATAGGCACCATAGCA 58.975 41.667 10.17 0.00 34.97 3.49
157 158 5.128499 ACTGAGATATGATAGGCACCATAGC 59.872 44.000 0.00 0.00 33.30 2.97
158 159 6.788598 ACTGAGATATGATAGGCACCATAG 57.211 41.667 0.00 0.00 0.00 2.23
159 160 6.127619 CGAACTGAGATATGATAGGCACCATA 60.128 42.308 0.00 0.00 0.00 2.74
160 161 5.337089 CGAACTGAGATATGATAGGCACCAT 60.337 44.000 0.00 0.00 0.00 3.55
161 162 4.021981 CGAACTGAGATATGATAGGCACCA 60.022 45.833 0.00 0.00 0.00 4.17
162 163 4.021894 ACGAACTGAGATATGATAGGCACC 60.022 45.833 0.00 0.00 0.00 5.01
163 164 5.127693 ACGAACTGAGATATGATAGGCAC 57.872 43.478 0.00 0.00 0.00 5.01
164 165 5.791336 AACGAACTGAGATATGATAGGCA 57.209 39.130 0.00 0.00 0.00 4.75
165 166 6.586844 GGTTAACGAACTGAGATATGATAGGC 59.413 42.308 0.00 0.00 35.74 3.93
183 184 0.367887 GCTAAAGACGCCGGTTAACG 59.632 55.000 1.90 0.00 43.80 3.18
184 185 0.723414 GGCTAAAGACGCCGGTTAAC 59.277 55.000 1.90 0.00 37.87 2.01
185 186 3.142124 GGCTAAAGACGCCGGTTAA 57.858 52.632 1.90 0.00 37.87 2.01
186 187 4.917474 GGCTAAAGACGCCGGTTA 57.083 55.556 1.90 0.00 37.87 2.85
192 193 1.798813 CCGGATAATGGCTAAAGACGC 59.201 52.381 0.00 0.00 0.00 5.19
193 194 2.800544 CACCGGATAATGGCTAAAGACG 59.199 50.000 9.46 0.00 0.00 4.18
194 195 4.067972 TCACCGGATAATGGCTAAAGAC 57.932 45.455 9.46 0.00 0.00 3.01
195 196 4.407621 TCTTCACCGGATAATGGCTAAAGA 59.592 41.667 9.46 0.00 0.00 2.52
196 197 4.703897 TCTTCACCGGATAATGGCTAAAG 58.296 43.478 9.46 0.00 0.00 1.85
197 198 4.407621 TCTCTTCACCGGATAATGGCTAAA 59.592 41.667 9.46 0.00 0.00 1.85
198 199 3.964688 TCTCTTCACCGGATAATGGCTAA 59.035 43.478 9.46 0.00 0.00 3.09
199 200 3.572642 TCTCTTCACCGGATAATGGCTA 58.427 45.455 9.46 0.00 0.00 3.93
200 201 2.398588 TCTCTTCACCGGATAATGGCT 58.601 47.619 9.46 0.00 0.00 4.75
201 202 2.910688 TCTCTTCACCGGATAATGGC 57.089 50.000 9.46 0.00 0.00 4.40
202 203 4.342862 ACATCTCTTCACCGGATAATGG 57.657 45.455 9.46 0.00 0.00 3.16
203 204 5.406780 GCTTACATCTCTTCACCGGATAATG 59.593 44.000 9.46 0.00 0.00 1.90
204 205 5.070446 TGCTTACATCTCTTCACCGGATAAT 59.930 40.000 9.46 0.00 0.00 1.28
205 206 4.404394 TGCTTACATCTCTTCACCGGATAA 59.596 41.667 9.46 0.00 0.00 1.75
206 207 3.958147 TGCTTACATCTCTTCACCGGATA 59.042 43.478 9.46 0.00 0.00 2.59
221 222 0.759959 TCCTCAACGGGTTGCTTACA 59.240 50.000 6.67 0.00 40.24 2.41
222 223 1.154197 GTCCTCAACGGGTTGCTTAC 58.846 55.000 6.67 1.47 40.24 2.34
234 235 2.680841 CACAAACCGAACAAGTCCTCAA 59.319 45.455 0.00 0.00 0.00 3.02
260 261 9.618890 TCAAAATCTTGTAAGAATCATCTAGGG 57.381 33.333 0.00 0.00 38.77 3.53
267 268 7.109501 TCCGGATCAAAATCTTGTAAGAATCA 58.890 34.615 0.00 0.00 38.77 2.57
298 302 2.486592 GTGGAACAAATTCTACACGGGG 59.513 50.000 0.00 0.00 43.80 5.73
299 303 3.824414 GTGGAACAAATTCTACACGGG 57.176 47.619 0.00 0.00 43.80 5.28
316 323 2.039746 TCTTGTACCCCTGTTCATGTGG 59.960 50.000 0.00 0.00 0.00 4.17
321 328 2.983192 TGGAATCTTGTACCCCTGTTCA 59.017 45.455 0.00 0.00 0.00 3.18
328 335 4.080299 ACAATCCTCTGGAATCTTGTACCC 60.080 45.833 3.18 0.00 32.70 3.69
412 446 6.723298 TGCCAACTCAAATCCTTAGAAAAA 57.277 33.333 0.00 0.00 0.00 1.94
480 514 1.737793 GGCCTCGTTCAGTTTACATGG 59.262 52.381 0.00 0.00 0.00 3.66
482 516 2.301870 TGAGGCCTCGTTCAGTTTACAT 59.698 45.455 27.43 0.00 0.00 2.29
545 588 6.799441 TGTTTGACGATGAAATAACGATTTGG 59.201 34.615 0.00 0.00 35.33 3.28
555 599 5.278463 CCTTCTGGTTGTTTGACGATGAAAT 60.278 40.000 0.00 0.00 0.00 2.17
582 626 6.347696 TGGTTTCATTTCATGCTCTTGTTTT 58.652 32.000 0.00 0.00 0.00 2.43
831 2100 4.666397 TTAACGCGCACGGGAGCA 62.666 61.111 15.31 0.00 46.04 4.26
835 2104 2.099446 CCATTTAACGCGCACGGG 59.901 61.111 5.73 5.49 46.04 5.28
902 2525 2.200067 CTTAAGAGAGGATGCACAGCG 58.800 52.381 0.00 0.00 0.00 5.18
946 2575 2.912025 CGGTGGCTGCCCTGTTTT 60.912 61.111 17.53 0.00 0.00 2.43
1080 3087 1.001764 TTGGAGGTCGAGAGGCGTA 60.002 57.895 0.00 0.00 41.80 4.42
1085 3092 1.803943 CGGACTTGGAGGTCGAGAG 59.196 63.158 0.00 0.00 37.12 3.20
1086 3093 2.341101 GCGGACTTGGAGGTCGAGA 61.341 63.158 0.00 0.00 37.12 4.04
1087 3094 2.182030 GCGGACTTGGAGGTCGAG 59.818 66.667 0.00 0.00 37.12 4.04
1088 3095 3.379445 GGCGGACTTGGAGGTCGA 61.379 66.667 0.00 0.00 37.12 4.20
1090 3097 4.452733 CCGGCGGACTTGGAGGTC 62.453 72.222 24.41 0.00 35.66 3.85
1135 3142 2.438614 CGGCGGAGAGAGGTCTGA 60.439 66.667 0.00 0.00 30.97 3.27
1181 3193 2.018086 AGGGGAGGGGAGAGGAGAG 61.018 68.421 0.00 0.00 0.00 3.20
1184 3196 3.430497 CGAGGGGAGGGGAGAGGA 61.430 72.222 0.00 0.00 0.00 3.71
1414 3436 4.704833 TCCTCTTGCTGCCACGCC 62.705 66.667 0.00 0.00 0.00 5.68
1433 3458 1.219393 CCGCTTCTCCTCCTTGTCC 59.781 63.158 0.00 0.00 0.00 4.02
1496 3521 3.752167 TCCGACCCCTCCTCCTCC 61.752 72.222 0.00 0.00 0.00 4.30
1497 3522 2.442458 GTCCGACCCCTCCTCCTC 60.442 72.222 0.00 0.00 0.00 3.71
1498 3523 4.444081 CGTCCGACCCCTCCTCCT 62.444 72.222 0.00 0.00 0.00 3.69
1613 3641 0.315251 TATCAGATTCGGCGCTGGAG 59.685 55.000 17.88 0.00 33.05 3.86
1647 3678 2.774687 ACAAAATCCACCACGTCTACC 58.225 47.619 0.00 0.00 0.00 3.18
1651 3682 2.031157 CCTGAACAAAATCCACCACGTC 60.031 50.000 0.00 0.00 0.00 4.34
1665 3697 1.301401 GCACGCCTACACCTGAACA 60.301 57.895 0.00 0.00 0.00 3.18
1679 3711 0.034896 ACCCTACTGACCAAAGCACG 59.965 55.000 0.00 0.00 0.00 5.34
1803 3853 0.184933 CACCTCCGATCTCCTCCTCT 59.815 60.000 0.00 0.00 0.00 3.69
1815 3865 1.729470 CTCTCATCCCGTCACCTCCG 61.729 65.000 0.00 0.00 0.00 4.63
1833 3883 1.131638 TCCTGACAACCTCACTTGCT 58.868 50.000 0.00 0.00 0.00 3.91
1836 3886 2.370189 CTCCTTCCTGACAACCTCACTT 59.630 50.000 0.00 0.00 0.00 3.16
2033 4087 6.094048 ACCTGTCATCGTCAATAATTGGAAAG 59.906 38.462 0.00 0.00 0.00 2.62
2167 4221 2.430244 CCTCCGTCACCGACAACG 60.430 66.667 0.00 0.00 38.58 4.10
2269 4323 9.480053 AATTGTATTTGAATAAGCATATGTGGC 57.520 29.630 4.29 0.00 0.00 5.01
2421 4475 0.550914 TACCCCTAATGGCCTGCAAG 59.449 55.000 3.32 0.00 0.00 4.01
3129 5233 2.584791 CACACGCTTGGTTGCTAATTC 58.415 47.619 0.00 0.00 0.00 2.17
3145 5249 5.479306 TGTTTGATAGAGTTCCTAGCACAC 58.521 41.667 0.00 0.00 42.81 3.82
3146 5250 5.738619 TGTTTGATAGAGTTCCTAGCACA 57.261 39.130 0.00 0.00 42.81 4.57
3172 5284 5.324409 AGACAGTCCAAATTTCTATGCCAA 58.676 37.500 0.00 0.00 0.00 4.52
3225 5345 4.324402 GCACAACAAAATTTGATAGAGCCG 59.676 41.667 13.19 0.00 0.00 5.52
3510 5645 9.490663 CTTAGAAATTTTAGCATCTTAACCACG 57.509 33.333 0.00 0.00 0.00 4.94
3719 5854 7.687941 ATGACAACAAGGGTAGTTTGAATAG 57.312 36.000 0.00 0.00 0.00 1.73
3931 6229 2.618241 TGATCATTTTAGCGGTGGATGC 59.382 45.455 0.00 0.00 0.00 3.91
3969 6269 8.630054 AAATGTTACTGGCAACTAAGACAATA 57.370 30.769 0.00 0.00 37.61 1.90
3971 6271 6.952773 AAATGTTACTGGCAACTAAGACAA 57.047 33.333 0.00 0.00 37.61 3.18
4032 6334 9.392506 TGTAGGGATATCAGAAATATTTCAGGA 57.607 33.333 26.02 22.12 39.61 3.86
4080 6382 5.007626 CACATAGCAATACAGGTGCGTATTT 59.992 40.000 0.00 0.00 46.86 1.40
4100 6402 7.928706 GCTGTTCAAACTAGAGTATATCCACAT 59.071 37.037 0.00 0.00 0.00 3.21
4268 6574 7.292713 TCTACACTTTTACTCATGGTGTACA 57.707 36.000 0.00 0.00 40.78 2.90
4274 6580 6.878317 TCATCCTCTACACTTTTACTCATGG 58.122 40.000 0.00 0.00 0.00 3.66
4386 6700 1.789506 AACAGCGCTCTTTCTGAGTC 58.210 50.000 7.13 0.00 44.41 3.36
4550 6866 6.627087 TCTCAATTGTACTTCCAGGAGAAT 57.373 37.500 5.13 0.00 32.82 2.40
4554 6870 6.778821 TGATTTCTCAATTGTACTTCCAGGA 58.221 36.000 5.13 0.00 0.00 3.86
4555 6871 7.555554 AGATGATTTCTCAATTGTACTTCCAGG 59.444 37.037 5.13 0.00 34.37 4.45
4570 6886 7.551035 AAGCAGAATACACAGATGATTTCTC 57.449 36.000 0.00 0.00 32.16 2.87
4585 6901 9.547753 CAGGCTACTTCTTATTAAAGCAGAATA 57.452 33.333 0.00 0.00 31.28 1.75
4859 7177 2.024414 GCCTCTGTTGTTTGACCAAGT 58.976 47.619 0.00 0.00 0.00 3.16
5015 7339 8.930760 CCTGGAGTAAATAGATCGAATTTCATC 58.069 37.037 11.03 10.32 0.00 2.92
5026 7350 7.520798 TCATCAATTGCCTGGAGTAAATAGAT 58.479 34.615 0.00 0.00 0.00 1.98
5030 7354 5.954150 ACTTCATCAATTGCCTGGAGTAAAT 59.046 36.000 16.07 0.00 0.00 1.40
5160 7799 1.599797 GACAAACCCACGGTCCAGG 60.600 63.158 0.00 0.00 33.12 4.45
5187 7826 1.389204 CGAACTTGCTCTCGTCGTCG 61.389 60.000 0.00 0.00 38.55 5.12
5310 7949 0.597568 CTTTCATGAAGCCGGCAACA 59.402 50.000 31.54 26.82 0.00 3.33
5330 7969 3.394836 AGTCGAAGGGCTCCCAGC 61.395 66.667 7.82 0.00 41.46 4.85
5394 8035 3.312421 TGCGTGAGTCTTCCAAAGAAAAG 59.688 43.478 0.00 0.00 39.67 2.27
5397 8038 2.158957 ACTGCGTGAGTCTTCCAAAGAA 60.159 45.455 0.00 0.00 39.67 2.52
5398 8039 1.412710 ACTGCGTGAGTCTTCCAAAGA 59.587 47.619 0.00 0.00 34.51 2.52
5417 8058 4.379082 CCCTACAAAACTATCGGTGCAAAC 60.379 45.833 0.00 0.00 0.00 2.93
5428 8069 8.431910 AGTACAATCTCTTCCCTACAAAACTA 57.568 34.615 0.00 0.00 0.00 2.24
5456 8097 9.729023 TTTAAAAACACAGATACATGACAACAG 57.271 29.630 0.00 0.00 0.00 3.16
5582 8307 4.782019 TTAGTTTGGTCAATGATGGCAC 57.218 40.909 0.00 0.00 30.82 5.01
5638 8365 1.859302 AGAAGAGACCCCTGCTACTG 58.141 55.000 0.00 0.00 0.00 2.74
5639 8366 2.462723 GAAGAAGAGACCCCTGCTACT 58.537 52.381 0.00 0.00 0.00 2.57
5640 8367 1.483004 GGAAGAAGAGACCCCTGCTAC 59.517 57.143 0.00 0.00 0.00 3.58
5641 8368 1.362932 AGGAAGAAGAGACCCCTGCTA 59.637 52.381 0.00 0.00 0.00 3.49
5642 8369 0.118144 AGGAAGAAGAGACCCCTGCT 59.882 55.000 0.00 0.00 0.00 4.24
5643 8370 0.539518 GAGGAAGAAGAGACCCCTGC 59.460 60.000 0.00 0.00 0.00 4.85
5644 8371 0.820871 CGAGGAAGAAGAGACCCCTG 59.179 60.000 0.00 0.00 0.00 4.45
5645 8372 0.705253 TCGAGGAAGAAGAGACCCCT 59.295 55.000 0.00 0.00 0.00 4.79
5649 8376 2.414426 GGAACGTCGAGGAAGAAGAGAC 60.414 54.545 12.85 0.00 0.00 3.36
5650 8377 1.811359 GGAACGTCGAGGAAGAAGAGA 59.189 52.381 12.85 0.00 0.00 3.10
5667 8402 1.885163 GAGGAAGAAGGCGACCGGAA 61.885 60.000 9.46 0.00 0.00 4.30
5728 8464 1.051008 TCTGCCAGAGCTTCAGTTCA 58.949 50.000 0.00 0.00 40.80 3.18
5729 8465 1.270518 TGTCTGCCAGAGCTTCAGTTC 60.271 52.381 0.00 0.00 40.80 3.01
5732 8468 1.066358 TCATGTCTGCCAGAGCTTCAG 60.066 52.381 0.00 0.00 40.80 3.02
5733 8469 0.978907 TCATGTCTGCCAGAGCTTCA 59.021 50.000 0.00 0.00 40.80 3.02
5734 8470 2.105006 TTCATGTCTGCCAGAGCTTC 57.895 50.000 0.00 0.00 40.80 3.86
5741 8477 1.750018 CGGCCATTCATGTCTGCCA 60.750 57.895 2.24 0.00 42.27 4.92
5747 8483 2.035469 TGCCACGGCCATTCATGT 59.965 55.556 2.24 0.00 41.09 3.21
5756 8492 4.687215 TGAGCTCACTGCCACGGC 62.687 66.667 13.74 0.00 44.23 5.68
5758 8494 2.433838 CCTGAGCTCACTGCCACG 60.434 66.667 13.74 0.54 44.23 4.94
5759 8495 2.745492 GCCTGAGCTCACTGCCAC 60.745 66.667 13.74 0.00 44.23 5.01
5805 8541 2.187163 GTTAGTCCGGCAGAGGGC 59.813 66.667 0.00 0.00 43.74 5.19
5806 8542 1.218316 GTGTTAGTCCGGCAGAGGG 59.782 63.158 0.00 0.00 0.00 4.30
5811 8547 2.356553 GTGCGTGTTAGTCCGGCA 60.357 61.111 0.00 0.00 0.00 5.69
5813 8549 2.369629 CGTGTGCGTGTTAGTCCGG 61.370 63.158 0.00 0.00 0.00 5.14
5839 8575 0.953960 GGTGTACTTGGGGCACGAAG 60.954 60.000 9.43 9.43 38.27 3.79
5840 8576 1.071814 GGTGTACTTGGGGCACGAA 59.928 57.895 0.00 0.00 34.25 3.85
5841 8577 2.107041 CTGGTGTACTTGGGGCACGA 62.107 60.000 0.00 0.00 34.25 4.35
5844 8580 2.434331 GCTGGTGTACTTGGGGCA 59.566 61.111 0.00 0.00 0.00 5.36
5846 8582 1.375523 GTCGCTGGTGTACTTGGGG 60.376 63.158 0.00 0.00 0.00 4.96
5915 8690 3.365265 CCAAGGTGCCCGCAGTTC 61.365 66.667 0.00 0.00 0.00 3.01
5971 8753 3.767902 TGACTGTGTGATCATCAACCA 57.232 42.857 0.00 0.59 0.00 3.67
5972 8754 4.871993 GATGACTGTGTGATCATCAACC 57.128 45.455 0.00 0.00 46.98 3.77
5978 8760 1.556451 CCCCTGATGACTGTGTGATCA 59.444 52.381 0.00 0.00 34.13 2.92
5979 8761 1.833630 TCCCCTGATGACTGTGTGATC 59.166 52.381 0.00 0.00 0.00 2.92
5980 8762 1.836166 CTCCCCTGATGACTGTGTGAT 59.164 52.381 0.00 0.00 0.00 3.06
5981 8763 1.203174 TCTCCCCTGATGACTGTGTGA 60.203 52.381 0.00 0.00 0.00 3.58
5983 8765 1.905215 CTTCTCCCCTGATGACTGTGT 59.095 52.381 0.00 0.00 0.00 3.72
5984 8766 1.209019 CCTTCTCCCCTGATGACTGTG 59.791 57.143 0.00 0.00 0.00 3.66
5985 8767 1.203364 ACCTTCTCCCCTGATGACTGT 60.203 52.381 0.00 0.00 0.00 3.55
5987 8769 1.912043 CAACCTTCTCCCCTGATGACT 59.088 52.381 0.00 0.00 0.00 3.41
5988 8770 1.680249 GCAACCTTCTCCCCTGATGAC 60.680 57.143 0.00 0.00 0.00 3.06
5989 8771 0.620556 GCAACCTTCTCCCCTGATGA 59.379 55.000 0.00 0.00 0.00 2.92
5990 8772 0.622665 AGCAACCTTCTCCCCTGATG 59.377 55.000 0.00 0.00 0.00 3.07
5991 8773 1.376649 AAGCAACCTTCTCCCCTGAT 58.623 50.000 0.00 0.00 0.00 2.90
5992 8774 1.149101 AAAGCAACCTTCTCCCCTGA 58.851 50.000 0.00 0.00 0.00 3.86
5994 8776 1.217942 ACAAAAGCAACCTTCTCCCCT 59.782 47.619 0.00 0.00 0.00 4.79
5995 8777 1.613925 GACAAAAGCAACCTTCTCCCC 59.386 52.381 0.00 0.00 0.00 4.81
5996 8778 1.266989 CGACAAAAGCAACCTTCTCCC 59.733 52.381 0.00 0.00 0.00 4.30
5997 8779 1.947456 ACGACAAAAGCAACCTTCTCC 59.053 47.619 0.00 0.00 0.00 3.71
5998 8780 2.348591 CGACGACAAAAGCAACCTTCTC 60.349 50.000 0.00 0.00 0.00 2.87
6001 11707 0.661020 CCGACGACAAAAGCAACCTT 59.339 50.000 0.00 0.00 0.00 3.50
6017 11723 1.709147 GGCGCGTCTAGACTTACCGA 61.709 60.000 20.34 0.00 0.00 4.69
6030 11736 2.997897 AGAAGAGAAGGGGCGCGT 60.998 61.111 8.43 0.00 0.00 6.01
6053 11761 5.648092 AGGAGTCAAAAGTTACATACCATGC 59.352 40.000 0.00 0.00 0.00 4.06
6090 11798 1.180029 CCCCTCACATTCTGCCAAAG 58.820 55.000 0.00 0.00 0.00 2.77
6093 11801 1.133181 TCACCCCTCACATTCTGCCA 61.133 55.000 0.00 0.00 0.00 4.92
6095 11803 1.457346 CTTCACCCCTCACATTCTGC 58.543 55.000 0.00 0.00 0.00 4.26
6096 11804 1.630369 TCCTTCACCCCTCACATTCTG 59.370 52.381 0.00 0.00 0.00 3.02
6097 11805 1.912043 CTCCTTCACCCCTCACATTCT 59.088 52.381 0.00 0.00 0.00 2.40
6098 11806 1.909302 TCTCCTTCACCCCTCACATTC 59.091 52.381 0.00 0.00 0.00 2.67
6099 11807 2.044793 TCTCCTTCACCCCTCACATT 57.955 50.000 0.00 0.00 0.00 2.71
6100 11808 2.044793 TTCTCCTTCACCCCTCACAT 57.955 50.000 0.00 0.00 0.00 3.21
6101 11809 2.044793 ATTCTCCTTCACCCCTCACA 57.955 50.000 0.00 0.00 0.00 3.58
6110 11819 5.477984 CACCCAAAGATCAAATTCTCCTTCA 59.522 40.000 0.00 0.00 0.00 3.02
6120 11829 2.692557 CCACACACACCCAAAGATCAAA 59.307 45.455 0.00 0.00 0.00 2.69
6139 11848 3.023116 CATTGCCCTCCTCCCCCA 61.023 66.667 0.00 0.00 0.00 4.96
6141 11850 4.529731 GCCATTGCCCTCCTCCCC 62.530 72.222 0.00 0.00 0.00 4.81
6234 11943 7.064966 GGGGCTAATGAGAAAACATGATTTTTG 59.935 37.037 0.00 0.00 0.00 2.44
6239 11948 4.218312 GGGGGCTAATGAGAAAACATGAT 58.782 43.478 0.00 0.00 0.00 2.45
6272 11981 3.482722 TTCGAGGTAGACGAACATGTC 57.517 47.619 0.00 0.00 43.19 3.06
6290 11999 4.240096 CAAATGGTCCTTTGCTGATGTTC 58.760 43.478 0.00 0.00 30.06 3.18
6291 12000 3.007182 CCAAATGGTCCTTTGCTGATGTT 59.993 43.478 7.79 0.00 35.28 2.71
6297 12006 2.683211 ACTCCAAATGGTCCTTTGCT 57.317 45.000 0.00 0.00 35.28 3.91
6327 12036 4.499183 TGAACGAAGCCAAAACAAATGTT 58.501 34.783 0.00 0.00 40.50 2.71
6331 12040 4.116747 ACATGAACGAAGCCAAAACAAA 57.883 36.364 0.00 0.00 0.00 2.83
6404 12113 6.039270 CCAATTAAAGGAATAGTCGCATGGAA 59.961 38.462 0.00 0.00 0.00 3.53
6435 12144 6.100404 AGTGTATACGTTACAAGGGTGAAA 57.900 37.500 10.72 0.00 0.00 2.69
6449 12158 6.091577 TGCTTTGGTTATGACAAGTGTATACG 59.908 38.462 0.00 0.00 0.00 3.06
6460 12169 6.756542 ACTTCTTGTTTTGCTTTGGTTATGAC 59.243 34.615 0.00 0.00 0.00 3.06
6469 12178 4.506758 ACATGCACTTCTTGTTTTGCTTT 58.493 34.783 0.00 0.00 35.91 3.51
6495 12204 4.768968 AGCATAACCATGAAAGAGCAAAGT 59.231 37.500 0.00 0.00 33.67 2.66
6509 12218 4.980573 AGTGTAAGACCAAAGCATAACCA 58.019 39.130 0.00 0.00 0.00 3.67
6527 12236 3.587506 ACTCCAATTTGGCTAGGTAGTGT 59.412 43.478 10.76 0.00 37.47 3.55
6530 12239 5.104259 AGAACTCCAATTTGGCTAGGTAG 57.896 43.478 10.76 4.46 37.47 3.18
6547 12256 5.529060 CCTTTAACTCACAGCAAAGAGAACT 59.471 40.000 6.35 0.00 35.83 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.