Multiple sequence alignment - TraesCS5B01G383500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G383500 chr5B 100.000 2519 0 0 1 2519 562372450 562369932 0.000000e+00 4652.0
1 TraesCS5B01G383500 chr5B 95.652 69 3 0 2203 2271 562269249 562269181 7.370000e-21 111.0
2 TraesCS5B01G383500 chr5B 87.500 64 2 5 2462 2519 562269057 562268994 4.500000e-08 69.4
3 TraesCS5B01G383500 chr5B 90.741 54 0 4 1625 1678 562269847 562269799 1.620000e-07 67.6
4 TraesCS5B01G383500 chr5D 86.697 1992 126 65 591 2519 458747585 458745670 0.000000e+00 2082.0
5 TraesCS5B01G383500 chr5D 85.904 603 37 16 2 591 458748188 458747621 1.290000e-167 599.0
6 TraesCS5B01G383500 chr5D 87.302 63 3 2 2462 2519 458727128 458727066 1.620000e-07 67.6
7 TraesCS5B01G383500 chr5D 85.714 63 4 1 2462 2519 458709171 458709109 7.520000e-06 62.1
8 TraesCS5B01G383500 chr5A 89.405 1227 72 25 736 1927 577790376 577789173 0.000000e+00 1493.0
9 TraesCS5B01G383500 chr5A 85.657 746 58 23 2 719 577791411 577790687 0.000000e+00 739.0
10 TraesCS5B01G383500 chr5A 82.353 289 32 8 2045 2328 577732153 577731879 1.510000e-57 233.0
11 TraesCS5B01G383500 chr5A 94.161 137 7 1 2281 2416 577742480 577742344 9.130000e-50 207.0
12 TraesCS5B01G383500 chr5A 85.393 178 11 8 2237 2413 577788871 577788708 1.200000e-38 171.0
13 TraesCS5B01G383500 chr5A 93.103 58 4 0 2462 2519 577788692 577788635 4.460000e-13 86.1
14 TraesCS5B01G383500 chr5A 88.889 63 1 1 2463 2519 577731799 577731737 3.480000e-09 73.1
15 TraesCS5B01G383500 chr3A 83.562 219 25 8 1039 1256 233025337 233025129 7.110000e-46 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G383500 chr5B 562369932 562372450 2518 True 4652.000 4652 100.0000 1 2519 1 chr5B.!!$R1 2518
1 TraesCS5B01G383500 chr5D 458745670 458748188 2518 True 1340.500 2082 86.3005 2 2519 2 chr5D.!!$R3 2517
2 TraesCS5B01G383500 chr5A 577788635 577791411 2776 True 622.275 1493 88.3895 2 2519 4 chr5A.!!$R3 2517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
836 1196 0.253347 TTGGCATCCTCCTTCCTCCT 60.253 55.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1802 2203 0.032912 TCAGCTATACACGGGGGACA 60.033 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 78 5.753744 AGCGTGACAATATTTTCAAACGAA 58.246 33.333 15.04 0.00 0.00 3.85
68 79 5.851177 AGCGTGACAATATTTTCAAACGAAG 59.149 36.000 15.04 3.09 0.00 3.79
89 100 7.449704 ACGAAGTATATCTAAAACCCGAGGTAT 59.550 37.037 0.00 0.00 41.94 2.73
171 183 2.858745 AGGCGTGATGTTGGTACTTTT 58.141 42.857 0.00 0.00 0.00 2.27
194 206 2.130193 CAGGAGATCCAGGAAATCCCA 58.870 52.381 16.52 0.00 38.89 4.37
195 207 2.106166 CAGGAGATCCAGGAAATCCCAG 59.894 54.545 16.52 8.60 38.89 4.45
325 337 0.624254 ATCTCCTTTTCCCCGTTCCC 59.376 55.000 0.00 0.00 0.00 3.97
378 390 7.076446 TCCAAAAGCTCCTATCTAATACTCCT 58.924 38.462 0.00 0.00 0.00 3.69
379 391 8.232412 TCCAAAAGCTCCTATCTAATACTCCTA 58.768 37.037 0.00 0.00 0.00 2.94
380 392 8.308207 CCAAAAGCTCCTATCTAATACTCCTAC 58.692 40.741 0.00 0.00 0.00 3.18
381 393 9.084533 CAAAAGCTCCTATCTAATACTCCTACT 57.915 37.037 0.00 0.00 0.00 2.57
382 394 8.873186 AAAGCTCCTATCTAATACTCCTACTC 57.127 38.462 0.00 0.00 0.00 2.59
383 395 6.965607 AGCTCCTATCTAATACTCCTACTCC 58.034 44.000 0.00 0.00 0.00 3.85
425 438 0.819582 CCTCGCTTTGCCCAATGATT 59.180 50.000 0.00 0.00 0.00 2.57
427 440 1.747355 CTCGCTTTGCCCAATGATTCT 59.253 47.619 0.00 0.00 0.00 2.40
434 447 0.379669 GCCCAATGATTCTCAGCACG 59.620 55.000 0.00 0.00 0.00 5.34
489 502 5.419542 AGCATCACACGACATAATGTAGTT 58.580 37.500 0.00 0.00 33.97 2.24
530 543 1.352017 TGGGACTTGACATGCAGTGAT 59.648 47.619 0.00 0.00 0.00 3.06
531 544 1.741706 GGGACTTGACATGCAGTGATG 59.258 52.381 0.00 0.00 0.00 3.07
532 545 1.131883 GGACTTGACATGCAGTGATGC 59.868 52.381 0.00 0.00 0.00 3.91
553 566 2.663826 GTGATCCCACTCACTCACTC 57.336 55.000 0.00 0.00 41.87 3.51
558 573 1.214062 CCACTCACTCACTCGCCTC 59.786 63.158 0.00 0.00 0.00 4.70
622 681 2.746803 CGATTTCGCCGTGGGGAAC 61.747 63.158 16.94 7.00 44.71 3.62
642 701 3.842126 CGCATGGACACGTCAGCG 61.842 66.667 13.63 13.63 44.93 5.18
644 703 2.048222 CATGGACACGTCAGCGGT 60.048 61.111 0.00 0.00 43.45 5.68
730 792 1.268437 CGCTAGTACGTTCCAGTAGGC 60.268 57.143 0.00 0.00 33.74 3.93
829 1189 1.229951 TCCAGGTTGGCATCCTCCT 60.230 57.895 14.21 4.84 37.47 3.69
836 1196 0.253347 TTGGCATCCTCCTTCCTCCT 60.253 55.000 0.00 0.00 0.00 3.69
901 1271 2.284995 GGCTCACTCCTCCCCACT 60.285 66.667 0.00 0.00 0.00 4.00
904 1279 1.612395 GCTCACTCCTCCCCACTCAG 61.612 65.000 0.00 0.00 0.00 3.35
910 1285 2.930019 CTCCCCACTCAGCCACCA 60.930 66.667 0.00 0.00 0.00 4.17
962 1342 6.040616 TCCTCTCTTCACCTCGGATTAATAAC 59.959 42.308 0.00 0.00 0.00 1.89
964 1344 5.070047 TCTCTTCACCTCGGATTAATAACCC 59.930 44.000 0.00 0.00 0.00 4.11
979 1359 3.131478 CCCTCGGCGGCGATTTTT 61.131 61.111 34.71 0.00 0.00 1.94
980 1360 1.816259 CCCTCGGCGGCGATTTTTA 60.816 57.895 34.71 11.54 0.00 1.52
981 1361 1.350665 CCTCGGCGGCGATTTTTAC 59.649 57.895 34.71 0.00 0.00 2.01
1523 1906 3.272334 CATTGCCGAGTAGCCGCC 61.272 66.667 0.00 0.00 0.00 6.13
1601 1993 5.443261 CGAGTGTAGAGTTACGTGTAAACA 58.557 41.667 0.00 0.00 32.21 2.83
1656 2049 3.965347 GCTAATCTAGTGTAGTTGGGGGA 59.035 47.826 0.00 0.00 0.00 4.81
1662 2055 0.322546 GTGTAGTTGGGGGAAGGCTG 60.323 60.000 0.00 0.00 0.00 4.85
1666 2059 1.971695 GTTGGGGGAAGGCTGAACG 60.972 63.158 0.00 0.00 0.00 3.95
1668 2061 1.710996 TTGGGGGAAGGCTGAACGAA 61.711 55.000 0.00 0.00 0.00 3.85
1720 2119 3.925379 TCTAGTGCACACATGTACAAGG 58.075 45.455 21.04 0.00 43.39 3.61
1796 2197 3.557898 GCTGTCTGAAATCTGGACTGGAA 60.558 47.826 0.00 0.00 32.28 3.53
1800 2201 1.339055 TGAAATCTGGACTGGAAGCCG 60.339 52.381 0.00 0.00 37.60 5.52
1802 2203 0.693049 AATCTGGACTGGAAGCCGTT 59.307 50.000 0.00 0.00 37.60 4.44
1806 2207 1.671379 GGACTGGAAGCCGTTGTCC 60.671 63.158 0.00 0.00 40.05 4.02
1816 2217 1.958902 GCCGTTGTCCCCCGTGTATA 61.959 60.000 0.00 0.00 0.00 1.47
1845 2246 3.468140 GGTCCCACGAGGCCTACC 61.468 72.222 4.42 4.38 34.51 3.18
1857 2269 1.220749 GCCTACCGTCCTGCAATGA 59.779 57.895 0.00 0.00 0.00 2.57
1864 2276 1.399440 CCGTCCTGCAATGAGATGTTG 59.601 52.381 0.00 0.00 0.00 3.33
1887 2299 1.006825 TGACGAAATGACGTGCCGAG 61.007 55.000 0.00 0.00 46.52 4.63
1890 2302 1.006825 CGAAATGACGTGCCGAGTGA 61.007 55.000 0.00 0.00 0.00 3.41
1919 2331 2.903855 CTTAGCCATGCGCCCCTG 60.904 66.667 4.18 0.00 38.78 4.45
1927 2339 1.547675 CCATGCGCCCCTGGTATTAAT 60.548 52.381 4.18 0.00 0.00 1.40
1939 2432 5.105513 CCCTGGTATTAATTCGGTTGCTTTT 60.106 40.000 0.00 0.00 0.00 2.27
1978 2471 6.793492 AAAAGAGTAAGTTGCTTCTGCTAG 57.207 37.500 0.00 0.00 40.48 3.42
2012 2505 3.561120 TTGTGGCGGTAGCTTGGGG 62.561 63.158 0.00 0.00 44.37 4.96
2107 2606 5.521906 GGAGAGACCTTTTTCAGCTTTTT 57.478 39.130 0.00 0.00 35.41 1.94
2333 2832 4.336581 CGAAGCCGCCGATTGATA 57.663 55.556 0.00 0.00 0.00 2.15
2343 2842 4.347813 CCGCCGATTGATAATTCGTTTTT 58.652 39.130 0.00 0.00 0.00 1.94
2417 2917 2.222592 CGACATATTCGTTCCGGGC 58.777 57.895 0.00 0.00 43.24 6.13
2456 2957 0.855349 CGGATAAGCAAGCGCAGTAG 59.145 55.000 11.47 0.00 42.27 2.57
2457 2958 1.536072 CGGATAAGCAAGCGCAGTAGA 60.536 52.381 11.47 0.00 42.27 2.59
2458 2959 2.550978 GGATAAGCAAGCGCAGTAGAA 58.449 47.619 11.47 0.00 42.27 2.10
2459 2960 3.134458 GGATAAGCAAGCGCAGTAGAAT 58.866 45.455 11.47 0.00 42.27 2.40
2460 2961 3.185391 GGATAAGCAAGCGCAGTAGAATC 59.815 47.826 11.47 5.69 42.27 2.52
2513 3014 1.597027 CGGGTCCGTATCCAATGCC 60.597 63.158 0.55 0.00 34.35 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 56 5.623673 ACTTCGTTTGAAAATATTGTCACGC 59.376 36.000 7.88 3.64 32.66 5.34
60 71 7.042925 CCTCGGGTTTTAGATATACTTCGTTTG 60.043 40.741 0.00 0.00 0.00 2.93
67 78 9.819754 AGTAATACCTCGGGTTTTAGATATACT 57.180 33.333 0.72 0.00 37.09 2.12
68 79 9.852091 CAGTAATACCTCGGGTTTTAGATATAC 57.148 37.037 0.72 0.00 37.09 1.47
124 136 1.656441 GCGCCAATGCAGGAATAGG 59.344 57.895 0.00 0.00 37.32 2.57
171 183 1.414181 GATTTCCTGGATCTCCTGCGA 59.586 52.381 0.00 0.00 36.82 5.10
194 206 0.400213 TTTCTCCGCCATGTTGGACT 59.600 50.000 0.00 0.00 40.96 3.85
195 207 1.243902 TTTTCTCCGCCATGTTGGAC 58.756 50.000 0.00 0.00 40.96 4.02
325 337 1.727335 GAAACGGCGAGGAAGAAGAAG 59.273 52.381 16.62 0.00 0.00 2.85
409 421 1.473677 TGAGAATCATTGGGCAAAGCG 59.526 47.619 0.00 0.00 42.56 4.68
425 438 0.173255 TTCGATCATGCGTGCTGAGA 59.827 50.000 0.00 0.00 0.00 3.27
427 440 0.932399 CATTCGATCATGCGTGCTGA 59.068 50.000 0.00 0.00 0.00 4.26
535 548 1.177401 CGAGTGAGTGAGTGGGATCA 58.823 55.000 0.00 0.00 0.00 2.92
536 549 0.179124 GCGAGTGAGTGAGTGGGATC 60.179 60.000 0.00 0.00 0.00 3.36
537 550 1.608717 GGCGAGTGAGTGAGTGGGAT 61.609 60.000 0.00 0.00 0.00 3.85
642 701 2.668550 GCCCACGGTTCAGTGACC 60.669 66.667 0.00 0.00 44.43 4.02
644 703 4.308458 CGGCCCACGGTTCAGTGA 62.308 66.667 0.00 0.00 44.43 3.41
730 792 4.002316 GTGTAGCTAGGGACGTCCTATAG 58.998 52.174 32.52 30.14 46.36 1.31
829 1189 3.379445 GGTGTCGCGGAGGAGGAA 61.379 66.667 6.13 0.00 0.00 3.36
934 1309 0.967887 CCGAGGTGAAGAGAGGAGCA 60.968 60.000 0.00 0.00 0.00 4.26
935 1310 0.681564 TCCGAGGTGAAGAGAGGAGC 60.682 60.000 0.00 0.00 0.00 4.70
936 1311 2.065899 ATCCGAGGTGAAGAGAGGAG 57.934 55.000 0.00 0.00 0.00 3.69
937 1312 2.534042 AATCCGAGGTGAAGAGAGGA 57.466 50.000 0.00 0.00 0.00 3.71
938 1313 4.946478 ATTAATCCGAGGTGAAGAGAGG 57.054 45.455 0.00 0.00 0.00 3.69
944 1319 4.202182 CGAGGGTTATTAATCCGAGGTGAA 60.202 45.833 0.00 0.00 0.00 3.18
979 1359 8.978472 GCCCATGGTGAAGATATTATAGTAGTA 58.022 37.037 11.73 0.00 0.00 1.82
980 1360 7.363880 CGCCCATGGTGAAGATATTATAGTAGT 60.364 40.741 11.73 0.00 34.74 2.73
981 1361 6.980978 CGCCCATGGTGAAGATATTATAGTAG 59.019 42.308 11.73 0.00 34.74 2.57
1494 1874 2.896854 GCAATGGCGCCGAGATCA 60.897 61.111 23.90 2.33 0.00 2.92
1569 1961 4.367386 AACTCTACACTCGGGTTATTCG 57.633 45.455 0.00 0.00 0.00 3.34
1570 1962 5.163713 ACGTAACTCTACACTCGGGTTATTC 60.164 44.000 0.00 0.00 0.00 1.75
1601 1993 1.596496 AATCTCCCTCCGGTGGATTT 58.404 50.000 24.22 13.02 32.74 2.17
1656 2049 0.394565 AGCAGAGTTCGTTCAGCCTT 59.605 50.000 0.00 0.00 30.68 4.35
1662 2055 2.678324 ACAGCTAAGCAGAGTTCGTTC 58.322 47.619 0.00 0.00 0.00 3.95
1720 2119 0.370273 CAATGTGCCTACGCGTCTTC 59.630 55.000 18.63 6.28 38.08 2.87
1741 2140 5.163854 GGATCGGATCAAAATAATACGCAGG 60.164 44.000 18.99 0.00 30.35 4.85
1742 2141 5.408299 TGGATCGGATCAAAATAATACGCAG 59.592 40.000 18.99 0.00 30.35 5.18
1800 2201 0.828677 AGCTATACACGGGGGACAAC 59.171 55.000 0.00 0.00 0.00 3.32
1802 2203 0.032912 TCAGCTATACACGGGGGACA 60.033 55.000 0.00 0.00 0.00 4.02
1845 2246 2.079158 ACAACATCTCATTGCAGGACG 58.921 47.619 0.00 0.00 0.00 4.79
1857 2269 5.204833 CGTCATTTCGTCAAAACAACATCT 58.795 37.500 0.00 0.00 0.00 2.90
1864 2276 2.041244 GGCACGTCATTTCGTCAAAAC 58.959 47.619 0.00 0.00 42.27 2.43
1887 2299 2.131183 GCTAAGCATCGATCTGGTCAC 58.869 52.381 0.00 0.00 0.00 3.67
1890 2302 1.123077 TGGCTAAGCATCGATCTGGT 58.877 50.000 0.00 0.00 0.00 4.00
1917 2329 6.183360 GCAAAAAGCAACCGAATTAATACCAG 60.183 38.462 0.00 0.00 44.79 4.00
1919 2331 6.089920 GCAAAAAGCAACCGAATTAATACC 57.910 37.500 0.00 0.00 44.79 2.73
1954 2447 6.992715 TCTAGCAGAAGCAACTTACTCTTTTT 59.007 34.615 0.00 0.00 45.49 1.94
1955 2448 6.525629 TCTAGCAGAAGCAACTTACTCTTTT 58.474 36.000 0.00 0.00 45.49 2.27
1956 2449 6.102897 TCTAGCAGAAGCAACTTACTCTTT 57.897 37.500 0.00 0.00 45.49 2.52
1957 2450 5.730296 TCTAGCAGAAGCAACTTACTCTT 57.270 39.130 0.00 0.00 45.49 2.85
1958 2451 5.930837 ATCTAGCAGAAGCAACTTACTCT 57.069 39.130 0.00 0.00 45.49 3.24
1959 2452 6.674278 GCAAATCTAGCAGAAGCAACTTACTC 60.674 42.308 0.00 0.00 45.49 2.59
1960 2453 5.123027 GCAAATCTAGCAGAAGCAACTTACT 59.877 40.000 0.00 0.00 45.49 2.24
1961 2454 5.327891 GCAAATCTAGCAGAAGCAACTTAC 58.672 41.667 0.00 0.00 45.49 2.34
1962 2455 4.396166 GGCAAATCTAGCAGAAGCAACTTA 59.604 41.667 0.00 0.00 45.49 2.24
1963 2456 3.192212 GGCAAATCTAGCAGAAGCAACTT 59.808 43.478 0.00 0.00 45.49 2.66
1964 2457 2.751806 GGCAAATCTAGCAGAAGCAACT 59.248 45.455 0.00 0.00 45.49 3.16
1965 2458 2.159324 GGGCAAATCTAGCAGAAGCAAC 60.159 50.000 0.00 0.00 45.49 4.17
1966 2459 2.094675 GGGCAAATCTAGCAGAAGCAA 58.905 47.619 0.00 0.00 45.49 3.91
1967 2460 1.683011 GGGGCAAATCTAGCAGAAGCA 60.683 52.381 0.00 0.00 45.49 3.91
1968 2461 1.028130 GGGGCAAATCTAGCAGAAGC 58.972 55.000 0.00 0.00 42.56 3.86
1969 2462 2.295885 CAGGGGCAAATCTAGCAGAAG 58.704 52.381 0.00 0.00 0.00 2.85
1970 2463 1.064463 CCAGGGGCAAATCTAGCAGAA 60.064 52.381 0.00 0.00 0.00 3.02
1971 2464 0.548031 CCAGGGGCAAATCTAGCAGA 59.452 55.000 0.00 0.00 0.00 4.26
1972 2465 0.257039 ACCAGGGGCAAATCTAGCAG 59.743 55.000 0.00 0.00 0.00 4.24
1973 2466 1.590591 TACCAGGGGCAAATCTAGCA 58.409 50.000 0.00 0.00 0.00 3.49
1974 2467 2.959465 ATACCAGGGGCAAATCTAGC 57.041 50.000 0.00 0.00 0.00 3.42
1975 2468 4.339247 CACAAATACCAGGGGCAAATCTAG 59.661 45.833 0.00 0.00 0.00 2.43
1976 2469 4.277476 CACAAATACCAGGGGCAAATCTA 58.723 43.478 0.00 0.00 0.00 1.98
1977 2470 3.099141 CACAAATACCAGGGGCAAATCT 58.901 45.455 0.00 0.00 0.00 2.40
1978 2471 2.168313 CCACAAATACCAGGGGCAAATC 59.832 50.000 0.00 0.00 0.00 2.17
2012 2505 4.214327 CCGCGCTTCTCCTCCTCC 62.214 72.222 5.56 0.00 0.00 4.30
2037 2535 2.803155 CTTGCTTAGCCCACGCTCCA 62.803 60.000 0.29 0.00 43.95 3.86
2038 2536 2.046314 TTGCTTAGCCCACGCTCC 60.046 61.111 0.29 0.00 43.95 4.70
2039 2537 2.109126 CCTTGCTTAGCCCACGCTC 61.109 63.158 0.29 0.00 43.95 5.03
2041 2539 3.134127 CCCTTGCTTAGCCCACGC 61.134 66.667 0.29 0.00 0.00 5.34
2042 2540 3.134127 GCCCTTGCTTAGCCCACG 61.134 66.667 0.29 0.00 33.53 4.94
2056 2554 2.515290 CCCGTACCGAAATGGCCC 60.515 66.667 0.00 0.00 43.94 5.80
2072 2570 1.202817 GTCTCTCCTTGTCGTCTTCCC 59.797 57.143 0.00 0.00 0.00 3.97
2107 2606 0.738975 CGCACGAGAGGATTAGACCA 59.261 55.000 0.00 0.00 0.00 4.02
2201 2700 4.759205 GCCACCATCCACCCCCAC 62.759 72.222 0.00 0.00 0.00 4.61
2235 2734 4.678269 CGCACGGTCACGAGACGT 62.678 66.667 6.91 5.88 45.92 4.34
2277 2776 3.006217 TCAGCTCATCCGTGGAATATCTG 59.994 47.826 0.00 0.00 0.00 2.90
2319 2818 1.148310 CGAATTATCAATCGGCGGCT 58.852 50.000 7.21 0.00 35.49 5.52
2321 2820 3.602390 AAACGAATTATCAATCGGCGG 57.398 42.857 7.21 0.00 43.11 6.13
2322 2821 4.436523 GGAAAAACGAATTATCAATCGGCG 59.563 41.667 0.00 0.00 43.11 6.46
2323 2822 4.436523 CGGAAAAACGAATTATCAATCGGC 59.563 41.667 0.00 0.00 43.11 5.54
2324 2823 4.967575 CCGGAAAAACGAATTATCAATCGG 59.032 41.667 0.00 0.00 43.11 4.18
2325 2824 4.967575 CCCGGAAAAACGAATTATCAATCG 59.032 41.667 0.73 0.00 44.33 3.34
2326 2825 5.278604 CCCCGGAAAAACGAATTATCAATC 58.721 41.667 0.73 0.00 35.47 2.67
2327 2826 4.440940 GCCCCGGAAAAACGAATTATCAAT 60.441 41.667 0.73 0.00 35.47 2.57
2328 2827 3.119424 GCCCCGGAAAAACGAATTATCAA 60.119 43.478 0.73 0.00 35.47 2.57
2329 2828 2.424246 GCCCCGGAAAAACGAATTATCA 59.576 45.455 0.73 0.00 35.47 2.15
2330 2829 2.223641 GGCCCCGGAAAAACGAATTATC 60.224 50.000 0.73 0.00 35.47 1.75
2331 2830 1.752498 GGCCCCGGAAAAACGAATTAT 59.248 47.619 0.73 0.00 35.47 1.28
2332 2831 1.175654 GGCCCCGGAAAAACGAATTA 58.824 50.000 0.73 0.00 35.47 1.40
2333 2832 1.868987 CGGCCCCGGAAAAACGAATT 61.869 55.000 0.73 0.00 35.47 2.17
2360 2859 2.705220 CGTGTGCATGGCGAGATG 59.295 61.111 0.00 0.00 0.00 2.90
2447 2948 3.377485 TCTTTCTACGATTCTACTGCGCT 59.623 43.478 9.73 0.00 0.00 5.92
2456 2957 2.889852 ACGGCCTTCTTTCTACGATTC 58.110 47.619 0.00 0.00 0.00 2.52
2457 2958 3.733077 CGTACGGCCTTCTTTCTACGATT 60.733 47.826 7.57 0.00 30.86 3.34
2458 2959 2.223433 CGTACGGCCTTCTTTCTACGAT 60.223 50.000 7.57 0.00 30.86 3.73
2459 2960 1.131126 CGTACGGCCTTCTTTCTACGA 59.869 52.381 7.57 0.00 30.86 3.43
2460 2961 1.135575 ACGTACGGCCTTCTTTCTACG 60.136 52.381 21.06 0.00 34.54 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.