Multiple sequence alignment - TraesCS5B01G382600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G382600 chr5B 100.000 5142 0 0 1 5142 561065925 561060784 0.000000e+00 9496.0
1 TraesCS5B01G382600 chr5B 87.649 1757 198 12 2580 4334 560730781 560729042 0.000000e+00 2025.0
2 TraesCS5B01G382600 chr5B 84.398 1064 108 44 1289 2315 560444248 560443206 0.000000e+00 992.0
3 TraesCS5B01G382600 chr5B 87.839 847 74 21 1676 2508 560731742 560730911 0.000000e+00 966.0
4 TraesCS5B01G382600 chr5B 86.812 781 103 0 3366 4146 560442216 560441436 0.000000e+00 872.0
5 TraesCS5B01G382600 chr5B 85.756 688 96 2 2583 3269 560443002 560442316 0.000000e+00 726.0
6 TraesCS5B01G382600 chr5B 84.764 571 60 16 1018 1588 560732449 560731906 9.730000e-152 547.0
7 TraesCS5B01G382600 chr5B 98.969 291 3 0 4852 5142 680435817 680435527 5.900000e-144 521.0
8 TraesCS5B01G382600 chr5B 98.625 291 4 0 4852 5142 338629730 338630020 2.750000e-142 516.0
9 TraesCS5B01G382600 chr5B 82.597 362 51 11 4497 4854 560728549 560728196 5.000000e-80 309.0
10 TraesCS5B01G382600 chr5B 87.975 158 16 2 1055 1212 560444634 560444480 3.160000e-42 183.0
11 TraesCS5B01G382600 chr5D 93.379 2492 109 30 2377 4847 458181790 458179334 0.000000e+00 3637.0
12 TraesCS5B01G382600 chr5D 94.632 1863 49 19 492 2321 458183738 458181894 0.000000e+00 2839.0
13 TraesCS5B01G382600 chr5D 84.507 1065 111 43 1289 2322 458097591 458096550 0.000000e+00 1003.0
14 TraesCS5B01G382600 chr5D 86.839 775 102 0 3366 4140 458095566 458094792 0.000000e+00 867.0
15 TraesCS5B01G382600 chr5D 82.253 879 140 11 2398 3269 458096554 458095685 0.000000e+00 745.0
16 TraesCS5B01G382600 chr5D 87.131 474 43 5 1 466 458184299 458183836 5.900000e-144 521.0
17 TraesCS5B01G382600 chr5D 79.630 594 81 29 1367 1931 537224914 537224332 1.740000e-104 390.0
18 TraesCS5B01G382600 chr5D 87.975 158 16 2 1055 1212 458098041 458097887 3.160000e-42 183.0
19 TraesCS5B01G382600 chr5D 87.500 64 5 2 4708 4771 260858106 260858046 2.570000e-08 71.3
20 TraesCS5B01G382600 chr5A 90.687 2255 158 28 2380 4624 576086600 576084388 0.000000e+00 2953.0
21 TraesCS5B01G382600 chr5A 91.174 2130 141 24 2377 4500 576270828 576272916 0.000000e+00 2848.0
22 TraesCS5B01G382600 chr5A 88.839 1774 173 13 2565 4334 575902597 575900845 0.000000e+00 2156.0
23 TraesCS5B01G382600 chr5A 90.247 1661 95 32 722 2341 576088423 576086789 0.000000e+00 2108.0
24 TraesCS5B01G382600 chr5A 84.315 1562 223 15 2583 4140 575707584 575706041 0.000000e+00 1507.0
25 TraesCS5B01G382600 chr5A 85.204 1176 116 37 1360 2508 575903841 575902697 0.000000e+00 1155.0
26 TraesCS5B01G382600 chr5A 84.717 1060 111 42 1289 2316 575708810 575707770 0.000000e+00 1013.0
27 TraesCS5B01G382600 chr5A 91.746 630 32 8 863 1478 576268957 576269580 0.000000e+00 857.0
28 TraesCS5B01G382600 chr5A 94.737 361 14 3 1986 2341 576270282 576270642 1.620000e-154 556.0
29 TraesCS5B01G382600 chr5A 85.372 417 51 8 4050 4462 575900541 575900131 1.710000e-114 424.0
30 TraesCS5B01G382600 chr5A 93.220 236 10 3 4621 4855 576073221 576072991 4.930000e-90 342.0
31 TraesCS5B01G382600 chr5A 83.516 182 22 5 265 439 576266177 576266357 4.120000e-36 163.0
32 TraesCS5B01G382600 chr5A 78.846 208 19 13 265 466 576089478 576089290 3.250000e-22 117.0
33 TraesCS5B01G382600 chr4A 83.355 781 130 0 3366 4146 632944752 632943972 0.000000e+00 723.0
34 TraesCS5B01G382600 chr4A 84.862 687 104 0 2583 3269 632945530 632944844 0.000000e+00 693.0
35 TraesCS5B01G382600 chr4A 98.625 291 4 0 4852 5142 659030505 659030215 2.750000e-142 516.0
36 TraesCS5B01G382600 chr4B 98.625 291 4 0 4852 5142 142396297 142396007 2.750000e-142 516.0
37 TraesCS5B01G382600 chr4B 98.282 291 5 0 4852 5142 662737532 662737822 1.280000e-140 510.0
38 TraesCS5B01G382600 chr4B 83.175 315 47 6 1277 1588 27248789 27249100 3.030000e-72 283.0
39 TraesCS5B01G382600 chr4B 83.444 302 46 4 1289 1588 27522693 27522394 1.410000e-70 278.0
40 TraesCS5B01G382600 chr4B 86.175 217 30 0 1674 1890 27249687 27249903 8.610000e-58 235.0
41 TraesCS5B01G382600 chr4B 86.175 217 30 0 1674 1890 27521793 27521577 8.610000e-58 235.0
42 TraesCS5B01G382600 chr3B 98.625 291 4 0 4852 5142 15827061 15827351 2.750000e-142 516.0
43 TraesCS5B01G382600 chr3B 98.625 291 4 0 4852 5142 815140914 815141204 2.750000e-142 516.0
44 TraesCS5B01G382600 chr1B 98.625 291 3 1 4852 5142 30916088 30915799 9.870000e-142 514.0
45 TraesCS5B01G382600 chr1D 98.282 291 5 0 4852 5142 209771454 209771744 1.280000e-140 510.0
46 TraesCS5B01G382600 chr6B 90.909 55 5 0 1151 1205 164357620 164357674 1.990000e-09 75.0
47 TraesCS5B01G382600 chr6A 89.091 55 6 0 1151 1205 104355415 104355469 9.240000e-08 69.4
48 TraesCS5B01G382600 chr6A 89.091 55 6 0 1151 1205 104448041 104447987 9.240000e-08 69.4
49 TraesCS5B01G382600 chr7B 96.875 32 1 0 4745 4776 708449122 708449091 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G382600 chr5B 561060784 561065925 5141 True 9496.000000 9496 100.000000 1 5142 1 chr5B.!!$R1 5141
1 TraesCS5B01G382600 chr5B 560728196 560732449 4253 True 961.750000 2025 85.712250 1018 4854 4 chr5B.!!$R4 3836
2 TraesCS5B01G382600 chr5B 560441436 560444634 3198 True 693.250000 992 86.235250 1055 4146 4 chr5B.!!$R3 3091
3 TraesCS5B01G382600 chr5D 458179334 458184299 4965 True 2332.333333 3637 91.714000 1 4847 3 chr5D.!!$R4 4846
4 TraesCS5B01G382600 chr5D 458094792 458098041 3249 True 699.500000 1003 85.393500 1055 4140 4 chr5D.!!$R3 3085
5 TraesCS5B01G382600 chr5D 537224332 537224914 582 True 390.000000 390 79.630000 1367 1931 1 chr5D.!!$R2 564
6 TraesCS5B01G382600 chr5A 576084388 576089478 5090 True 1726.000000 2953 86.593333 265 4624 3 chr5A.!!$R4 4359
7 TraesCS5B01G382600 chr5A 575706041 575708810 2769 True 1260.000000 1507 84.516000 1289 4140 2 chr5A.!!$R2 2851
8 TraesCS5B01G382600 chr5A 575900131 575903841 3710 True 1245.000000 2156 86.471667 1360 4462 3 chr5A.!!$R3 3102
9 TraesCS5B01G382600 chr5A 576266177 576272916 6739 False 1106.000000 2848 90.293250 265 4500 4 chr5A.!!$F1 4235
10 TraesCS5B01G382600 chr4A 632943972 632945530 1558 True 708.000000 723 84.108500 2583 4146 2 chr4A.!!$R2 1563
11 TraesCS5B01G382600 chr4B 27248789 27249903 1114 False 259.000000 283 84.675000 1277 1890 2 chr4B.!!$F2 613
12 TraesCS5B01G382600 chr4B 27521577 27522693 1116 True 256.500000 278 84.809500 1289 1890 2 chr4B.!!$R2 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
925 3443 0.109504 GTCGAGAGCTCTCACACCAC 60.110 60.000 36.27 22.1 43.00 4.16 F
984 3502 0.179171 TTCTCCGTCTTAGAAGCGCG 60.179 55.000 0.00 0.0 0.00 6.86 F
1345 4121 1.222936 CCTGGAGCAGTGGATCACC 59.777 63.158 0.00 0.0 34.49 4.02 F
1920 5310 0.179150 AGTGCGTTCATCTCTCTCGC 60.179 55.000 0.00 0.0 45.70 5.03 F
3406 7123 1.077787 CCCATCTAGCCCGCACAAA 60.078 57.895 0.00 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1917 5307 1.002544 TGAGTGTGAGAGAGAGAGCGA 59.997 52.381 0.00 0.0 0.00 4.93 R
1918 5308 1.130373 GTGAGTGTGAGAGAGAGAGCG 59.870 57.143 0.00 0.0 0.00 5.03 R
2386 5970 1.452953 TTCTCGTCCTCTGCACGTGT 61.453 55.000 18.38 0.0 38.45 4.49 R
3607 7324 0.174845 CCGCCACCGTCTTCATCTTA 59.825 55.000 0.00 0.0 0.00 2.10 R
5068 9725 0.031857 CCGCTTTGATGCAACAACCA 59.968 50.000 9.14 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.626623 GCTTGATAACTTCTGCCAAACATCAT 60.627 38.462 0.00 0.00 0.00 2.45
85 86 0.465097 CATCAAGCCTTCCGCCATCT 60.465 55.000 0.00 0.00 38.78 2.90
97 98 2.456119 GCCATCTTGCACGGACGAG 61.456 63.158 0.00 0.00 0.00 4.18
98 99 1.811266 CCATCTTGCACGGACGAGG 60.811 63.158 0.00 0.00 0.00 4.63
99 100 1.079819 CATCTTGCACGGACGAGGT 60.080 57.895 0.00 0.00 0.00 3.85
100 101 1.079819 ATCTTGCACGGACGAGGTG 60.080 57.895 0.00 0.00 38.42 4.00
101 102 1.816863 ATCTTGCACGGACGAGGTGT 61.817 55.000 0.00 0.00 37.70 4.16
110 111 1.970114 GACGAGGTGTCCCGACTCA 60.970 63.158 0.00 0.00 42.04 3.41
117 118 0.798776 GTGTCCCGACTCATGCAAAG 59.201 55.000 0.00 0.00 0.00 2.77
126 127 1.651240 CTCATGCAAAGCCCCTGACG 61.651 60.000 0.00 0.00 0.00 4.35
134 135 0.250338 AAGCCCCTGACGTTTGTCTC 60.250 55.000 0.00 0.00 45.70 3.36
139 140 1.202651 CCCTGACGTTTGTCTCTGGTT 60.203 52.381 0.00 0.00 45.70 3.67
142 143 3.194861 CTGACGTTTGTCTCTGGTTTGA 58.805 45.455 0.00 0.00 45.70 2.69
143 144 3.601435 TGACGTTTGTCTCTGGTTTGAA 58.399 40.909 0.00 0.00 45.70 2.69
171 174 2.098831 GCGTCTAAACCACTCGGCC 61.099 63.158 0.00 0.00 34.57 6.13
175 178 0.899720 TCTAAACCACTCGGCCGATT 59.100 50.000 31.19 22.03 34.57 3.34
180 183 1.048601 ACCACTCGGCCGATTGATAT 58.951 50.000 38.17 23.65 34.57 1.63
181 184 1.416401 ACCACTCGGCCGATTGATATT 59.584 47.619 38.17 20.61 34.57 1.28
183 186 2.483876 CACTCGGCCGATTGATATTGT 58.516 47.619 34.73 21.26 0.00 2.71
188 191 0.517316 GCCGATTGATATTGTCCCGC 59.483 55.000 0.00 0.00 0.00 6.13
193 196 1.374560 TTGATATTGTCCCGCGTTGG 58.625 50.000 4.92 0.00 37.55 3.77
196 199 2.365941 TGATATTGTCCCGCGTTGGATA 59.634 45.455 4.92 0.23 42.00 2.59
210 213 2.873472 GTTGGATAACACAACACGTCCA 59.127 45.455 3.65 0.00 45.62 4.02
222 225 0.535102 CACGTCCAAAAGCAGGGTCT 60.535 55.000 0.00 0.00 0.00 3.85
224 227 1.002087 ACGTCCAAAAGCAGGGTCTAG 59.998 52.381 0.00 0.00 0.00 2.43
229 232 2.069273 CAAAAGCAGGGTCTAGACGTG 58.931 52.381 16.56 16.29 0.00 4.49
243 246 4.659874 CGTGTGCGGACGGTTTGC 62.660 66.667 1.60 0.00 35.65 3.68
250 253 4.974989 GGACGGTTTGCGGGTCGT 62.975 66.667 0.00 0.00 38.62 4.34
262 265 1.076533 CGGGTCGTCGTTGAAGATGG 61.077 60.000 0.00 0.00 0.00 3.51
291 294 6.097412 AGCCAATTTTACTCATCCAAATCCTC 59.903 38.462 0.00 0.00 0.00 3.71
293 296 6.460123 CCAATTTTACTCATCCAAATCCTCCG 60.460 42.308 0.00 0.00 0.00 4.63
321 324 2.593346 ATGCGAGCAACCAAACAAAA 57.407 40.000 0.57 0.00 0.00 2.44
332 335 3.584834 ACCAAACAAAACAGTTGCTGTC 58.415 40.909 2.04 0.00 44.62 3.51
441 456 1.264749 TATGCTGGTCCCAAGTCGCT 61.265 55.000 0.00 0.00 0.00 4.93
442 457 2.032681 GCTGGTCCCAAGTCGCTT 59.967 61.111 0.00 0.00 0.00 4.68
452 471 2.200067 CCAAGTCGCTTGCATAGAGAG 58.800 52.381 12.35 0.00 39.85 3.20
453 472 2.159184 CCAAGTCGCTTGCATAGAGAGA 60.159 50.000 12.35 0.00 39.85 3.10
455 474 2.649190 AGTCGCTTGCATAGAGAGAGA 58.351 47.619 0.00 0.00 33.04 3.10
456 475 3.221771 AGTCGCTTGCATAGAGAGAGAT 58.778 45.455 0.00 0.00 33.04 2.75
457 476 3.004629 AGTCGCTTGCATAGAGAGAGATG 59.995 47.826 0.00 0.00 33.04 2.90
459 478 2.035704 CGCTTGCATAGAGAGAGATGGT 59.964 50.000 0.00 0.00 0.00 3.55
463 482 1.934399 GCATAGAGAGAGATGGTGCGC 60.934 57.143 0.00 0.00 0.00 6.09
514 602 2.029380 TCCAAGCTTGAACTCGATCGAA 60.029 45.455 28.05 0.46 0.00 3.71
520 608 4.634883 AGCTTGAACTCGATCGAACTACTA 59.365 41.667 19.92 7.14 0.00 1.82
568 669 0.899720 GAGGTCATTCCACGTGGGTA 59.100 55.000 33.40 21.99 39.02 3.69
739 846 4.202545 ACGTAGCTACTCCCCTGTATACAT 60.203 45.833 21.20 0.00 0.00 2.29
741 848 5.942236 CGTAGCTACTCCCCTGTATACATTA 59.058 44.000 21.20 0.00 0.00 1.90
743 850 5.966684 AGCTACTCCCCTGTATACATTAGT 58.033 41.667 5.91 9.74 0.00 2.24
744 851 7.100068 AGCTACTCCCCTGTATACATTAGTA 57.900 40.000 5.91 10.29 34.10 1.82
763 871 5.263872 AGTACGATCTTATCCTGATCCCT 57.736 43.478 0.00 0.00 37.59 4.20
788 896 9.888878 CTTGATAATCAAATCGATTTGCAGTAT 57.111 29.630 35.42 29.66 41.83 2.12
804 912 9.926158 ATTTGCAGTATTATCAAATCAAACACA 57.074 25.926 0.00 0.00 36.10 3.72
904 3422 4.699925 TCTATAAATAGCCCGGTTGCTT 57.300 40.909 10.63 0.00 42.75 3.91
925 3443 0.109504 GTCGAGAGCTCTCACACCAC 60.110 60.000 36.27 22.10 43.00 4.16
983 3501 1.654602 GTTTCTCCGTCTTAGAAGCGC 59.345 52.381 0.00 0.00 34.59 5.92
984 3502 0.179171 TTCTCCGTCTTAGAAGCGCG 60.179 55.000 0.00 0.00 0.00 6.86
992 3518 2.534264 CTTAGAAGCGCGCACACACG 62.534 60.000 35.10 13.39 0.00 4.49
1345 4121 1.222936 CCTGGAGCAGTGGATCACC 59.777 63.158 0.00 0.00 34.49 4.02
1621 4931 3.200483 TCGATGTCTTCAATGGATGCAG 58.800 45.455 0.00 0.00 0.00 4.41
1657 5041 7.878036 TGCTTGTCCACTTATTTAAGTAAACC 58.122 34.615 2.79 0.00 44.19 3.27
1914 5304 1.873591 ACAAACCAGTGCGTTCATCTC 59.126 47.619 0.00 0.00 0.00 2.75
1915 5305 2.146342 CAAACCAGTGCGTTCATCTCT 58.854 47.619 0.00 0.00 0.00 3.10
1916 5306 2.086054 AACCAGTGCGTTCATCTCTC 57.914 50.000 0.00 0.00 0.00 3.20
1917 5307 1.261480 ACCAGTGCGTTCATCTCTCT 58.739 50.000 0.00 0.00 0.00 3.10
1918 5308 1.203523 ACCAGTGCGTTCATCTCTCTC 59.796 52.381 0.00 0.00 0.00 3.20
1919 5309 1.543614 CAGTGCGTTCATCTCTCTCG 58.456 55.000 0.00 0.00 0.00 4.04
1920 5310 0.179150 AGTGCGTTCATCTCTCTCGC 60.179 55.000 0.00 0.00 45.70 5.03
1928 5323 3.111853 TCATCTCTCTCGCTCTCTCTC 57.888 52.381 0.00 0.00 0.00 3.20
1931 5326 2.107366 TCTCTCTCGCTCTCTCTCTCA 58.893 52.381 0.00 0.00 0.00 3.27
2375 5807 7.856415 AGTTAATTCTTGTCTGGATAAGAGCT 58.144 34.615 9.13 0.00 39.23 4.09
2386 5970 8.704668 TGTCTGGATAAGAGCTGATTATTTACA 58.295 33.333 0.00 0.00 34.84 2.41
2526 6191 6.699575 ATATCCATCGGCCAAATTATAAGC 57.300 37.500 2.24 0.00 0.00 3.09
2528 6193 4.406456 TCCATCGGCCAAATTATAAGCAT 58.594 39.130 2.24 0.00 0.00 3.79
2529 6194 4.458989 TCCATCGGCCAAATTATAAGCATC 59.541 41.667 2.24 0.00 0.00 3.91
2530 6195 4.406069 CATCGGCCAAATTATAAGCATCG 58.594 43.478 2.24 0.00 0.00 3.84
2531 6196 2.811431 TCGGCCAAATTATAAGCATCGG 59.189 45.455 2.24 0.00 0.00 4.18
2532 6197 2.552315 CGGCCAAATTATAAGCATCGGT 59.448 45.455 2.24 0.00 0.00 4.69
2533 6198 3.609175 CGGCCAAATTATAAGCATCGGTG 60.609 47.826 2.24 0.00 0.00 4.94
2563 6228 8.823220 AGCATGGACTAAACTAATGGTAAAAT 57.177 30.769 0.00 0.00 0.00 1.82
2865 6530 2.264166 GAGCTGAGCACGCCTCTT 59.736 61.111 7.39 0.00 41.35 2.85
2869 6534 1.515952 CTGAGCACGCCTCTTCTCG 60.516 63.158 5.44 0.00 41.35 4.04
3084 6749 2.906897 CACCCGGTGCACAAGCTT 60.907 61.111 20.43 0.00 42.74 3.74
3310 6977 6.672266 TTCTTCTATATAGGGAGCAGGTTG 57.328 41.667 9.89 0.00 0.00 3.77
3353 7020 5.357742 TCAGTTAGTGACATGCATGGTAT 57.642 39.130 29.41 14.95 0.00 2.73
3359 7027 7.445402 AGTTAGTGACATGCATGGTATTAATCC 59.555 37.037 29.41 13.25 0.00 3.01
3406 7123 1.077787 CCCATCTAGCCCGCACAAA 60.078 57.895 0.00 0.00 0.00 2.83
3508 7225 6.392625 GAGTATCTTGCCATCTACTACACA 57.607 41.667 0.00 0.00 0.00 3.72
3776 7493 1.749638 CCGGACAGCGAGGAGTACT 60.750 63.158 0.00 0.00 0.00 2.73
3778 7495 1.025113 CGGACAGCGAGGAGTACTCA 61.025 60.000 23.91 0.00 46.98 3.41
3966 7683 2.677003 CGTTCAAGCGGTTCGGCAT 61.677 57.895 0.00 0.00 34.64 4.40
4054 7771 2.587889 CCGGCCCAGTTTCCGTAT 59.412 61.111 0.00 0.00 43.87 3.06
4140 7857 1.770658 CCCCAACAGCATCTCCATCTA 59.229 52.381 0.00 0.00 0.00 1.98
4158 7875 8.143673 TCCATCTAATGAGATATTTGGAGGAG 57.856 38.462 0.00 0.00 40.68 3.69
4159 7876 6.822676 CCATCTAATGAGATATTTGGAGGAGC 59.177 42.308 0.00 0.00 40.68 4.70
4160 7877 7.392418 CATCTAATGAGATATTTGGAGGAGCA 58.608 38.462 0.00 0.00 40.68 4.26
4183 8489 2.202570 GCTCGCCAGCATGCAAAG 60.203 61.111 21.98 8.91 46.06 2.77
4203 8509 4.025401 GTTGGGGTGCGTGCTTCG 62.025 66.667 0.00 0.00 43.12 3.79
4273 8580 1.621814 AGTGTTATGTGCGTGGGTAGT 59.378 47.619 0.00 0.00 0.00 2.73
4276 8583 2.268298 GTTATGTGCGTGGGTAGTCAG 58.732 52.381 0.00 0.00 0.00 3.51
4304 8622 9.301153 GGTCAATGTATGTTCCATGTAATTTTC 57.699 33.333 0.00 0.00 0.00 2.29
4354 8672 7.775120 AGTGATGGGTTATGCTTCTTTTAATG 58.225 34.615 0.00 0.00 0.00 1.90
4363 8681 9.346725 GTTATGCTTCTTTTAATGGAAAGAGTG 57.653 33.333 4.54 4.11 44.05 3.51
4505 9158 1.137404 GCCCTTGTGCTAATGTGCG 59.863 57.895 0.00 0.00 35.36 5.34
4519 9172 2.380084 TGTGCGTAGAATTGGAGACC 57.620 50.000 0.00 0.00 0.00 3.85
4521 9174 0.174845 TGCGTAGAATTGGAGACCGG 59.825 55.000 0.00 0.00 0.00 5.28
4573 9230 6.418057 AACATTACATTGAGAAAAAGGCCA 57.582 33.333 5.01 0.00 0.00 5.36
4653 9310 7.524717 AACATTACATGTGGTTTCTTTAGCT 57.475 32.000 9.11 0.00 44.07 3.32
4697 9354 3.132111 TGAGGGTGGTTTTCTTTTTCAGC 59.868 43.478 0.00 0.00 0.00 4.26
4699 9356 3.384789 AGGGTGGTTTTCTTTTTCAGCTC 59.615 43.478 0.00 0.00 0.00 4.09
4772 9429 8.694581 TCCACATTCATCTCATAATTGCATTA 57.305 30.769 0.00 0.00 0.00 1.90
4847 9504 5.655893 ATGCAACAAACAAAATGCTACAC 57.344 34.783 0.00 0.00 39.49 2.90
4848 9505 3.549471 TGCAACAAACAAAATGCTACACG 59.451 39.130 0.00 0.00 39.49 4.49
4854 9511 6.037098 ACAAACAAAATGCTACACGCTAAAA 58.963 32.000 0.00 0.00 40.11 1.52
4855 9512 6.020201 ACAAACAAAATGCTACACGCTAAAAC 60.020 34.615 0.00 0.00 40.11 2.43
4856 9513 4.542735 ACAAAATGCTACACGCTAAAACC 58.457 39.130 0.00 0.00 40.11 3.27
4857 9514 3.842732 AAATGCTACACGCTAAAACCC 57.157 42.857 0.00 0.00 40.11 4.11
4858 9515 1.365699 ATGCTACACGCTAAAACCCG 58.634 50.000 0.00 0.00 40.11 5.28
4859 9516 1.293267 TGCTACACGCTAAAACCCGC 61.293 55.000 0.00 0.00 40.11 6.13
4864 9521 4.454717 CGCTAAAACCCGCGCCAC 62.455 66.667 0.00 0.00 43.01 5.01
4865 9522 3.358707 GCTAAAACCCGCGCCACA 61.359 61.111 0.00 0.00 0.00 4.17
4866 9523 2.696759 GCTAAAACCCGCGCCACAT 61.697 57.895 0.00 0.00 0.00 3.21
4867 9524 1.427819 CTAAAACCCGCGCCACATC 59.572 57.895 0.00 0.00 0.00 3.06
4868 9525 1.302383 CTAAAACCCGCGCCACATCA 61.302 55.000 0.00 0.00 0.00 3.07
4869 9526 0.678366 TAAAACCCGCGCCACATCAT 60.678 50.000 0.00 0.00 0.00 2.45
4870 9527 1.531739 AAAACCCGCGCCACATCATT 61.532 50.000 0.00 0.00 0.00 2.57
4871 9528 2.211619 AAACCCGCGCCACATCATTG 62.212 55.000 0.00 0.00 0.00 2.82
4872 9529 3.891400 CCCGCGCCACATCATTGG 61.891 66.667 0.00 0.00 39.98 3.16
4880 9537 1.586422 CCACATCATTGGCTAGGACG 58.414 55.000 0.00 0.00 0.00 4.79
4881 9538 1.138859 CCACATCATTGGCTAGGACGA 59.861 52.381 0.00 0.00 0.00 4.20
4882 9539 2.419990 CCACATCATTGGCTAGGACGAA 60.420 50.000 0.00 0.00 0.00 3.85
4883 9540 3.470709 CACATCATTGGCTAGGACGAAT 58.529 45.455 0.00 0.00 0.00 3.34
4884 9541 3.249320 CACATCATTGGCTAGGACGAATG 59.751 47.826 0.00 0.00 37.17 2.67
4885 9542 2.620251 TCATTGGCTAGGACGAATGG 57.380 50.000 0.00 0.00 36.67 3.16
4886 9543 1.837439 TCATTGGCTAGGACGAATGGT 59.163 47.619 0.00 0.00 36.67 3.55
4887 9544 2.238646 TCATTGGCTAGGACGAATGGTT 59.761 45.455 0.00 0.00 36.67 3.67
4888 9545 2.396590 TTGGCTAGGACGAATGGTTC 57.603 50.000 0.00 0.00 0.00 3.62
4899 9556 2.998668 GAATGGTTCGTCTGCATACG 57.001 50.000 17.65 17.65 44.19 3.06
4900 9557 1.004927 GAATGGTTCGTCTGCATACGC 60.005 52.381 18.78 6.72 42.56 4.42
4914 9571 4.542662 GCATACGCAAGATTGTTGAGAT 57.457 40.909 4.34 0.00 43.62 2.75
4915 9572 4.521943 GCATACGCAAGATTGTTGAGATC 58.478 43.478 4.34 0.00 43.62 2.75
4916 9573 4.553547 GCATACGCAAGATTGTTGAGATCC 60.554 45.833 4.34 0.00 43.62 3.36
4917 9574 3.057969 ACGCAAGATTGTTGAGATCCA 57.942 42.857 4.34 0.00 43.62 3.41
4918 9575 2.744202 ACGCAAGATTGTTGAGATCCAC 59.256 45.455 4.34 0.00 43.62 4.02
4919 9576 3.005554 CGCAAGATTGTTGAGATCCACT 58.994 45.455 0.00 0.00 43.02 4.00
4920 9577 3.181513 CGCAAGATTGTTGAGATCCACTG 60.182 47.826 0.00 0.00 43.02 3.66
4921 9578 3.755378 GCAAGATTGTTGAGATCCACTGT 59.245 43.478 0.00 0.00 0.00 3.55
4922 9579 4.217118 GCAAGATTGTTGAGATCCACTGTT 59.783 41.667 0.00 0.00 0.00 3.16
4923 9580 5.696822 CAAGATTGTTGAGATCCACTGTTG 58.303 41.667 0.00 0.00 0.00 3.33
4924 9581 4.978099 AGATTGTTGAGATCCACTGTTGT 58.022 39.130 0.00 0.00 0.00 3.32
4925 9582 4.999950 AGATTGTTGAGATCCACTGTTGTC 59.000 41.667 0.00 0.00 0.00 3.18
4926 9583 3.836365 TGTTGAGATCCACTGTTGTCA 57.164 42.857 0.00 0.00 0.00 3.58
4927 9584 4.356405 TGTTGAGATCCACTGTTGTCAT 57.644 40.909 0.00 0.00 0.00 3.06
4928 9585 4.717877 TGTTGAGATCCACTGTTGTCATT 58.282 39.130 0.00 0.00 0.00 2.57
4929 9586 4.756642 TGTTGAGATCCACTGTTGTCATTC 59.243 41.667 0.00 0.00 0.00 2.67
4930 9587 3.942829 TGAGATCCACTGTTGTCATTCC 58.057 45.455 0.00 0.00 0.00 3.01
4931 9588 2.932614 GAGATCCACTGTTGTCATTCCG 59.067 50.000 0.00 0.00 0.00 4.30
4932 9589 2.303022 AGATCCACTGTTGTCATTCCGT 59.697 45.455 0.00 0.00 0.00 4.69
4933 9590 3.513912 AGATCCACTGTTGTCATTCCGTA 59.486 43.478 0.00 0.00 0.00 4.02
4934 9591 3.034721 TCCACTGTTGTCATTCCGTAC 57.965 47.619 0.00 0.00 0.00 3.67
4935 9592 2.631062 TCCACTGTTGTCATTCCGTACT 59.369 45.455 0.00 0.00 0.00 2.73
4936 9593 2.736721 CCACTGTTGTCATTCCGTACTG 59.263 50.000 0.00 0.00 0.00 2.74
4937 9594 2.157668 CACTGTTGTCATTCCGTACTGC 59.842 50.000 0.00 0.00 0.00 4.40
4938 9595 1.390123 CTGTTGTCATTCCGTACTGCG 59.610 52.381 0.00 0.00 40.95 5.18
4956 9613 2.125391 GGTCTTCCGTTACCCCGC 60.125 66.667 0.00 0.00 0.00 6.13
4957 9614 2.125391 GTCTTCCGTTACCCCGCC 60.125 66.667 0.00 0.00 0.00 6.13
4958 9615 2.284112 TCTTCCGTTACCCCGCCT 60.284 61.111 0.00 0.00 0.00 5.52
4959 9616 2.186125 CTTCCGTTACCCCGCCTC 59.814 66.667 0.00 0.00 0.00 4.70
4960 9617 3.711541 CTTCCGTTACCCCGCCTCG 62.712 68.421 0.00 0.00 0.00 4.63
4962 9619 4.807039 CCGTTACCCCGCCTCGTG 62.807 72.222 0.00 0.00 0.00 4.35
4963 9620 4.060038 CGTTACCCCGCCTCGTGT 62.060 66.667 0.00 0.00 0.00 4.49
4964 9621 2.125793 GTTACCCCGCCTCGTGTC 60.126 66.667 0.00 0.00 0.00 3.67
4965 9622 2.601067 TTACCCCGCCTCGTGTCA 60.601 61.111 0.00 0.00 0.00 3.58
4966 9623 1.985662 TTACCCCGCCTCGTGTCAT 60.986 57.895 0.00 0.00 0.00 3.06
4967 9624 0.683828 TTACCCCGCCTCGTGTCATA 60.684 55.000 0.00 0.00 0.00 2.15
4968 9625 0.468585 TACCCCGCCTCGTGTCATAT 60.469 55.000 0.00 0.00 0.00 1.78
4969 9626 1.335132 ACCCCGCCTCGTGTCATATT 61.335 55.000 0.00 0.00 0.00 1.28
4970 9627 0.880278 CCCCGCCTCGTGTCATATTG 60.880 60.000 0.00 0.00 0.00 1.90
4971 9628 0.104120 CCCGCCTCGTGTCATATTGA 59.896 55.000 0.00 0.00 0.00 2.57
4973 9630 1.209128 CGCCTCGTGTCATATTGACC 58.791 55.000 5.27 0.00 46.40 4.02
4974 9631 1.583054 GCCTCGTGTCATATTGACCC 58.417 55.000 5.27 0.00 46.40 4.46
4975 9632 1.134521 GCCTCGTGTCATATTGACCCA 60.135 52.381 5.27 0.00 46.40 4.51
4976 9633 2.485479 GCCTCGTGTCATATTGACCCAT 60.485 50.000 5.27 0.00 46.40 4.00
4977 9634 3.808728 CCTCGTGTCATATTGACCCATT 58.191 45.455 5.27 0.00 46.40 3.16
4978 9635 4.199310 CCTCGTGTCATATTGACCCATTT 58.801 43.478 5.27 0.00 46.40 2.32
4979 9636 4.035558 CCTCGTGTCATATTGACCCATTTG 59.964 45.833 5.27 0.00 46.40 2.32
4980 9637 3.376859 TCGTGTCATATTGACCCATTTGC 59.623 43.478 5.27 0.00 46.40 3.68
4981 9638 3.128415 CGTGTCATATTGACCCATTTGCA 59.872 43.478 5.27 0.00 46.40 4.08
4982 9639 4.423732 GTGTCATATTGACCCATTTGCAC 58.576 43.478 5.27 0.00 46.40 4.57
4983 9640 3.446873 TGTCATATTGACCCATTTGCACC 59.553 43.478 5.27 0.00 46.40 5.01
4984 9641 2.687425 TCATATTGACCCATTTGCACCG 59.313 45.455 0.00 0.00 0.00 4.94
4985 9642 2.498644 TATTGACCCATTTGCACCGA 57.501 45.000 0.00 0.00 0.00 4.69
4986 9643 1.626686 ATTGACCCATTTGCACCGAA 58.373 45.000 0.00 0.00 0.00 4.30
4987 9644 1.403814 TTGACCCATTTGCACCGAAA 58.596 45.000 0.00 0.00 0.00 3.46
4988 9645 0.671251 TGACCCATTTGCACCGAAAC 59.329 50.000 0.00 0.00 0.00 2.78
4989 9646 0.671251 GACCCATTTGCACCGAAACA 59.329 50.000 0.00 0.00 0.00 2.83
4990 9647 1.067821 GACCCATTTGCACCGAAACAA 59.932 47.619 0.00 0.00 0.00 2.83
4991 9648 1.482593 ACCCATTTGCACCGAAACAAA 59.517 42.857 0.00 0.00 39.87 2.83
4992 9649 2.134346 CCCATTTGCACCGAAACAAAG 58.866 47.619 0.00 0.00 39.01 2.77
4993 9650 2.134346 CCATTTGCACCGAAACAAAGG 58.866 47.619 0.00 0.00 39.01 3.11
4994 9651 2.134346 CATTTGCACCGAAACAAAGGG 58.866 47.619 0.00 0.00 39.01 3.95
4995 9652 1.475403 TTTGCACCGAAACAAAGGGA 58.525 45.000 0.00 0.00 32.28 4.20
4996 9653 0.741915 TTGCACCGAAACAAAGGGAC 59.258 50.000 0.00 0.00 0.00 4.46
4997 9654 1.104577 TGCACCGAAACAAAGGGACC 61.105 55.000 0.00 0.00 0.00 4.46
4998 9655 0.822121 GCACCGAAACAAAGGGACCT 60.822 55.000 0.00 0.00 0.00 3.85
4999 9656 1.687563 CACCGAAACAAAGGGACCTT 58.312 50.000 0.00 0.00 37.98 3.50
5000 9657 1.607148 CACCGAAACAAAGGGACCTTC 59.393 52.381 3.71 0.00 34.84 3.46
5001 9658 1.213430 ACCGAAACAAAGGGACCTTCA 59.787 47.619 3.71 0.00 34.84 3.02
5002 9659 2.303175 CCGAAACAAAGGGACCTTCAA 58.697 47.619 3.71 0.00 34.84 2.69
5003 9660 2.691011 CCGAAACAAAGGGACCTTCAAA 59.309 45.455 3.71 0.00 34.84 2.69
5004 9661 3.490249 CCGAAACAAAGGGACCTTCAAAC 60.490 47.826 3.71 0.00 34.84 2.93
5005 9662 3.490249 CGAAACAAAGGGACCTTCAAACC 60.490 47.826 3.71 0.00 34.84 3.27
5006 9663 2.838637 ACAAAGGGACCTTCAAACCA 57.161 45.000 3.71 0.00 34.84 3.67
5007 9664 2.384828 ACAAAGGGACCTTCAAACCAC 58.615 47.619 3.71 0.00 34.84 4.16
5008 9665 1.686587 CAAAGGGACCTTCAAACCACC 59.313 52.381 3.71 0.00 34.84 4.61
5009 9666 1.231963 AAGGGACCTTCAAACCACCT 58.768 50.000 0.00 0.00 0.00 4.00
5010 9667 0.771755 AGGGACCTTCAAACCACCTC 59.228 55.000 0.00 0.00 0.00 3.85
5011 9668 0.251209 GGGACCTTCAAACCACCTCC 60.251 60.000 0.00 0.00 0.00 4.30
5012 9669 0.476771 GGACCTTCAAACCACCTCCA 59.523 55.000 0.00 0.00 0.00 3.86
5013 9670 1.075536 GGACCTTCAAACCACCTCCAT 59.924 52.381 0.00 0.00 0.00 3.41
5014 9671 2.307686 GGACCTTCAAACCACCTCCATA 59.692 50.000 0.00 0.00 0.00 2.74
5015 9672 3.610911 GACCTTCAAACCACCTCCATAG 58.389 50.000 0.00 0.00 0.00 2.23
5016 9673 2.986728 ACCTTCAAACCACCTCCATAGT 59.013 45.455 0.00 0.00 0.00 2.12
5017 9674 3.397955 ACCTTCAAACCACCTCCATAGTT 59.602 43.478 0.00 0.00 0.00 2.24
5018 9675 4.600111 ACCTTCAAACCACCTCCATAGTTA 59.400 41.667 0.00 0.00 0.00 2.24
5019 9676 5.073965 ACCTTCAAACCACCTCCATAGTTAA 59.926 40.000 0.00 0.00 0.00 2.01
5020 9677 5.648092 CCTTCAAACCACCTCCATAGTTAAG 59.352 44.000 0.00 0.00 0.00 1.85
5021 9678 5.836024 TCAAACCACCTCCATAGTTAAGT 57.164 39.130 0.00 0.00 0.00 2.24
5022 9679 6.195600 TCAAACCACCTCCATAGTTAAGTT 57.804 37.500 0.00 0.00 0.00 2.66
5023 9680 6.235664 TCAAACCACCTCCATAGTTAAGTTC 58.764 40.000 0.00 0.00 0.00 3.01
5024 9681 4.838904 ACCACCTCCATAGTTAAGTTCC 57.161 45.455 0.00 0.00 0.00 3.62
5025 9682 3.522343 ACCACCTCCATAGTTAAGTTCCC 59.478 47.826 0.00 0.00 0.00 3.97
5026 9683 3.521937 CCACCTCCATAGTTAAGTTCCCA 59.478 47.826 0.00 0.00 0.00 4.37
5027 9684 4.166144 CCACCTCCATAGTTAAGTTCCCAT 59.834 45.833 0.00 0.00 0.00 4.00
5028 9685 5.368523 CCACCTCCATAGTTAAGTTCCCATA 59.631 44.000 0.00 0.00 0.00 2.74
5029 9686 6.044404 CCACCTCCATAGTTAAGTTCCCATAT 59.956 42.308 0.00 0.00 0.00 1.78
5030 9687 6.936900 CACCTCCATAGTTAAGTTCCCATATG 59.063 42.308 0.00 0.00 0.00 1.78
5031 9688 6.619852 ACCTCCATAGTTAAGTTCCCATATGT 59.380 38.462 1.24 0.00 0.00 2.29
5032 9689 7.162082 CCTCCATAGTTAAGTTCCCATATGTC 58.838 42.308 1.24 0.00 0.00 3.06
5033 9690 7.074653 TCCATAGTTAAGTTCCCATATGTCC 57.925 40.000 1.24 0.00 0.00 4.02
5034 9691 6.849697 TCCATAGTTAAGTTCCCATATGTCCT 59.150 38.462 1.24 0.00 0.00 3.85
5035 9692 7.016268 TCCATAGTTAAGTTCCCATATGTCCTC 59.984 40.741 1.24 0.00 0.00 3.71
5036 9693 7.016661 CCATAGTTAAGTTCCCATATGTCCTCT 59.983 40.741 1.24 0.00 0.00 3.69
5037 9694 9.090103 CATAGTTAAGTTCCCATATGTCCTCTA 57.910 37.037 1.24 0.00 0.00 2.43
5038 9695 9.845214 ATAGTTAAGTTCCCATATGTCCTCTAT 57.155 33.333 1.24 0.00 0.00 1.98
5039 9696 7.967908 AGTTAAGTTCCCATATGTCCTCTATG 58.032 38.462 1.24 0.00 0.00 2.23
5040 9697 7.569111 AGTTAAGTTCCCATATGTCCTCTATGT 59.431 37.037 1.24 0.00 0.00 2.29
5041 9698 8.867097 GTTAAGTTCCCATATGTCCTCTATGTA 58.133 37.037 1.24 0.00 0.00 2.29
5042 9699 7.931015 AAGTTCCCATATGTCCTCTATGTAA 57.069 36.000 1.24 0.00 0.00 2.41
5043 9700 7.304497 AGTTCCCATATGTCCTCTATGTAAC 57.696 40.000 1.24 0.00 0.00 2.50
5044 9701 6.270231 AGTTCCCATATGTCCTCTATGTAACC 59.730 42.308 1.24 0.00 29.51 2.85
5045 9702 5.722290 TCCCATATGTCCTCTATGTAACCA 58.278 41.667 1.24 0.00 0.00 3.67
5046 9703 6.331032 TCCCATATGTCCTCTATGTAACCAT 58.669 40.000 1.24 0.00 34.97 3.55
5047 9704 7.483881 TCCCATATGTCCTCTATGTAACCATA 58.516 38.462 1.24 0.00 32.29 2.74
5048 9705 7.959152 TCCCATATGTCCTCTATGTAACCATAA 59.041 37.037 1.24 0.00 33.23 1.90
5049 9706 8.772250 CCCATATGTCCTCTATGTAACCATAAT 58.228 37.037 1.24 0.00 33.23 1.28
5063 9720 8.528044 TGTAACCATAATATGTTTCCTTTCCC 57.472 34.615 0.00 0.00 0.00 3.97
5064 9721 6.709018 AACCATAATATGTTTCCTTTCCCG 57.291 37.500 0.00 0.00 0.00 5.14
5065 9722 5.762279 ACCATAATATGTTTCCTTTCCCGT 58.238 37.500 0.00 0.00 0.00 5.28
5066 9723 5.592688 ACCATAATATGTTTCCTTTCCCGTG 59.407 40.000 0.00 0.00 0.00 4.94
5067 9724 5.592688 CCATAATATGTTTCCTTTCCCGTGT 59.407 40.000 0.00 0.00 0.00 4.49
5068 9725 6.096282 CCATAATATGTTTCCTTTCCCGTGTT 59.904 38.462 0.00 0.00 0.00 3.32
5069 9726 5.385509 AATATGTTTCCTTTCCCGTGTTG 57.614 39.130 0.00 0.00 0.00 3.33
5070 9727 1.394618 TGTTTCCTTTCCCGTGTTGG 58.605 50.000 0.00 0.00 37.55 3.77
5071 9728 1.341187 TGTTTCCTTTCCCGTGTTGGT 60.341 47.619 0.00 0.00 35.15 3.67
5072 9729 1.752498 GTTTCCTTTCCCGTGTTGGTT 59.248 47.619 0.00 0.00 35.15 3.67
5073 9730 1.394618 TTCCTTTCCCGTGTTGGTTG 58.605 50.000 0.00 0.00 35.15 3.77
5074 9731 0.256464 TCCTTTCCCGTGTTGGTTGT 59.744 50.000 0.00 0.00 35.15 3.32
5075 9732 1.107945 CCTTTCCCGTGTTGGTTGTT 58.892 50.000 0.00 0.00 35.15 2.83
5076 9733 1.202359 CCTTTCCCGTGTTGGTTGTTG 60.202 52.381 0.00 0.00 35.15 3.33
5077 9734 0.173708 TTTCCCGTGTTGGTTGTTGC 59.826 50.000 0.00 0.00 35.15 4.17
5078 9735 0.965866 TTCCCGTGTTGGTTGTTGCA 60.966 50.000 0.00 0.00 35.15 4.08
5079 9736 0.753479 TCCCGTGTTGGTTGTTGCAT 60.753 50.000 0.00 0.00 35.15 3.96
5080 9737 0.318614 CCCGTGTTGGTTGTTGCATC 60.319 55.000 0.00 0.00 35.15 3.91
5081 9738 0.383590 CCGTGTTGGTTGTTGCATCA 59.616 50.000 0.00 0.00 0.00 3.07
5082 9739 1.202348 CCGTGTTGGTTGTTGCATCAA 60.202 47.619 6.10 6.10 0.00 2.57
5083 9740 2.534298 CGTGTTGGTTGTTGCATCAAA 58.466 42.857 11.67 0.00 0.00 2.69
5084 9741 2.535166 CGTGTTGGTTGTTGCATCAAAG 59.465 45.455 11.67 0.00 0.00 2.77
5085 9742 2.284952 GTGTTGGTTGTTGCATCAAAGC 59.715 45.455 11.67 5.43 0.00 3.51
5086 9743 1.522258 GTTGGTTGTTGCATCAAAGCG 59.478 47.619 11.67 0.00 37.31 4.68
5087 9744 0.031857 TGGTTGTTGCATCAAAGCGG 59.968 50.000 11.67 0.00 37.31 5.52
5088 9745 0.313672 GGTTGTTGCATCAAAGCGGA 59.686 50.000 11.67 0.00 37.31 5.54
5089 9746 1.408422 GTTGTTGCATCAAAGCGGAC 58.592 50.000 11.67 0.00 37.31 4.79
5090 9747 1.028130 TTGTTGCATCAAAGCGGACA 58.972 45.000 7.74 0.00 37.31 4.02
5091 9748 0.310543 TGTTGCATCAAAGCGGACAC 59.689 50.000 0.00 0.00 37.31 3.67
5092 9749 0.387239 GTTGCATCAAAGCGGACACC 60.387 55.000 0.00 0.00 37.31 4.16
5093 9750 0.821301 TTGCATCAAAGCGGACACCA 60.821 50.000 0.00 0.00 37.31 4.17
5094 9751 1.210155 GCATCAAAGCGGACACCAC 59.790 57.895 0.00 0.00 0.00 4.16
5095 9752 1.875963 CATCAAAGCGGACACCACC 59.124 57.895 0.00 0.00 0.00 4.61
5102 9759 3.027292 CGGACACCACCGTTTTGG 58.973 61.111 0.00 0.00 46.70 3.28
5112 9769 2.414750 CCGTTTTGGTTGGTGCTCT 58.585 52.632 0.00 0.00 0.00 4.09
5113 9770 0.744281 CCGTTTTGGTTGGTGCTCTT 59.256 50.000 0.00 0.00 0.00 2.85
5114 9771 1.269051 CCGTTTTGGTTGGTGCTCTTC 60.269 52.381 0.00 0.00 0.00 2.87
5115 9772 1.676006 CGTTTTGGTTGGTGCTCTTCT 59.324 47.619 0.00 0.00 0.00 2.85
5116 9773 2.099098 CGTTTTGGTTGGTGCTCTTCTT 59.901 45.455 0.00 0.00 0.00 2.52
5117 9774 3.314080 CGTTTTGGTTGGTGCTCTTCTTA 59.686 43.478 0.00 0.00 0.00 2.10
5118 9775 4.023193 CGTTTTGGTTGGTGCTCTTCTTAT 60.023 41.667 0.00 0.00 0.00 1.73
5119 9776 5.461526 GTTTTGGTTGGTGCTCTTCTTATC 58.538 41.667 0.00 0.00 0.00 1.75
5120 9777 4.640771 TTGGTTGGTGCTCTTCTTATCT 57.359 40.909 0.00 0.00 0.00 1.98
5121 9778 4.640771 TGGTTGGTGCTCTTCTTATCTT 57.359 40.909 0.00 0.00 0.00 2.40
5122 9779 4.326826 TGGTTGGTGCTCTTCTTATCTTG 58.673 43.478 0.00 0.00 0.00 3.02
5123 9780 3.691609 GGTTGGTGCTCTTCTTATCTTGG 59.308 47.826 0.00 0.00 0.00 3.61
5124 9781 3.634397 TGGTGCTCTTCTTATCTTGGG 57.366 47.619 0.00 0.00 0.00 4.12
5125 9782 2.293170 GGTGCTCTTCTTATCTTGGGC 58.707 52.381 0.00 0.00 0.00 5.36
5126 9783 1.936547 GTGCTCTTCTTATCTTGGGCG 59.063 52.381 0.00 0.00 0.00 6.13
5127 9784 1.831106 TGCTCTTCTTATCTTGGGCGA 59.169 47.619 0.00 0.00 0.00 5.54
5128 9785 2.435805 TGCTCTTCTTATCTTGGGCGAT 59.564 45.455 0.00 0.00 0.00 4.58
5129 9786 3.063485 GCTCTTCTTATCTTGGGCGATC 58.937 50.000 0.00 0.00 0.00 3.69
5130 9787 3.312828 CTCTTCTTATCTTGGGCGATCG 58.687 50.000 11.69 11.69 0.00 3.69
5131 9788 2.693591 TCTTCTTATCTTGGGCGATCGT 59.306 45.455 17.81 0.00 0.00 3.73
5132 9789 2.509052 TCTTATCTTGGGCGATCGTG 57.491 50.000 17.81 2.72 0.00 4.35
5133 9790 1.754803 TCTTATCTTGGGCGATCGTGT 59.245 47.619 17.81 0.00 0.00 4.49
5134 9791 2.953648 TCTTATCTTGGGCGATCGTGTA 59.046 45.455 17.81 0.00 0.00 2.90
5135 9792 3.382227 TCTTATCTTGGGCGATCGTGTAA 59.618 43.478 17.81 8.25 0.00 2.41
5136 9793 2.684001 ATCTTGGGCGATCGTGTAAA 57.316 45.000 17.81 5.81 0.00 2.01
5137 9794 2.459060 TCTTGGGCGATCGTGTAAAA 57.541 45.000 17.81 4.09 0.00 1.52
5138 9795 2.980568 TCTTGGGCGATCGTGTAAAAT 58.019 42.857 17.81 0.00 0.00 1.82
5139 9796 2.675844 TCTTGGGCGATCGTGTAAAATG 59.324 45.455 17.81 0.56 0.00 2.32
5140 9797 2.102070 TGGGCGATCGTGTAAAATGT 57.898 45.000 17.81 0.00 0.00 2.71
5141 9798 3.248495 TGGGCGATCGTGTAAAATGTA 57.752 42.857 17.81 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.018490 ACTGATTAGCATGATGTTTGGCA 58.982 39.130 0.00 0.00 0.00 4.92
25 26 9.587772 GAGAACTTGATTAGTAACTGATTAGCA 57.412 33.333 0.00 0.00 35.54 3.49
85 86 2.028484 GACACCTCGTCCGTGCAA 59.972 61.111 0.00 0.00 38.85 4.08
97 98 0.605319 TTTGCATGAGTCGGGACACC 60.605 55.000 0.00 0.00 0.00 4.16
98 99 0.798776 CTTTGCATGAGTCGGGACAC 59.201 55.000 0.00 0.00 0.00 3.67
99 100 0.955428 GCTTTGCATGAGTCGGGACA 60.955 55.000 0.00 0.00 0.00 4.02
100 101 1.648467 GGCTTTGCATGAGTCGGGAC 61.648 60.000 0.00 0.00 0.00 4.46
101 102 1.377202 GGCTTTGCATGAGTCGGGA 60.377 57.895 0.00 0.00 0.00 5.14
102 103 2.409870 GGGCTTTGCATGAGTCGGG 61.410 63.158 0.00 0.00 0.00 5.14
103 104 2.409870 GGGGCTTTGCATGAGTCGG 61.410 63.158 0.00 0.00 0.00 4.79
104 105 1.377725 AGGGGCTTTGCATGAGTCG 60.378 57.895 0.00 0.00 0.00 4.18
105 106 0.322816 TCAGGGGCTTTGCATGAGTC 60.323 55.000 0.00 0.00 0.00 3.36
110 111 0.827507 AAACGTCAGGGGCTTTGCAT 60.828 50.000 0.00 0.00 0.00 3.96
117 118 0.951040 CAGAGACAAACGTCAGGGGC 60.951 60.000 0.00 0.00 35.75 5.80
155 158 0.175073 ATCGGCCGAGTGGTTTAGAC 59.825 55.000 33.87 0.00 37.67 2.59
159 162 0.035439 ATCAATCGGCCGAGTGGTTT 60.035 50.000 43.91 30.07 40.19 3.27
160 163 0.828022 TATCAATCGGCCGAGTGGTT 59.172 50.000 43.91 34.59 40.19 3.67
171 174 1.497991 ACGCGGGACAATATCAATCG 58.502 50.000 12.47 0.00 0.00 3.34
175 178 0.537653 TCCAACGCGGGACAATATCA 59.462 50.000 12.47 0.00 34.36 2.15
180 183 0.035036 TGTTATCCAACGCGGGACAA 59.965 50.000 12.47 0.00 40.44 3.18
181 184 0.671163 GTGTTATCCAACGCGGGACA 60.671 55.000 12.47 0.39 40.44 4.02
183 186 0.035036 TTGTGTTATCCAACGCGGGA 59.965 50.000 12.47 9.14 46.14 5.14
188 191 2.096614 GGACGTGTTGTGTTATCCAACG 60.097 50.000 0.00 0.00 44.00 4.10
193 196 3.972502 GCTTTTGGACGTGTTGTGTTATC 59.027 43.478 0.00 0.00 0.00 1.75
196 199 1.542030 TGCTTTTGGACGTGTTGTGTT 59.458 42.857 0.00 0.00 0.00 3.32
210 213 1.692519 ACACGTCTAGACCCTGCTTTT 59.307 47.619 17.23 0.00 0.00 2.27
222 225 2.074230 AAACCGTCCGCACACGTCTA 62.074 55.000 3.94 0.00 38.14 2.59
224 227 2.963320 AAACCGTCCGCACACGTC 60.963 61.111 3.94 0.00 38.14 4.34
243 246 1.076533 CCATCTTCAACGACGACCCG 61.077 60.000 0.00 0.00 0.00 5.28
245 248 1.359459 GGCCATCTTCAACGACGACC 61.359 60.000 0.00 0.00 0.00 4.79
249 252 1.696832 GCTCGGCCATCTTCAACGAC 61.697 60.000 2.24 0.00 0.00 4.34
250 253 1.447838 GCTCGGCCATCTTCAACGA 60.448 57.895 2.24 0.00 0.00 3.85
262 265 2.033424 GGATGAGTAAAATTGGCTCGGC 59.967 50.000 0.00 0.00 32.32 5.54
291 294 3.039202 GCTCGCATTCAACCCACGG 62.039 63.158 0.00 0.00 0.00 4.94
293 296 0.387239 GTTGCTCGCATTCAACCCAC 60.387 55.000 0.00 0.00 37.26 4.61
357 360 1.875813 GATCACTGACGCCGAGCAG 60.876 63.158 9.47 9.47 38.10 4.24
369 372 2.882777 CGCGCGCTCAAGATCACT 60.883 61.111 30.48 0.00 0.00 3.41
441 456 2.223900 CGCACCATCTCTCTCTATGCAA 60.224 50.000 0.00 0.00 0.00 4.08
442 457 1.339291 CGCACCATCTCTCTCTATGCA 59.661 52.381 0.00 0.00 0.00 3.96
452 471 3.869272 CCAAGCGCGCACCATCTC 61.869 66.667 35.10 0.00 0.00 2.75
453 472 4.704833 ACCAAGCGCGCACCATCT 62.705 61.111 35.10 8.46 0.00 2.90
463 482 4.717629 TCCAGCGTCGACCAAGCG 62.718 66.667 10.58 0.00 35.78 4.68
514 602 2.527100 GCGACGAAATGCAGTAGTAGT 58.473 47.619 0.00 0.00 0.00 2.73
639 740 6.205658 TCTCAATCGTAGGAGAGATGTGTATG 59.794 42.308 1.43 0.00 35.34 2.39
654 755 6.038271 TCGATCAAGACAAGATCTCAATCGTA 59.962 38.462 14.99 5.59 44.41 3.43
739 846 6.791371 AGGGATCAGGATAAGATCGTACTAA 58.209 40.000 0.00 0.00 42.16 2.24
741 848 5.263872 AGGGATCAGGATAAGATCGTACT 57.736 43.478 0.00 0.00 42.16 2.73
743 850 5.641155 TCAAGGGATCAGGATAAGATCGTA 58.359 41.667 0.00 0.00 42.16 3.43
744 851 4.483950 TCAAGGGATCAGGATAAGATCGT 58.516 43.478 0.00 0.00 42.16 3.73
788 896 7.581213 AGTGGTCTTGTGTTTGATTTGATAA 57.419 32.000 0.00 0.00 0.00 1.75
804 912 2.638363 GACTTTGGGTCCTAGTGGTCTT 59.362 50.000 0.00 0.00 38.93 3.01
904 3422 1.299562 GGTGTGAGAGCTCTCGACGA 61.300 60.000 32.86 16.98 45.72 4.20
925 3443 1.073025 TAGTGTGGCTTGCTGTGGG 59.927 57.895 0.00 0.00 0.00 4.61
983 3501 2.606961 ATCTTGGTGCGTGTGTGCG 61.607 57.895 0.00 0.00 37.81 5.34
984 3502 1.081906 CATCTTGGTGCGTGTGTGC 60.082 57.895 0.00 0.00 0.00 4.57
992 3518 2.480555 CGCCGAACATCTTGGTGC 59.519 61.111 0.00 0.00 0.00 5.01
1345 4121 3.181367 GTGATGAACGGCAGGCTG 58.819 61.111 10.94 10.94 0.00 4.85
1621 4931 2.724174 GTGGACAAGCAAAAACGTATGC 59.276 45.455 11.65 11.65 42.87 3.14
1657 5041 1.623809 CGCACGCACGTACATACAG 59.376 57.895 0.00 0.00 0.00 2.74
1914 5304 1.665679 GTGTGAGAGAGAGAGCGAGAG 59.334 57.143 0.00 0.00 0.00 3.20
1915 5305 1.277842 AGTGTGAGAGAGAGAGCGAGA 59.722 52.381 0.00 0.00 0.00 4.04
1916 5306 1.665679 GAGTGTGAGAGAGAGAGCGAG 59.334 57.143 0.00 0.00 0.00 5.03
1917 5307 1.002544 TGAGTGTGAGAGAGAGAGCGA 59.997 52.381 0.00 0.00 0.00 4.93
1918 5308 1.130373 GTGAGTGTGAGAGAGAGAGCG 59.870 57.143 0.00 0.00 0.00 5.03
1919 5309 2.436417 AGTGAGTGTGAGAGAGAGAGC 58.564 52.381 0.00 0.00 0.00 4.09
1920 5310 3.623060 GCTAGTGAGTGTGAGAGAGAGAG 59.377 52.174 0.00 0.00 0.00 3.20
1928 5323 2.163412 GGAGAGTGCTAGTGAGTGTGAG 59.837 54.545 0.00 0.00 0.00 3.51
1931 5326 2.560542 CAAGGAGAGTGCTAGTGAGTGT 59.439 50.000 0.00 0.00 0.00 3.55
2355 5787 5.946942 TCAGCTCTTATCCAGACAAGAAT 57.053 39.130 0.00 0.00 30.68 2.40
2357 5789 5.946942 AATCAGCTCTTATCCAGACAAGA 57.053 39.130 0.00 0.00 0.00 3.02
2359 5791 9.547753 GTAAATAATCAGCTCTTATCCAGACAA 57.452 33.333 0.00 0.00 0.00 3.18
2363 5795 8.768955 GTGTGTAAATAATCAGCTCTTATCCAG 58.231 37.037 0.00 0.00 0.00 3.86
2366 5798 8.269424 CACGTGTGTAAATAATCAGCTCTTATC 58.731 37.037 7.58 0.00 0.00 1.75
2372 5804 4.000325 TGCACGTGTGTAAATAATCAGCT 59.000 39.130 18.38 0.00 0.00 4.24
2373 5805 4.092821 TCTGCACGTGTGTAAATAATCAGC 59.907 41.667 18.38 0.00 0.00 4.26
2375 5807 4.629634 CCTCTGCACGTGTGTAAATAATCA 59.370 41.667 18.38 1.15 0.00 2.57
2386 5970 1.452953 TTCTCGTCCTCTGCACGTGT 61.453 55.000 18.38 0.00 38.45 4.49
2523 6188 2.620115 CCATGCTTAATCACCGATGCTT 59.380 45.455 0.00 0.00 0.00 3.91
2526 6191 3.470709 AGTCCATGCTTAATCACCGATG 58.529 45.455 0.00 0.00 0.00 3.84
2528 6193 4.746535 TTAGTCCATGCTTAATCACCGA 57.253 40.909 0.00 0.00 0.00 4.69
2529 6194 4.876107 AGTTTAGTCCATGCTTAATCACCG 59.124 41.667 0.00 0.00 0.00 4.94
2530 6195 7.859325 TTAGTTTAGTCCATGCTTAATCACC 57.141 36.000 0.00 0.00 0.00 4.02
2531 6196 8.345565 CCATTAGTTTAGTCCATGCTTAATCAC 58.654 37.037 0.00 0.00 0.00 3.06
2532 6197 8.052748 ACCATTAGTTTAGTCCATGCTTAATCA 58.947 33.333 0.00 0.00 0.00 2.57
2533 6198 8.451908 ACCATTAGTTTAGTCCATGCTTAATC 57.548 34.615 0.00 0.00 0.00 1.75
2563 6228 7.563020 TCCTGCAATGCAATGGATTAATTTTA 58.437 30.769 9.92 0.00 38.41 1.52
2946 6611 2.813908 CAGACGTACGCCTTGGCC 60.814 66.667 16.72 0.00 0.00 5.36
3296 6962 5.158141 TCTCATAATCAACCTGCTCCCTAT 58.842 41.667 0.00 0.00 0.00 2.57
3297 6963 4.556697 TCTCATAATCAACCTGCTCCCTA 58.443 43.478 0.00 0.00 0.00 3.53
3298 6964 3.387962 TCTCATAATCAACCTGCTCCCT 58.612 45.455 0.00 0.00 0.00 4.20
3300 6966 5.028549 TCTTCTCATAATCAACCTGCTCC 57.971 43.478 0.00 0.00 0.00 4.70
3301 6967 5.295540 GGTTCTTCTCATAATCAACCTGCTC 59.704 44.000 0.00 0.00 32.16 4.26
3310 6977 5.100259 TGACGAACGGTTCTTCTCATAATC 58.900 41.667 22.71 7.20 0.00 1.75
3382 7099 2.822399 GGGCTAGATGGGTCACGG 59.178 66.667 0.00 0.00 0.00 4.94
3406 7123 2.203195 TCAAGCAGCAACCGCACT 60.203 55.556 0.00 0.00 42.27 4.40
3413 7130 0.324943 GGGTAGTCCTCAAGCAGCAA 59.675 55.000 0.00 0.00 0.00 3.91
3493 7210 1.822371 TCGCTTGTGTAGTAGATGGCA 59.178 47.619 0.00 0.00 0.00 4.92
3532 7249 4.994471 CACGCCTGCAGCTCCACA 62.994 66.667 8.66 0.00 40.39 4.17
3607 7324 0.174845 CCGCCACCGTCTTCATCTTA 59.825 55.000 0.00 0.00 0.00 2.10
3676 7393 2.739287 CCGAAGTTTACGGCGGCA 60.739 61.111 13.24 0.00 43.74 5.69
3966 7683 3.473647 CGATGCCCTCCAGCCTCA 61.474 66.667 0.00 0.00 0.00 3.86
4048 7765 2.168496 GGGTAGAGCAGCATATACGGA 58.832 52.381 0.00 0.00 0.00 4.69
4054 7771 1.209504 GTGTTGGGGTAGAGCAGCATA 59.790 52.381 0.00 0.00 0.00 3.14
4140 7857 6.371278 ACAATGCTCCTCCAAATATCTCATT 58.629 36.000 0.00 0.00 0.00 2.57
4183 8489 2.200170 GAAGCACGCACCCCAACATC 62.200 60.000 0.00 0.00 0.00 3.06
4203 8509 8.845413 ACTAGATTATTGAAGCAATGATCCTC 57.155 34.615 16.47 0.70 43.36 3.71
4273 8580 4.632327 TGGAACATACATTGACCACTGA 57.368 40.909 0.00 0.00 33.22 3.41
4336 8654 8.523658 ACTCTTTCCATTAAAAGAAGCATAACC 58.476 33.333 1.26 0.00 42.93 2.85
4354 8672 5.416013 CAGTAGGAAATTTCCCACTCTTTCC 59.584 44.000 28.76 7.13 44.35 3.13
4475 8831 1.072331 CACAAGGGCTTATAGGCGGAT 59.928 52.381 0.18 0.00 42.43 4.18
4505 9158 6.264970 AGTTAGATACCGGTCTCCAATTCTAC 59.735 42.308 12.40 1.82 0.00 2.59
4519 9172 3.809279 TCATTGCATGCAGTTAGATACCG 59.191 43.478 21.50 3.55 0.00 4.02
4547 9200 7.232534 TGGCCTTTTTCTCAATGTAATGTTAGT 59.767 33.333 3.32 0.00 0.00 2.24
4548 9201 7.542130 GTGGCCTTTTTCTCAATGTAATGTTAG 59.458 37.037 3.32 0.00 0.00 2.34
4549 9202 7.014711 TGTGGCCTTTTTCTCAATGTAATGTTA 59.985 33.333 3.32 0.00 0.00 2.41
4551 9204 5.304101 TGTGGCCTTTTTCTCAATGTAATGT 59.696 36.000 3.32 0.00 0.00 2.71
4552 9205 5.634859 GTGTGGCCTTTTTCTCAATGTAATG 59.365 40.000 3.32 0.00 0.00 1.90
4555 9208 4.211125 TGTGTGGCCTTTTTCTCAATGTA 58.789 39.130 3.32 0.00 0.00 2.29
4556 9209 3.030291 TGTGTGGCCTTTTTCTCAATGT 58.970 40.909 3.32 0.00 0.00 2.71
4565 9222 0.393820 CCAAGCATGTGTGGCCTTTT 59.606 50.000 3.32 0.00 0.00 2.27
4569 9226 1.290009 GTTCCAAGCATGTGTGGCC 59.710 57.895 10.94 0.00 34.68 5.36
4573 9230 3.144657 TCTCATGTTCCAAGCATGTGT 57.855 42.857 0.00 0.00 42.94 3.72
4697 9354 4.634004 TGTGTATTTTGAATACCGCTGGAG 59.366 41.667 8.01 0.00 0.00 3.86
4699 9356 4.955925 TGTGTATTTTGAATACCGCTGG 57.044 40.909 8.01 0.00 0.00 4.85
4804 9461 6.812879 CATATGTTGCTCACACATATGGAT 57.187 37.500 19.03 0.00 44.62 3.41
4848 9505 2.592623 GATGTGGCGCGGGTTTTAGC 62.593 60.000 8.83 0.00 0.00 3.09
4854 9511 3.133464 CAATGATGTGGCGCGGGT 61.133 61.111 8.83 0.00 0.00 5.28
4855 9512 3.891400 CCAATGATGTGGCGCGGG 61.891 66.667 8.83 0.00 0.00 6.13
4861 9518 1.138859 TCGTCCTAGCCAATGATGTGG 59.861 52.381 0.00 0.00 42.05 4.17
4862 9519 2.602257 TCGTCCTAGCCAATGATGTG 57.398 50.000 0.00 0.00 0.00 3.21
4863 9520 3.470709 CATTCGTCCTAGCCAATGATGT 58.529 45.455 0.00 0.00 0.00 3.06
4864 9521 2.810274 CCATTCGTCCTAGCCAATGATG 59.190 50.000 0.00 0.00 0.00 3.07
4865 9522 2.439507 ACCATTCGTCCTAGCCAATGAT 59.560 45.455 0.00 0.00 0.00 2.45
4866 9523 1.837439 ACCATTCGTCCTAGCCAATGA 59.163 47.619 0.00 0.00 0.00 2.57
4867 9524 2.332063 ACCATTCGTCCTAGCCAATG 57.668 50.000 0.00 0.00 0.00 2.82
4868 9525 2.919228 GAACCATTCGTCCTAGCCAAT 58.081 47.619 0.00 0.00 0.00 3.16
4869 9526 2.396590 GAACCATTCGTCCTAGCCAA 57.603 50.000 0.00 0.00 0.00 4.52
4880 9537 1.004927 GCGTATGCAGACGAACCATTC 60.005 52.381 35.62 13.43 45.82 2.67
4881 9538 1.006832 GCGTATGCAGACGAACCATT 58.993 50.000 35.62 0.00 45.82 3.16
4882 9539 2.677971 GCGTATGCAGACGAACCAT 58.322 52.632 35.62 0.00 45.82 3.55
4883 9540 4.178861 GCGTATGCAGACGAACCA 57.821 55.556 35.62 0.00 45.82 3.67
4893 9550 4.521943 GATCTCAACAATCTTGCGTATGC 58.478 43.478 0.00 0.00 43.20 3.14
4894 9551 4.571984 TGGATCTCAACAATCTTGCGTATG 59.428 41.667 0.00 0.00 0.00 2.39
4895 9552 4.572389 GTGGATCTCAACAATCTTGCGTAT 59.428 41.667 0.00 0.00 0.00 3.06
4896 9553 3.932710 GTGGATCTCAACAATCTTGCGTA 59.067 43.478 0.00 0.00 0.00 4.42
4897 9554 2.744202 GTGGATCTCAACAATCTTGCGT 59.256 45.455 0.00 0.00 0.00 5.24
4898 9555 3.005554 AGTGGATCTCAACAATCTTGCG 58.994 45.455 0.00 0.00 0.00 4.85
4899 9556 3.755378 ACAGTGGATCTCAACAATCTTGC 59.245 43.478 0.00 0.00 0.00 4.01
4900 9557 5.240183 ACAACAGTGGATCTCAACAATCTTG 59.760 40.000 0.00 0.00 0.00 3.02
4901 9558 5.380043 ACAACAGTGGATCTCAACAATCTT 58.620 37.500 0.00 0.00 0.00 2.40
4902 9559 4.978099 ACAACAGTGGATCTCAACAATCT 58.022 39.130 0.00 0.00 0.00 2.40
4903 9560 4.756642 TGACAACAGTGGATCTCAACAATC 59.243 41.667 0.00 0.00 0.00 2.67
4904 9561 4.717877 TGACAACAGTGGATCTCAACAAT 58.282 39.130 0.00 0.00 0.00 2.71
4905 9562 4.149511 TGACAACAGTGGATCTCAACAA 57.850 40.909 0.00 0.00 0.00 2.83
4906 9563 3.836365 TGACAACAGTGGATCTCAACA 57.164 42.857 0.00 0.00 0.00 3.33
4907 9564 4.154918 GGAATGACAACAGTGGATCTCAAC 59.845 45.833 0.00 0.00 0.00 3.18
4908 9565 4.326826 GGAATGACAACAGTGGATCTCAA 58.673 43.478 0.00 0.00 0.00 3.02
4909 9566 3.617288 CGGAATGACAACAGTGGATCTCA 60.617 47.826 0.00 0.00 0.00 3.27
4910 9567 2.932614 CGGAATGACAACAGTGGATCTC 59.067 50.000 0.00 0.00 0.00 2.75
4911 9568 2.303022 ACGGAATGACAACAGTGGATCT 59.697 45.455 0.00 0.00 0.00 2.75
4912 9569 2.699954 ACGGAATGACAACAGTGGATC 58.300 47.619 0.00 0.00 0.00 3.36
4913 9570 2.859165 ACGGAATGACAACAGTGGAT 57.141 45.000 0.00 0.00 0.00 3.41
4914 9571 2.631062 AGTACGGAATGACAACAGTGGA 59.369 45.455 0.00 0.00 0.00 4.02
4915 9572 2.736721 CAGTACGGAATGACAACAGTGG 59.263 50.000 0.00 0.00 0.00 4.00
4916 9573 2.157668 GCAGTACGGAATGACAACAGTG 59.842 50.000 0.00 0.00 0.00 3.66
4917 9574 2.413837 GCAGTACGGAATGACAACAGT 58.586 47.619 0.00 0.00 0.00 3.55
4918 9575 1.390123 CGCAGTACGGAATGACAACAG 59.610 52.381 0.00 0.00 38.44 3.16
4919 9576 1.424403 CGCAGTACGGAATGACAACA 58.576 50.000 0.00 0.00 38.44 3.33
4939 9596 2.125391 GCGGGGTAACGGAAGACC 60.125 66.667 0.00 0.00 34.75 3.85
4940 9597 2.125391 GGCGGGGTAACGGAAGAC 60.125 66.667 0.00 0.00 37.60 3.01
4941 9598 2.284112 AGGCGGGGTAACGGAAGA 60.284 61.111 0.00 0.00 37.60 2.87
4942 9599 2.186125 GAGGCGGGGTAACGGAAG 59.814 66.667 0.00 0.00 37.60 3.46
4943 9600 3.762247 CGAGGCGGGGTAACGGAA 61.762 66.667 0.00 0.00 37.60 4.30
4945 9602 4.807039 CACGAGGCGGGGTAACGG 62.807 72.222 0.00 0.00 37.60 4.44
4946 9603 3.976902 GACACGAGGCGGGGTAACG 62.977 68.421 0.00 0.00 32.94 3.18
4947 9604 2.125793 GACACGAGGCGGGGTAAC 60.126 66.667 0.00 0.00 32.94 2.50
4948 9605 0.683828 TATGACACGAGGCGGGGTAA 60.684 55.000 0.00 0.00 32.94 2.85
4949 9606 0.468585 ATATGACACGAGGCGGGGTA 60.469 55.000 0.00 0.00 32.94 3.69
4950 9607 1.335132 AATATGACACGAGGCGGGGT 61.335 55.000 0.00 0.00 32.94 4.95
4951 9608 0.880278 CAATATGACACGAGGCGGGG 60.880 60.000 0.00 0.00 32.94 5.73
4952 9609 0.104120 TCAATATGACACGAGGCGGG 59.896 55.000 0.00 0.00 35.82 6.13
4953 9610 1.209128 GTCAATATGACACGAGGCGG 58.791 55.000 5.65 0.00 46.22 6.13
4962 9619 3.489059 CGGTGCAAATGGGTCAATATGAC 60.489 47.826 1.88 1.88 46.23 3.06
4963 9620 2.687425 CGGTGCAAATGGGTCAATATGA 59.313 45.455 0.00 0.00 0.00 2.15
4964 9621 2.687425 TCGGTGCAAATGGGTCAATATG 59.313 45.455 0.00 0.00 0.00 1.78
4965 9622 3.011566 TCGGTGCAAATGGGTCAATAT 57.988 42.857 0.00 0.00 0.00 1.28
4966 9623 2.498644 TCGGTGCAAATGGGTCAATA 57.501 45.000 0.00 0.00 0.00 1.90
4967 9624 1.626686 TTCGGTGCAAATGGGTCAAT 58.373 45.000 0.00 0.00 0.00 2.57
4968 9625 1.067821 GTTTCGGTGCAAATGGGTCAA 59.932 47.619 0.00 0.00 0.00 3.18
4969 9626 0.671251 GTTTCGGTGCAAATGGGTCA 59.329 50.000 0.00 0.00 0.00 4.02
4970 9627 0.671251 TGTTTCGGTGCAAATGGGTC 59.329 50.000 0.00 0.00 0.00 4.46
4971 9628 1.115467 TTGTTTCGGTGCAAATGGGT 58.885 45.000 0.00 0.00 0.00 4.51
4972 9629 2.134346 CTTTGTTTCGGTGCAAATGGG 58.866 47.619 0.00 0.00 34.60 4.00
4973 9630 2.134346 CCTTTGTTTCGGTGCAAATGG 58.866 47.619 0.00 0.00 34.60 3.16
4974 9631 2.134346 CCCTTTGTTTCGGTGCAAATG 58.866 47.619 0.00 0.00 34.60 2.32
4975 9632 2.035632 TCCCTTTGTTTCGGTGCAAAT 58.964 42.857 0.00 0.00 34.60 2.32
4976 9633 1.135333 GTCCCTTTGTTTCGGTGCAAA 59.865 47.619 0.00 0.00 34.05 3.68
4977 9634 0.741915 GTCCCTTTGTTTCGGTGCAA 59.258 50.000 0.00 0.00 0.00 4.08
4978 9635 1.104577 GGTCCCTTTGTTTCGGTGCA 61.105 55.000 0.00 0.00 0.00 4.57
4979 9636 0.822121 AGGTCCCTTTGTTTCGGTGC 60.822 55.000 0.00 0.00 0.00 5.01
4980 9637 1.607148 GAAGGTCCCTTTGTTTCGGTG 59.393 52.381 0.00 0.00 36.26 4.94
4981 9638 1.213430 TGAAGGTCCCTTTGTTTCGGT 59.787 47.619 0.00 0.00 36.26 4.69
4982 9639 1.975660 TGAAGGTCCCTTTGTTTCGG 58.024 50.000 0.00 0.00 36.26 4.30
4983 9640 3.490249 GGTTTGAAGGTCCCTTTGTTTCG 60.490 47.826 0.00 0.00 36.26 3.46
4984 9641 3.449377 TGGTTTGAAGGTCCCTTTGTTTC 59.551 43.478 0.00 0.00 36.26 2.78
4985 9642 3.196901 GTGGTTTGAAGGTCCCTTTGTTT 59.803 43.478 0.00 0.00 36.26 2.83
4986 9643 2.764010 GTGGTTTGAAGGTCCCTTTGTT 59.236 45.455 0.00 0.00 36.26 2.83
4987 9644 2.384828 GTGGTTTGAAGGTCCCTTTGT 58.615 47.619 0.00 0.00 36.26 2.83
4988 9645 1.686587 GGTGGTTTGAAGGTCCCTTTG 59.313 52.381 0.00 0.00 36.26 2.77
4989 9646 1.573857 AGGTGGTTTGAAGGTCCCTTT 59.426 47.619 0.00 0.00 36.26 3.11
4990 9647 1.145119 GAGGTGGTTTGAAGGTCCCTT 59.855 52.381 0.00 0.00 39.23 3.95
4991 9648 0.771755 GAGGTGGTTTGAAGGTCCCT 59.228 55.000 0.00 0.00 0.00 4.20
4992 9649 0.251209 GGAGGTGGTTTGAAGGTCCC 60.251 60.000 0.00 0.00 0.00 4.46
4993 9650 0.476771 TGGAGGTGGTTTGAAGGTCC 59.523 55.000 0.00 0.00 0.00 4.46
4994 9651 2.586648 ATGGAGGTGGTTTGAAGGTC 57.413 50.000 0.00 0.00 0.00 3.85
4995 9652 2.986728 ACTATGGAGGTGGTTTGAAGGT 59.013 45.455 0.00 0.00 0.00 3.50
4996 9653 3.721087 ACTATGGAGGTGGTTTGAAGG 57.279 47.619 0.00 0.00 0.00 3.46
4997 9654 6.238648 ACTTAACTATGGAGGTGGTTTGAAG 58.761 40.000 0.00 0.00 0.00 3.02
4998 9655 6.195600 ACTTAACTATGGAGGTGGTTTGAA 57.804 37.500 0.00 0.00 0.00 2.69
4999 9656 5.836024 ACTTAACTATGGAGGTGGTTTGA 57.164 39.130 0.00 0.00 0.00 2.69
5000 9657 5.414765 GGAACTTAACTATGGAGGTGGTTTG 59.585 44.000 0.00 0.00 0.00 2.93
5001 9658 5.516062 GGGAACTTAACTATGGAGGTGGTTT 60.516 44.000 0.00 0.00 0.00 3.27
5002 9659 4.018688 GGGAACTTAACTATGGAGGTGGTT 60.019 45.833 0.00 0.00 0.00 3.67
5003 9660 3.522343 GGGAACTTAACTATGGAGGTGGT 59.478 47.826 0.00 0.00 0.00 4.16
5004 9661 3.521937 TGGGAACTTAACTATGGAGGTGG 59.478 47.826 0.00 0.00 0.00 4.61
5005 9662 4.837093 TGGGAACTTAACTATGGAGGTG 57.163 45.455 0.00 0.00 0.00 4.00
5006 9663 6.619852 ACATATGGGAACTTAACTATGGAGGT 59.380 38.462 7.80 0.00 0.00 3.85
5007 9664 7.079451 ACATATGGGAACTTAACTATGGAGG 57.921 40.000 7.80 0.00 0.00 4.30
5008 9665 7.016661 AGGACATATGGGAACTTAACTATGGAG 59.983 40.741 7.80 0.00 0.00 3.86
5009 9666 6.849697 AGGACATATGGGAACTTAACTATGGA 59.150 38.462 7.80 0.00 0.00 3.41
5010 9667 7.016661 AGAGGACATATGGGAACTTAACTATGG 59.983 40.741 7.80 0.00 0.00 2.74
5011 9668 7.967908 AGAGGACATATGGGAACTTAACTATG 58.032 38.462 7.80 0.00 0.00 2.23
5012 9669 9.845214 ATAGAGGACATATGGGAACTTAACTAT 57.155 33.333 7.80 1.79 0.00 2.12
5013 9670 9.090103 CATAGAGGACATATGGGAACTTAACTA 57.910 37.037 7.80 0.00 0.00 2.24
5014 9671 7.569111 ACATAGAGGACATATGGGAACTTAACT 59.431 37.037 7.80 0.00 35.37 2.24
5015 9672 7.736893 ACATAGAGGACATATGGGAACTTAAC 58.263 38.462 7.80 0.00 35.37 2.01
5016 9673 7.931015 ACATAGAGGACATATGGGAACTTAA 57.069 36.000 7.80 0.00 35.37 1.85
5017 9674 8.867097 GTTACATAGAGGACATATGGGAACTTA 58.133 37.037 7.80 0.00 35.37 2.24
5018 9675 7.202102 GGTTACATAGAGGACATATGGGAACTT 60.202 40.741 7.80 0.00 35.37 2.66
5019 9676 6.270231 GGTTACATAGAGGACATATGGGAACT 59.730 42.308 7.80 4.13 35.37 3.01
5020 9677 6.042781 TGGTTACATAGAGGACATATGGGAAC 59.957 42.308 7.80 0.00 35.37 3.62
5021 9678 6.147473 TGGTTACATAGAGGACATATGGGAA 58.853 40.000 7.80 0.00 35.37 3.97
5022 9679 5.722290 TGGTTACATAGAGGACATATGGGA 58.278 41.667 7.80 0.00 35.37 4.37
5023 9680 6.627087 ATGGTTACATAGAGGACATATGGG 57.373 41.667 7.80 0.00 34.99 4.00
5037 9694 9.143155 GGGAAAGGAAACATATTATGGTTACAT 57.857 33.333 17.10 4.24 43.44 2.29
5038 9695 7.283580 CGGGAAAGGAAACATATTATGGTTACA 59.716 37.037 17.10 0.00 43.44 2.41
5039 9696 7.283807 ACGGGAAAGGAAACATATTATGGTTAC 59.716 37.037 8.41 8.41 41.00 2.50
5040 9697 7.283580 CACGGGAAAGGAAACATATTATGGTTA 59.716 37.037 6.94 0.00 41.00 2.85
5041 9698 6.096282 CACGGGAAAGGAAACATATTATGGTT 59.904 38.462 6.66 6.66 44.25 3.67
5042 9699 5.592688 CACGGGAAAGGAAACATATTATGGT 59.407 40.000 8.48 0.00 33.60 3.55
5043 9700 5.592688 ACACGGGAAAGGAAACATATTATGG 59.407 40.000 8.48 0.00 33.60 2.74
5044 9701 6.693315 ACACGGGAAAGGAAACATATTATG 57.307 37.500 0.00 2.03 0.00 1.90
5045 9702 6.096282 CCAACACGGGAAAGGAAACATATTAT 59.904 38.462 0.00 0.00 0.00 1.28
5046 9703 5.416326 CCAACACGGGAAAGGAAACATATTA 59.584 40.000 0.00 0.00 0.00 0.98
5047 9704 4.219725 CCAACACGGGAAAGGAAACATATT 59.780 41.667 0.00 0.00 0.00 1.28
5048 9705 3.761752 CCAACACGGGAAAGGAAACATAT 59.238 43.478 0.00 0.00 0.00 1.78
5049 9706 3.150767 CCAACACGGGAAAGGAAACATA 58.849 45.455 0.00 0.00 0.00 2.29
5050 9707 1.960689 CCAACACGGGAAAGGAAACAT 59.039 47.619 0.00 0.00 0.00 2.71
5051 9708 1.341187 ACCAACACGGGAAAGGAAACA 60.341 47.619 0.00 0.00 40.22 2.83
5052 9709 1.395635 ACCAACACGGGAAAGGAAAC 58.604 50.000 0.00 0.00 40.22 2.78
5053 9710 1.751924 CAACCAACACGGGAAAGGAAA 59.248 47.619 0.00 0.00 40.22 3.13
5054 9711 1.341187 ACAACCAACACGGGAAAGGAA 60.341 47.619 0.00 0.00 40.22 3.36
5055 9712 0.256464 ACAACCAACACGGGAAAGGA 59.744 50.000 0.00 0.00 40.22 3.36
5056 9713 1.107945 AACAACCAACACGGGAAAGG 58.892 50.000 0.00 0.00 40.22 3.11
5057 9714 1.801025 GCAACAACCAACACGGGAAAG 60.801 52.381 0.00 0.00 40.22 2.62
5058 9715 0.173708 GCAACAACCAACACGGGAAA 59.826 50.000 0.00 0.00 40.22 3.13
5059 9716 0.965866 TGCAACAACCAACACGGGAA 60.966 50.000 0.00 0.00 40.22 3.97
5060 9717 0.753479 ATGCAACAACCAACACGGGA 60.753 50.000 0.00 0.00 40.22 5.14
5061 9718 0.318614 GATGCAACAACCAACACGGG 60.319 55.000 0.00 0.00 40.22 5.28
5062 9719 0.383590 TGATGCAACAACCAACACGG 59.616 50.000 0.00 0.00 42.50 4.94
5063 9720 2.200792 TTGATGCAACAACCAACACG 57.799 45.000 5.14 0.00 0.00 4.49
5064 9721 2.284952 GCTTTGATGCAACAACCAACAC 59.715 45.455 9.14 0.00 0.00 3.32
5065 9722 2.548875 GCTTTGATGCAACAACCAACA 58.451 42.857 9.14 0.00 0.00 3.33
5066 9723 1.522258 CGCTTTGATGCAACAACCAAC 59.478 47.619 9.14 0.00 0.00 3.77
5067 9724 1.537776 CCGCTTTGATGCAACAACCAA 60.538 47.619 9.14 0.00 0.00 3.67
5068 9725 0.031857 CCGCTTTGATGCAACAACCA 59.968 50.000 9.14 0.00 0.00 3.67
5069 9726 0.313672 TCCGCTTTGATGCAACAACC 59.686 50.000 9.14 2.97 0.00 3.77
5070 9727 1.268999 TGTCCGCTTTGATGCAACAAC 60.269 47.619 9.14 0.00 0.00 3.32
5071 9728 1.028130 TGTCCGCTTTGATGCAACAA 58.972 45.000 5.14 5.14 0.00 2.83
5072 9729 0.310543 GTGTCCGCTTTGATGCAACA 59.689 50.000 0.00 0.00 0.00 3.33
5073 9730 0.387239 GGTGTCCGCTTTGATGCAAC 60.387 55.000 0.00 0.00 0.00 4.17
5074 9731 0.821301 TGGTGTCCGCTTTGATGCAA 60.821 50.000 0.00 0.00 0.00 4.08
5075 9732 1.228094 TGGTGTCCGCTTTGATGCA 60.228 52.632 0.00 0.00 0.00 3.96
5076 9733 1.210155 GTGGTGTCCGCTTTGATGC 59.790 57.895 0.00 0.00 0.00 3.91
5077 9734 1.875963 GGTGGTGTCCGCTTTGATG 59.124 57.895 0.00 0.00 33.98 3.07
5078 9735 1.671054 CGGTGGTGTCCGCTTTGAT 60.671 57.895 0.00 0.00 43.96 2.57
5079 9736 2.280524 CGGTGGTGTCCGCTTTGA 60.281 61.111 0.00 0.00 43.96 2.69
5094 9751 0.744281 AAGAGCACCAACCAAAACGG 59.256 50.000 0.00 0.00 42.50 4.44
5095 9752 1.676006 AGAAGAGCACCAACCAAAACG 59.324 47.619 0.00 0.00 0.00 3.60
5096 9753 3.801114 AAGAAGAGCACCAACCAAAAC 57.199 42.857 0.00 0.00 0.00 2.43
5097 9754 5.385198 AGATAAGAAGAGCACCAACCAAAA 58.615 37.500 0.00 0.00 0.00 2.44
5098 9755 4.985538 AGATAAGAAGAGCACCAACCAAA 58.014 39.130 0.00 0.00 0.00 3.28
5099 9756 4.640771 AGATAAGAAGAGCACCAACCAA 57.359 40.909 0.00 0.00 0.00 3.67
5100 9757 4.326826 CAAGATAAGAAGAGCACCAACCA 58.673 43.478 0.00 0.00 0.00 3.67
5101 9758 3.691609 CCAAGATAAGAAGAGCACCAACC 59.308 47.826 0.00 0.00 0.00 3.77
5102 9759 3.691609 CCCAAGATAAGAAGAGCACCAAC 59.308 47.826 0.00 0.00 0.00 3.77
5103 9760 3.873801 GCCCAAGATAAGAAGAGCACCAA 60.874 47.826 0.00 0.00 0.00 3.67
5104 9761 2.356125 GCCCAAGATAAGAAGAGCACCA 60.356 50.000 0.00 0.00 0.00 4.17
5105 9762 2.293170 GCCCAAGATAAGAAGAGCACC 58.707 52.381 0.00 0.00 0.00 5.01
5106 9763 1.936547 CGCCCAAGATAAGAAGAGCAC 59.063 52.381 0.00 0.00 0.00 4.40
5107 9764 1.831106 TCGCCCAAGATAAGAAGAGCA 59.169 47.619 0.00 0.00 0.00 4.26
5108 9765 2.604046 TCGCCCAAGATAAGAAGAGC 57.396 50.000 0.00 0.00 0.00 4.09
5109 9766 3.243569 ACGATCGCCCAAGATAAGAAGAG 60.244 47.826 16.60 0.00 0.00 2.85
5110 9767 2.693591 ACGATCGCCCAAGATAAGAAGA 59.306 45.455 16.60 0.00 0.00 2.87
5111 9768 2.797156 CACGATCGCCCAAGATAAGAAG 59.203 50.000 16.60 0.00 0.00 2.85
5112 9769 2.167693 ACACGATCGCCCAAGATAAGAA 59.832 45.455 16.60 0.00 0.00 2.52
5113 9770 1.754803 ACACGATCGCCCAAGATAAGA 59.245 47.619 16.60 0.00 0.00 2.10
5114 9771 2.225068 ACACGATCGCCCAAGATAAG 57.775 50.000 16.60 0.00 0.00 1.73
5115 9772 3.804786 TTACACGATCGCCCAAGATAA 57.195 42.857 16.60 0.97 0.00 1.75
5116 9773 3.804786 TTTACACGATCGCCCAAGATA 57.195 42.857 16.60 0.00 0.00 1.98
5117 9774 2.684001 TTTACACGATCGCCCAAGAT 57.316 45.000 16.60 0.00 0.00 2.40
5118 9775 2.459060 TTTTACACGATCGCCCAAGA 57.541 45.000 16.60 0.00 0.00 3.02
5119 9776 2.418628 ACATTTTACACGATCGCCCAAG 59.581 45.455 16.60 2.78 0.00 3.61
5120 9777 2.428491 ACATTTTACACGATCGCCCAA 58.572 42.857 16.60 3.25 0.00 4.12
5121 9778 2.102070 ACATTTTACACGATCGCCCA 57.898 45.000 16.60 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.