Multiple sequence alignment - TraesCS5B01G381000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G381000 chr5B 100.000 4265 0 0 1 4265 558711534 558715798 0.000000e+00 7877.0
1 TraesCS5B01G381000 chr5B 92.520 254 18 1 4013 4265 538301480 538301733 3.130000e-96 363.0
2 TraesCS5B01G381000 chr5A 93.510 3652 186 36 396 4010 574864863 574868500 0.000000e+00 5384.0
3 TraesCS5B01G381000 chr5D 94.401 3304 128 14 661 3947 456826777 456830040 0.000000e+00 5024.0
4 TraesCS5B01G381000 chr7D 93.359 256 16 1 4011 4265 546810605 546810350 1.120000e-100 377.0
5 TraesCS5B01G381000 chr3B 93.651 252 15 1 4014 4264 44581109 44580858 4.030000e-100 375.0
6 TraesCS5B01G381000 chr3B 91.803 122 8 2 2 122 720955385 720955265 7.330000e-38 169.0
7 TraesCS5B01G381000 chr2B 92.308 260 18 2 4007 4265 28600542 28600284 6.740000e-98 368.0
8 TraesCS5B01G381000 chr2B 92.278 259 19 1 4008 4265 119782446 119782704 2.420000e-97 366.0
9 TraesCS5B01G381000 chr2B 92.549 255 18 1 4011 4264 82080218 82079964 8.720000e-97 364.0
10 TraesCS5B01G381000 chr2B 93.443 61 4 0 15 75 213025876 213025816 1.630000e-14 91.6
11 TraesCS5B01G381000 chr7B 92.607 257 16 3 4011 4265 713921154 713921409 2.420000e-97 366.0
12 TraesCS5B01G381000 chr2D 92.578 256 18 1 4011 4265 565306740 565306485 2.420000e-97 366.0
13 TraesCS5B01G381000 chr2D 90.775 271 22 3 3996 4265 651005409 651005677 4.050000e-95 359.0
14 TraesCS5B01G381000 chr1A 89.474 285 30 0 114 398 132487620 132487904 1.130000e-95 361.0
15 TraesCS5B01G381000 chr6D 89.362 282 30 0 114 395 1589877 1590158 5.250000e-94 355.0
16 TraesCS5B01G381000 chr6A 88.889 279 31 0 114 392 1028995 1028717 1.140000e-90 344.0
17 TraesCS5B01G381000 chr3A 92.174 115 8 1 2 116 681457936 681457823 1.230000e-35 161.0
18 TraesCS5B01G381000 chr7A 90.164 122 9 3 2 122 116004587 116004468 5.710000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G381000 chr5B 558711534 558715798 4264 False 7877 7877 100.000 1 4265 1 chr5B.!!$F2 4264
1 TraesCS5B01G381000 chr5A 574864863 574868500 3637 False 5384 5384 93.510 396 4010 1 chr5A.!!$F1 3614
2 TraesCS5B01G381000 chr5D 456826777 456830040 3263 False 5024 5024 94.401 661 3947 1 chr5D.!!$F1 3286

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
385 386 0.098376 GCGTCGTCGAGTACTCCAAT 59.902 55.0 17.23 0.0 39.71 3.16 F
447 448 0.243636 ACGCAAAGCCTTATTGGTGC 59.756 50.0 0.00 0.0 38.35 5.01 F
1564 1629 0.533755 GGAGATGAGCAATCGGGGTG 60.534 60.0 0.00 0.0 40.54 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1440 1505 0.110238 CCTGAACGCCAAACATGTCG 60.110 55.000 0.00 0.11 0.0 4.35 R
1728 1793 0.975556 TCCTCAGTGCCGCCTCAATA 60.976 55.000 0.00 0.00 0.0 1.90 R
3491 3561 3.996150 AGGCGGCAAAATAATCTGATG 57.004 42.857 13.08 0.00 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.803201 TTTCATTGTTTACGCAATTGAATACA 57.197 26.923 10.34 2.67 37.00 2.29
26 27 8.446489 TTCATTGTTTACGCAATTGAATACAG 57.554 30.769 10.34 0.00 37.00 2.74
27 28 7.811653 TCATTGTTTACGCAATTGAATACAGA 58.188 30.769 10.34 0.00 37.00 3.41
28 29 7.962373 TCATTGTTTACGCAATTGAATACAGAG 59.038 33.333 10.34 2.85 37.00 3.35
29 30 6.176975 TGTTTACGCAATTGAATACAGAGG 57.823 37.500 10.34 0.00 0.00 3.69
30 31 5.703592 TGTTTACGCAATTGAATACAGAGGT 59.296 36.000 10.34 0.00 0.00 3.85
31 32 6.205853 TGTTTACGCAATTGAATACAGAGGTT 59.794 34.615 10.34 0.00 0.00 3.50
32 33 6.811253 TTACGCAATTGAATACAGAGGTTT 57.189 33.333 10.34 0.00 0.00 3.27
33 34 5.705609 ACGCAATTGAATACAGAGGTTTT 57.294 34.783 10.34 0.00 0.00 2.43
34 35 6.811253 ACGCAATTGAATACAGAGGTTTTA 57.189 33.333 10.34 0.00 0.00 1.52
35 36 6.842163 ACGCAATTGAATACAGAGGTTTTAG 58.158 36.000 10.34 0.00 0.00 1.85
36 37 6.653320 ACGCAATTGAATACAGAGGTTTTAGA 59.347 34.615 10.34 0.00 0.00 2.10
37 38 7.336931 ACGCAATTGAATACAGAGGTTTTAGAT 59.663 33.333 10.34 0.00 0.00 1.98
38 39 8.184192 CGCAATTGAATACAGAGGTTTTAGATT 58.816 33.333 10.34 0.00 0.00 2.40
45 46 9.460906 GAATACAGAGGTTTTAGATTACTACGG 57.539 37.037 0.00 0.00 0.00 4.02
46 47 6.847421 ACAGAGGTTTTAGATTACTACGGT 57.153 37.500 0.00 0.00 0.00 4.83
47 48 7.237209 ACAGAGGTTTTAGATTACTACGGTT 57.763 36.000 0.00 0.00 0.00 4.44
48 49 7.674120 ACAGAGGTTTTAGATTACTACGGTTT 58.326 34.615 0.00 0.00 0.00 3.27
49 50 8.152898 ACAGAGGTTTTAGATTACTACGGTTTT 58.847 33.333 0.00 0.00 0.00 2.43
50 51 8.440833 CAGAGGTTTTAGATTACTACGGTTTTG 58.559 37.037 0.00 0.00 0.00 2.44
51 52 8.370182 AGAGGTTTTAGATTACTACGGTTTTGA 58.630 33.333 0.00 0.00 0.00 2.69
52 53 8.543862 AGGTTTTAGATTACTACGGTTTTGAG 57.456 34.615 0.00 0.00 0.00 3.02
53 54 8.370182 AGGTTTTAGATTACTACGGTTTTGAGA 58.630 33.333 0.00 0.00 0.00 3.27
54 55 8.992073 GGTTTTAGATTACTACGGTTTTGAGAA 58.008 33.333 0.00 0.00 0.00 2.87
69 70 7.532682 GTTTTGAGAAAACTATGTTGCCAAA 57.467 32.000 4.96 0.00 45.55 3.28
70 71 8.141835 GTTTTGAGAAAACTATGTTGCCAAAT 57.858 30.769 4.96 0.00 45.55 2.32
71 72 8.611757 GTTTTGAGAAAACTATGTTGCCAAATT 58.388 29.630 4.96 0.00 45.55 1.82
72 73 9.823647 TTTTGAGAAAACTATGTTGCCAAATTA 57.176 25.926 0.00 0.00 0.00 1.40
73 74 9.474920 TTTGAGAAAACTATGTTGCCAAATTAG 57.525 29.630 0.00 0.00 0.00 1.73
74 75 7.601856 TGAGAAAACTATGTTGCCAAATTAGG 58.398 34.615 1.42 0.00 0.00 2.69
75 76 7.450014 TGAGAAAACTATGTTGCCAAATTAGGA 59.550 33.333 0.00 0.00 0.00 2.94
76 77 8.189119 AGAAAACTATGTTGCCAAATTAGGAA 57.811 30.769 0.00 0.00 0.00 3.36
77 78 8.815912 AGAAAACTATGTTGCCAAATTAGGAAT 58.184 29.630 0.00 0.00 0.00 3.01
78 79 9.435688 GAAAACTATGTTGCCAAATTAGGAATT 57.564 29.630 0.00 0.00 0.00 2.17
81 82 8.823220 ACTATGTTGCCAAATTAGGAATTAGT 57.177 30.769 0.00 0.00 0.00 2.24
82 83 9.914834 ACTATGTTGCCAAATTAGGAATTAGTA 57.085 29.630 0.00 0.00 0.00 1.82
84 85 8.588290 ATGTTGCCAAATTAGGAATTAGTACA 57.412 30.769 0.00 0.00 0.00 2.90
85 86 8.410673 TGTTGCCAAATTAGGAATTAGTACAA 57.589 30.769 0.00 0.00 0.00 2.41
86 87 8.861086 TGTTGCCAAATTAGGAATTAGTACAAA 58.139 29.630 0.00 0.00 0.00 2.83
87 88 9.699703 GTTGCCAAATTAGGAATTAGTACAAAA 57.300 29.630 0.00 0.00 0.00 2.44
126 127 9.384849 AGCATACATATAGATATTAGATGGCCA 57.615 33.333 8.56 8.56 0.00 5.36
127 128 9.650539 GCATACATATAGATATTAGATGGCCAG 57.349 37.037 13.05 0.00 0.00 4.85
131 132 9.944079 ACATATAGATATTAGATGGCCAGTACT 57.056 33.333 13.05 13.08 0.00 2.73
134 135 6.783708 AGATATTAGATGGCCAGTACTAGC 57.216 41.667 13.05 4.53 0.00 3.42
135 136 6.256819 AGATATTAGATGGCCAGTACTAGCA 58.743 40.000 13.05 6.96 0.00 3.49
136 137 6.726299 AGATATTAGATGGCCAGTACTAGCAA 59.274 38.462 13.05 3.98 0.00 3.91
137 138 4.672587 TTAGATGGCCAGTACTAGCAAG 57.327 45.455 13.05 0.00 0.00 4.01
138 139 2.752030 AGATGGCCAGTACTAGCAAGA 58.248 47.619 13.05 0.00 0.00 3.02
139 140 3.312890 AGATGGCCAGTACTAGCAAGAT 58.687 45.455 13.05 3.79 0.00 2.40
140 141 3.713764 AGATGGCCAGTACTAGCAAGATT 59.286 43.478 13.05 0.00 0.00 2.40
141 142 4.164988 AGATGGCCAGTACTAGCAAGATTT 59.835 41.667 13.05 0.00 0.00 2.17
142 143 3.609853 TGGCCAGTACTAGCAAGATTTG 58.390 45.455 15.30 0.00 0.00 2.32
143 144 3.263170 TGGCCAGTACTAGCAAGATTTGA 59.737 43.478 15.30 0.00 0.00 2.69
144 145 4.080356 TGGCCAGTACTAGCAAGATTTGAT 60.080 41.667 15.30 0.00 0.00 2.57
145 146 4.513318 GGCCAGTACTAGCAAGATTTGATC 59.487 45.833 15.30 0.00 0.00 2.92
146 147 5.118990 GCCAGTACTAGCAAGATTTGATCA 58.881 41.667 8.52 0.00 0.00 2.92
147 148 5.586243 GCCAGTACTAGCAAGATTTGATCAA 59.414 40.000 8.52 3.38 0.00 2.57
148 149 6.238320 GCCAGTACTAGCAAGATTTGATCAAG 60.238 42.308 8.52 0.00 0.00 3.02
149 150 6.259608 CCAGTACTAGCAAGATTTGATCAAGG 59.740 42.308 8.41 0.00 0.00 3.61
150 151 5.819901 AGTACTAGCAAGATTTGATCAAGGC 59.180 40.000 8.41 8.73 0.00 4.35
151 152 3.950395 ACTAGCAAGATTTGATCAAGGCC 59.050 43.478 8.41 0.00 0.00 5.19
152 153 2.811410 AGCAAGATTTGATCAAGGCCA 58.189 42.857 5.01 0.00 0.00 5.36
153 154 3.371965 AGCAAGATTTGATCAAGGCCAT 58.628 40.909 5.01 0.00 0.00 4.40
154 155 4.539726 AGCAAGATTTGATCAAGGCCATA 58.460 39.130 5.01 0.00 0.00 2.74
155 156 4.583489 AGCAAGATTTGATCAAGGCCATAG 59.417 41.667 5.01 0.00 0.00 2.23
156 157 4.340381 GCAAGATTTGATCAAGGCCATAGT 59.660 41.667 5.01 0.00 0.00 2.12
157 158 5.532406 GCAAGATTTGATCAAGGCCATAGTA 59.468 40.000 5.01 0.00 0.00 1.82
158 159 6.039717 GCAAGATTTGATCAAGGCCATAGTAA 59.960 38.462 5.01 0.00 0.00 2.24
159 160 7.420800 CAAGATTTGATCAAGGCCATAGTAAC 58.579 38.462 5.01 0.00 0.00 2.50
160 161 6.662755 AGATTTGATCAAGGCCATAGTAACA 58.337 36.000 5.01 0.00 0.00 2.41
161 162 6.769822 AGATTTGATCAAGGCCATAGTAACAG 59.230 38.462 5.01 0.00 0.00 3.16
162 163 5.435686 TTGATCAAGGCCATAGTAACAGT 57.564 39.130 5.01 0.00 0.00 3.55
163 164 4.769688 TGATCAAGGCCATAGTAACAGTG 58.230 43.478 5.01 0.00 0.00 3.66
164 165 3.627395 TCAAGGCCATAGTAACAGTGG 57.373 47.619 5.01 0.00 36.09 4.00
165 166 2.238646 TCAAGGCCATAGTAACAGTGGG 59.761 50.000 5.01 0.00 33.58 4.61
166 167 1.966845 AGGCCATAGTAACAGTGGGT 58.033 50.000 5.01 0.00 33.58 4.51
167 168 2.275466 AGGCCATAGTAACAGTGGGTT 58.725 47.619 5.01 0.00 43.62 4.11
168 169 2.026262 AGGCCATAGTAACAGTGGGTTG 60.026 50.000 5.01 0.00 40.73 3.77
169 170 1.743394 GCCATAGTAACAGTGGGTTGC 59.257 52.381 0.00 0.00 40.73 4.17
170 171 2.878117 GCCATAGTAACAGTGGGTTGCA 60.878 50.000 0.00 0.00 43.66 4.08
171 172 3.620488 CCATAGTAACAGTGGGTTGCAT 58.380 45.455 0.00 0.00 43.66 3.96
172 173 4.016444 CCATAGTAACAGTGGGTTGCATT 58.984 43.478 0.00 0.00 43.66 3.56
173 174 4.462483 CCATAGTAACAGTGGGTTGCATTT 59.538 41.667 0.00 0.00 43.66 2.32
174 175 5.650266 CCATAGTAACAGTGGGTTGCATTTA 59.350 40.000 0.00 0.00 43.66 1.40
175 176 6.151985 CCATAGTAACAGTGGGTTGCATTTAA 59.848 38.462 0.00 0.00 43.66 1.52
176 177 7.147915 CCATAGTAACAGTGGGTTGCATTTAAT 60.148 37.037 0.00 0.00 43.66 1.40
177 178 8.898761 CATAGTAACAGTGGGTTGCATTTAATA 58.101 33.333 0.00 0.00 43.66 0.98
178 179 7.954666 AGTAACAGTGGGTTGCATTTAATAT 57.045 32.000 0.00 0.00 43.66 1.28
179 180 8.361169 AGTAACAGTGGGTTGCATTTAATATT 57.639 30.769 0.00 0.00 43.66 1.28
180 181 8.811994 AGTAACAGTGGGTTGCATTTAATATTT 58.188 29.630 0.00 0.00 43.66 1.40
181 182 7.903995 AACAGTGGGTTGCATTTAATATTTG 57.096 32.000 0.00 0.00 38.60 2.32
182 183 7.238486 ACAGTGGGTTGCATTTAATATTTGA 57.762 32.000 0.00 0.00 0.00 2.69
183 184 7.850193 ACAGTGGGTTGCATTTAATATTTGAT 58.150 30.769 0.00 0.00 0.00 2.57
184 185 7.765360 ACAGTGGGTTGCATTTAATATTTGATG 59.235 33.333 0.00 0.04 0.00 3.07
185 186 7.225145 CAGTGGGTTGCATTTAATATTTGATGG 59.775 37.037 0.00 0.00 0.00 3.51
186 187 6.482973 GTGGGTTGCATTTAATATTTGATGGG 59.517 38.462 0.00 0.00 0.00 4.00
187 188 6.157645 TGGGTTGCATTTAATATTTGATGGGT 59.842 34.615 0.00 0.00 0.00 4.51
188 189 6.482973 GGGTTGCATTTAATATTTGATGGGTG 59.517 38.462 0.00 0.00 0.00 4.61
189 190 6.482973 GGTTGCATTTAATATTTGATGGGTGG 59.517 38.462 0.00 0.00 0.00 4.61
190 191 6.172136 TGCATTTAATATTTGATGGGTGGG 57.828 37.500 0.00 0.00 0.00 4.61
191 192 5.664908 TGCATTTAATATTTGATGGGTGGGT 59.335 36.000 0.00 0.00 0.00 4.51
192 193 6.183360 TGCATTTAATATTTGATGGGTGGGTC 60.183 38.462 0.00 0.00 0.00 4.46
193 194 6.446318 CATTTAATATTTGATGGGTGGGTCG 58.554 40.000 0.00 0.00 0.00 4.79
194 195 2.656947 ATATTTGATGGGTGGGTCGG 57.343 50.000 0.00 0.00 0.00 4.79
195 196 1.585895 TATTTGATGGGTGGGTCGGA 58.414 50.000 0.00 0.00 0.00 4.55
196 197 0.255890 ATTTGATGGGTGGGTCGGAG 59.744 55.000 0.00 0.00 0.00 4.63
197 198 1.847798 TTTGATGGGTGGGTCGGAGG 61.848 60.000 0.00 0.00 0.00 4.30
198 199 2.687566 GATGGGTGGGTCGGAGGT 60.688 66.667 0.00 0.00 0.00 3.85
199 200 3.009115 ATGGGTGGGTCGGAGGTG 61.009 66.667 0.00 0.00 0.00 4.00
204 205 4.974438 TGGGTCGGAGGTGGCCTT 62.974 66.667 3.32 0.00 31.76 4.35
205 206 3.647771 GGGTCGGAGGTGGCCTTT 61.648 66.667 3.32 0.00 31.76 3.11
206 207 2.359975 GGTCGGAGGTGGCCTTTG 60.360 66.667 3.32 0.00 31.76 2.77
207 208 2.430367 GTCGGAGGTGGCCTTTGT 59.570 61.111 3.32 0.00 31.76 2.83
208 209 1.675219 GTCGGAGGTGGCCTTTGTA 59.325 57.895 3.32 0.00 31.76 2.41
209 210 0.391263 GTCGGAGGTGGCCTTTGTAG 60.391 60.000 3.32 0.00 31.76 2.74
210 211 0.543410 TCGGAGGTGGCCTTTGTAGA 60.543 55.000 3.32 0.00 31.76 2.59
211 212 0.391263 CGGAGGTGGCCTTTGTAGAC 60.391 60.000 3.32 0.00 31.76 2.59
212 213 0.690762 GGAGGTGGCCTTTGTAGACA 59.309 55.000 3.32 0.00 31.76 3.41
213 214 1.073284 GGAGGTGGCCTTTGTAGACAA 59.927 52.381 3.32 0.00 31.76 3.18
214 215 2.290960 GGAGGTGGCCTTTGTAGACAAT 60.291 50.000 3.32 0.00 35.55 2.71
215 216 2.749621 GAGGTGGCCTTTGTAGACAATG 59.250 50.000 3.32 0.00 35.55 2.82
217 218 1.818674 GTGGCCTTTGTAGACAATGGG 59.181 52.381 22.10 15.73 45.80 4.00
218 219 1.272425 TGGCCTTTGTAGACAATGGGG 60.272 52.381 22.10 13.86 45.80 4.96
219 220 1.272480 GGCCTTTGTAGACAATGGGGT 60.272 52.381 22.10 0.00 45.80 4.95
220 221 2.092323 GCCTTTGTAGACAATGGGGTC 58.908 52.381 22.10 7.99 45.80 4.46
222 223 3.814316 GCCTTTGTAGACAATGGGGTCTT 60.814 47.826 22.10 0.00 45.59 3.01
223 224 4.010349 CCTTTGTAGACAATGGGGTCTTC 58.990 47.826 16.06 0.00 45.59 2.87
224 225 4.263506 CCTTTGTAGACAATGGGGTCTTCT 60.264 45.833 16.06 0.00 45.59 2.85
225 226 4.553330 TTGTAGACAATGGGGTCTTCTC 57.447 45.455 0.72 0.00 45.59 2.87
226 227 2.838202 TGTAGACAATGGGGTCTTCTCC 59.162 50.000 0.72 0.00 45.59 3.71
227 228 2.350863 AGACAATGGGGTCTTCTCCT 57.649 50.000 0.00 0.00 45.59 3.69
228 229 2.192263 AGACAATGGGGTCTTCTCCTC 58.808 52.381 0.00 0.00 45.59 3.71
229 230 1.210722 GACAATGGGGTCTTCTCCTCC 59.789 57.143 0.00 0.00 34.92 4.30
230 231 0.179000 CAATGGGGTCTTCTCCTCCG 59.821 60.000 0.00 0.00 0.00 4.63
231 232 1.627297 AATGGGGTCTTCTCCTCCGC 61.627 60.000 0.00 0.00 35.26 5.54
232 233 3.471806 GGGGTCTTCTCCTCCGCC 61.472 72.222 0.00 0.00 0.00 6.13
233 234 2.683933 GGGTCTTCTCCTCCGCCA 60.684 66.667 0.00 0.00 0.00 5.69
234 235 2.066999 GGGTCTTCTCCTCCGCCAT 61.067 63.158 0.00 0.00 0.00 4.40
235 236 1.627297 GGGTCTTCTCCTCCGCCATT 61.627 60.000 0.00 0.00 0.00 3.16
236 237 0.462759 GGTCTTCTCCTCCGCCATTG 60.463 60.000 0.00 0.00 0.00 2.82
237 238 0.462759 GTCTTCTCCTCCGCCATTGG 60.463 60.000 0.00 0.00 0.00 3.16
238 239 0.909610 TCTTCTCCTCCGCCATTGGT 60.910 55.000 4.26 0.00 0.00 3.67
239 240 0.462759 CTTCTCCTCCGCCATTGGTC 60.463 60.000 4.26 0.00 0.00 4.02
240 241 1.198094 TTCTCCTCCGCCATTGGTCA 61.198 55.000 4.26 0.00 0.00 4.02
241 242 1.153289 CTCCTCCGCCATTGGTCAG 60.153 63.158 4.26 0.00 0.00 3.51
242 243 2.124570 CCTCCGCCATTGGTCAGG 60.125 66.667 4.26 6.15 0.00 3.86
252 253 2.836154 TGGTCAGGCCAGGACAAC 59.164 61.111 23.84 11.68 43.61 3.32
253 254 1.770110 TGGTCAGGCCAGGACAACT 60.770 57.895 23.84 0.00 43.61 3.16
254 255 2.055689 TGGTCAGGCCAGGACAACTG 62.056 60.000 23.84 4.15 43.61 3.16
255 256 1.451936 GTCAGGCCAGGACAACTGT 59.548 57.895 19.38 0.00 46.06 3.55
256 257 0.179018 GTCAGGCCAGGACAACTGTT 60.179 55.000 19.38 0.00 46.06 3.16
257 258 0.179020 TCAGGCCAGGACAACTGTTG 60.179 55.000 18.44 18.44 46.06 3.33
258 259 0.179020 CAGGCCAGGACAACTGTTGA 60.179 55.000 26.00 0.00 46.06 3.18
259 260 0.773644 AGGCCAGGACAACTGTTGAT 59.226 50.000 26.00 10.91 46.06 2.57
260 261 1.985159 AGGCCAGGACAACTGTTGATA 59.015 47.619 26.00 0.00 46.06 2.15
261 262 2.578021 AGGCCAGGACAACTGTTGATAT 59.422 45.455 26.00 4.65 46.06 1.63
262 263 3.010584 AGGCCAGGACAACTGTTGATATT 59.989 43.478 26.00 4.27 46.06 1.28
263 264 3.763897 GGCCAGGACAACTGTTGATATTT 59.236 43.478 26.00 3.88 46.06 1.40
264 265 4.947388 GGCCAGGACAACTGTTGATATTTA 59.053 41.667 26.00 0.00 46.06 1.40
265 266 5.594317 GGCCAGGACAACTGTTGATATTTAT 59.406 40.000 26.00 2.36 46.06 1.40
266 267 6.770785 GGCCAGGACAACTGTTGATATTTATA 59.229 38.462 26.00 0.00 46.06 0.98
267 268 7.448469 GGCCAGGACAACTGTTGATATTTATAT 59.552 37.037 26.00 0.85 46.06 0.86
268 269 8.292448 GCCAGGACAACTGTTGATATTTATATG 58.708 37.037 26.00 10.68 46.06 1.78
269 270 8.786898 CCAGGACAACTGTTGATATTTATATGG 58.213 37.037 26.00 14.75 46.06 2.74
270 271 8.786898 CAGGACAACTGTTGATATTTATATGGG 58.213 37.037 26.00 0.00 42.42 4.00
271 272 8.723365 AGGACAACTGTTGATATTTATATGGGA 58.277 33.333 26.00 0.00 0.00 4.37
272 273 9.003658 GGACAACTGTTGATATTTATATGGGAG 57.996 37.037 26.00 0.00 0.00 4.30
273 274 9.778741 GACAACTGTTGATATTTATATGGGAGA 57.221 33.333 26.00 0.00 0.00 3.71
274 275 9.784531 ACAACTGTTGATATTTATATGGGAGAG 57.215 33.333 26.00 0.00 0.00 3.20
288 289 7.962995 ATATGGGAGAGATATACACGATTGT 57.037 36.000 0.00 0.00 40.02 2.71
289 290 6.672266 ATGGGAGAGATATACACGATTGTT 57.328 37.500 0.00 0.00 37.15 2.83
290 291 5.842907 TGGGAGAGATATACACGATTGTTG 58.157 41.667 0.00 0.00 37.15 3.33
291 292 5.596772 TGGGAGAGATATACACGATTGTTGA 59.403 40.000 0.00 0.00 37.15 3.18
292 293 6.097696 TGGGAGAGATATACACGATTGTTGAA 59.902 38.462 0.00 0.00 37.15 2.69
293 294 7.155328 GGGAGAGATATACACGATTGTTGAAT 58.845 38.462 0.00 0.00 37.15 2.57
294 295 7.329717 GGGAGAGATATACACGATTGTTGAATC 59.670 40.741 0.00 0.00 37.15 2.52
295 296 7.867909 GGAGAGATATACACGATTGTTGAATCA 59.132 37.037 0.00 0.00 38.35 2.57
296 297 9.416794 GAGAGATATACACGATTGTTGAATCAT 57.583 33.333 0.00 0.00 38.35 2.45
297 298 9.201127 AGAGATATACACGATTGTTGAATCATG 57.799 33.333 0.00 0.00 37.70 3.07
298 299 8.315391 AGATATACACGATTGTTGAATCATGG 57.685 34.615 0.00 0.00 36.32 3.66
299 300 8.150296 AGATATACACGATTGTTGAATCATGGA 58.850 33.333 0.00 0.00 36.32 3.41
300 301 4.952262 ACACGATTGTTGAATCATGGAG 57.048 40.909 0.00 0.00 36.32 3.86
301 302 4.326826 ACACGATTGTTGAATCATGGAGT 58.673 39.130 0.00 0.00 36.32 3.85
302 303 5.487433 ACACGATTGTTGAATCATGGAGTA 58.513 37.500 0.00 0.00 36.32 2.59
303 304 5.351465 ACACGATTGTTGAATCATGGAGTAC 59.649 40.000 0.00 0.00 36.32 2.73
304 305 5.351189 CACGATTGTTGAATCATGGAGTACA 59.649 40.000 0.00 0.00 38.35 2.90
305 306 6.037500 CACGATTGTTGAATCATGGAGTACAT 59.962 38.462 0.00 0.00 38.35 2.29
306 307 6.258727 ACGATTGTTGAATCATGGAGTACATC 59.741 38.462 0.00 0.00 38.35 3.06
307 308 6.293081 CGATTGTTGAATCATGGAGTACATCC 60.293 42.308 0.00 0.00 42.22 3.51
308 309 6.769822 GATTGTTGAATCATGGAGTACATCCT 59.230 38.462 11.21 0.00 42.04 3.24
309 310 7.255035 GATTGTTGAATCATGGAGTACATCCTG 60.255 40.741 11.21 7.96 42.04 3.86
323 324 9.036980 GGAGTACATCCTGACTAATATAATGGT 57.963 37.037 0.00 0.00 45.64 3.55
328 329 9.159254 ACATCCTGACTAATATAATGGTTGAGA 57.841 33.333 0.00 0.00 0.00 3.27
343 344 8.812513 AATGGTTGAGATTCTGATGTAAATGA 57.187 30.769 0.00 0.00 0.00 2.57
344 345 7.854557 TGGTTGAGATTCTGATGTAAATGAG 57.145 36.000 0.00 0.00 0.00 2.90
345 346 7.397221 TGGTTGAGATTCTGATGTAAATGAGT 58.603 34.615 0.00 0.00 0.00 3.41
346 347 8.539544 TGGTTGAGATTCTGATGTAAATGAGTA 58.460 33.333 0.00 0.00 0.00 2.59
347 348 9.039870 GGTTGAGATTCTGATGTAAATGAGTAG 57.960 37.037 0.00 0.00 0.00 2.57
348 349 9.809096 GTTGAGATTCTGATGTAAATGAGTAGA 57.191 33.333 0.00 0.00 0.00 2.59
362 363 9.474920 GTAAATGAGTAGAAGAGATTCTGATGG 57.525 37.037 0.81 0.00 32.72 3.51
363 364 6.669125 ATGAGTAGAAGAGATTCTGATGGG 57.331 41.667 0.81 0.00 32.72 4.00
364 365 4.343526 TGAGTAGAAGAGATTCTGATGGGC 59.656 45.833 0.81 0.00 32.72 5.36
365 366 4.293494 AGTAGAAGAGATTCTGATGGGCA 58.707 43.478 0.81 0.00 32.72 5.36
366 367 3.842007 AGAAGAGATTCTGATGGGCAG 57.158 47.619 0.00 0.00 46.31 4.85
367 368 2.158784 AGAAGAGATTCTGATGGGCAGC 60.159 50.000 0.00 0.00 44.52 5.25
368 369 0.106335 AGAGATTCTGATGGGCAGCG 59.894 55.000 0.00 0.00 44.52 5.18
369 370 0.179062 GAGATTCTGATGGGCAGCGT 60.179 55.000 0.00 0.00 44.52 5.07
370 371 0.179062 AGATTCTGATGGGCAGCGTC 60.179 55.000 0.00 0.00 44.52 5.19
371 372 1.493950 GATTCTGATGGGCAGCGTCG 61.494 60.000 0.00 0.00 44.52 5.12
372 373 2.244117 ATTCTGATGGGCAGCGTCGT 62.244 55.000 0.00 0.00 44.52 4.34
373 374 2.835701 TTCTGATGGGCAGCGTCGTC 62.836 60.000 0.00 0.00 44.52 4.20
374 375 4.794439 TGATGGGCAGCGTCGTCG 62.794 66.667 0.00 0.00 40.37 5.12
375 376 4.492160 GATGGGCAGCGTCGTCGA 62.492 66.667 6.17 0.00 39.71 4.20
376 377 4.498520 ATGGGCAGCGTCGTCGAG 62.499 66.667 6.17 0.00 39.71 4.04
378 379 3.807538 GGGCAGCGTCGTCGAGTA 61.808 66.667 6.17 0.00 39.71 2.59
379 380 2.576317 GGCAGCGTCGTCGAGTAC 60.576 66.667 6.17 0.00 39.71 2.73
380 381 2.479650 GCAGCGTCGTCGAGTACT 59.520 61.111 6.17 0.00 39.71 2.73
381 382 1.580639 GCAGCGTCGTCGAGTACTC 60.581 63.158 13.18 13.18 39.71 2.59
382 383 1.060622 CAGCGTCGTCGAGTACTCC 59.939 63.158 17.23 3.24 39.71 3.85
383 384 1.375140 AGCGTCGTCGAGTACTCCA 60.375 57.895 17.23 0.89 39.71 3.86
384 385 0.952497 AGCGTCGTCGAGTACTCCAA 60.952 55.000 17.23 2.90 39.71 3.53
385 386 0.098376 GCGTCGTCGAGTACTCCAAT 59.902 55.000 17.23 0.00 39.71 3.16
386 387 1.811428 CGTCGTCGAGTACTCCAATG 58.189 55.000 17.23 10.86 39.71 2.82
387 388 1.546834 GTCGTCGAGTACTCCAATGC 58.453 55.000 17.23 1.87 0.00 3.56
388 389 1.135489 GTCGTCGAGTACTCCAATGCA 60.135 52.381 17.23 0.00 0.00 3.96
389 390 1.542472 TCGTCGAGTACTCCAATGCAA 59.458 47.619 17.23 0.00 0.00 4.08
390 391 2.165641 TCGTCGAGTACTCCAATGCAAT 59.834 45.455 17.23 0.00 0.00 3.56
391 392 2.930040 CGTCGAGTACTCCAATGCAATT 59.070 45.455 17.23 0.00 36.63 2.32
392 393 3.370978 CGTCGAGTACTCCAATGCAATTT 59.629 43.478 17.23 0.00 31.22 1.82
393 394 4.492570 CGTCGAGTACTCCAATGCAATTTC 60.493 45.833 17.23 0.00 31.22 2.17
394 395 3.616821 TCGAGTACTCCAATGCAATTTCG 59.383 43.478 17.23 1.79 31.22 3.46
407 408 7.382218 CCAATGCAATTTCGGAACTATAATTCC 59.618 37.037 2.73 2.73 38.88 3.01
417 418 9.543231 TTCGGAACTATAATTCCCTAGTATCAT 57.457 33.333 7.37 0.00 44.72 2.45
426 427 2.895404 TCCCTAGTATCATAACGGGCAC 59.105 50.000 0.00 0.00 0.00 5.01
430 431 1.126079 GTATCATAACGGGCACGACG 58.874 55.000 19.19 0.61 44.60 5.12
440 441 2.322081 GGCACGACGCAAAGCCTTA 61.322 57.895 12.25 0.00 45.17 2.69
441 442 1.644786 GGCACGACGCAAAGCCTTAT 61.645 55.000 12.25 0.00 45.17 1.73
443 444 1.882198 CACGACGCAAAGCCTTATTG 58.118 50.000 0.00 0.00 0.00 1.90
447 448 0.243636 ACGCAAAGCCTTATTGGTGC 59.756 50.000 0.00 0.00 38.35 5.01
450 451 1.134995 GCAAAGCCTTATTGGTGCCTC 60.135 52.381 0.00 0.00 38.35 4.70
597 633 3.436704 GCTTTTAAGCCTTTGCCATTTCC 59.563 43.478 3.05 0.00 46.20 3.13
602 638 2.500580 AGCCTTTGCCATTTCCGAAGG 61.501 52.381 3.55 3.55 45.89 3.46
638 674 9.661563 TGATTACTTAGACCGTGATATTTTTGT 57.338 29.630 0.00 0.00 0.00 2.83
641 677 9.926158 TTACTTAGACCGTGATATTTTTGTACA 57.074 29.630 0.00 0.00 0.00 2.90
647 683 8.385111 AGACCGTGATATTTTTGTACAAATACG 58.615 33.333 21.17 20.30 32.61 3.06
648 684 7.465989 ACCGTGATATTTTTGTACAAATACGG 58.534 34.615 30.04 30.04 39.43 4.02
714 756 2.097825 AGATCCAAAGGTGCAGATTGC 58.902 47.619 0.00 0.00 45.29 3.56
739 781 2.223758 GGAATCTGGTAGCGGTAGACAC 60.224 54.545 0.00 0.00 0.00 3.67
751 793 0.676151 GTAGACACGACGAGGGAGGT 60.676 60.000 0.00 0.00 0.00 3.85
752 794 0.675837 TAGACACGACGAGGGAGGTG 60.676 60.000 0.00 0.00 36.50 4.00
754 796 2.675423 CACGACGAGGGAGGTGGA 60.675 66.667 0.00 0.00 0.00 4.02
755 797 2.116772 ACGACGAGGGAGGTGGAA 59.883 61.111 0.00 0.00 0.00 3.53
757 799 1.977544 CGACGAGGGAGGTGGAACT 60.978 63.158 0.00 0.00 36.74 3.01
758 800 1.533469 CGACGAGGGAGGTGGAACTT 61.533 60.000 0.00 0.00 36.74 2.66
765 807 0.906066 GGAGGTGGAACTTCTCTCCC 59.094 60.000 11.81 0.00 43.35 4.30
766 808 0.906066 GAGGTGGAACTTCTCTCCCC 59.094 60.000 0.00 0.00 40.22 4.81
767 809 0.547954 AGGTGGAACTTCTCTCCCCC 60.548 60.000 0.00 0.00 36.74 5.40
768 810 1.597461 GTGGAACTTCTCTCCCCCG 59.403 63.158 0.00 0.00 31.32 5.73
810 874 3.721706 CACCTCACTGCCCCTCCC 61.722 72.222 0.00 0.00 0.00 4.30
893 957 2.660064 GCCTTCTCCTCCGCTTCCA 61.660 63.158 0.00 0.00 0.00 3.53
907 972 3.383761 CGCTTCCAACAAAGAGCAATTT 58.616 40.909 0.00 0.00 34.90 1.82
908 973 4.545610 CGCTTCCAACAAAGAGCAATTTA 58.454 39.130 0.00 0.00 34.90 1.40
985 1050 4.349503 TGCGCCCACCAGATGCTT 62.350 61.111 4.18 0.00 0.00 3.91
1015 1080 1.013596 CGTAATGGCCTTCGCAATGA 58.986 50.000 3.32 0.00 36.38 2.57
1023 1088 1.162800 CCTTCGCAATGAGCCTAGCC 61.163 60.000 0.00 0.00 41.38 3.93
1389 1454 2.159085 GCAGTCGTTTGTAGAGGGCTAT 60.159 50.000 0.00 0.00 0.00 2.97
1449 1514 2.146342 CTGAACCAGCTCGACATGTTT 58.854 47.619 0.00 0.00 0.00 2.83
1461 1526 1.178534 ACATGTTTGGCGTTCAGGGG 61.179 55.000 0.00 0.00 0.00 4.79
1478 1543 4.250305 GGACGCACTGGTGGTGGT 62.250 66.667 2.84 0.00 45.44 4.16
1488 1553 2.224523 ACTGGTGGTGGTGTACAATCAG 60.225 50.000 0.00 0.00 0.00 2.90
1498 1563 3.119245 GGTGTACAATCAGCTTCTCCGTA 60.119 47.826 0.00 0.00 33.69 4.02
1499 1564 3.858238 GTGTACAATCAGCTTCTCCGTAC 59.142 47.826 0.00 0.00 0.00 3.67
1503 1568 3.511934 ACAATCAGCTTCTCCGTACTCTT 59.488 43.478 0.00 0.00 0.00 2.85
1564 1629 0.533755 GGAGATGAGCAATCGGGGTG 60.534 60.000 0.00 0.00 40.54 4.61
1593 1658 1.263217 GACCTTGCCACTTACAACACG 59.737 52.381 0.00 0.00 0.00 4.49
1596 1661 1.673920 CTTGCCACTTACAACACGGTT 59.326 47.619 0.00 0.00 0.00 4.44
1599 1664 3.478509 TGCCACTTACAACACGGTTATT 58.521 40.909 0.00 0.00 0.00 1.40
1728 1793 0.685660 GTTTTGTCGAGGAGGGGAGT 59.314 55.000 0.00 0.00 0.00 3.85
1731 1796 2.544844 TTGTCGAGGAGGGGAGTATT 57.455 50.000 0.00 0.00 0.00 1.89
1755 1820 1.606531 GGCACTGAGGATGAAGGCT 59.393 57.895 0.00 0.00 0.00 4.58
1785 1850 0.611618 AAATGGGATGCTCGCCAACA 60.612 50.000 0.00 0.00 0.00 3.33
1845 1910 0.537188 TGGGAAGAGTCGAAGATGCC 59.463 55.000 0.00 0.00 40.67 4.40
1904 1969 2.105006 CCTGACCAGGTCACATTCAG 57.895 55.000 19.21 7.71 43.61 3.02
1915 1980 6.373779 CAGGTCACATTCAGTACATTTGTTC 58.626 40.000 0.00 0.00 0.00 3.18
1932 1997 2.964464 TGTTCATGGTCTGTGCCAAAAT 59.036 40.909 0.00 0.00 42.48 1.82
2049 2114 5.499139 TGTGTCAAAATGGAGAACTTGAC 57.501 39.130 6.81 6.81 45.07 3.18
2086 2151 6.043590 AGTCATAAATCAGATGGTGGATAGCA 59.956 38.462 0.00 0.00 38.89 3.49
2175 2240 2.050077 GCCTTGAACCTTGCACGC 60.050 61.111 0.00 0.00 0.00 5.34
2184 2249 1.737735 CCTTGCACGCGATCTGACA 60.738 57.895 15.93 0.38 0.00 3.58
2241 2306 6.211184 TCAACATTTTGATAGATGCCCTTTGT 59.789 34.615 0.00 0.00 36.79 2.83
2439 2504 9.698309 AGCACAGTGACATATAACACTATAATC 57.302 33.333 4.15 3.64 44.07 1.75
3375 3445 7.394816 AGATTACTATGCTTGTTACTTGGTGT 58.605 34.615 0.00 0.00 0.00 4.16
3656 3726 3.664107 TCTCTTTCCATGAACCGTCTTG 58.336 45.455 0.00 0.00 0.00 3.02
3663 3733 2.494059 CATGAACCGTCTTGGAACACT 58.506 47.619 0.00 0.00 42.00 3.55
3667 3737 1.227823 CCGTCTTGGAACACTGGCA 60.228 57.895 0.00 0.00 42.00 4.92
3696 3766 4.398247 CGCTTCAGATTTAGCTTGTGAAC 58.602 43.478 0.00 0.00 35.25 3.18
3738 3808 0.980754 TATGCGGCCAGAAAGAGGGA 60.981 55.000 2.24 0.00 0.00 4.20
3765 3835 2.408271 TAAGATGCCAGGTTGAGCAG 57.592 50.000 0.00 0.00 43.38 4.24
3943 4013 2.099098 GGCCATGGATTCCTAACAAACG 59.901 50.000 18.40 0.00 0.00 3.60
3955 4025 1.583054 AACAAACGGCTCACTGACTC 58.417 50.000 0.00 0.00 0.00 3.36
3957 4027 1.143305 CAAACGGCTCACTGACTCAG 58.857 55.000 4.36 4.36 37.52 3.35
3958 4028 1.040646 AAACGGCTCACTGACTCAGA 58.959 50.000 13.25 0.00 35.18 3.27
4010 4082 1.884579 AGCTTGCTGTGTTGAATGAGG 59.115 47.619 0.00 0.00 0.00 3.86
4011 4083 1.068055 GCTTGCTGTGTTGAATGAGGG 60.068 52.381 0.00 0.00 0.00 4.30
4012 4084 0.961019 TTGCTGTGTTGAATGAGGGC 59.039 50.000 0.00 0.00 0.00 5.19
4013 4085 0.178995 TGCTGTGTTGAATGAGGGCA 60.179 50.000 0.00 0.00 0.00 5.36
4014 4086 0.961019 GCTGTGTTGAATGAGGGCAA 59.039 50.000 0.00 0.00 0.00 4.52
4015 4087 1.340889 GCTGTGTTGAATGAGGGCAAA 59.659 47.619 0.00 0.00 0.00 3.68
4016 4088 2.028748 GCTGTGTTGAATGAGGGCAAAT 60.029 45.455 0.00 0.00 0.00 2.32
4017 4089 3.555586 GCTGTGTTGAATGAGGGCAAATT 60.556 43.478 0.00 0.00 0.00 1.82
4018 4090 4.634199 CTGTGTTGAATGAGGGCAAATTT 58.366 39.130 0.00 0.00 0.00 1.82
4019 4091 4.378774 TGTGTTGAATGAGGGCAAATTTG 58.621 39.130 14.03 14.03 0.00 2.32
4020 4092 4.100653 TGTGTTGAATGAGGGCAAATTTGA 59.899 37.500 22.31 0.36 0.00 2.69
4021 4093 4.448732 GTGTTGAATGAGGGCAAATTTGAC 59.551 41.667 22.31 19.34 34.70 3.18
4022 4094 4.100653 TGTTGAATGAGGGCAAATTTGACA 59.899 37.500 25.05 15.78 38.18 3.58
4023 4095 4.952071 TGAATGAGGGCAAATTTGACAA 57.048 36.364 25.05 10.72 38.18 3.18
4024 4096 5.486735 TGAATGAGGGCAAATTTGACAAT 57.513 34.783 25.05 13.20 38.18 2.71
4025 4097 5.867330 TGAATGAGGGCAAATTTGACAATT 58.133 33.333 25.05 19.34 38.18 2.32
4026 4098 6.297582 TGAATGAGGGCAAATTTGACAATTT 58.702 32.000 25.05 12.43 42.37 1.82
4027 4099 6.771749 TGAATGAGGGCAAATTTGACAATTTT 59.228 30.769 25.05 12.77 40.09 1.82
4028 4100 6.563222 ATGAGGGCAAATTTGACAATTTTG 57.437 33.333 25.05 22.48 40.09 2.44
4029 4101 5.678583 TGAGGGCAAATTTGACAATTTTGA 58.321 33.333 27.56 12.06 40.09 2.69
4030 4102 5.526846 TGAGGGCAAATTTGACAATTTTGAC 59.473 36.000 27.56 25.82 40.09 3.18
4031 4103 4.821260 AGGGCAAATTTGACAATTTTGACC 59.179 37.500 33.90 33.90 40.09 4.02
4032 4104 4.821260 GGGCAAATTTGACAATTTTGACCT 59.179 37.500 33.72 5.89 40.09 3.85
4033 4105 5.299028 GGGCAAATTTGACAATTTTGACCTT 59.701 36.000 33.72 5.33 40.09 3.50
4034 4106 6.200808 GGCAAATTTGACAATTTTGACCTTG 58.799 36.000 27.56 10.74 40.09 3.61
4035 4107 6.200808 GCAAATTTGACAATTTTGACCTTGG 58.799 36.000 27.56 9.61 40.09 3.61
4036 4108 6.727215 CAAATTTGACAATTTTGACCTTGGG 58.273 36.000 22.40 2.00 40.09 4.12
4037 4109 5.885449 ATTTGACAATTTTGACCTTGGGA 57.115 34.783 0.00 0.00 0.00 4.37
4038 4110 4.664150 TTGACAATTTTGACCTTGGGAC 57.336 40.909 0.00 0.00 0.00 4.46
4039 4111 2.621055 TGACAATTTTGACCTTGGGACG 59.379 45.455 0.00 0.00 0.00 4.79
4040 4112 2.882137 GACAATTTTGACCTTGGGACGA 59.118 45.455 0.00 0.00 0.00 4.20
4041 4113 3.292460 ACAATTTTGACCTTGGGACGAA 58.708 40.909 0.00 0.00 0.00 3.85
4042 4114 3.702045 ACAATTTTGACCTTGGGACGAAA 59.298 39.130 0.00 4.51 35.83 3.46
4043 4115 4.343814 ACAATTTTGACCTTGGGACGAAAT 59.656 37.500 7.91 7.91 40.96 2.17
4044 4116 4.783764 ATTTTGACCTTGGGACGAAATC 57.216 40.909 7.91 0.00 37.02 2.17
4045 4117 2.940994 TTGACCTTGGGACGAAATCA 57.059 45.000 0.00 0.00 0.00 2.57
4046 4118 2.940994 TGACCTTGGGACGAAATCAA 57.059 45.000 0.00 0.00 0.00 2.57
4047 4119 3.216187 TGACCTTGGGACGAAATCAAA 57.784 42.857 0.00 0.00 0.00 2.69
4048 4120 3.761897 TGACCTTGGGACGAAATCAAAT 58.238 40.909 0.00 0.00 0.00 2.32
4049 4121 3.756434 TGACCTTGGGACGAAATCAAATC 59.244 43.478 0.00 0.00 0.00 2.17
4050 4122 3.756434 GACCTTGGGACGAAATCAAATCA 59.244 43.478 0.00 0.00 0.00 2.57
4051 4123 3.506067 ACCTTGGGACGAAATCAAATCAC 59.494 43.478 0.00 0.00 0.00 3.06
4052 4124 3.505680 CCTTGGGACGAAATCAAATCACA 59.494 43.478 0.00 0.00 0.00 3.58
4053 4125 4.379813 CCTTGGGACGAAATCAAATCACAG 60.380 45.833 0.00 0.00 0.00 3.66
4054 4126 4.014569 TGGGACGAAATCAAATCACAGA 57.985 40.909 0.00 0.00 0.00 3.41
4055 4127 4.393834 TGGGACGAAATCAAATCACAGAA 58.606 39.130 0.00 0.00 0.00 3.02
4056 4128 5.009631 TGGGACGAAATCAAATCACAGAAT 58.990 37.500 0.00 0.00 0.00 2.40
4057 4129 5.106197 TGGGACGAAATCAAATCACAGAATG 60.106 40.000 0.00 0.00 46.00 2.67
4058 4130 5.123820 GGGACGAAATCAAATCACAGAATGA 59.876 40.000 0.00 0.00 43.13 2.57
4059 4131 6.349280 GGGACGAAATCAAATCACAGAATGAA 60.349 38.462 0.00 0.00 41.93 2.57
4060 4132 6.524586 GGACGAAATCAAATCACAGAATGAAC 59.475 38.462 0.00 0.00 41.93 3.18
4061 4133 7.206981 ACGAAATCAAATCACAGAATGAACT 57.793 32.000 0.00 0.00 41.93 3.01
4062 4134 8.322906 ACGAAATCAAATCACAGAATGAACTA 57.677 30.769 0.00 0.00 41.93 2.24
4063 4135 8.230486 ACGAAATCAAATCACAGAATGAACTAC 58.770 33.333 0.00 0.00 41.93 2.73
4064 4136 7.693951 CGAAATCAAATCACAGAATGAACTACC 59.306 37.037 0.00 0.00 41.93 3.18
4065 4137 7.396540 AATCAAATCACAGAATGAACTACCC 57.603 36.000 0.00 0.00 41.93 3.69
4066 4138 4.935205 TCAAATCACAGAATGAACTACCCG 59.065 41.667 0.00 0.00 41.93 5.28
4067 4139 4.553330 AATCACAGAATGAACTACCCGT 57.447 40.909 0.00 0.00 41.93 5.28
4068 4140 3.313012 TCACAGAATGAACTACCCGTG 57.687 47.619 0.00 0.00 39.69 4.94
4069 4141 2.894765 TCACAGAATGAACTACCCGTGA 59.105 45.455 0.00 0.00 39.69 4.35
4070 4142 3.322541 TCACAGAATGAACTACCCGTGAA 59.677 43.478 0.00 0.00 39.69 3.18
4071 4143 4.062293 CACAGAATGAACTACCCGTGAAA 58.938 43.478 0.00 0.00 39.69 2.69
4072 4144 4.062991 ACAGAATGAACTACCCGTGAAAC 58.937 43.478 0.00 0.00 39.69 2.78
4073 4145 4.202326 ACAGAATGAACTACCCGTGAAACT 60.202 41.667 0.00 0.00 39.69 2.66
4074 4146 5.011329 ACAGAATGAACTACCCGTGAAACTA 59.989 40.000 0.00 0.00 39.69 2.24
4075 4147 6.106673 CAGAATGAACTACCCGTGAAACTAT 58.893 40.000 0.00 0.00 39.69 2.12
4076 4148 6.594159 CAGAATGAACTACCCGTGAAACTATT 59.406 38.462 0.00 0.00 39.69 1.73
4077 4149 7.119262 CAGAATGAACTACCCGTGAAACTATTT 59.881 37.037 0.00 0.00 39.69 1.40
4078 4150 6.980051 ATGAACTACCCGTGAAACTATTTC 57.020 37.500 0.00 0.00 40.08 2.17
4079 4151 5.856156 TGAACTACCCGTGAAACTATTTCA 58.144 37.500 0.00 0.00 46.68 2.69
4088 4160 3.591023 TGAAACTATTTCACGCCGATGA 58.409 40.909 0.00 0.00 44.21 2.92
4089 4161 4.188462 TGAAACTATTTCACGCCGATGAT 58.812 39.130 0.00 0.00 44.21 2.45
4090 4162 4.270084 TGAAACTATTTCACGCCGATGATC 59.730 41.667 0.00 0.00 44.21 2.92
4091 4163 3.735237 ACTATTTCACGCCGATGATCT 57.265 42.857 0.00 0.00 0.00 2.75
4092 4164 4.060038 ACTATTTCACGCCGATGATCTT 57.940 40.909 0.00 0.00 0.00 2.40
4093 4165 4.442706 ACTATTTCACGCCGATGATCTTT 58.557 39.130 0.00 0.00 0.00 2.52
4094 4166 4.876107 ACTATTTCACGCCGATGATCTTTT 59.124 37.500 0.00 0.00 0.00 2.27
4095 4167 4.701956 ATTTCACGCCGATGATCTTTTT 57.298 36.364 0.00 0.00 0.00 1.94
4096 4168 3.469899 TTCACGCCGATGATCTTTTTG 57.530 42.857 0.00 0.00 0.00 2.44
4097 4169 2.422597 TCACGCCGATGATCTTTTTGT 58.577 42.857 0.00 0.00 0.00 2.83
4098 4170 2.159430 TCACGCCGATGATCTTTTTGTG 59.841 45.455 0.00 0.00 0.00 3.33
4099 4171 2.095768 CACGCCGATGATCTTTTTGTGT 60.096 45.455 0.00 0.00 0.00 3.72
4100 4172 3.124466 CACGCCGATGATCTTTTTGTGTA 59.876 43.478 0.00 0.00 0.00 2.90
4101 4173 3.370978 ACGCCGATGATCTTTTTGTGTAG 59.629 43.478 0.00 0.00 0.00 2.74
4102 4174 3.685058 GCCGATGATCTTTTTGTGTAGC 58.315 45.455 0.00 0.00 0.00 3.58
4103 4175 3.785505 GCCGATGATCTTTTTGTGTAGCG 60.786 47.826 0.00 0.00 0.00 4.26
4104 4176 3.345714 CGATGATCTTTTTGTGTAGCGC 58.654 45.455 0.00 0.00 0.00 5.92
4105 4177 3.685058 GATGATCTTTTTGTGTAGCGCC 58.315 45.455 2.29 0.00 0.00 6.53
4106 4178 1.810151 TGATCTTTTTGTGTAGCGCCC 59.190 47.619 2.29 0.00 0.00 6.13
4107 4179 0.802494 ATCTTTTTGTGTAGCGCCCG 59.198 50.000 2.29 0.00 0.00 6.13
4108 4180 1.442017 CTTTTTGTGTAGCGCCCGC 60.442 57.895 2.29 4.20 42.33 6.13
4109 4181 2.796245 CTTTTTGTGTAGCGCCCGCC 62.796 60.000 2.29 0.00 43.17 6.13
4110 4182 4.627801 TTTGTGTAGCGCCCGCCA 62.628 61.111 2.29 0.00 43.17 5.69
4142 4214 3.833645 CCTACGGTGCAGCGCCTA 61.834 66.667 35.78 21.25 0.00 3.93
4143 4215 2.278857 CTACGGTGCAGCGCCTAG 60.279 66.667 35.78 25.87 0.00 3.02
4161 4233 3.443045 CTGGGGGCGTTGCACATC 61.443 66.667 0.00 0.00 30.93 3.06
4162 4234 3.925630 CTGGGGGCGTTGCACATCT 62.926 63.158 0.00 0.00 30.93 2.90
4163 4235 3.443045 GGGGGCGTTGCACATCTG 61.443 66.667 0.00 0.00 30.93 2.90
4164 4236 2.672996 GGGGCGTTGCACATCTGT 60.673 61.111 0.00 0.00 30.93 3.41
4165 4237 2.690778 GGGGCGTTGCACATCTGTC 61.691 63.158 0.00 0.00 30.93 3.51
4166 4238 2.690778 GGGCGTTGCACATCTGTCC 61.691 63.158 0.00 0.00 0.00 4.02
4167 4239 1.965930 GGCGTTGCACATCTGTCCA 60.966 57.895 0.00 0.00 0.00 4.02
4168 4240 1.207593 GCGTTGCACATCTGTCCAC 59.792 57.895 0.00 0.00 0.00 4.02
4169 4241 1.868997 CGTTGCACATCTGTCCACC 59.131 57.895 0.00 0.00 0.00 4.61
4170 4242 1.868997 GTTGCACATCTGTCCACCG 59.131 57.895 0.00 0.00 0.00 4.94
4171 4243 0.884704 GTTGCACATCTGTCCACCGT 60.885 55.000 0.00 0.00 0.00 4.83
4172 4244 0.884259 TTGCACATCTGTCCACCGTG 60.884 55.000 0.00 0.00 0.00 4.94
4173 4245 2.034879 GCACATCTGTCCACCGTGG 61.035 63.158 11.73 11.73 39.43 4.94
4174 4246 2.034879 CACATCTGTCCACCGTGGC 61.035 63.158 13.19 8.69 37.47 5.01
4175 4247 2.347114 CATCTGTCCACCGTGGCA 59.653 61.111 13.19 12.68 37.47 4.92
4176 4248 1.742880 CATCTGTCCACCGTGGCAG 60.743 63.158 24.71 24.71 40.56 4.85
4177 4249 3.612247 ATCTGTCCACCGTGGCAGC 62.612 63.158 25.37 14.67 39.70 5.25
4228 4300 2.436646 GTGCTAGGCGCCACACAT 60.437 61.111 30.68 15.04 38.05 3.21
4229 4301 2.040544 GTGCTAGGCGCCACACATT 61.041 57.895 30.68 14.37 38.05 2.71
4230 4302 1.303236 TGCTAGGCGCCACACATTT 60.303 52.632 31.54 8.51 38.05 2.32
4231 4303 0.035915 TGCTAGGCGCCACACATTTA 60.036 50.000 31.54 9.35 38.05 1.40
4232 4304 1.091537 GCTAGGCGCCACACATTTAA 58.908 50.000 31.54 0.72 0.00 1.52
4233 4305 1.470890 GCTAGGCGCCACACATTTAAA 59.529 47.619 31.54 0.00 0.00 1.52
4234 4306 2.477863 GCTAGGCGCCACACATTTAAAG 60.478 50.000 31.54 10.16 0.00 1.85
4235 4307 1.616159 AGGCGCCACACATTTAAAGT 58.384 45.000 31.54 0.00 0.00 2.66
4236 4308 1.269448 AGGCGCCACACATTTAAAGTG 59.731 47.619 31.54 13.08 42.56 3.16
4237 4309 1.059942 GCGCCACACATTTAAAGTGC 58.940 50.000 14.06 5.52 40.59 4.40
4238 4310 1.601663 GCGCCACACATTTAAAGTGCA 60.602 47.619 14.06 0.00 40.59 4.57
4239 4311 2.318578 CGCCACACATTTAAAGTGCAG 58.681 47.619 14.06 9.06 40.59 4.41
4240 4312 2.061028 GCCACACATTTAAAGTGCAGC 58.939 47.619 14.06 13.16 40.59 5.25
4241 4313 2.545532 GCCACACATTTAAAGTGCAGCA 60.546 45.455 17.68 0.00 40.59 4.41
4242 4314 3.052036 CCACACATTTAAAGTGCAGCAC 58.948 45.455 18.55 18.55 40.59 4.40
4243 4315 3.052036 CACACATTTAAAGTGCAGCACC 58.948 45.455 22.41 4.38 40.59 5.01
4244 4316 2.958355 ACACATTTAAAGTGCAGCACCT 59.042 40.909 22.41 12.20 40.59 4.00
4245 4317 3.243501 ACACATTTAAAGTGCAGCACCTG 60.244 43.478 22.41 11.99 40.59 4.00
4246 4318 2.297033 ACATTTAAAGTGCAGCACCTGG 59.703 45.455 22.41 7.54 34.49 4.45
4247 4319 0.673437 TTTAAAGTGCAGCACCTGGC 59.327 50.000 22.41 0.00 45.30 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.803201 TGTATTCAATTGCGTAAACAATGAAA 57.197 26.923 0.00 0.00 40.12 2.69
1 2 8.293157 TCTGTATTCAATTGCGTAAACAATGAA 58.707 29.630 0.00 8.63 40.12 2.57
2 3 7.811653 TCTGTATTCAATTGCGTAAACAATGA 58.188 30.769 0.00 0.00 40.12 2.57
3 4 7.218773 CCTCTGTATTCAATTGCGTAAACAATG 59.781 37.037 0.00 0.00 40.12 2.82
4 5 7.094377 ACCTCTGTATTCAATTGCGTAAACAAT 60.094 33.333 0.00 0.00 42.01 2.71
5 6 6.205853 ACCTCTGTATTCAATTGCGTAAACAA 59.794 34.615 0.00 0.00 0.00 2.83
6 7 5.703592 ACCTCTGTATTCAATTGCGTAAACA 59.296 36.000 0.00 0.29 0.00 2.83
7 8 6.178239 ACCTCTGTATTCAATTGCGTAAAC 57.822 37.500 0.00 0.00 0.00 2.01
8 9 6.811253 AACCTCTGTATTCAATTGCGTAAA 57.189 33.333 0.00 0.00 0.00 2.01
9 10 6.811253 AAACCTCTGTATTCAATTGCGTAA 57.189 33.333 0.00 0.00 0.00 3.18
10 11 6.811253 AAAACCTCTGTATTCAATTGCGTA 57.189 33.333 0.00 0.00 0.00 4.42
11 12 5.705609 AAAACCTCTGTATTCAATTGCGT 57.294 34.783 0.00 0.00 0.00 5.24
12 13 7.072177 TCTAAAACCTCTGTATTCAATTGCG 57.928 36.000 0.00 0.00 0.00 4.85
19 20 9.460906 CCGTAGTAATCTAAAACCTCTGTATTC 57.539 37.037 0.00 0.00 0.00 1.75
20 21 8.975295 ACCGTAGTAATCTAAAACCTCTGTATT 58.025 33.333 0.00 0.00 0.00 1.89
21 22 8.530804 ACCGTAGTAATCTAAAACCTCTGTAT 57.469 34.615 0.00 0.00 0.00 2.29
22 23 7.944729 ACCGTAGTAATCTAAAACCTCTGTA 57.055 36.000 0.00 0.00 0.00 2.74
23 24 6.847421 ACCGTAGTAATCTAAAACCTCTGT 57.153 37.500 0.00 0.00 0.00 3.41
24 25 8.440833 CAAAACCGTAGTAATCTAAAACCTCTG 58.559 37.037 0.00 0.00 0.00 3.35
25 26 8.370182 TCAAAACCGTAGTAATCTAAAACCTCT 58.630 33.333 0.00 0.00 0.00 3.69
26 27 8.538409 TCAAAACCGTAGTAATCTAAAACCTC 57.462 34.615 0.00 0.00 0.00 3.85
27 28 8.370182 TCTCAAAACCGTAGTAATCTAAAACCT 58.630 33.333 0.00 0.00 0.00 3.50
28 29 8.538409 TCTCAAAACCGTAGTAATCTAAAACC 57.462 34.615 0.00 0.00 0.00 3.27
41 42 8.809832 TGGCAACATAGTTTTCTCAAAACCGTA 61.810 37.037 8.00 0.00 46.85 4.02
42 43 8.072564 TGGCAACATAGTTTTCTCAAAACCGT 62.073 38.462 8.00 2.07 46.85 4.83
43 44 5.734786 TGGCAACATAGTTTTCTCAAAACCG 60.735 40.000 8.00 1.56 46.85 4.44
44 45 5.596845 TGGCAACATAGTTTTCTCAAAACC 58.403 37.500 8.00 0.00 46.85 3.27
61 62 9.699703 TTTTGTACTAATTCCTAATTTGGCAAC 57.300 29.630 0.00 0.00 30.13 4.17
100 101 9.384849 TGGCCATCTAATATCTATATGTATGCT 57.615 33.333 0.00 0.00 0.00 3.79
101 102 9.650539 CTGGCCATCTAATATCTATATGTATGC 57.349 37.037 5.51 0.00 0.00 3.14
105 106 9.944079 AGTACTGGCCATCTAATATCTATATGT 57.056 33.333 5.51 0.00 0.00 2.29
108 109 9.575868 GCTAGTACTGGCCATCTAATATCTATA 57.424 37.037 19.79 0.00 0.00 1.31
109 110 8.061920 TGCTAGTACTGGCCATCTAATATCTAT 58.938 37.037 26.23 0.00 36.12 1.98
110 111 7.410991 TGCTAGTACTGGCCATCTAATATCTA 58.589 38.462 26.23 2.06 36.12 1.98
111 112 6.256819 TGCTAGTACTGGCCATCTAATATCT 58.743 40.000 26.23 0.00 36.12 1.98
112 113 6.531503 TGCTAGTACTGGCCATCTAATATC 57.468 41.667 26.23 0.00 36.12 1.63
113 114 6.726299 TCTTGCTAGTACTGGCCATCTAATAT 59.274 38.462 26.23 0.00 36.12 1.28
114 115 6.075315 TCTTGCTAGTACTGGCCATCTAATA 58.925 40.000 26.23 4.23 36.12 0.98
115 116 4.901849 TCTTGCTAGTACTGGCCATCTAAT 59.098 41.667 26.23 0.22 36.12 1.73
116 117 4.286707 TCTTGCTAGTACTGGCCATCTAA 58.713 43.478 26.23 13.51 36.12 2.10
117 118 3.910989 TCTTGCTAGTACTGGCCATCTA 58.089 45.455 26.23 8.99 36.12 1.98
118 119 2.752030 TCTTGCTAGTACTGGCCATCT 58.248 47.619 26.23 8.22 36.12 2.90
119 120 3.760580 ATCTTGCTAGTACTGGCCATC 57.239 47.619 26.23 0.00 36.12 3.51
120 121 4.080356 TCAAATCTTGCTAGTACTGGCCAT 60.080 41.667 26.23 13.76 36.12 4.40
121 122 3.263170 TCAAATCTTGCTAGTACTGGCCA 59.737 43.478 26.23 16.00 36.12 5.36
122 123 3.873910 TCAAATCTTGCTAGTACTGGCC 58.126 45.455 26.23 10.63 36.12 5.36
123 124 5.118990 TGATCAAATCTTGCTAGTACTGGC 58.881 41.667 23.17 23.17 37.60 4.85
124 125 6.259608 CCTTGATCAAATCTTGCTAGTACTGG 59.740 42.308 9.88 3.15 0.00 4.00
125 126 6.238320 GCCTTGATCAAATCTTGCTAGTACTG 60.238 42.308 9.88 0.00 0.00 2.74
126 127 5.819901 GCCTTGATCAAATCTTGCTAGTACT 59.180 40.000 9.88 0.00 0.00 2.73
127 128 5.008118 GGCCTTGATCAAATCTTGCTAGTAC 59.992 44.000 9.88 0.00 0.00 2.73
128 129 5.126067 GGCCTTGATCAAATCTTGCTAGTA 58.874 41.667 9.88 0.00 0.00 1.82
129 130 3.950395 GGCCTTGATCAAATCTTGCTAGT 59.050 43.478 9.88 0.00 0.00 2.57
130 131 3.949754 TGGCCTTGATCAAATCTTGCTAG 59.050 43.478 9.88 0.00 0.00 3.42
131 132 3.966979 TGGCCTTGATCAAATCTTGCTA 58.033 40.909 9.88 3.04 0.00 3.49
132 133 2.811410 TGGCCTTGATCAAATCTTGCT 58.189 42.857 9.88 0.00 0.00 3.91
133 134 3.814005 ATGGCCTTGATCAAATCTTGC 57.186 42.857 9.88 7.21 0.00 4.01
134 135 7.067372 TGTTACTATGGCCTTGATCAAATCTTG 59.933 37.037 9.88 0.00 0.00 3.02
135 136 7.118723 TGTTACTATGGCCTTGATCAAATCTT 58.881 34.615 9.88 3.42 0.00 2.40
136 137 6.662755 TGTTACTATGGCCTTGATCAAATCT 58.337 36.000 9.88 0.00 0.00 2.40
137 138 6.543831 ACTGTTACTATGGCCTTGATCAAATC 59.456 38.462 9.88 3.97 0.00 2.17
138 139 6.319658 CACTGTTACTATGGCCTTGATCAAAT 59.680 38.462 9.88 2.65 0.00 2.32
139 140 5.647658 CACTGTTACTATGGCCTTGATCAAA 59.352 40.000 9.88 0.00 0.00 2.69
140 141 5.185454 CACTGTTACTATGGCCTTGATCAA 58.815 41.667 8.12 8.12 0.00 2.57
141 142 4.384098 CCACTGTTACTATGGCCTTGATCA 60.384 45.833 3.32 0.00 0.00 2.92
142 143 4.130118 CCACTGTTACTATGGCCTTGATC 58.870 47.826 3.32 0.00 0.00 2.92
143 144 3.117888 CCCACTGTTACTATGGCCTTGAT 60.118 47.826 3.32 0.00 31.66 2.57
144 145 2.238646 CCCACTGTTACTATGGCCTTGA 59.761 50.000 3.32 0.00 31.66 3.02
145 146 2.026262 ACCCACTGTTACTATGGCCTTG 60.026 50.000 3.32 0.00 31.66 3.61
146 147 2.275466 ACCCACTGTTACTATGGCCTT 58.725 47.619 3.32 0.00 31.66 4.35
147 148 1.966845 ACCCACTGTTACTATGGCCT 58.033 50.000 3.32 0.00 31.66 5.19
148 149 2.365582 CAACCCACTGTTACTATGGCC 58.634 52.381 0.00 0.00 34.69 5.36
149 150 1.743394 GCAACCCACTGTTACTATGGC 59.257 52.381 0.80 0.00 34.69 4.40
150 151 3.066291 TGCAACCCACTGTTACTATGG 57.934 47.619 0.00 0.00 34.69 2.74
151 152 5.643379 AAATGCAACCCACTGTTACTATG 57.357 39.130 0.00 0.00 34.69 2.23
152 153 7.954666 ATTAAATGCAACCCACTGTTACTAT 57.045 32.000 0.00 0.00 34.69 2.12
153 154 9.469097 AATATTAAATGCAACCCACTGTTACTA 57.531 29.630 0.00 0.00 34.69 1.82
154 155 7.954666 ATATTAAATGCAACCCACTGTTACT 57.045 32.000 0.00 0.00 34.69 2.24
155 156 8.868916 CAAATATTAAATGCAACCCACTGTTAC 58.131 33.333 0.00 0.00 34.69 2.50
156 157 8.807118 TCAAATATTAAATGCAACCCACTGTTA 58.193 29.630 0.00 0.00 34.69 2.41
157 158 7.675062 TCAAATATTAAATGCAACCCACTGTT 58.325 30.769 0.00 0.00 37.80 3.16
158 159 7.238486 TCAAATATTAAATGCAACCCACTGT 57.762 32.000 0.00 0.00 0.00 3.55
159 160 7.225145 CCATCAAATATTAAATGCAACCCACTG 59.775 37.037 0.00 0.00 0.00 3.66
160 161 7.274447 CCATCAAATATTAAATGCAACCCACT 58.726 34.615 0.00 0.00 0.00 4.00
161 162 6.482973 CCCATCAAATATTAAATGCAACCCAC 59.517 38.462 0.00 0.00 0.00 4.61
162 163 6.157645 ACCCATCAAATATTAAATGCAACCCA 59.842 34.615 0.00 0.00 0.00 4.51
163 164 6.482973 CACCCATCAAATATTAAATGCAACCC 59.517 38.462 0.00 0.00 0.00 4.11
164 165 6.482973 CCACCCATCAAATATTAAATGCAACC 59.517 38.462 0.00 0.00 0.00 3.77
165 166 6.482973 CCCACCCATCAAATATTAAATGCAAC 59.517 38.462 0.00 0.00 0.00 4.17
166 167 6.157645 ACCCACCCATCAAATATTAAATGCAA 59.842 34.615 0.00 0.00 0.00 4.08
167 168 5.664908 ACCCACCCATCAAATATTAAATGCA 59.335 36.000 0.00 0.00 0.00 3.96
168 169 6.173427 ACCCACCCATCAAATATTAAATGC 57.827 37.500 0.00 0.00 0.00 3.56
169 170 6.446318 CGACCCACCCATCAAATATTAAATG 58.554 40.000 0.00 0.00 0.00 2.32
170 171 5.538433 CCGACCCACCCATCAAATATTAAAT 59.462 40.000 0.00 0.00 0.00 1.40
171 172 4.890581 CCGACCCACCCATCAAATATTAAA 59.109 41.667 0.00 0.00 0.00 1.52
172 173 4.166337 TCCGACCCACCCATCAAATATTAA 59.834 41.667 0.00 0.00 0.00 1.40
173 174 3.717392 TCCGACCCACCCATCAAATATTA 59.283 43.478 0.00 0.00 0.00 0.98
174 175 2.512056 TCCGACCCACCCATCAAATATT 59.488 45.455 0.00 0.00 0.00 1.28
175 176 2.106511 CTCCGACCCACCCATCAAATAT 59.893 50.000 0.00 0.00 0.00 1.28
176 177 1.488812 CTCCGACCCACCCATCAAATA 59.511 52.381 0.00 0.00 0.00 1.40
177 178 0.255890 CTCCGACCCACCCATCAAAT 59.744 55.000 0.00 0.00 0.00 2.32
178 179 1.682849 CTCCGACCCACCCATCAAA 59.317 57.895 0.00 0.00 0.00 2.69
179 180 2.297895 CCTCCGACCCACCCATCAA 61.298 63.158 0.00 0.00 0.00 2.57
180 181 2.687200 CCTCCGACCCACCCATCA 60.687 66.667 0.00 0.00 0.00 3.07
181 182 2.687566 ACCTCCGACCCACCCATC 60.688 66.667 0.00 0.00 0.00 3.51
182 183 3.009115 CACCTCCGACCCACCCAT 61.009 66.667 0.00 0.00 0.00 4.00
187 188 4.974438 AAGGCCACCTCCGACCCA 62.974 66.667 5.01 0.00 30.89 4.51
188 189 3.647771 AAAGGCCACCTCCGACCC 61.648 66.667 5.01 0.00 30.89 4.46
189 190 1.833787 TACAAAGGCCACCTCCGACC 61.834 60.000 5.01 0.00 30.89 4.79
190 191 0.391263 CTACAAAGGCCACCTCCGAC 60.391 60.000 5.01 0.00 30.89 4.79
191 192 0.543410 TCTACAAAGGCCACCTCCGA 60.543 55.000 5.01 0.00 30.89 4.55
192 193 0.391263 GTCTACAAAGGCCACCTCCG 60.391 60.000 5.01 0.00 30.89 4.63
193 194 0.690762 TGTCTACAAAGGCCACCTCC 59.309 55.000 5.01 0.00 30.89 4.30
194 195 2.561478 TTGTCTACAAAGGCCACCTC 57.439 50.000 5.01 0.00 30.89 3.85
195 196 2.555227 CCATTGTCTACAAAGGCCACCT 60.555 50.000 5.01 0.00 37.80 4.00
196 197 1.818674 CCATTGTCTACAAAGGCCACC 59.181 52.381 5.01 0.00 37.80 4.61
197 198 1.818674 CCCATTGTCTACAAAGGCCAC 59.181 52.381 5.01 0.00 41.83 5.01
198 199 1.272425 CCCCATTGTCTACAAAGGCCA 60.272 52.381 5.01 0.00 41.83 5.36
199 200 1.272480 ACCCCATTGTCTACAAAGGCC 60.272 52.381 10.83 0.00 41.83 5.19
200 201 2.092323 GACCCCATTGTCTACAAAGGC 58.908 52.381 10.83 0.00 41.83 4.35
201 202 3.721087 AGACCCCATTGTCTACAAAGG 57.279 47.619 9.60 9.60 43.65 3.11
202 203 4.911390 AGAAGACCCCATTGTCTACAAAG 58.089 43.478 0.00 0.00 44.68 2.77
203 204 4.263331 GGAGAAGACCCCATTGTCTACAAA 60.263 45.833 0.00 0.00 44.68 2.83
204 205 3.263425 GGAGAAGACCCCATTGTCTACAA 59.737 47.826 0.00 0.00 44.68 2.41
205 206 2.838202 GGAGAAGACCCCATTGTCTACA 59.162 50.000 0.00 0.00 44.68 2.74
206 207 3.108376 AGGAGAAGACCCCATTGTCTAC 58.892 50.000 0.00 0.00 44.68 2.59
207 208 3.375699 GAGGAGAAGACCCCATTGTCTA 58.624 50.000 0.00 0.00 44.68 2.59
209 210 1.210722 GGAGGAGAAGACCCCATTGTC 59.789 57.143 0.00 0.00 35.43 3.18
210 211 1.290134 GGAGGAGAAGACCCCATTGT 58.710 55.000 0.00 0.00 0.00 2.71
211 212 0.179000 CGGAGGAGAAGACCCCATTG 59.821 60.000 0.00 0.00 0.00 2.82
212 213 1.627297 GCGGAGGAGAAGACCCCATT 61.627 60.000 0.00 0.00 0.00 3.16
213 214 2.066999 GCGGAGGAGAAGACCCCAT 61.067 63.158 0.00 0.00 0.00 4.00
214 215 2.683933 GCGGAGGAGAAGACCCCA 60.684 66.667 0.00 0.00 0.00 4.96
215 216 3.471806 GGCGGAGGAGAAGACCCC 61.472 72.222 0.00 0.00 0.00 4.95
216 217 1.627297 AATGGCGGAGGAGAAGACCC 61.627 60.000 0.00 0.00 0.00 4.46
217 218 0.462759 CAATGGCGGAGGAGAAGACC 60.463 60.000 0.00 0.00 0.00 3.85
218 219 0.462759 CCAATGGCGGAGGAGAAGAC 60.463 60.000 0.00 0.00 0.00 3.01
219 220 0.909610 ACCAATGGCGGAGGAGAAGA 60.910 55.000 0.00 0.00 0.00 2.87
220 221 0.462759 GACCAATGGCGGAGGAGAAG 60.463 60.000 0.00 0.00 0.00 2.85
221 222 1.198094 TGACCAATGGCGGAGGAGAA 61.198 55.000 0.00 0.00 0.00 2.87
222 223 1.612146 TGACCAATGGCGGAGGAGA 60.612 57.895 0.00 0.00 0.00 3.71
223 224 1.153289 CTGACCAATGGCGGAGGAG 60.153 63.158 0.00 0.00 0.00 3.69
224 225 2.669133 CCTGACCAATGGCGGAGGA 61.669 63.158 0.00 0.00 0.00 3.71
225 226 2.124570 CCTGACCAATGGCGGAGG 60.125 66.667 0.00 0.00 0.00 4.30
226 227 2.825836 GCCTGACCAATGGCGGAG 60.826 66.667 0.00 0.00 39.71 4.63
236 237 1.302832 CAGTTGTCCTGGCCTGACC 60.303 63.158 19.25 8.28 37.54 4.02
237 238 0.179018 AACAGTTGTCCTGGCCTGAC 60.179 55.000 11.88 14.54 46.06 3.51
238 239 0.179020 CAACAGTTGTCCTGGCCTGA 60.179 55.000 11.88 0.66 46.06 3.86
239 240 0.179020 TCAACAGTTGTCCTGGCCTG 60.179 55.000 13.14 2.54 46.06 4.85
240 241 0.773644 ATCAACAGTTGTCCTGGCCT 59.226 50.000 13.14 0.00 46.06 5.19
241 242 2.489938 TATCAACAGTTGTCCTGGCC 57.510 50.000 13.14 0.00 46.06 5.36
242 243 6.699575 ATAAATATCAACAGTTGTCCTGGC 57.300 37.500 13.14 0.00 46.06 4.85
243 244 8.786898 CCATATAAATATCAACAGTTGTCCTGG 58.213 37.037 13.14 5.26 46.06 4.45
245 246 8.723365 TCCCATATAAATATCAACAGTTGTCCT 58.277 33.333 13.14 2.64 0.00 3.85
246 247 8.918202 TCCCATATAAATATCAACAGTTGTCC 57.082 34.615 13.14 0.00 0.00 4.02
247 248 9.778741 TCTCCCATATAAATATCAACAGTTGTC 57.221 33.333 13.14 0.00 0.00 3.18
248 249 9.784531 CTCTCCCATATAAATATCAACAGTTGT 57.215 33.333 13.14 3.72 0.00 3.32
262 263 9.475620 ACAATCGTGTATATCTCTCCCATATAA 57.524 33.333 0.00 0.00 35.72 0.98
263 264 9.475620 AACAATCGTGTATATCTCTCCCATATA 57.524 33.333 0.00 0.00 36.80 0.86
264 265 7.962995 ACAATCGTGTATATCTCTCCCATAT 57.037 36.000 0.00 0.00 35.72 1.78
265 266 7.450323 TCAACAATCGTGTATATCTCTCCCATA 59.550 37.037 0.00 0.00 36.80 2.74
266 267 6.267699 TCAACAATCGTGTATATCTCTCCCAT 59.732 38.462 0.00 0.00 36.80 4.00
267 268 5.596772 TCAACAATCGTGTATATCTCTCCCA 59.403 40.000 0.00 0.00 36.80 4.37
268 269 6.085555 TCAACAATCGTGTATATCTCTCCC 57.914 41.667 0.00 0.00 36.80 4.30
269 270 7.867909 TGATTCAACAATCGTGTATATCTCTCC 59.132 37.037 0.00 0.00 41.41 3.71
270 271 8.803201 TGATTCAACAATCGTGTATATCTCTC 57.197 34.615 0.00 0.00 41.41 3.20
271 272 9.201127 CATGATTCAACAATCGTGTATATCTCT 57.799 33.333 8.25 0.00 45.51 3.10
281 282 5.487433 TGTACTCCATGATTCAACAATCGT 58.513 37.500 0.00 0.00 41.41 3.73
282 283 6.293081 GGATGTACTCCATGATTCAACAATCG 60.293 42.308 0.00 0.00 44.26 3.34
283 284 6.963796 GGATGTACTCCATGATTCAACAATC 58.036 40.000 0.00 0.00 44.26 2.67
284 285 6.949352 GGATGTACTCCATGATTCAACAAT 57.051 37.500 0.00 0.00 44.26 2.71
297 298 9.036980 ACCATTATATTAGTCAGGATGTACTCC 57.963 37.037 0.00 0.00 45.33 3.85
302 303 9.159254 TCTCAACCATTATATTAGTCAGGATGT 57.841 33.333 0.00 0.00 37.40 3.06
317 318 9.904198 TCATTTACATCAGAATCTCAACCATTA 57.096 29.630 0.00 0.00 0.00 1.90
318 319 8.812513 TCATTTACATCAGAATCTCAACCATT 57.187 30.769 0.00 0.00 0.00 3.16
319 320 8.051535 ACTCATTTACATCAGAATCTCAACCAT 58.948 33.333 0.00 0.00 0.00 3.55
320 321 7.397221 ACTCATTTACATCAGAATCTCAACCA 58.603 34.615 0.00 0.00 0.00 3.67
321 322 7.856145 ACTCATTTACATCAGAATCTCAACC 57.144 36.000 0.00 0.00 0.00 3.77
322 323 9.809096 TCTACTCATTTACATCAGAATCTCAAC 57.191 33.333 0.00 0.00 0.00 3.18
336 337 9.474920 CCATCAGAATCTCTTCTACTCATTTAC 57.525 37.037 0.00 0.00 39.78 2.01
337 338 8.646004 CCCATCAGAATCTCTTCTACTCATTTA 58.354 37.037 0.00 0.00 39.78 1.40
338 339 7.507829 CCCATCAGAATCTCTTCTACTCATTT 58.492 38.462 0.00 0.00 39.78 2.32
339 340 6.464180 GCCCATCAGAATCTCTTCTACTCATT 60.464 42.308 0.00 0.00 39.78 2.57
340 341 5.011943 GCCCATCAGAATCTCTTCTACTCAT 59.988 44.000 0.00 0.00 39.78 2.90
341 342 4.343526 GCCCATCAGAATCTCTTCTACTCA 59.656 45.833 0.00 0.00 39.78 3.41
342 343 4.343526 TGCCCATCAGAATCTCTTCTACTC 59.656 45.833 0.00 0.00 39.78 2.59
343 344 4.293494 TGCCCATCAGAATCTCTTCTACT 58.707 43.478 0.00 0.00 39.78 2.57
344 345 4.630111 CTGCCCATCAGAATCTCTTCTAC 58.370 47.826 0.00 0.00 45.72 2.59
345 346 3.070734 GCTGCCCATCAGAATCTCTTCTA 59.929 47.826 0.00 0.00 45.72 2.10
346 347 2.158784 GCTGCCCATCAGAATCTCTTCT 60.159 50.000 0.00 0.00 45.72 2.85
347 348 2.220313 GCTGCCCATCAGAATCTCTTC 58.780 52.381 0.00 0.00 45.72 2.87
348 349 1.474677 CGCTGCCCATCAGAATCTCTT 60.475 52.381 0.00 0.00 45.72 2.85
349 350 0.106335 CGCTGCCCATCAGAATCTCT 59.894 55.000 0.00 0.00 45.72 3.10
350 351 0.179062 ACGCTGCCCATCAGAATCTC 60.179 55.000 0.00 0.00 45.72 2.75
351 352 0.179062 GACGCTGCCCATCAGAATCT 60.179 55.000 0.00 0.00 45.72 2.40
352 353 1.493950 CGACGCTGCCCATCAGAATC 61.494 60.000 0.00 0.00 45.72 2.52
353 354 1.522355 CGACGCTGCCCATCAGAAT 60.522 57.895 0.00 0.00 45.72 2.40
354 355 2.125552 CGACGCTGCCCATCAGAA 60.126 61.111 0.00 0.00 45.72 3.02
355 356 3.356639 GACGACGCTGCCCATCAGA 62.357 63.158 0.00 0.00 45.72 3.27
356 357 2.887568 GACGACGCTGCCCATCAG 60.888 66.667 0.00 0.00 45.62 2.90
357 358 4.794439 CGACGACGCTGCCCATCA 62.794 66.667 0.00 0.00 0.00 3.07
358 359 4.492160 TCGACGACGCTGCCCATC 62.492 66.667 1.48 0.00 39.58 3.51
359 360 4.498520 CTCGACGACGCTGCCCAT 62.499 66.667 1.48 0.00 39.58 4.00
361 362 3.807538 TACTCGACGACGCTGCCC 61.808 66.667 1.48 0.00 39.58 5.36
362 363 2.576317 GTACTCGACGACGCTGCC 60.576 66.667 1.48 0.00 39.58 4.85
363 364 1.580639 GAGTACTCGACGACGCTGC 60.581 63.158 7.22 0.00 39.58 5.25
364 365 1.060622 GGAGTACTCGACGACGCTG 59.939 63.158 16.56 0.57 39.58 5.18
365 366 0.952497 TTGGAGTACTCGACGACGCT 60.952 55.000 16.56 0.00 39.58 5.07
366 367 0.098376 ATTGGAGTACTCGACGACGC 59.902 55.000 16.56 1.67 39.58 5.19
367 368 1.811428 CATTGGAGTACTCGACGACG 58.189 55.000 16.56 0.00 41.26 5.12
368 369 1.135489 TGCATTGGAGTACTCGACGAC 60.135 52.381 16.56 6.81 0.00 4.34
369 370 1.170442 TGCATTGGAGTACTCGACGA 58.830 50.000 16.56 4.29 0.00 4.20
370 371 1.990799 TTGCATTGGAGTACTCGACG 58.009 50.000 16.56 7.81 0.00 5.12
371 372 4.492570 CGAAATTGCATTGGAGTACTCGAC 60.493 45.833 16.56 4.56 0.00 4.20
372 373 3.616821 CGAAATTGCATTGGAGTACTCGA 59.383 43.478 16.56 10.30 0.00 4.04
373 374 3.242413 CCGAAATTGCATTGGAGTACTCG 60.242 47.826 16.56 4.06 0.00 4.18
374 375 3.938963 TCCGAAATTGCATTGGAGTACTC 59.061 43.478 14.87 14.87 0.00 2.59
375 376 3.950397 TCCGAAATTGCATTGGAGTACT 58.050 40.909 0.00 0.00 0.00 2.73
376 377 4.156008 AGTTCCGAAATTGCATTGGAGTAC 59.844 41.667 0.00 0.00 0.00 2.73
377 378 4.331968 AGTTCCGAAATTGCATTGGAGTA 58.668 39.130 0.00 0.00 0.00 2.59
378 379 3.157087 AGTTCCGAAATTGCATTGGAGT 58.843 40.909 0.00 0.00 0.00 3.85
379 380 3.855689 AGTTCCGAAATTGCATTGGAG 57.144 42.857 0.00 0.00 0.00 3.86
380 381 7.581213 ATTATAGTTCCGAAATTGCATTGGA 57.419 32.000 0.00 0.00 0.00 3.53
381 382 7.382218 GGAATTATAGTTCCGAAATTGCATTGG 59.618 37.037 10.90 0.00 38.41 3.16
382 383 7.382218 GGGAATTATAGTTCCGAAATTGCATTG 59.618 37.037 17.95 0.00 46.97 2.82
383 384 7.287696 AGGGAATTATAGTTCCGAAATTGCATT 59.712 33.333 17.95 0.00 46.97 3.56
384 385 6.777580 AGGGAATTATAGTTCCGAAATTGCAT 59.222 34.615 17.95 0.00 46.97 3.96
385 386 6.126409 AGGGAATTATAGTTCCGAAATTGCA 58.874 36.000 17.95 0.00 46.97 4.08
386 387 6.635030 AGGGAATTATAGTTCCGAAATTGC 57.365 37.500 17.95 5.34 46.97 3.56
387 388 8.904099 ACTAGGGAATTATAGTTCCGAAATTG 57.096 34.615 17.95 9.28 46.97 2.32
390 391 9.370930 TGATACTAGGGAATTATAGTTCCGAAA 57.629 33.333 17.95 7.41 46.97 3.46
391 392 8.945195 TGATACTAGGGAATTATAGTTCCGAA 57.055 34.615 17.95 9.44 46.97 4.30
407 408 2.555325 TCGTGCCCGTTATGATACTAGG 59.445 50.000 0.00 0.00 35.01 3.02
417 418 2.279985 TTTGCGTCGTGCCCGTTA 60.280 55.556 0.00 0.00 45.60 3.18
426 427 0.802494 ACCAATAAGGCTTTGCGTCG 59.198 50.000 4.45 0.00 43.14 5.12
430 431 0.897621 AGGCACCAATAAGGCTTTGC 59.102 50.000 4.45 8.81 43.14 3.68
447 448 2.260869 CCAAACAGGTGCGGTGAGG 61.261 63.158 0.00 0.00 0.00 3.86
450 451 3.198236 CTGCCAAACAGGTGCGGTG 62.198 63.158 0.00 0.00 43.19 4.94
508 509 8.668353 CATTTCCTATGTCGATTCTCTCAAAAA 58.332 33.333 0.00 0.00 0.00 1.94
514 515 5.543507 AGCATTTCCTATGTCGATTCTCT 57.456 39.130 0.00 0.00 0.00 3.10
559 593 4.551702 AAAAGCAACCCACTGAAGTTTT 57.448 36.364 0.00 0.00 0.00 2.43
560 594 5.660460 CTTAAAAGCAACCCACTGAAGTTT 58.340 37.500 0.00 0.00 0.00 2.66
576 611 3.679502 CGGAAATGGCAAAGGCTTAAAAG 59.320 43.478 0.00 0.00 40.87 2.27
612 648 9.661563 ACAAAAATATCACGGTCTAAGTAATCA 57.338 29.630 0.00 0.00 0.00 2.57
617 653 8.836268 TTGTACAAAAATATCACGGTCTAAGT 57.164 30.769 5.64 0.00 0.00 2.24
637 673 7.138736 AGAAATATGCAATGCCGTATTTGTAC 58.861 34.615 21.86 12.60 32.58 2.90
638 674 7.270757 AGAAATATGCAATGCCGTATTTGTA 57.729 32.000 21.86 0.00 32.58 2.41
639 675 6.147864 AGAAATATGCAATGCCGTATTTGT 57.852 33.333 21.86 17.53 32.58 2.83
640 676 7.467557 AAAGAAATATGCAATGCCGTATTTG 57.532 32.000 21.86 0.00 32.58 2.32
641 677 6.417635 CGAAAGAAATATGCAATGCCGTATTT 59.582 34.615 18.88 18.88 33.95 1.40
644 680 4.572795 TCGAAAGAAATATGCAATGCCGTA 59.427 37.500 1.53 0.00 37.03 4.02
645 681 3.376859 TCGAAAGAAATATGCAATGCCGT 59.623 39.130 1.53 0.00 37.03 5.68
646 682 3.725740 GTCGAAAGAAATATGCAATGCCG 59.274 43.478 1.53 0.00 45.01 5.69
647 683 4.044426 GGTCGAAAGAAATATGCAATGCC 58.956 43.478 1.53 0.00 45.01 4.40
648 684 3.725740 CGGTCGAAAGAAATATGCAATGC 59.274 43.478 0.00 0.00 45.01 3.56
714 756 2.332063 ACCGCTACCAGATTCCAATG 57.668 50.000 0.00 0.00 0.00 2.82
722 764 0.036105 TCGTGTCTACCGCTACCAGA 60.036 55.000 0.00 0.00 0.00 3.86
729 771 2.099831 CCTCGTCGTGTCTACCGC 59.900 66.667 0.00 0.00 0.00 5.68
739 781 1.533469 AAGTTCCACCTCCCTCGTCG 61.533 60.000 0.00 0.00 0.00 5.12
751 793 0.473117 AACGGGGGAGAGAAGTTCCA 60.473 55.000 0.00 0.00 36.40 3.53
752 794 0.249676 GAACGGGGGAGAGAAGTTCC 59.750 60.000 0.00 0.00 36.23 3.62
754 796 1.199425 GGGAACGGGGGAGAGAAGTT 61.199 60.000 0.00 0.00 0.00 2.66
755 797 1.612739 GGGAACGGGGGAGAGAAGT 60.613 63.158 0.00 0.00 0.00 3.01
757 799 2.285144 GGGGAACGGGGGAGAGAA 60.285 66.667 0.00 0.00 0.00 2.87
758 800 4.410033 GGGGGAACGGGGGAGAGA 62.410 72.222 0.00 0.00 0.00 3.10
763 805 2.039788 TAGGATAGGGGGAACGGGGG 62.040 65.000 0.00 0.00 0.00 5.40
765 807 1.569653 GATAGGATAGGGGGAACGGG 58.430 60.000 0.00 0.00 0.00 5.28
766 808 1.569653 GGATAGGATAGGGGGAACGG 58.430 60.000 0.00 0.00 0.00 4.44
767 809 1.569653 GGGATAGGATAGGGGGAACG 58.430 60.000 0.00 0.00 0.00 3.95
768 810 1.441553 AGGGGATAGGATAGGGGGAAC 59.558 57.143 0.00 0.00 0.00 3.62
810 874 2.109181 GGGCGGAGGAGGAATTCG 59.891 66.667 0.00 0.00 0.00 3.34
893 957 6.515696 GCAAGAGAGGTAAATTGCTCTTTGTT 60.516 38.462 0.00 0.00 43.15 2.83
907 972 0.175760 GATGGTGCGCAAGAGAGGTA 59.824 55.000 14.00 0.00 43.02 3.08
908 973 1.078848 GATGGTGCGCAAGAGAGGT 60.079 57.895 14.00 0.00 43.02 3.85
985 1050 4.431416 AGGCCATTACGGAAATATCACA 57.569 40.909 5.01 0.00 36.56 3.58
1141 1206 4.069232 CTGCTGGTCGGAGGCGAA 62.069 66.667 0.00 0.00 0.00 4.70
1440 1505 0.110238 CCTGAACGCCAAACATGTCG 60.110 55.000 0.00 0.11 0.00 4.35
1453 1518 2.358737 CAGTGCGTCCCCCTGAAC 60.359 66.667 0.00 0.00 0.00 3.18
1461 1526 4.250305 ACCACCACCAGTGCGTCC 62.250 66.667 0.00 0.00 45.83 4.79
1468 1533 2.426522 CTGATTGTACACCACCACCAG 58.573 52.381 0.00 0.00 0.00 4.00
1478 1543 3.762288 AGTACGGAGAAGCTGATTGTACA 59.238 43.478 14.84 0.00 34.62 2.90
1488 1553 3.004944 CCTCCATAAGAGTACGGAGAAGC 59.995 52.174 12.33 0.00 46.71 3.86
1498 1563 4.901785 TCTTACTCCCCTCCATAAGAGT 57.098 45.455 0.00 0.00 41.47 3.24
1499 1564 5.398236 TGATCTTACTCCCCTCCATAAGAG 58.602 45.833 0.00 0.00 42.83 2.85
1503 1568 3.904339 GCTTGATCTTACTCCCCTCCATA 59.096 47.826 0.00 0.00 0.00 2.74
1580 1645 6.025280 GCATTAATAACCGTGTTGTAAGTGG 58.975 40.000 0.00 0.00 0.00 4.00
1593 1658 4.092383 ACTCGACACAACGCATTAATAACC 59.908 41.667 0.00 0.00 0.00 2.85
1596 1661 4.924462 TGAACTCGACACAACGCATTAATA 59.076 37.500 0.00 0.00 0.00 0.98
1599 1664 2.745102 TGAACTCGACACAACGCATTA 58.255 42.857 0.00 0.00 0.00 1.90
1728 1793 0.975556 TCCTCAGTGCCGCCTCAATA 60.976 55.000 0.00 0.00 0.00 1.90
1731 1796 2.685017 ATCCTCAGTGCCGCCTCA 60.685 61.111 0.00 0.00 0.00 3.86
1755 1820 2.746142 GCATCCCATTTCTGACATCCGA 60.746 50.000 0.00 0.00 0.00 4.55
1845 1910 5.330455 TCTCTTGCTGTACATAACTGAGG 57.670 43.478 0.00 0.00 0.00 3.86
1904 1969 4.475944 GCACAGACCATGAACAAATGTAC 58.524 43.478 0.00 0.00 0.00 2.90
1915 1980 1.066716 CCCATTTTGGCACAGACCATG 60.067 52.381 0.00 0.00 42.39 3.66
2049 2114 2.890808 TTATGACTGCCTTAGCCTCG 57.109 50.000 0.00 0.00 38.69 4.63
2086 2151 1.944709 GGTAACGTCAGGCAAACAACT 59.055 47.619 0.00 0.00 0.00 3.16
2175 2240 1.821753 AGTCCCTTCACTGTCAGATCG 59.178 52.381 6.91 0.00 0.00 3.69
2184 2249 2.704190 TTGGAGAGAGTCCCTTCACT 57.296 50.000 0.00 0.00 46.31 3.41
2241 2306 4.141620 GCAAGATGAGGATCTCCAACCTTA 60.142 45.833 0.00 0.00 38.03 2.69
2439 2504 5.066375 TCTCAATTTCTTGCATAACCCATCG 59.934 40.000 0.00 0.00 32.11 3.84
2580 2645 9.844790 CTTATCATTTGTTCAATAAGTTCTGCA 57.155 29.630 0.00 0.00 30.54 4.41
3375 3445 4.467438 TCTTCTACATGCTGAGTTCATCCA 59.533 41.667 0.00 0.00 0.00 3.41
3491 3561 3.996150 AGGCGGCAAAATAATCTGATG 57.004 42.857 13.08 0.00 0.00 3.07
3492 3562 5.105392 TGAAAAGGCGGCAAAATAATCTGAT 60.105 36.000 13.08 0.00 0.00 2.90
3629 3699 2.359900 GTTCATGGAAAGAGATGCGGT 58.640 47.619 0.00 0.00 0.00 5.68
3656 3726 2.033194 GCCTACGTGCCAGTGTTCC 61.033 63.158 0.00 0.00 0.00 3.62
3667 3737 2.810650 CTAAATCTGAAGCGCCTACGT 58.189 47.619 2.29 0.00 42.83 3.57
3696 3766 9.663904 CATAAAATCATCTTTGGTAATGGTACG 57.336 33.333 0.00 0.00 0.00 3.67
3738 3808 4.837860 TCAACCTGGCATCTTAAATTGGTT 59.162 37.500 0.00 0.00 37.06 3.67
3756 3826 2.878406 ACATGTACAACACTGCTCAACC 59.122 45.455 0.00 0.00 0.00 3.77
3943 4013 2.011046 GCCATTCTGAGTCAGTGAGCC 61.011 57.143 19.53 3.95 32.61 4.70
3957 4027 4.640201 TGCAGTATTCCTTTACAGCCATTC 59.360 41.667 0.00 0.00 34.68 2.67
3958 4028 4.599041 TGCAGTATTCCTTTACAGCCATT 58.401 39.130 0.00 0.00 34.68 3.16
4001 4073 4.952071 TGTCAAATTTGCCCTCATTCAA 57.048 36.364 13.54 0.00 0.00 2.69
4010 4082 6.200808 CAAGGTCAAAATTGTCAAATTTGCC 58.799 36.000 17.69 19.32 43.63 4.52
4011 4083 6.200808 CCAAGGTCAAAATTGTCAAATTTGC 58.799 36.000 17.69 13.41 43.63 3.68
4012 4084 6.541641 TCCCAAGGTCAAAATTGTCAAATTTG 59.458 34.615 16.75 16.75 43.63 2.32
4013 4085 6.542005 GTCCCAAGGTCAAAATTGTCAAATTT 59.458 34.615 0.00 0.00 45.81 1.82
4014 4086 6.054941 GTCCCAAGGTCAAAATTGTCAAATT 58.945 36.000 0.00 0.00 37.61 1.82
4015 4087 5.610398 GTCCCAAGGTCAAAATTGTCAAAT 58.390 37.500 0.00 0.00 0.00 2.32
4016 4088 4.440802 CGTCCCAAGGTCAAAATTGTCAAA 60.441 41.667 0.00 0.00 0.00 2.69
4017 4089 3.067461 CGTCCCAAGGTCAAAATTGTCAA 59.933 43.478 0.00 0.00 0.00 3.18
4018 4090 2.621055 CGTCCCAAGGTCAAAATTGTCA 59.379 45.455 0.00 0.00 0.00 3.58
4019 4091 2.882137 TCGTCCCAAGGTCAAAATTGTC 59.118 45.455 0.00 0.00 0.00 3.18
4020 4092 2.938838 TCGTCCCAAGGTCAAAATTGT 58.061 42.857 0.00 0.00 0.00 2.71
4021 4093 4.314740 TTTCGTCCCAAGGTCAAAATTG 57.685 40.909 0.00 0.00 0.00 2.32
4022 4094 4.586841 TGATTTCGTCCCAAGGTCAAAATT 59.413 37.500 0.00 0.00 0.00 1.82
4023 4095 4.148838 TGATTTCGTCCCAAGGTCAAAAT 58.851 39.130 0.00 0.00 0.00 1.82
4024 4096 3.556999 TGATTTCGTCCCAAGGTCAAAA 58.443 40.909 0.00 0.00 0.00 2.44
4025 4097 3.216187 TGATTTCGTCCCAAGGTCAAA 57.784 42.857 0.00 0.00 0.00 2.69
4026 4098 2.940994 TGATTTCGTCCCAAGGTCAA 57.059 45.000 0.00 0.00 0.00 3.18
4027 4099 2.940994 TTGATTTCGTCCCAAGGTCA 57.059 45.000 0.00 0.00 0.00 4.02
4028 4100 3.756434 TGATTTGATTTCGTCCCAAGGTC 59.244 43.478 0.00 0.00 0.00 3.85
4029 4101 3.506067 GTGATTTGATTTCGTCCCAAGGT 59.494 43.478 0.00 0.00 0.00 3.50
4030 4102 3.505680 TGTGATTTGATTTCGTCCCAAGG 59.494 43.478 0.00 0.00 0.00 3.61
4031 4103 4.455533 TCTGTGATTTGATTTCGTCCCAAG 59.544 41.667 0.00 0.00 0.00 3.61
4032 4104 4.393834 TCTGTGATTTGATTTCGTCCCAA 58.606 39.130 0.00 0.00 0.00 4.12
4033 4105 4.014569 TCTGTGATTTGATTTCGTCCCA 57.985 40.909 0.00 0.00 0.00 4.37
4034 4106 5.123820 TCATTCTGTGATTTGATTTCGTCCC 59.876 40.000 0.00 0.00 0.00 4.46
4035 4107 6.182039 TCATTCTGTGATTTGATTTCGTCC 57.818 37.500 0.00 0.00 0.00 4.79
4036 4108 7.301054 AGTTCATTCTGTGATTTGATTTCGTC 58.699 34.615 0.00 0.00 36.54 4.20
4037 4109 7.206981 AGTTCATTCTGTGATTTGATTTCGT 57.793 32.000 0.00 0.00 36.54 3.85
4038 4110 7.693951 GGTAGTTCATTCTGTGATTTGATTTCG 59.306 37.037 0.00 0.00 36.54 3.46
4039 4111 7.970614 GGGTAGTTCATTCTGTGATTTGATTTC 59.029 37.037 0.00 0.00 36.54 2.17
4040 4112 7.362056 CGGGTAGTTCATTCTGTGATTTGATTT 60.362 37.037 0.00 0.00 36.54 2.17
4041 4113 6.094048 CGGGTAGTTCATTCTGTGATTTGATT 59.906 38.462 0.00 0.00 36.54 2.57
4042 4114 5.586243 CGGGTAGTTCATTCTGTGATTTGAT 59.414 40.000 0.00 0.00 36.54 2.57
4043 4115 4.935205 CGGGTAGTTCATTCTGTGATTTGA 59.065 41.667 0.00 0.00 36.54 2.69
4044 4116 4.695455 ACGGGTAGTTCATTCTGTGATTTG 59.305 41.667 0.00 0.00 36.54 2.32
4045 4117 4.695455 CACGGGTAGTTCATTCTGTGATTT 59.305 41.667 0.00 0.00 38.40 2.17
4046 4118 4.020573 TCACGGGTAGTTCATTCTGTGATT 60.021 41.667 0.00 0.00 39.65 2.57
4047 4119 3.513912 TCACGGGTAGTTCATTCTGTGAT 59.486 43.478 0.00 0.00 39.65 3.06
4048 4120 2.894765 TCACGGGTAGTTCATTCTGTGA 59.105 45.455 0.00 0.00 41.49 3.58
4049 4121 3.313012 TCACGGGTAGTTCATTCTGTG 57.687 47.619 0.00 0.00 37.72 3.66
4050 4122 4.062991 GTTTCACGGGTAGTTCATTCTGT 58.937 43.478 0.00 0.00 0.00 3.41
4051 4123 4.315803 AGTTTCACGGGTAGTTCATTCTG 58.684 43.478 0.00 0.00 0.00 3.02
4052 4124 4.618920 AGTTTCACGGGTAGTTCATTCT 57.381 40.909 0.00 0.00 0.00 2.40
4053 4125 6.980051 AATAGTTTCACGGGTAGTTCATTC 57.020 37.500 0.00 0.00 0.00 2.67
4054 4126 6.938030 TGAAATAGTTTCACGGGTAGTTCATT 59.062 34.615 1.24 0.00 44.21 2.57
4055 4127 6.469410 TGAAATAGTTTCACGGGTAGTTCAT 58.531 36.000 1.24 0.00 44.21 2.57
4056 4128 5.856156 TGAAATAGTTTCACGGGTAGTTCA 58.144 37.500 1.24 0.00 44.21 3.18
4067 4139 3.591023 TCATCGGCGTGAAATAGTTTCA 58.409 40.909 6.85 1.24 46.68 2.69
4068 4140 4.508124 AGATCATCGGCGTGAAATAGTTTC 59.492 41.667 6.85 3.28 40.08 2.78
4069 4141 4.442706 AGATCATCGGCGTGAAATAGTTT 58.557 39.130 6.85 0.00 0.00 2.66
4070 4142 4.060038 AGATCATCGGCGTGAAATAGTT 57.940 40.909 6.85 0.00 0.00 2.24
4071 4143 3.735237 AGATCATCGGCGTGAAATAGT 57.265 42.857 6.85 0.00 0.00 2.12
4072 4144 5.409643 AAAAGATCATCGGCGTGAAATAG 57.590 39.130 6.85 0.00 0.00 1.73
4073 4145 5.123186 ACAAAAAGATCATCGGCGTGAAATA 59.877 36.000 6.85 0.00 0.00 1.40
4074 4146 4.082787 ACAAAAAGATCATCGGCGTGAAAT 60.083 37.500 6.85 0.85 0.00 2.17
4075 4147 3.252215 ACAAAAAGATCATCGGCGTGAAA 59.748 39.130 6.85 0.00 0.00 2.69
4076 4148 2.811431 ACAAAAAGATCATCGGCGTGAA 59.189 40.909 6.85 0.00 0.00 3.18
4077 4149 2.159430 CACAAAAAGATCATCGGCGTGA 59.841 45.455 6.85 10.70 0.00 4.35
4078 4150 2.095768 ACACAAAAAGATCATCGGCGTG 60.096 45.455 6.85 4.88 0.00 5.34
4079 4151 2.151202 ACACAAAAAGATCATCGGCGT 58.849 42.857 6.85 0.00 0.00 5.68
4080 4152 2.900122 ACACAAAAAGATCATCGGCG 57.100 45.000 0.00 0.00 0.00 6.46
4081 4153 3.685058 GCTACACAAAAAGATCATCGGC 58.315 45.455 0.00 0.00 0.00 5.54
4082 4154 3.785505 GCGCTACACAAAAAGATCATCGG 60.786 47.826 0.00 0.00 0.00 4.18
4083 4155 3.345714 GCGCTACACAAAAAGATCATCG 58.654 45.455 0.00 0.00 0.00 3.84
4084 4156 3.487544 GGGCGCTACACAAAAAGATCATC 60.488 47.826 7.64 0.00 0.00 2.92
4085 4157 2.423538 GGGCGCTACACAAAAAGATCAT 59.576 45.455 7.64 0.00 0.00 2.45
4086 4158 1.810151 GGGCGCTACACAAAAAGATCA 59.190 47.619 7.64 0.00 0.00 2.92
4087 4159 1.202031 CGGGCGCTACACAAAAAGATC 60.202 52.381 7.64 0.00 0.00 2.75
4088 4160 0.802494 CGGGCGCTACACAAAAAGAT 59.198 50.000 7.64 0.00 0.00 2.40
4089 4161 1.847890 GCGGGCGCTACACAAAAAGA 61.848 55.000 7.64 0.00 38.26 2.52
4090 4162 1.442017 GCGGGCGCTACACAAAAAG 60.442 57.895 7.64 0.00 38.26 2.27
4091 4163 2.640421 GCGGGCGCTACACAAAAA 59.360 55.556 7.64 0.00 38.26 1.94
4092 4164 3.358707 GGCGGGCGCTACACAAAA 61.359 61.111 7.64 0.00 41.60 2.44
4093 4165 4.627801 TGGCGGGCGCTACACAAA 62.628 61.111 7.64 0.00 41.60 2.83
4126 4198 2.278857 CTAGGCGCTGCACCGTAG 60.279 66.667 7.64 2.34 0.00 3.51
4127 4199 4.508128 GCTAGGCGCTGCACCGTA 62.508 66.667 7.64 0.00 35.14 4.02
4140 4212 4.408821 TGCAACGCCCCCAGCTAG 62.409 66.667 0.00 0.00 40.39 3.42
4141 4213 4.715523 GTGCAACGCCCCCAGCTA 62.716 66.667 0.00 0.00 40.39 3.32
4144 4216 3.443045 GATGTGCAACGCCCCCAG 61.443 66.667 0.00 0.00 42.39 4.45
4145 4217 3.965258 AGATGTGCAACGCCCCCA 61.965 61.111 0.00 0.00 42.39 4.96
4146 4218 3.443045 CAGATGTGCAACGCCCCC 61.443 66.667 0.00 0.00 42.39 5.40
4147 4219 2.672996 ACAGATGTGCAACGCCCC 60.673 61.111 0.00 0.00 42.39 5.80
4148 4220 2.690778 GGACAGATGTGCAACGCCC 61.691 63.158 0.00 0.00 42.39 6.13
4149 4221 1.965930 TGGACAGATGTGCAACGCC 60.966 57.895 4.56 0.00 43.38 5.68
4150 4222 3.654201 TGGACAGATGTGCAACGC 58.346 55.556 4.56 0.00 43.38 4.84
4154 4226 1.301637 CACGGTGGACAGATGTGCA 60.302 57.895 2.77 2.77 44.12 4.57
4155 4227 2.034879 CCACGGTGGACAGATGTGC 61.035 63.158 22.77 0.00 40.96 4.57
4156 4228 2.034879 GCCACGGTGGACAGATGTG 61.035 63.158 30.65 1.03 40.96 3.21
4157 4229 2.347490 GCCACGGTGGACAGATGT 59.653 61.111 30.65 0.00 40.96 3.06
4158 4230 1.742880 CTGCCACGGTGGACAGATG 60.743 63.158 30.87 15.64 40.96 2.90
4159 4231 2.665000 CTGCCACGGTGGACAGAT 59.335 61.111 30.87 0.00 40.96 2.90
4160 4232 4.314440 GCTGCCACGGTGGACAGA 62.314 66.667 35.00 17.24 40.96 3.41
4201 4273 4.880537 CCTAGCACGGAGGCGCTG 62.881 72.222 7.64 0.00 40.54 5.18
4214 4286 2.747446 ACTTTAAATGTGTGGCGCCTAG 59.253 45.455 29.70 10.79 0.00 3.02
4215 4287 2.486203 CACTTTAAATGTGTGGCGCCTA 59.514 45.455 29.70 14.39 0.00 3.93
4216 4288 1.269448 CACTTTAAATGTGTGGCGCCT 59.731 47.619 29.70 7.80 0.00 5.52
4217 4289 1.696988 CACTTTAAATGTGTGGCGCC 58.303 50.000 22.73 22.73 0.00 6.53
4218 4290 1.059942 GCACTTTAAATGTGTGGCGC 58.940 50.000 0.00 0.00 37.70 6.53
4219 4291 2.318578 CTGCACTTTAAATGTGTGGCG 58.681 47.619 14.90 0.00 37.70 5.69
4220 4292 2.061028 GCTGCACTTTAAATGTGTGGC 58.939 47.619 14.90 14.49 37.70 5.01
4221 4293 3.052036 GTGCTGCACTTTAAATGTGTGG 58.948 45.455 24.68 10.75 37.70 4.17
4222 4294 3.052036 GGTGCTGCACTTTAAATGTGTG 58.948 45.455 29.54 9.54 37.70 3.82
4223 4295 2.958355 AGGTGCTGCACTTTAAATGTGT 59.042 40.909 29.54 2.20 37.70 3.72
4224 4296 3.311106 CAGGTGCTGCACTTTAAATGTG 58.689 45.455 29.54 7.19 38.36 3.21
4225 4297 2.297033 CCAGGTGCTGCACTTTAAATGT 59.703 45.455 29.54 4.56 34.40 2.71
4226 4298 2.927871 GCCAGGTGCTGCACTTTAAATG 60.928 50.000 29.54 17.97 36.87 2.32
4227 4299 1.273327 GCCAGGTGCTGCACTTTAAAT 59.727 47.619 29.54 8.65 36.87 1.40
4228 4300 0.673437 GCCAGGTGCTGCACTTTAAA 59.327 50.000 29.54 0.00 36.87 1.52
4229 4301 0.467106 TGCCAGGTGCTGCACTTTAA 60.467 50.000 29.54 9.43 42.00 1.52
4230 4302 1.150308 TGCCAGGTGCTGCACTTTA 59.850 52.632 29.54 10.41 42.00 1.85
4231 4303 2.123769 TGCCAGGTGCTGCACTTT 60.124 55.556 29.54 16.91 42.00 2.66
4232 4304 2.908940 GTGCCAGGTGCTGCACTT 60.909 61.111 29.54 21.66 42.00 3.16
4233 4305 3.839353 GAGTGCCAGGTGCTGCACT 62.839 63.158 29.54 16.18 44.63 4.40
4234 4306 3.360340 GAGTGCCAGGTGCTGCAC 61.360 66.667 24.02 24.02 42.00 4.57
4235 4307 4.994471 CGAGTGCCAGGTGCTGCA 62.994 66.667 0.00 0.00 42.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.