Multiple sequence alignment - TraesCS5B01G380900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G380900 chr5B 100.000 2690 0 0 1 2690 558688323 558685634 0.000000e+00 4968.0
1 TraesCS5B01G380900 chr5B 93.386 378 23 2 2191 2567 684083930 684084306 2.340000e-155 558.0
2 TraesCS5B01G380900 chr5B 91.935 62 2 3 93 152 406537922 406537982 1.720000e-12 84.2
3 TraesCS5B01G380900 chr5D 96.071 2036 51 11 152 2173 456752904 456750884 0.000000e+00 3290.0
4 TraesCS5B01G380900 chr5D 75.328 458 104 8 831 1282 495030724 495031178 7.550000e-51 211.0
5 TraesCS5B01G380900 chr5D 92.308 117 8 1 27 143 456753092 456752977 5.960000e-37 165.0
6 TraesCS5B01G380900 chr5D 83.951 81 6 1 2569 2649 456750863 456750790 1.340000e-08 71.3
7 TraesCS5B01G380900 chr5D 100.000 35 0 0 1 35 456754022 456753988 6.220000e-07 65.8
8 TraesCS5B01G380900 chr5A 94.773 2028 55 17 152 2170 574786418 574784433 0.000000e+00 3110.0
9 TraesCS5B01G380900 chr5A 74.179 457 111 6 831 1282 619097928 619098382 1.640000e-42 183.0
10 TraesCS5B01G380900 chr3B 93.211 383 23 3 2191 2571 41850297 41849916 6.500000e-156 560.0
11 TraesCS5B01G380900 chr3B 92.857 378 25 2 2191 2567 29798901 29799277 5.060000e-152 547.0
12 TraesCS5B01G380900 chr4D 92.876 379 25 2 2191 2568 109918955 109918578 1.410000e-152 549.0
13 TraesCS5B01G380900 chr4D 87.143 70 6 2 86 152 206074576 206074507 2.870000e-10 76.8
14 TraesCS5B01G380900 chr2A 92.428 383 28 1 2187 2568 256808126 256807744 1.820000e-151 545.0
15 TraesCS5B01G380900 chr2A 92.188 384 26 4 2186 2568 2892440 2892060 8.470000e-150 540.0
16 TraesCS5B01G380900 chr2A 73.429 971 203 44 808 1755 114300436 114301374 2.010000e-81 313.0
17 TraesCS5B01G380900 chr7B 92.612 379 27 1 2191 2568 630894869 630895247 6.550000e-151 544.0
18 TraesCS5B01G380900 chr4B 92.612 379 26 2 2191 2568 107779779 107779402 6.550000e-151 544.0
19 TraesCS5B01G380900 chr2B 92.167 383 28 2 2191 2572 4936183 4936564 8.470000e-150 540.0
20 TraesCS5B01G380900 chr2D 72.970 973 204 49 808 1755 112865096 112866034 4.380000e-73 285.0
21 TraesCS5B01G380900 chr6D 94.340 53 2 1 101 152 308899382 308899330 2.220000e-11 80.5
22 TraesCS5B01G380900 chr6A 94.340 53 2 1 101 152 99403182 99403130 2.220000e-11 80.5
23 TraesCS5B01G380900 chr6A 91.525 59 4 1 95 152 607453802 607453860 2.220000e-11 80.5
24 TraesCS5B01G380900 chr7A 91.379 58 3 2 96 152 290618434 290618490 7.980000e-11 78.7
25 TraesCS5B01G380900 chr4A 94.118 51 2 1 94 143 136431366 136431416 2.870000e-10 76.8
26 TraesCS5B01G380900 chr1D 87.879 66 5 3 91 153 342169388 342169323 1.030000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G380900 chr5B 558685634 558688323 2689 True 4968.000 4968 100.0000 1 2690 1 chr5B.!!$R1 2689
1 TraesCS5B01G380900 chr5D 456750790 456754022 3232 True 898.025 3290 93.0825 1 2649 4 chr5D.!!$R1 2648
2 TraesCS5B01G380900 chr5A 574784433 574786418 1985 True 3110.000 3110 94.7730 152 2170 1 chr5A.!!$R1 2018
3 TraesCS5B01G380900 chr2A 114300436 114301374 938 False 313.000 313 73.4290 808 1755 1 chr2A.!!$F1 947
4 TraesCS5B01G380900 chr2D 112865096 112866034 938 False 285.000 285 72.9700 808 1755 1 chr2D.!!$F1 947

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
785 1771 0.958382 ATGCACGCGGAAAGCCTTTA 60.958 50.0 12.47 0.0 44.76 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2223 3293 0.036388 GTGATTGCTTGGTCCTCGGA 60.036 55.0 0.0 0.0 0.0 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 994 1.386748 GAATTCGCCGCAAGCTTTTTC 59.613 47.619 0.00 0.00 40.39 2.29
94 999 1.400888 CGCCGCAAGCTTTTTCACATA 60.401 47.619 0.00 0.00 40.39 2.29
111 1016 6.971726 TCACATATAATGTACTCCCTCGTT 57.028 37.500 0.00 0.00 42.70 3.85
123 1028 7.262772 TGTACTCCCTCGTTCACAAATATAAG 58.737 38.462 0.00 0.00 0.00 1.73
224 1196 3.825014 TGTGGATAGTTCCTATAGCGGTC 59.175 47.826 0.00 0.00 43.07 4.79
276 1249 1.206849 TCAATACGATGCAGCACCTGA 59.793 47.619 1.53 0.00 32.44 3.86
340 1324 4.813697 AGAAAGAGCAGAGTTTGACACTTC 59.186 41.667 0.00 0.00 35.01 3.01
437 1421 8.710749 TGCTCAAATCCTTATTTTAGCCATAT 57.289 30.769 12.15 0.00 45.55 1.78
645 1630 5.178252 AGCGACCATGAATTAATTCGATGAG 59.822 40.000 25.80 20.75 39.62 2.90
694 1679 3.615496 CACAAATGCAGCTTAGAATTGCC 59.385 43.478 0.00 0.00 37.03 4.52
782 1768 3.434319 CATGCACGCGGAAAGCCT 61.434 61.111 12.47 0.00 44.76 4.58
783 1769 2.672996 ATGCACGCGGAAAGCCTT 60.673 55.556 12.47 0.00 44.76 4.35
784 1770 2.268076 ATGCACGCGGAAAGCCTTT 61.268 52.632 12.47 0.00 44.76 3.11
785 1771 0.958382 ATGCACGCGGAAAGCCTTTA 60.958 50.000 12.47 0.00 44.76 1.85
786 1772 1.167155 TGCACGCGGAAAGCCTTTAA 61.167 50.000 12.47 0.00 44.76 1.52
1068 2054 1.694133 CCTCCAGGCTCTCCATGTCC 61.694 65.000 0.00 0.00 33.74 4.02
1113 2171 0.318699 CGAACTCGTTGTGGCTGAGA 60.319 55.000 0.00 0.00 33.93 3.27
1275 2333 3.685214 GAGCACGATGACCGACGCT 62.685 63.158 0.00 0.00 46.91 5.07
1410 2468 0.314302 AGTCGTTGAACCTGAGGTCG 59.686 55.000 3.76 4.07 33.12 4.79
1443 2505 1.216710 CGGCAGAGAGGTGAGGAAC 59.783 63.158 0.00 0.00 0.00 3.62
1707 2769 4.196778 TTGCACACGAAGGGGCCA 62.197 61.111 4.39 0.00 0.00 5.36
1886 2948 0.985490 AGACATGGAAGGAGGAGGGC 60.985 60.000 0.00 0.00 0.00 5.19
1921 2983 1.276421 GTTGGAGAGCTCTTGTGGCTA 59.724 52.381 19.36 0.00 40.40 3.93
2066 3128 7.255695 GGTGGTTATATATACTGGTTTTTGGGC 60.256 40.741 0.00 0.00 0.00 5.36
2102 3164 7.375106 AGAAGATGATCACTAGTTTTGCTTG 57.625 36.000 0.00 0.00 0.00 4.01
2119 3181 2.163010 GCTTGGTCATGGATGTTGACTG 59.837 50.000 4.07 0.00 42.48 3.51
2179 3249 8.182227 GGTATCTTCTTTCTTTAATTGGTTCGG 58.818 37.037 0.00 0.00 0.00 4.30
2185 3255 4.577988 TCTTTAATTGGTTCGGGGATGA 57.422 40.909 0.00 0.00 0.00 2.92
2190 3260 0.695924 TTGGTTCGGGGATGACATGT 59.304 50.000 0.00 0.00 0.00 3.21
2191 3261 0.035534 TGGTTCGGGGATGACATGTG 60.036 55.000 1.15 0.00 0.00 3.21
2192 3262 0.035439 GGTTCGGGGATGACATGTGT 60.035 55.000 1.15 0.00 0.00 3.72
2193 3263 1.613255 GGTTCGGGGATGACATGTGTT 60.613 52.381 1.15 0.00 0.00 3.32
2194 3264 2.355310 GGTTCGGGGATGACATGTGTTA 60.355 50.000 1.15 0.00 0.00 2.41
2195 3265 2.936498 GTTCGGGGATGACATGTGTTAG 59.064 50.000 1.15 0.00 0.00 2.34
2196 3266 2.462723 TCGGGGATGACATGTGTTAGA 58.537 47.619 1.15 0.00 0.00 2.10
2197 3267 2.835156 TCGGGGATGACATGTGTTAGAA 59.165 45.455 1.15 0.00 0.00 2.10
2198 3268 3.454447 TCGGGGATGACATGTGTTAGAAT 59.546 43.478 1.15 0.00 0.00 2.40
2199 3269 4.651962 TCGGGGATGACATGTGTTAGAATA 59.348 41.667 1.15 0.00 0.00 1.75
2200 3270 5.129650 TCGGGGATGACATGTGTTAGAATAA 59.870 40.000 1.15 0.00 0.00 1.40
2201 3271 5.820423 CGGGGATGACATGTGTTAGAATAAA 59.180 40.000 1.15 0.00 0.00 1.40
2202 3272 6.486657 CGGGGATGACATGTGTTAGAATAAAT 59.513 38.462 1.15 0.00 0.00 1.40
2203 3273 7.307989 CGGGGATGACATGTGTTAGAATAAATC 60.308 40.741 1.15 0.00 0.00 2.17
2204 3274 7.721399 GGGGATGACATGTGTTAGAATAAATCT 59.279 37.037 1.15 0.00 42.48 2.40
2205 3275 8.562892 GGGATGACATGTGTTAGAATAAATCTG 58.437 37.037 1.15 0.00 39.30 2.90
2206 3276 9.330063 GGATGACATGTGTTAGAATAAATCTGA 57.670 33.333 1.15 0.00 39.30 3.27
2208 3278 8.722480 TGACATGTGTTAGAATAAATCTGAGG 57.278 34.615 1.15 0.00 39.30 3.86
2209 3279 7.280876 TGACATGTGTTAGAATAAATCTGAGGC 59.719 37.037 1.15 0.00 39.30 4.70
2210 3280 7.112122 ACATGTGTTAGAATAAATCTGAGGCA 58.888 34.615 0.00 0.00 39.30 4.75
2211 3281 7.776969 ACATGTGTTAGAATAAATCTGAGGCAT 59.223 33.333 0.00 0.00 39.30 4.40
2212 3282 9.276590 CATGTGTTAGAATAAATCTGAGGCATA 57.723 33.333 0.00 0.00 39.30 3.14
2213 3283 8.662781 TGTGTTAGAATAAATCTGAGGCATAC 57.337 34.615 0.00 0.00 39.30 2.39
2214 3284 7.715249 TGTGTTAGAATAAATCTGAGGCATACC 59.285 37.037 0.00 0.00 39.30 2.73
2215 3285 6.929049 TGTTAGAATAAATCTGAGGCATACCG 59.071 38.462 0.00 0.00 39.14 4.02
2216 3286 5.552870 AGAATAAATCTGAGGCATACCGT 57.447 39.130 0.00 0.00 37.87 4.83
2217 3287 5.930135 AGAATAAATCTGAGGCATACCGTT 58.070 37.500 0.00 0.00 37.87 4.44
2218 3288 5.760253 AGAATAAATCTGAGGCATACCGTTG 59.240 40.000 0.00 0.00 37.87 4.10
2219 3289 3.627395 AAATCTGAGGCATACCGTTGA 57.373 42.857 0.00 0.00 42.76 3.18
2220 3290 3.845781 AATCTGAGGCATACCGTTGAT 57.154 42.857 0.00 0.00 42.76 2.57
2221 3291 2.890808 TCTGAGGCATACCGTTGATC 57.109 50.000 0.00 0.00 42.76 2.92
2222 3292 2.107366 TCTGAGGCATACCGTTGATCA 58.893 47.619 0.00 0.00 42.76 2.92
2223 3293 2.700371 TCTGAGGCATACCGTTGATCAT 59.300 45.455 0.00 0.00 42.76 2.45
2224 3294 3.062763 CTGAGGCATACCGTTGATCATC 58.937 50.000 0.00 0.00 42.76 2.92
2225 3295 2.224281 TGAGGCATACCGTTGATCATCC 60.224 50.000 0.00 0.00 42.76 3.51
2226 3296 1.148310 GGCATACCGTTGATCATCCG 58.852 55.000 0.00 2.00 0.00 4.18
2227 3297 1.270094 GGCATACCGTTGATCATCCGA 60.270 52.381 14.77 0.00 0.00 4.55
2228 3298 2.061773 GCATACCGTTGATCATCCGAG 58.938 52.381 14.77 8.71 0.00 4.63
2229 3299 2.677199 CATACCGTTGATCATCCGAGG 58.323 52.381 14.77 8.37 0.00 4.63
2230 3300 2.061509 TACCGTTGATCATCCGAGGA 57.938 50.000 14.77 0.00 0.00 3.71
2231 3301 0.460311 ACCGTTGATCATCCGAGGAC 59.540 55.000 14.77 0.00 0.00 3.85
2232 3302 0.249489 CCGTTGATCATCCGAGGACC 60.249 60.000 14.77 0.00 0.00 4.46
2233 3303 0.459899 CGTTGATCATCCGAGGACCA 59.540 55.000 9.08 0.00 0.00 4.02
2234 3304 1.134818 CGTTGATCATCCGAGGACCAA 60.135 52.381 9.08 0.00 0.00 3.67
2235 3305 2.555199 GTTGATCATCCGAGGACCAAG 58.445 52.381 0.00 0.00 0.00 3.61
2236 3306 0.465705 TGATCATCCGAGGACCAAGC 59.534 55.000 0.00 0.00 0.00 4.01
2237 3307 0.465705 GATCATCCGAGGACCAAGCA 59.534 55.000 0.00 0.00 0.00 3.91
2238 3308 0.911769 ATCATCCGAGGACCAAGCAA 59.088 50.000 0.00 0.00 0.00 3.91
2239 3309 0.911769 TCATCCGAGGACCAAGCAAT 59.088 50.000 0.00 0.00 0.00 3.56
2240 3310 1.134401 TCATCCGAGGACCAAGCAATC 60.134 52.381 0.00 0.00 0.00 2.67
2241 3311 0.911769 ATCCGAGGACCAAGCAATCA 59.088 50.000 0.00 0.00 0.00 2.57
2242 3312 0.036388 TCCGAGGACCAAGCAATCAC 60.036 55.000 0.00 0.00 0.00 3.06
2243 3313 0.321564 CCGAGGACCAAGCAATCACA 60.322 55.000 0.00 0.00 0.00 3.58
2244 3314 0.798776 CGAGGACCAAGCAATCACAC 59.201 55.000 0.00 0.00 0.00 3.82
2245 3315 0.798776 GAGGACCAAGCAATCACACG 59.201 55.000 0.00 0.00 0.00 4.49
2246 3316 0.396435 AGGACCAAGCAATCACACGA 59.604 50.000 0.00 0.00 0.00 4.35
2247 3317 0.798776 GGACCAAGCAATCACACGAG 59.201 55.000 0.00 0.00 0.00 4.18
2248 3318 1.608025 GGACCAAGCAATCACACGAGA 60.608 52.381 0.00 0.00 0.00 4.04
2249 3319 1.461127 GACCAAGCAATCACACGAGAC 59.539 52.381 0.00 0.00 0.00 3.36
2250 3320 1.202639 ACCAAGCAATCACACGAGACA 60.203 47.619 0.00 0.00 0.00 3.41
2251 3321 1.195448 CCAAGCAATCACACGAGACAC 59.805 52.381 0.00 0.00 0.00 3.67
2253 3323 0.313987 AGCAATCACACGAGACACGA 59.686 50.000 0.00 0.00 45.77 4.35
2254 3324 0.435008 GCAATCACACGAGACACGAC 59.565 55.000 0.00 0.00 45.77 4.34
2255 3325 1.766069 CAATCACACGAGACACGACA 58.234 50.000 0.00 0.00 45.77 4.35
2256 3326 2.328473 CAATCACACGAGACACGACAT 58.672 47.619 0.00 0.00 45.77 3.06
2257 3327 2.264109 ATCACACGAGACACGACATC 57.736 50.000 0.00 0.00 45.77 3.06
2258 3328 0.948678 TCACACGAGACACGACATCA 59.051 50.000 0.00 0.00 45.77 3.07
2259 3329 1.335496 TCACACGAGACACGACATCAA 59.665 47.619 0.00 0.00 45.77 2.57
2260 3330 1.716050 CACACGAGACACGACATCAAG 59.284 52.381 0.00 0.00 45.77 3.02
2261 3331 1.607148 ACACGAGACACGACATCAAGA 59.393 47.619 0.00 0.00 45.77 3.02
2262 3332 2.229062 ACACGAGACACGACATCAAGAT 59.771 45.455 0.00 0.00 45.77 2.40
2263 3333 3.245797 CACGAGACACGACATCAAGATT 58.754 45.455 0.00 0.00 45.77 2.40
2264 3334 3.675225 CACGAGACACGACATCAAGATTT 59.325 43.478 0.00 0.00 45.77 2.17
2265 3335 3.675225 ACGAGACACGACATCAAGATTTG 59.325 43.478 0.00 0.00 45.77 2.32
2266 3336 3.675225 CGAGACACGACATCAAGATTTGT 59.325 43.478 0.00 0.00 45.77 2.83
2267 3337 4.150627 CGAGACACGACATCAAGATTTGTT 59.849 41.667 0.00 0.00 45.77 2.83
2268 3338 5.344933 CGAGACACGACATCAAGATTTGTTA 59.655 40.000 0.00 0.00 45.77 2.41
2269 3339 6.128929 CGAGACACGACATCAAGATTTGTTAA 60.129 38.462 0.00 0.00 45.77 2.01
2270 3340 6.888430 AGACACGACATCAAGATTTGTTAAC 58.112 36.000 0.00 0.00 0.00 2.01
2271 3341 5.675970 ACACGACATCAAGATTTGTTAACG 58.324 37.500 0.26 0.00 0.00 3.18
2272 3342 5.464057 ACACGACATCAAGATTTGTTAACGA 59.536 36.000 0.26 0.00 0.00 3.85
2273 3343 6.009474 CACGACATCAAGATTTGTTAACGAG 58.991 40.000 0.26 0.00 0.00 4.18
2274 3344 5.120208 ACGACATCAAGATTTGTTAACGAGG 59.880 40.000 0.26 0.00 0.00 4.63
2275 3345 5.120208 CGACATCAAGATTTGTTAACGAGGT 59.880 40.000 0.26 0.00 0.00 3.85
2276 3346 6.347402 CGACATCAAGATTTGTTAACGAGGTT 60.347 38.462 0.26 0.00 0.00 3.50
2277 3347 6.899114 ACATCAAGATTTGTTAACGAGGTTC 58.101 36.000 0.26 0.00 0.00 3.62
2278 3348 6.485313 ACATCAAGATTTGTTAACGAGGTTCA 59.515 34.615 0.26 0.00 0.00 3.18
2279 3349 6.295039 TCAAGATTTGTTAACGAGGTTCAC 57.705 37.500 0.26 0.00 0.00 3.18
2280 3350 5.237779 TCAAGATTTGTTAACGAGGTTCACC 59.762 40.000 0.26 0.00 0.00 4.02
2281 3351 3.744426 AGATTTGTTAACGAGGTTCACCG 59.256 43.478 0.26 0.00 42.08 4.94
2282 3352 2.886862 TTGTTAACGAGGTTCACCGA 57.113 45.000 0.26 0.00 42.08 4.69
2283 3353 2.138596 TGTTAACGAGGTTCACCGAC 57.861 50.000 0.26 0.00 42.08 4.79
2284 3354 1.408340 TGTTAACGAGGTTCACCGACA 59.592 47.619 0.26 0.00 42.08 4.35
2285 3355 2.036217 TGTTAACGAGGTTCACCGACAT 59.964 45.455 0.26 0.00 42.08 3.06
2286 3356 2.357327 TAACGAGGTTCACCGACATG 57.643 50.000 0.00 0.00 42.08 3.21
2287 3357 0.320421 AACGAGGTTCACCGACATGG 60.320 55.000 0.00 0.00 46.41 3.66
2288 3358 2.100631 CGAGGTTCACCGACATGGC 61.101 63.158 0.00 0.00 43.94 4.40
2289 3359 1.296715 GAGGTTCACCGACATGGCT 59.703 57.895 0.00 0.00 43.94 4.75
2290 3360 0.535335 GAGGTTCACCGACATGGCTA 59.465 55.000 0.00 0.00 43.94 3.93
2291 3361 0.249398 AGGTTCACCGACATGGCTAC 59.751 55.000 0.00 0.00 43.94 3.58
2292 3362 0.036765 GGTTCACCGACATGGCTACA 60.037 55.000 0.00 0.00 43.94 2.74
2293 3363 1.406887 GGTTCACCGACATGGCTACAT 60.407 52.381 0.00 0.00 43.94 2.29
2294 3364 1.933853 GTTCACCGACATGGCTACATC 59.066 52.381 0.00 0.00 43.94 3.06
2295 3365 0.464036 TCACCGACATGGCTACATCC 59.536 55.000 0.00 0.00 43.94 3.51
2296 3366 0.532862 CACCGACATGGCTACATCCC 60.533 60.000 0.00 0.00 43.94 3.85
2297 3367 1.071471 CCGACATGGCTACATCCCC 59.929 63.158 0.00 0.00 34.35 4.81
2298 3368 1.300931 CGACATGGCTACATCCCCG 60.301 63.158 0.00 0.00 34.35 5.73
2299 3369 1.071471 GACATGGCTACATCCCCGG 59.929 63.158 0.00 0.00 34.35 5.73
2300 3370 2.397413 GACATGGCTACATCCCCGGG 62.397 65.000 15.80 15.80 34.35 5.73
2301 3371 2.854032 ATGGCTACATCCCCGGGG 60.854 66.667 35.80 35.80 29.20 5.73
2305 3375 3.560251 CTACATCCCCGGGGCCAG 61.560 72.222 36.68 27.10 34.68 4.85
2306 3376 4.096816 TACATCCCCGGGGCCAGA 62.097 66.667 36.68 19.19 34.68 3.86
2309 3379 3.774336 ATCCCCGGGGCCAGACTA 61.774 66.667 36.68 16.98 34.68 2.59
2310 3380 3.115017 ATCCCCGGGGCCAGACTAT 62.115 63.158 36.68 18.72 34.68 2.12
2311 3381 3.560251 CCCCGGGGCCAGACTATG 61.560 72.222 31.01 0.00 0.00 2.23
2319 3389 3.813596 CCAGACTATGGGCGCAAC 58.186 61.111 10.83 1.07 46.36 4.17
2320 3390 1.221840 CCAGACTATGGGCGCAACT 59.778 57.895 10.83 2.51 46.36 3.16
2321 3391 0.811616 CCAGACTATGGGCGCAACTC 60.812 60.000 10.83 2.55 46.36 3.01
2322 3392 0.811616 CAGACTATGGGCGCAACTCC 60.812 60.000 10.83 0.47 0.00 3.85
2323 3393 1.523938 GACTATGGGCGCAACTCCC 60.524 63.158 10.83 0.01 44.17 4.30
2324 3394 2.203209 CTATGGGCGCAACTCCCC 60.203 66.667 10.83 0.00 43.24 4.81
2327 3397 4.738998 TGGGCGCAACTCCCCATG 62.739 66.667 10.83 0.00 46.14 3.66
2328 3398 4.424711 GGGCGCAACTCCCCATGA 62.425 66.667 10.83 0.00 41.13 3.07
2329 3399 3.134127 GGCGCAACTCCCCATGAC 61.134 66.667 10.83 0.00 0.00 3.06
2330 3400 2.359850 GCGCAACTCCCCATGACA 60.360 61.111 0.30 0.00 0.00 3.58
2331 3401 2.690778 GCGCAACTCCCCATGACAC 61.691 63.158 0.30 0.00 0.00 3.67
2332 3402 2.040544 CGCAACTCCCCATGACACC 61.041 63.158 0.00 0.00 0.00 4.16
2333 3403 2.040544 GCAACTCCCCATGACACCG 61.041 63.158 0.00 0.00 0.00 4.94
2334 3404 2.040544 CAACTCCCCATGACACCGC 61.041 63.158 0.00 0.00 0.00 5.68
2335 3405 2.224159 AACTCCCCATGACACCGCT 61.224 57.895 0.00 0.00 0.00 5.52
2336 3406 0.907704 AACTCCCCATGACACCGCTA 60.908 55.000 0.00 0.00 0.00 4.26
2337 3407 1.144057 CTCCCCATGACACCGCTAC 59.856 63.158 0.00 0.00 0.00 3.58
2338 3408 1.610967 TCCCCATGACACCGCTACA 60.611 57.895 0.00 0.00 0.00 2.74
2339 3409 1.195442 TCCCCATGACACCGCTACAA 61.195 55.000 0.00 0.00 0.00 2.41
2340 3410 0.107214 CCCCATGACACCGCTACAAT 60.107 55.000 0.00 0.00 0.00 2.71
2341 3411 1.140052 CCCCATGACACCGCTACAATA 59.860 52.381 0.00 0.00 0.00 1.90
2342 3412 2.210116 CCCATGACACCGCTACAATAC 58.790 52.381 0.00 0.00 0.00 1.89
2343 3413 2.158957 CCCATGACACCGCTACAATACT 60.159 50.000 0.00 0.00 0.00 2.12
2344 3414 2.866156 CCATGACACCGCTACAATACTG 59.134 50.000 0.00 0.00 0.00 2.74
2345 3415 2.004583 TGACACCGCTACAATACTGC 57.995 50.000 0.00 0.00 0.00 4.40
2346 3416 1.273886 TGACACCGCTACAATACTGCA 59.726 47.619 0.00 0.00 0.00 4.41
2347 3417 1.659098 GACACCGCTACAATACTGCAC 59.341 52.381 0.00 0.00 0.00 4.57
2348 3418 1.001520 ACACCGCTACAATACTGCACA 59.998 47.619 0.00 0.00 0.00 4.57
2349 3419 1.393539 CACCGCTACAATACTGCACAC 59.606 52.381 0.00 0.00 0.00 3.82
2350 3420 1.006832 CCGCTACAATACTGCACACC 58.993 55.000 0.00 0.00 0.00 4.16
2351 3421 0.645355 CGCTACAATACTGCACACCG 59.355 55.000 0.00 0.00 0.00 4.94
2352 3422 1.006832 GCTACAATACTGCACACCGG 58.993 55.000 0.00 0.00 0.00 5.28
2353 3423 1.006832 CTACAATACTGCACACCGGC 58.993 55.000 0.00 0.00 0.00 6.13
2354 3424 0.321996 TACAATACTGCACACCGGCA 59.678 50.000 0.00 0.00 42.53 5.69
2355 3425 1.234615 ACAATACTGCACACCGGCAC 61.235 55.000 0.00 0.00 39.25 5.01
2356 3426 1.674322 AATACTGCACACCGGCACC 60.674 57.895 0.00 0.00 39.25 5.01
2357 3427 3.622060 ATACTGCACACCGGCACCC 62.622 63.158 0.00 0.00 39.25 4.61
2410 3480 3.224606 CGCGTCTGTGCTATTATGTTG 57.775 47.619 0.00 0.00 0.00 3.33
2411 3481 2.033747 CGCGTCTGTGCTATTATGTTGG 60.034 50.000 0.00 0.00 0.00 3.77
2412 3482 2.286418 GCGTCTGTGCTATTATGTTGGC 60.286 50.000 0.00 0.00 0.00 4.52
2413 3483 2.935849 CGTCTGTGCTATTATGTTGGCA 59.064 45.455 0.00 0.00 0.00 4.92
2414 3484 3.561310 CGTCTGTGCTATTATGTTGGCAT 59.439 43.478 0.00 0.00 37.05 4.40
2415 3485 4.749598 CGTCTGTGCTATTATGTTGGCATA 59.250 41.667 0.00 0.00 37.05 3.14
2416 3486 5.107337 CGTCTGTGCTATTATGTTGGCATAG 60.107 44.000 0.00 0.00 42.44 2.23
2417 3487 5.991606 GTCTGTGCTATTATGTTGGCATAGA 59.008 40.000 8.65 8.65 45.54 1.98
2418 3488 6.772605 TCTGTGCTATTATGTTGGCATAGAT 58.227 36.000 8.65 0.00 43.91 1.98
2419 3489 7.226441 TCTGTGCTATTATGTTGGCATAGATT 58.774 34.615 8.65 0.00 43.91 2.40
2420 3490 8.374743 TCTGTGCTATTATGTTGGCATAGATTA 58.625 33.333 8.65 0.00 43.91 1.75
2421 3491 9.170734 CTGTGCTATTATGTTGGCATAGATTAT 57.829 33.333 4.92 0.00 43.28 1.28
2428 3498 9.890629 ATTATGTTGGCATAGATTATATCGTGT 57.109 29.630 0.00 0.00 38.64 4.49
2429 3499 7.601073 ATGTTGGCATAGATTATATCGTGTG 57.399 36.000 0.00 0.00 32.73 3.82
2430 3500 6.521162 TGTTGGCATAGATTATATCGTGTGT 58.479 36.000 0.00 0.00 0.00 3.72
2431 3501 6.645003 TGTTGGCATAGATTATATCGTGTGTC 59.355 38.462 0.00 0.00 0.00 3.67
2432 3502 6.590234 TGGCATAGATTATATCGTGTGTCT 57.410 37.500 0.00 0.00 0.00 3.41
2433 3503 7.696992 TGGCATAGATTATATCGTGTGTCTA 57.303 36.000 0.00 0.00 0.00 2.59
2434 3504 7.535997 TGGCATAGATTATATCGTGTGTCTAC 58.464 38.462 0.00 0.00 0.00 2.59
2435 3505 6.973474 GGCATAGATTATATCGTGTGTCTACC 59.027 42.308 0.00 0.00 0.00 3.18
2436 3506 6.973474 GCATAGATTATATCGTGTGTCTACCC 59.027 42.308 0.00 0.00 0.00 3.69
2437 3507 5.979288 AGATTATATCGTGTGTCTACCCC 57.021 43.478 0.00 0.00 0.00 4.95
2438 3508 4.771054 AGATTATATCGTGTGTCTACCCCC 59.229 45.833 0.00 0.00 0.00 5.40
2439 3509 1.325355 ATATCGTGTGTCTACCCCCG 58.675 55.000 0.00 0.00 0.00 5.73
2440 3510 1.386525 TATCGTGTGTCTACCCCCGC 61.387 60.000 0.00 0.00 0.00 6.13
2441 3511 3.379445 CGTGTGTCTACCCCCGCT 61.379 66.667 0.00 0.00 0.00 5.52
2442 3512 2.048023 CGTGTGTCTACCCCCGCTA 61.048 63.158 0.00 0.00 0.00 4.26
2443 3513 1.389609 CGTGTGTCTACCCCCGCTAT 61.390 60.000 0.00 0.00 0.00 2.97
2444 3514 1.696063 GTGTGTCTACCCCCGCTATA 58.304 55.000 0.00 0.00 0.00 1.31
2445 3515 2.245582 GTGTGTCTACCCCCGCTATAT 58.754 52.381 0.00 0.00 0.00 0.86
2446 3516 3.424703 GTGTGTCTACCCCCGCTATATA 58.575 50.000 0.00 0.00 0.00 0.86
2447 3517 4.021916 GTGTGTCTACCCCCGCTATATAT 58.978 47.826 0.00 0.00 0.00 0.86
2448 3518 4.021229 TGTGTCTACCCCCGCTATATATG 58.979 47.826 0.00 0.00 0.00 1.78
2449 3519 4.264038 TGTGTCTACCCCCGCTATATATGA 60.264 45.833 0.00 0.00 0.00 2.15
2450 3520 4.338682 GTGTCTACCCCCGCTATATATGAG 59.661 50.000 0.00 0.00 0.00 2.90
2451 3521 4.228895 TGTCTACCCCCGCTATATATGAGA 59.771 45.833 0.00 0.00 0.00 3.27
2452 3522 4.822896 GTCTACCCCCGCTATATATGAGAG 59.177 50.000 0.00 0.00 0.00 3.20
2453 3523 3.033659 ACCCCCGCTATATATGAGAGG 57.966 52.381 0.00 1.05 33.94 3.69
2454 3524 1.689273 CCCCCGCTATATATGAGAGGC 59.311 57.143 0.00 0.00 32.89 4.70
2455 3525 1.689273 CCCCGCTATATATGAGAGGCC 59.311 57.143 0.00 0.00 32.89 5.19
2456 3526 2.672098 CCCGCTATATATGAGAGGCCT 58.328 52.381 3.86 3.86 32.89 5.19
2457 3527 3.436615 CCCCGCTATATATGAGAGGCCTA 60.437 52.174 4.42 0.00 32.89 3.93
2458 3528 3.823873 CCCGCTATATATGAGAGGCCTAG 59.176 52.174 4.42 0.00 32.89 3.02
2459 3529 3.823873 CCGCTATATATGAGAGGCCTAGG 59.176 52.174 4.42 3.67 0.00 3.02
2460 3530 4.446455 CCGCTATATATGAGAGGCCTAGGA 60.446 50.000 14.75 0.00 0.00 2.94
2461 3531 5.321102 CGCTATATATGAGAGGCCTAGGAT 58.679 45.833 14.75 0.00 0.00 3.24
2462 3532 6.477253 CGCTATATATGAGAGGCCTAGGATA 58.523 44.000 14.75 1.98 0.00 2.59
2463 3533 6.373216 CGCTATATATGAGAGGCCTAGGATAC 59.627 46.154 14.75 1.17 0.00 2.24
2464 3534 7.235079 GCTATATATGAGAGGCCTAGGATACA 58.765 42.308 14.75 5.03 41.41 2.29
2465 3535 7.726291 GCTATATATGAGAGGCCTAGGATACAA 59.274 40.741 14.75 0.00 41.41 2.41
2466 3536 9.295825 CTATATATGAGAGGCCTAGGATACAAG 57.704 40.741 14.75 0.00 41.41 3.16
2467 3537 3.689872 TGAGAGGCCTAGGATACAAGT 57.310 47.619 14.75 0.00 41.41 3.16
2468 3538 3.300388 TGAGAGGCCTAGGATACAAGTG 58.700 50.000 14.75 0.00 41.41 3.16
2469 3539 3.301274 GAGAGGCCTAGGATACAAGTGT 58.699 50.000 14.75 0.00 41.41 3.55
2470 3540 3.301274 AGAGGCCTAGGATACAAGTGTC 58.699 50.000 14.75 0.00 41.41 3.67
2471 3541 2.365941 GAGGCCTAGGATACAAGTGTCC 59.634 54.545 14.75 7.82 40.69 4.02
2488 3558 2.706339 TCCTACTAGGACACGACTCC 57.294 55.000 0.03 0.00 40.06 3.85
2489 3559 1.911357 TCCTACTAGGACACGACTCCA 59.089 52.381 0.03 0.00 40.06 3.86
2490 3560 2.508716 TCCTACTAGGACACGACTCCAT 59.491 50.000 0.03 0.00 40.06 3.41
2491 3561 3.713248 TCCTACTAGGACACGACTCCATA 59.287 47.826 0.03 0.00 40.06 2.74
2492 3562 4.350225 TCCTACTAGGACACGACTCCATAT 59.650 45.833 0.03 0.00 40.06 1.78
2493 3563 4.696402 CCTACTAGGACACGACTCCATATC 59.304 50.000 0.00 0.00 37.67 1.63
2494 3564 3.488363 ACTAGGACACGACTCCATATCC 58.512 50.000 0.00 0.00 31.94 2.59
2495 3565 1.705873 AGGACACGACTCCATATCCC 58.294 55.000 6.01 0.00 31.94 3.85
2496 3566 1.063190 AGGACACGACTCCATATCCCA 60.063 52.381 6.01 0.00 31.94 4.37
2497 3567 1.971357 GGACACGACTCCATATCCCAT 59.029 52.381 0.00 0.00 0.00 4.00
2498 3568 2.289072 GGACACGACTCCATATCCCATG 60.289 54.545 0.00 0.00 0.00 3.66
2499 3569 2.365617 GACACGACTCCATATCCCATGT 59.634 50.000 0.00 0.00 0.00 3.21
2500 3570 3.572642 ACACGACTCCATATCCCATGTA 58.427 45.455 0.00 0.00 0.00 2.29
2501 3571 3.964688 ACACGACTCCATATCCCATGTAA 59.035 43.478 0.00 0.00 0.00 2.41
2502 3572 4.407621 ACACGACTCCATATCCCATGTAAA 59.592 41.667 0.00 0.00 0.00 2.01
2503 3573 4.750098 CACGACTCCATATCCCATGTAAAC 59.250 45.833 0.00 0.00 0.00 2.01
2504 3574 4.407621 ACGACTCCATATCCCATGTAAACA 59.592 41.667 0.00 0.00 0.00 2.83
2505 3575 4.750098 CGACTCCATATCCCATGTAAACAC 59.250 45.833 0.00 0.00 0.00 3.32
2506 3576 5.680619 GACTCCATATCCCATGTAAACACA 58.319 41.667 0.00 0.00 0.00 3.72
2507 3577 6.073447 ACTCCATATCCCATGTAAACACAA 57.927 37.500 0.00 0.00 0.00 3.33
2508 3578 6.672593 ACTCCATATCCCATGTAAACACAAT 58.327 36.000 0.00 0.00 0.00 2.71
2509 3579 7.811282 ACTCCATATCCCATGTAAACACAATA 58.189 34.615 0.00 0.00 0.00 1.90
2510 3580 7.719633 ACTCCATATCCCATGTAAACACAATAC 59.280 37.037 0.00 0.00 0.00 1.89
2511 3581 7.578203 TCCATATCCCATGTAAACACAATACA 58.422 34.615 0.00 0.00 37.64 2.29
2512 3582 8.055790 TCCATATCCCATGTAAACACAATACAA 58.944 33.333 0.00 0.00 36.88 2.41
2513 3583 8.134895 CCATATCCCATGTAAACACAATACAAC 58.865 37.037 0.00 0.00 36.88 3.32
2514 3584 8.902806 CATATCCCATGTAAACACAATACAACT 58.097 33.333 0.00 0.00 36.88 3.16
2516 3586 7.675962 TCCCATGTAAACACAATACAACTAC 57.324 36.000 0.00 0.00 36.88 2.73
2517 3587 7.225011 TCCCATGTAAACACAATACAACTACA 58.775 34.615 0.00 0.00 36.88 2.74
2518 3588 7.720074 TCCCATGTAAACACAATACAACTACAA 59.280 33.333 0.00 0.00 36.88 2.41
2519 3589 8.020819 CCCATGTAAACACAATACAACTACAAG 58.979 37.037 0.00 0.00 36.88 3.16
2520 3590 8.564574 CCATGTAAACACAATACAACTACAAGT 58.435 33.333 0.00 0.00 36.88 3.16
2521 3591 9.594038 CATGTAAACACAATACAACTACAAGTC 57.406 33.333 0.00 0.00 36.88 3.01
2522 3592 8.145316 TGTAAACACAATACAACTACAAGTCC 57.855 34.615 0.00 0.00 30.65 3.85
2523 3593 7.769507 TGTAAACACAATACAACTACAAGTCCA 59.230 33.333 0.00 0.00 30.65 4.02
2524 3594 7.633193 AAACACAATACAACTACAAGTCCAA 57.367 32.000 0.00 0.00 0.00 3.53
2525 3595 7.817418 AACACAATACAACTACAAGTCCAAT 57.183 32.000 0.00 0.00 0.00 3.16
2526 3596 7.817418 ACACAATACAACTACAAGTCCAATT 57.183 32.000 0.00 0.00 0.00 2.32
2527 3597 7.648142 ACACAATACAACTACAAGTCCAATTG 58.352 34.615 0.00 0.00 36.22 2.32
2528 3598 7.284489 ACACAATACAACTACAAGTCCAATTGT 59.716 33.333 4.43 0.00 45.19 2.71
2529 3599 8.779303 CACAATACAACTACAAGTCCAATTGTA 58.221 33.333 4.43 0.15 43.10 2.41
2530 3600 9.344772 ACAATACAACTACAAGTCCAATTGTAA 57.655 29.630 4.43 0.00 43.22 2.41
2531 3601 9.607285 CAATACAACTACAAGTCCAATTGTAAC 57.393 33.333 4.43 2.48 43.22 2.50
2532 3602 6.628919 ACAACTACAAGTCCAATTGTAACC 57.371 37.500 4.43 0.00 43.22 2.85
2533 3603 6.362248 ACAACTACAAGTCCAATTGTAACCT 58.638 36.000 4.43 0.00 43.22 3.50
2534 3604 7.511268 ACAACTACAAGTCCAATTGTAACCTA 58.489 34.615 4.43 0.00 43.22 3.08
2535 3605 7.443272 ACAACTACAAGTCCAATTGTAACCTAC 59.557 37.037 4.43 0.00 43.22 3.18
2536 3606 6.470278 ACTACAAGTCCAATTGTAACCTACC 58.530 40.000 4.43 0.00 43.22 3.18
2537 3607 5.578157 ACAAGTCCAATTGTAACCTACCT 57.422 39.130 4.43 0.00 41.53 3.08
2538 3608 5.948842 ACAAGTCCAATTGTAACCTACCTT 58.051 37.500 4.43 0.00 41.53 3.50
2539 3609 5.768164 ACAAGTCCAATTGTAACCTACCTTG 59.232 40.000 4.43 6.83 41.53 3.61
2540 3610 5.578157 AGTCCAATTGTAACCTACCTTGT 57.422 39.130 4.43 0.00 0.00 3.16
2541 3611 6.691255 AGTCCAATTGTAACCTACCTTGTA 57.309 37.500 4.43 0.00 0.00 2.41
2542 3612 6.470278 AGTCCAATTGTAACCTACCTTGTAC 58.530 40.000 4.43 0.00 0.00 2.90
2543 3613 6.043474 AGTCCAATTGTAACCTACCTTGTACA 59.957 38.462 4.43 0.00 0.00 2.90
2544 3614 6.148315 GTCCAATTGTAACCTACCTTGTACAC 59.852 42.308 4.43 0.00 0.00 2.90
2545 3615 5.998981 CCAATTGTAACCTACCTTGTACACA 59.001 40.000 4.43 0.00 0.00 3.72
2546 3616 6.487331 CCAATTGTAACCTACCTTGTACACAA 59.513 38.462 4.43 0.00 0.00 3.33
2547 3617 7.175990 CCAATTGTAACCTACCTTGTACACAAT 59.824 37.037 4.43 0.00 35.07 2.71
2548 3618 9.221933 CAATTGTAACCTACCTTGTACACAATA 57.778 33.333 0.00 0.00 33.70 1.90
2549 3619 9.969001 AATTGTAACCTACCTTGTACACAATAT 57.031 29.630 0.00 0.00 33.70 1.28
2550 3620 9.969001 ATTGTAACCTACCTTGTACACAATATT 57.031 29.630 0.00 0.00 33.36 1.28
2551 3621 9.439500 TTGTAACCTACCTTGTACACAATATTC 57.561 33.333 0.00 0.00 35.02 1.75
2552 3622 7.760794 TGTAACCTACCTTGTACACAATATTCG 59.239 37.037 0.00 0.00 35.02 3.34
2553 3623 6.534475 ACCTACCTTGTACACAATATTCGA 57.466 37.500 0.00 0.00 35.02 3.71
2554 3624 6.335777 ACCTACCTTGTACACAATATTCGAC 58.664 40.000 0.00 0.00 35.02 4.20
2555 3625 6.071221 ACCTACCTTGTACACAATATTCGACA 60.071 38.462 0.00 0.00 35.02 4.35
2556 3626 6.255020 CCTACCTTGTACACAATATTCGACAC 59.745 42.308 0.00 0.00 35.02 3.67
2557 3627 5.543714 ACCTTGTACACAATATTCGACACA 58.456 37.500 0.00 0.00 35.02 3.72
2558 3628 5.992829 ACCTTGTACACAATATTCGACACAA 59.007 36.000 0.00 0.00 35.02 3.33
2559 3629 6.073440 ACCTTGTACACAATATTCGACACAAC 60.073 38.462 0.00 0.00 35.02 3.32
2560 3630 6.147164 CCTTGTACACAATATTCGACACAACT 59.853 38.462 0.00 0.00 35.02 3.16
2561 3631 6.699895 TGTACACAATATTCGACACAACTC 57.300 37.500 0.00 0.00 0.00 3.01
2562 3632 6.452242 TGTACACAATATTCGACACAACTCT 58.548 36.000 0.00 0.00 0.00 3.24
2563 3633 7.595604 TGTACACAATATTCGACACAACTCTA 58.404 34.615 0.00 0.00 0.00 2.43
2564 3634 8.083462 TGTACACAATATTCGACACAACTCTAA 58.917 33.333 0.00 0.00 0.00 2.10
2565 3635 7.347508 ACACAATATTCGACACAACTCTAAC 57.652 36.000 0.00 0.00 0.00 2.34
2566 3636 6.926826 ACACAATATTCGACACAACTCTAACA 59.073 34.615 0.00 0.00 0.00 2.41
2567 3637 7.439955 ACACAATATTCGACACAACTCTAACAA 59.560 33.333 0.00 0.00 0.00 2.83
2568 3638 7.740346 CACAATATTCGACACAACTCTAACAAC 59.260 37.037 0.00 0.00 0.00 3.32
2569 3639 7.439955 ACAATATTCGACACAACTCTAACAACA 59.560 33.333 0.00 0.00 0.00 3.33
2570 3640 8.443160 CAATATTCGACACAACTCTAACAACAT 58.557 33.333 0.00 0.00 0.00 2.71
2571 3641 5.651172 TTCGACACAACTCTAACAACATG 57.349 39.130 0.00 0.00 0.00 3.21
2598 3668 9.758651 CCTATTATAACCAATTTTAAGGGTTGC 57.241 33.333 7.27 0.00 44.27 4.17
2606 3676 7.892609 ACCAATTTTAAGGGTTGCTTAGTTAG 58.107 34.615 0.00 0.00 0.00 2.34
2641 3711 6.884096 TGAACACAAAAATACTGCAACAAG 57.116 33.333 0.00 0.00 0.00 3.16
2643 3713 6.751425 TGAACACAAAAATACTGCAACAAGAG 59.249 34.615 0.00 0.00 0.00 2.85
2649 3719 5.824904 AAATACTGCAACAAGAGGCATAG 57.175 39.130 0.00 0.00 39.65 2.23
2650 3720 2.867109 ACTGCAACAAGAGGCATAGT 57.133 45.000 0.00 0.00 39.65 2.12
2651 3721 3.146104 ACTGCAACAAGAGGCATAGTT 57.854 42.857 0.00 0.00 39.65 2.24
2652 3722 3.490348 ACTGCAACAAGAGGCATAGTTT 58.510 40.909 0.00 0.00 39.65 2.66
2653 3723 3.891366 ACTGCAACAAGAGGCATAGTTTT 59.109 39.130 0.00 0.00 39.65 2.43
2654 3724 4.342092 ACTGCAACAAGAGGCATAGTTTTT 59.658 37.500 0.00 0.00 39.65 1.94
2677 3747 3.780804 TTTGAAGAAACTCCCGATCCA 57.219 42.857 0.00 0.00 0.00 3.41
2678 3748 4.301072 TTTGAAGAAACTCCCGATCCAT 57.699 40.909 0.00 0.00 0.00 3.41
2679 3749 4.301072 TTGAAGAAACTCCCGATCCATT 57.699 40.909 0.00 0.00 0.00 3.16
2680 3750 3.873910 TGAAGAAACTCCCGATCCATTC 58.126 45.455 0.00 0.00 0.00 2.67
2682 3752 1.831736 AGAAACTCCCGATCCATTCGT 59.168 47.619 0.00 0.00 46.65 3.85
2683 3753 3.028850 AGAAACTCCCGATCCATTCGTA 58.971 45.455 0.00 0.00 46.65 3.43
2684 3754 3.449737 AGAAACTCCCGATCCATTCGTAA 59.550 43.478 0.00 0.00 46.65 3.18
2685 3755 4.101119 AGAAACTCCCGATCCATTCGTAAT 59.899 41.667 0.00 0.00 46.65 1.89
2686 3756 3.662247 ACTCCCGATCCATTCGTAATC 57.338 47.619 0.00 0.00 46.65 1.75
2687 3757 2.963101 ACTCCCGATCCATTCGTAATCA 59.037 45.455 0.00 0.00 46.65 2.57
2688 3758 3.386726 ACTCCCGATCCATTCGTAATCAA 59.613 43.478 0.00 0.00 46.65 2.57
2689 3759 4.040461 ACTCCCGATCCATTCGTAATCAAT 59.960 41.667 0.00 0.00 46.65 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 982 7.910162 AGTACATTATATGTGAAAAAGCTTGCG 59.090 33.333 0.00 0.00 44.60 4.85
89 994 6.641314 GTGAACGAGGGAGTACATTATATGTG 59.359 42.308 2.68 0.00 44.60 3.21
94 999 5.670792 TTGTGAACGAGGGAGTACATTAT 57.329 39.130 0.00 0.00 0.00 1.28
145 1050 9.628500 AAGAAAACTTTCACTAAATGGTAGTCT 57.372 29.630 5.07 0.00 39.61 3.24
256 1229 1.206849 TCAGGTGCTGCATCGTATTGA 59.793 47.619 5.27 1.61 0.00 2.57
276 1249 5.316167 TGTCACCATTTGAACATAGAGCTT 58.684 37.500 0.00 0.00 35.39 3.74
313 1297 5.698545 GTGTCAAACTCTGCTCTTTCTGTAT 59.301 40.000 0.00 0.00 0.00 2.29
314 1298 5.050490 GTGTCAAACTCTGCTCTTTCTGTA 58.950 41.667 0.00 0.00 0.00 2.74
315 1299 3.873952 GTGTCAAACTCTGCTCTTTCTGT 59.126 43.478 0.00 0.00 0.00 3.41
381 1365 3.558418 ACTTTACGACTGTTTTGCGATGT 59.442 39.130 0.00 0.00 0.00 3.06
437 1421 8.818141 TCAAAACAAAAGTGTGACATGTAAAA 57.182 26.923 0.00 0.00 38.27 1.52
645 1630 1.137872 AGGAGCGGTGATCATCAAGAC 59.862 52.381 6.80 0.00 0.00 3.01
694 1679 3.921119 TGGTGTTAGTGGTACAGTACG 57.079 47.619 4.58 0.00 44.82 3.67
753 1739 2.267642 TGCATGGACGCACCCTAC 59.732 61.111 0.00 0.00 36.86 3.18
782 1768 0.954449 TCCGCCGCCGTGAAATTAAA 60.954 50.000 0.00 0.00 0.00 1.52
783 1769 0.954449 TTCCGCCGCCGTGAAATTAA 60.954 50.000 0.00 0.00 0.00 1.40
784 1770 1.363145 CTTCCGCCGCCGTGAAATTA 61.363 55.000 0.00 0.00 0.00 1.40
785 1771 2.670251 TTCCGCCGCCGTGAAATT 60.670 55.556 0.00 0.00 0.00 1.82
786 1772 3.124921 CTTCCGCCGCCGTGAAAT 61.125 61.111 0.00 0.00 0.00 2.17
1113 2171 0.990374 AGAAGCTCAAGGTGCTGGAT 59.010 50.000 0.00 0.00 41.03 3.41
1275 2333 1.754745 GAGCCTGACCAACTCCACA 59.245 57.895 0.00 0.00 0.00 4.17
1410 2468 1.516603 GCCGTCGCTCAAGTACCTC 60.517 63.158 0.00 0.00 0.00 3.85
1572 2634 3.775654 GACCACCTCGGCCTCCTG 61.776 72.222 0.00 0.00 39.03 3.86
1707 2769 2.737180 CTGACCGCTGACTGGTGT 59.263 61.111 0.00 0.00 40.63 4.16
1886 2948 3.118992 TCTCCAACACATCATCCTTCTCG 60.119 47.826 0.00 0.00 0.00 4.04
1921 2983 0.543749 CCCCTCTCGAAGCCAAGATT 59.456 55.000 0.00 0.00 0.00 2.40
2066 3128 0.179000 CATCTTCTCCAACCCCCTCG 59.821 60.000 0.00 0.00 0.00 4.63
2102 3164 2.787473 TCCAGTCAACATCCATGACC 57.213 50.000 0.00 0.00 46.60 4.02
2176 3246 2.462723 TCTAACACATGTCATCCCCGA 58.537 47.619 0.00 0.00 0.00 5.14
2179 3249 8.562892 CAGATTTATTCTAACACATGTCATCCC 58.437 37.037 0.00 0.00 31.77 3.85
2185 3255 7.112122 TGCCTCAGATTTATTCTAACACATGT 58.888 34.615 0.00 0.00 31.77 3.21
2190 3260 6.929049 CGGTATGCCTCAGATTTATTCTAACA 59.071 38.462 0.00 0.00 31.77 2.41
2191 3261 6.929606 ACGGTATGCCTCAGATTTATTCTAAC 59.070 38.462 0.00 0.00 31.77 2.34
2192 3262 7.062749 ACGGTATGCCTCAGATTTATTCTAA 57.937 36.000 0.00 0.00 31.77 2.10
2193 3263 6.665992 ACGGTATGCCTCAGATTTATTCTA 57.334 37.500 0.00 0.00 31.77 2.10
2194 3264 5.552870 ACGGTATGCCTCAGATTTATTCT 57.447 39.130 0.00 0.00 33.90 2.40
2195 3265 5.758296 TCAACGGTATGCCTCAGATTTATTC 59.242 40.000 0.00 0.00 0.00 1.75
2196 3266 5.680619 TCAACGGTATGCCTCAGATTTATT 58.319 37.500 0.00 0.00 0.00 1.40
2197 3267 5.290493 TCAACGGTATGCCTCAGATTTAT 57.710 39.130 0.00 0.00 0.00 1.40
2198 3268 4.746535 TCAACGGTATGCCTCAGATTTA 57.253 40.909 0.00 0.00 0.00 1.40
2199 3269 3.627395 TCAACGGTATGCCTCAGATTT 57.373 42.857 0.00 0.00 0.00 2.17
2200 3270 3.134623 TGATCAACGGTATGCCTCAGATT 59.865 43.478 0.00 0.00 0.00 2.40
2201 3271 2.700371 TGATCAACGGTATGCCTCAGAT 59.300 45.455 0.00 0.00 0.00 2.90
2202 3272 2.107366 TGATCAACGGTATGCCTCAGA 58.893 47.619 0.00 0.00 0.00 3.27
2203 3273 2.602257 TGATCAACGGTATGCCTCAG 57.398 50.000 0.00 0.00 0.00 3.35
2204 3274 2.224281 GGATGATCAACGGTATGCCTCA 60.224 50.000 0.00 0.00 0.00 3.86
2205 3275 2.417719 GGATGATCAACGGTATGCCTC 58.582 52.381 0.00 0.00 0.00 4.70
2206 3276 1.270305 CGGATGATCAACGGTATGCCT 60.270 52.381 13.52 0.00 0.00 4.75
2207 3277 1.148310 CGGATGATCAACGGTATGCC 58.852 55.000 13.52 0.00 0.00 4.40
2208 3278 2.061773 CTCGGATGATCAACGGTATGC 58.938 52.381 19.03 0.00 0.00 3.14
2209 3279 2.296190 TCCTCGGATGATCAACGGTATG 59.704 50.000 19.03 9.75 0.00 2.39
2210 3280 2.296471 GTCCTCGGATGATCAACGGTAT 59.704 50.000 19.03 0.00 0.00 2.73
2211 3281 1.679680 GTCCTCGGATGATCAACGGTA 59.320 52.381 19.03 4.48 0.00 4.02
2212 3282 0.460311 GTCCTCGGATGATCAACGGT 59.540 55.000 19.03 0.00 0.00 4.83
2213 3283 0.249489 GGTCCTCGGATGATCAACGG 60.249 60.000 19.03 12.48 0.00 4.44
2214 3284 0.459899 TGGTCCTCGGATGATCAACG 59.540 55.000 14.78 14.78 0.00 4.10
2215 3285 2.555199 CTTGGTCCTCGGATGATCAAC 58.445 52.381 0.00 0.00 0.00 3.18
2216 3286 1.134401 GCTTGGTCCTCGGATGATCAA 60.134 52.381 0.00 8.40 0.00 2.57
2217 3287 0.465705 GCTTGGTCCTCGGATGATCA 59.534 55.000 0.00 0.00 0.00 2.92
2218 3288 0.465705 TGCTTGGTCCTCGGATGATC 59.534 55.000 0.00 0.00 0.00 2.92
2219 3289 0.911769 TTGCTTGGTCCTCGGATGAT 59.088 50.000 0.00 0.00 0.00 2.45
2220 3290 0.911769 ATTGCTTGGTCCTCGGATGA 59.088 50.000 0.00 0.00 0.00 2.92
2221 3291 1.303309 GATTGCTTGGTCCTCGGATG 58.697 55.000 0.00 0.00 0.00 3.51
2222 3292 0.911769 TGATTGCTTGGTCCTCGGAT 59.088 50.000 0.00 0.00 0.00 4.18
2223 3293 0.036388 GTGATTGCTTGGTCCTCGGA 60.036 55.000 0.00 0.00 0.00 4.55
2224 3294 0.321564 TGTGATTGCTTGGTCCTCGG 60.322 55.000 0.00 0.00 0.00 4.63
2225 3295 0.798776 GTGTGATTGCTTGGTCCTCG 59.201 55.000 0.00 0.00 0.00 4.63
2226 3296 0.798776 CGTGTGATTGCTTGGTCCTC 59.201 55.000 0.00 0.00 0.00 3.71
2227 3297 0.396435 TCGTGTGATTGCTTGGTCCT 59.604 50.000 0.00 0.00 0.00 3.85
2228 3298 0.798776 CTCGTGTGATTGCTTGGTCC 59.201 55.000 0.00 0.00 0.00 4.46
2229 3299 1.461127 GTCTCGTGTGATTGCTTGGTC 59.539 52.381 0.00 0.00 0.00 4.02
2230 3300 1.202639 TGTCTCGTGTGATTGCTTGGT 60.203 47.619 0.00 0.00 0.00 3.67
2231 3301 1.195448 GTGTCTCGTGTGATTGCTTGG 59.805 52.381 0.00 0.00 0.00 3.61
2232 3302 1.136529 CGTGTCTCGTGTGATTGCTTG 60.137 52.381 0.00 0.00 34.52 4.01
2233 3303 1.139989 CGTGTCTCGTGTGATTGCTT 58.860 50.000 0.00 0.00 34.52 3.91
2234 3304 0.313987 TCGTGTCTCGTGTGATTGCT 59.686 50.000 0.00 0.00 40.80 3.91
2235 3305 0.435008 GTCGTGTCTCGTGTGATTGC 59.565 55.000 0.00 0.00 40.80 3.56
2236 3306 1.766069 TGTCGTGTCTCGTGTGATTG 58.234 50.000 0.00 0.00 40.80 2.67
2237 3307 2.030274 TGATGTCGTGTCTCGTGTGATT 60.030 45.455 0.00 0.00 40.80 2.57
2238 3308 1.539827 TGATGTCGTGTCTCGTGTGAT 59.460 47.619 0.00 0.00 40.80 3.06
2239 3309 0.948678 TGATGTCGTGTCTCGTGTGA 59.051 50.000 0.00 0.00 40.80 3.58
2240 3310 1.716050 CTTGATGTCGTGTCTCGTGTG 59.284 52.381 0.00 0.00 40.80 3.82
2241 3311 1.607148 TCTTGATGTCGTGTCTCGTGT 59.393 47.619 0.00 0.00 40.80 4.49
2242 3312 2.331809 TCTTGATGTCGTGTCTCGTG 57.668 50.000 0.00 0.00 40.80 4.35
2243 3313 3.577649 AATCTTGATGTCGTGTCTCGT 57.422 42.857 0.00 0.00 40.80 4.18
2244 3314 3.675225 ACAAATCTTGATGTCGTGTCTCG 59.325 43.478 0.00 0.00 41.41 4.04
2245 3315 5.597813 AACAAATCTTGATGTCGTGTCTC 57.402 39.130 0.00 0.00 0.00 3.36
2246 3316 6.346598 CGTTAACAAATCTTGATGTCGTGTCT 60.347 38.462 6.39 0.00 0.00 3.41
2247 3317 5.783654 CGTTAACAAATCTTGATGTCGTGTC 59.216 40.000 6.39 0.00 0.00 3.67
2248 3318 5.464057 TCGTTAACAAATCTTGATGTCGTGT 59.536 36.000 6.39 0.00 0.00 4.49
2249 3319 5.911421 TCGTTAACAAATCTTGATGTCGTG 58.089 37.500 6.39 0.00 0.00 4.35
2250 3320 5.120208 CCTCGTTAACAAATCTTGATGTCGT 59.880 40.000 6.39 0.00 0.00 4.34
2251 3321 5.120208 ACCTCGTTAACAAATCTTGATGTCG 59.880 40.000 6.39 0.00 0.00 4.35
2252 3322 6.481954 ACCTCGTTAACAAATCTTGATGTC 57.518 37.500 6.39 0.00 0.00 3.06
2253 3323 6.485313 TGAACCTCGTTAACAAATCTTGATGT 59.515 34.615 6.39 0.00 0.00 3.06
2254 3324 6.797033 GTGAACCTCGTTAACAAATCTTGATG 59.203 38.462 6.39 0.00 27.94 3.07
2255 3325 6.072673 GGTGAACCTCGTTAACAAATCTTGAT 60.073 38.462 6.39 0.00 28.88 2.57
2256 3326 5.237779 GGTGAACCTCGTTAACAAATCTTGA 59.762 40.000 6.39 0.00 28.88 3.02
2257 3327 5.449304 GGTGAACCTCGTTAACAAATCTTG 58.551 41.667 6.39 0.00 28.88 3.02
2258 3328 4.212636 CGGTGAACCTCGTTAACAAATCTT 59.787 41.667 6.39 0.00 28.88 2.40
2259 3329 3.744426 CGGTGAACCTCGTTAACAAATCT 59.256 43.478 6.39 0.00 28.88 2.40
2260 3330 3.742369 TCGGTGAACCTCGTTAACAAATC 59.258 43.478 6.39 0.00 28.88 2.17
2261 3331 3.495753 GTCGGTGAACCTCGTTAACAAAT 59.504 43.478 6.39 0.00 28.88 2.32
2262 3332 2.865551 GTCGGTGAACCTCGTTAACAAA 59.134 45.455 6.39 0.00 28.88 2.83
2263 3333 2.159128 TGTCGGTGAACCTCGTTAACAA 60.159 45.455 6.39 0.00 28.88 2.83
2264 3334 1.408340 TGTCGGTGAACCTCGTTAACA 59.592 47.619 6.39 0.00 28.88 2.41
2265 3335 2.138596 TGTCGGTGAACCTCGTTAAC 57.861 50.000 0.00 0.00 0.00 2.01
2266 3336 2.610976 CCATGTCGGTGAACCTCGTTAA 60.611 50.000 0.00 0.00 0.00 2.01
2267 3337 1.067425 CCATGTCGGTGAACCTCGTTA 60.067 52.381 0.00 0.00 0.00 3.18
2268 3338 0.320421 CCATGTCGGTGAACCTCGTT 60.320 55.000 0.00 0.00 0.00 3.85
2269 3339 1.292223 CCATGTCGGTGAACCTCGT 59.708 57.895 0.00 0.00 0.00 4.18
2270 3340 2.100631 GCCATGTCGGTGAACCTCG 61.101 63.158 0.00 0.00 36.97 4.63
2271 3341 0.535335 TAGCCATGTCGGTGAACCTC 59.465 55.000 0.00 0.00 36.97 3.85
2272 3342 0.249398 GTAGCCATGTCGGTGAACCT 59.751 55.000 0.00 0.00 36.97 3.50
2273 3343 0.036765 TGTAGCCATGTCGGTGAACC 60.037 55.000 0.00 0.00 36.97 3.62
2274 3344 1.933853 GATGTAGCCATGTCGGTGAAC 59.066 52.381 0.00 0.00 36.97 3.18
2275 3345 1.134521 GGATGTAGCCATGTCGGTGAA 60.135 52.381 0.00 0.00 36.97 3.18
2276 3346 0.464036 GGATGTAGCCATGTCGGTGA 59.536 55.000 0.00 0.00 36.97 4.02
2277 3347 0.532862 GGGATGTAGCCATGTCGGTG 60.533 60.000 0.00 0.00 36.97 4.94
2278 3348 1.696097 GGGGATGTAGCCATGTCGGT 61.696 60.000 0.00 0.00 36.97 4.69
2279 3349 1.071471 GGGGATGTAGCCATGTCGG 59.929 63.158 0.00 0.00 38.11 4.79
2280 3350 1.300931 CGGGGATGTAGCCATGTCG 60.301 63.158 0.00 0.00 0.00 4.35
2281 3351 1.071471 CCGGGGATGTAGCCATGTC 59.929 63.158 0.00 0.00 0.00 3.06
2282 3352 2.452064 CCCGGGGATGTAGCCATGT 61.452 63.158 14.71 0.00 0.00 3.21
2283 3353 2.431683 CCCGGGGATGTAGCCATG 59.568 66.667 14.71 0.00 0.00 3.66
2284 3354 2.854032 CCCCGGGGATGTAGCCAT 60.854 66.667 38.41 0.00 37.50 4.40
2288 3358 3.560251 CTGGCCCCGGGGATGTAG 61.560 72.222 44.86 27.88 37.50 2.74
2289 3359 4.096816 TCTGGCCCCGGGGATGTA 62.097 66.667 44.86 22.23 37.50 2.29
2292 3362 3.115017 ATAGTCTGGCCCCGGGGAT 62.115 63.158 44.86 23.12 37.50 3.85
2293 3363 3.774336 ATAGTCTGGCCCCGGGGA 61.774 66.667 44.86 23.35 37.50 4.81
2294 3364 3.560251 CATAGTCTGGCCCCGGGG 61.560 72.222 37.09 37.09 38.57 5.73
2295 3365 3.560251 CCATAGTCTGGCCCCGGG 61.560 72.222 15.80 15.80 38.47 5.73
2296 3366 3.560251 CCCATAGTCTGGCCCCGG 61.560 72.222 0.00 0.00 44.46 5.73
2297 3367 4.256180 GCCCATAGTCTGGCCCCG 62.256 72.222 0.00 0.00 44.46 5.73
2298 3368 4.256180 CGCCCATAGTCTGGCCCC 62.256 72.222 0.00 0.00 45.07 5.80
2299 3369 4.937431 GCGCCCATAGTCTGGCCC 62.937 72.222 0.00 0.00 45.07 5.80
2300 3370 3.697439 TTGCGCCCATAGTCTGGCC 62.697 63.158 4.18 0.00 45.07 5.36
2301 3371 2.124736 TTGCGCCCATAGTCTGGC 60.125 61.111 4.18 0.00 44.46 4.85
2302 3372 0.811616 GAGTTGCGCCCATAGTCTGG 60.812 60.000 4.18 0.00 45.51 3.86
2303 3373 0.811616 GGAGTTGCGCCCATAGTCTG 60.812 60.000 4.18 0.00 0.00 3.51
2304 3374 1.522569 GGAGTTGCGCCCATAGTCT 59.477 57.895 4.18 0.00 0.00 3.24
2305 3375 1.523938 GGGAGTTGCGCCCATAGTC 60.524 63.158 4.18 0.00 43.17 2.59
2306 3376 2.590092 GGGAGTTGCGCCCATAGT 59.410 61.111 4.18 0.00 43.17 2.12
2307 3377 2.203209 GGGGAGTTGCGCCCATAG 60.203 66.667 4.18 0.00 45.54 2.23
2308 3378 2.382770 ATGGGGAGTTGCGCCCATA 61.383 57.895 11.31 0.00 45.54 2.74
2309 3379 3.743017 ATGGGGAGTTGCGCCCAT 61.743 61.111 4.18 6.34 45.54 4.00
2310 3380 4.738998 CATGGGGAGTTGCGCCCA 62.739 66.667 4.18 3.62 45.54 5.36
2313 3383 2.359850 TGTCATGGGGAGTTGCGC 60.360 61.111 0.00 0.00 0.00 6.09
2314 3384 2.040544 GGTGTCATGGGGAGTTGCG 61.041 63.158 0.00 0.00 0.00 4.85
2315 3385 2.040544 CGGTGTCATGGGGAGTTGC 61.041 63.158 0.00 0.00 0.00 4.17
2316 3386 2.040544 GCGGTGTCATGGGGAGTTG 61.041 63.158 0.00 0.00 0.00 3.16
2317 3387 0.907704 TAGCGGTGTCATGGGGAGTT 60.908 55.000 0.00 0.00 0.00 3.01
2318 3388 1.305802 TAGCGGTGTCATGGGGAGT 60.306 57.895 0.00 0.00 0.00 3.85
2319 3389 1.144057 GTAGCGGTGTCATGGGGAG 59.856 63.158 0.00 0.00 0.00 4.30
2320 3390 1.195442 TTGTAGCGGTGTCATGGGGA 61.195 55.000 0.00 0.00 0.00 4.81
2321 3391 0.107214 ATTGTAGCGGTGTCATGGGG 60.107 55.000 0.00 0.00 0.00 4.96
2322 3392 2.158957 AGTATTGTAGCGGTGTCATGGG 60.159 50.000 0.00 0.00 0.00 4.00
2323 3393 2.866156 CAGTATTGTAGCGGTGTCATGG 59.134 50.000 0.00 0.00 0.00 3.66
2324 3394 2.285220 GCAGTATTGTAGCGGTGTCATG 59.715 50.000 0.00 0.00 0.00 3.07
2325 3395 2.093711 TGCAGTATTGTAGCGGTGTCAT 60.094 45.455 0.00 0.00 0.00 3.06
2326 3396 1.273886 TGCAGTATTGTAGCGGTGTCA 59.726 47.619 0.00 0.00 0.00 3.58
2327 3397 1.659098 GTGCAGTATTGTAGCGGTGTC 59.341 52.381 0.00 0.00 0.00 3.67
2328 3398 1.001520 TGTGCAGTATTGTAGCGGTGT 59.998 47.619 0.00 0.00 0.00 4.16
2329 3399 1.393539 GTGTGCAGTATTGTAGCGGTG 59.606 52.381 0.00 0.00 0.00 4.94
2330 3400 1.674817 GGTGTGCAGTATTGTAGCGGT 60.675 52.381 0.00 0.00 0.00 5.68
2331 3401 1.006832 GGTGTGCAGTATTGTAGCGG 58.993 55.000 0.00 0.00 0.00 5.52
2332 3402 0.645355 CGGTGTGCAGTATTGTAGCG 59.355 55.000 0.00 0.00 0.00 4.26
2333 3403 1.006832 CCGGTGTGCAGTATTGTAGC 58.993 55.000 0.00 0.00 0.00 3.58
2334 3404 1.006832 GCCGGTGTGCAGTATTGTAG 58.993 55.000 1.90 0.00 0.00 2.74
2335 3405 0.321996 TGCCGGTGTGCAGTATTGTA 59.678 50.000 1.90 0.00 36.04 2.41
2336 3406 1.072332 TGCCGGTGTGCAGTATTGT 59.928 52.632 1.90 0.00 36.04 2.71
2337 3407 1.501741 GTGCCGGTGTGCAGTATTG 59.498 57.895 1.90 0.00 43.02 1.90
2338 3408 1.674322 GGTGCCGGTGTGCAGTATT 60.674 57.895 1.90 0.00 43.02 1.89
2339 3409 2.046314 GGTGCCGGTGTGCAGTAT 60.046 61.111 1.90 0.00 43.02 2.12
2340 3410 4.323477 GGGTGCCGGTGTGCAGTA 62.323 66.667 1.90 0.00 43.02 2.74
2385 3455 1.361668 AATAGCACAGACGCGCAAGG 61.362 55.000 5.73 0.00 36.85 3.61
2386 3456 1.277326 TAATAGCACAGACGCGCAAG 58.723 50.000 5.73 0.00 36.85 4.01
2387 3457 1.592543 CATAATAGCACAGACGCGCAA 59.407 47.619 5.73 0.00 36.85 4.85
2388 3458 1.208259 CATAATAGCACAGACGCGCA 58.792 50.000 5.73 0.00 36.85 6.09
2389 3459 1.209128 ACATAATAGCACAGACGCGC 58.791 50.000 5.73 0.00 36.85 6.86
2390 3460 2.033747 CCAACATAATAGCACAGACGCG 60.034 50.000 3.53 3.53 36.85 6.01
2391 3461 2.286418 GCCAACATAATAGCACAGACGC 60.286 50.000 0.00 0.00 0.00 5.19
2392 3462 2.935849 TGCCAACATAATAGCACAGACG 59.064 45.455 0.00 0.00 0.00 4.18
2393 3463 5.991606 TCTATGCCAACATAATAGCACAGAC 59.008 40.000 0.00 0.00 34.06 3.51
2394 3464 6.173427 TCTATGCCAACATAATAGCACAGA 57.827 37.500 0.00 0.00 36.49 3.41
2395 3465 7.444629 AATCTATGCCAACATAATAGCACAG 57.555 36.000 0.00 0.00 38.29 3.66
2402 3472 9.890629 ACACGATATAATCTATGCCAACATAAT 57.109 29.630 0.00 0.00 38.29 1.28
2403 3473 9.150348 CACACGATATAATCTATGCCAACATAA 57.850 33.333 0.00 0.00 38.29 1.90
2404 3474 8.311109 ACACACGATATAATCTATGCCAACATA 58.689 33.333 0.00 0.00 37.74 2.29
2405 3475 7.161404 ACACACGATATAATCTATGCCAACAT 58.839 34.615 0.00 0.00 40.49 2.71
2406 3476 6.521162 ACACACGATATAATCTATGCCAACA 58.479 36.000 0.00 0.00 0.00 3.33
2407 3477 6.868864 AGACACACGATATAATCTATGCCAAC 59.131 38.462 0.00 0.00 0.00 3.77
2408 3478 6.993079 AGACACACGATATAATCTATGCCAA 58.007 36.000 0.00 0.00 0.00 4.52
2409 3479 6.590234 AGACACACGATATAATCTATGCCA 57.410 37.500 0.00 0.00 0.00 4.92
2410 3480 6.973474 GGTAGACACACGATATAATCTATGCC 59.027 42.308 0.00 0.00 0.00 4.40
2411 3481 6.973474 GGGTAGACACACGATATAATCTATGC 59.027 42.308 0.00 0.00 0.00 3.14
2412 3482 7.416438 GGGGGTAGACACACGATATAATCTATG 60.416 44.444 0.00 0.00 0.00 2.23
2413 3483 6.606395 GGGGGTAGACACACGATATAATCTAT 59.394 42.308 0.00 0.00 0.00 1.98
2414 3484 5.948162 GGGGGTAGACACACGATATAATCTA 59.052 44.000 0.00 0.00 0.00 1.98
2415 3485 4.771054 GGGGGTAGACACACGATATAATCT 59.229 45.833 0.00 0.00 0.00 2.40
2416 3486 4.380233 CGGGGGTAGACACACGATATAATC 60.380 50.000 0.00 0.00 0.00 1.75
2417 3487 3.508793 CGGGGGTAGACACACGATATAAT 59.491 47.826 0.00 0.00 0.00 1.28
2418 3488 2.886523 CGGGGGTAGACACACGATATAA 59.113 50.000 0.00 0.00 0.00 0.98
2419 3489 2.507484 CGGGGGTAGACACACGATATA 58.493 52.381 0.00 0.00 0.00 0.86
2420 3490 1.325355 CGGGGGTAGACACACGATAT 58.675 55.000 0.00 0.00 0.00 1.63
2421 3491 1.386525 GCGGGGGTAGACACACGATA 61.387 60.000 11.49 0.00 0.00 2.92
2422 3492 2.718073 GCGGGGGTAGACACACGAT 61.718 63.158 11.49 0.00 0.00 3.73
2423 3493 2.482796 TAGCGGGGGTAGACACACGA 62.483 60.000 11.49 0.00 0.00 4.35
2424 3494 1.389609 ATAGCGGGGGTAGACACACG 61.390 60.000 1.20 1.20 0.00 4.49
2425 3495 1.696063 TATAGCGGGGGTAGACACAC 58.304 55.000 0.00 0.00 0.00 3.82
2426 3496 2.688902 ATATAGCGGGGGTAGACACA 57.311 50.000 0.00 0.00 0.00 3.72
2427 3497 4.275810 TCATATATAGCGGGGGTAGACAC 58.724 47.826 0.00 0.00 0.00 3.67
2428 3498 4.228895 TCTCATATATAGCGGGGGTAGACA 59.771 45.833 0.00 0.00 0.00 3.41
2429 3499 4.789807 TCTCATATATAGCGGGGGTAGAC 58.210 47.826 0.00 0.00 0.00 2.59
2430 3500 4.141228 CCTCTCATATATAGCGGGGGTAGA 60.141 50.000 0.00 0.00 0.00 2.59
2431 3501 4.145807 CCTCTCATATATAGCGGGGGTAG 58.854 52.174 0.00 0.00 0.00 3.18
2432 3502 3.690438 GCCTCTCATATATAGCGGGGGTA 60.690 52.174 0.00 0.00 0.00 3.69
2433 3503 2.955461 GCCTCTCATATATAGCGGGGGT 60.955 54.545 0.00 0.00 0.00 4.95
2434 3504 1.689273 GCCTCTCATATATAGCGGGGG 59.311 57.143 0.00 0.00 0.00 5.40
2435 3505 1.689273 GGCCTCTCATATATAGCGGGG 59.311 57.143 0.00 0.00 0.00 5.73
2436 3506 2.672098 AGGCCTCTCATATATAGCGGG 58.328 52.381 0.00 0.00 0.00 6.13
2437 3507 3.823873 CCTAGGCCTCTCATATATAGCGG 59.176 52.174 9.68 0.00 0.00 5.52
2438 3508 4.720046 TCCTAGGCCTCTCATATATAGCG 58.280 47.826 9.68 0.00 0.00 4.26
2439 3509 7.235079 TGTATCCTAGGCCTCTCATATATAGC 58.765 42.308 9.68 0.00 0.00 2.97
2440 3510 9.295825 CTTGTATCCTAGGCCTCTCATATATAG 57.704 40.741 9.68 0.00 0.00 1.31
2441 3511 8.792734 ACTTGTATCCTAGGCCTCTCATATATA 58.207 37.037 9.68 0.00 0.00 0.86
2442 3512 7.563188 CACTTGTATCCTAGGCCTCTCATATAT 59.437 40.741 9.68 0.00 0.00 0.86
2443 3513 6.892456 CACTTGTATCCTAGGCCTCTCATATA 59.108 42.308 9.68 0.00 0.00 0.86
2444 3514 5.719085 CACTTGTATCCTAGGCCTCTCATAT 59.281 44.000 9.68 0.00 0.00 1.78
2445 3515 5.080337 CACTTGTATCCTAGGCCTCTCATA 58.920 45.833 9.68 0.19 0.00 2.15
2446 3516 3.900601 CACTTGTATCCTAGGCCTCTCAT 59.099 47.826 9.68 1.34 0.00 2.90
2447 3517 3.300388 CACTTGTATCCTAGGCCTCTCA 58.700 50.000 9.68 0.00 0.00 3.27
2448 3518 3.301274 ACACTTGTATCCTAGGCCTCTC 58.699 50.000 9.68 0.00 0.00 3.20
2449 3519 3.301274 GACACTTGTATCCTAGGCCTCT 58.699 50.000 9.68 0.00 0.00 3.69
2450 3520 2.365941 GGACACTTGTATCCTAGGCCTC 59.634 54.545 9.68 0.00 31.75 4.70
2451 3521 2.022918 AGGACACTTGTATCCTAGGCCT 60.023 50.000 11.78 11.78 43.85 5.19
2452 3522 2.399580 AGGACACTTGTATCCTAGGCC 58.600 52.381 2.96 0.00 43.85 5.19
2453 3523 4.216708 AGTAGGACACTTGTATCCTAGGC 58.783 47.826 7.95 0.00 46.10 3.93
2454 3524 6.005198 CCTAGTAGGACACTTGTATCCTAGG 58.995 48.000 11.09 0.82 46.10 3.02
2455 3525 6.839454 TCCTAGTAGGACACTTGTATCCTAG 58.161 44.000 15.33 0.00 46.10 3.02
2456 3526 6.836714 TCCTAGTAGGACACTTGTATCCTA 57.163 41.667 15.33 3.88 43.85 2.94
2469 3539 1.911357 TGGAGTCGTGTCCTAGTAGGA 59.089 52.381 15.33 15.33 43.43 2.94
2470 3540 2.414994 TGGAGTCGTGTCCTAGTAGG 57.585 55.000 10.24 10.24 37.52 3.18
2471 3541 4.696402 GGATATGGAGTCGTGTCCTAGTAG 59.304 50.000 7.24 0.00 37.26 2.57
2472 3542 4.506271 GGGATATGGAGTCGTGTCCTAGTA 60.506 50.000 8.97 0.24 39.34 1.82
2473 3543 3.488363 GGATATGGAGTCGTGTCCTAGT 58.512 50.000 7.24 0.00 37.26 2.57
2474 3544 2.820787 GGGATATGGAGTCGTGTCCTAG 59.179 54.545 8.97 0.00 39.34 3.02
2475 3545 2.176148 TGGGATATGGAGTCGTGTCCTA 59.824 50.000 8.97 2.21 39.34 2.94
2476 3546 1.063190 TGGGATATGGAGTCGTGTCCT 60.063 52.381 8.97 0.00 39.34 3.85
2477 3547 1.410004 TGGGATATGGAGTCGTGTCC 58.590 55.000 2.49 2.49 38.86 4.02
2478 3548 2.365617 ACATGGGATATGGAGTCGTGTC 59.634 50.000 0.00 0.00 0.00 3.67
2479 3549 2.398588 ACATGGGATATGGAGTCGTGT 58.601 47.619 0.00 0.00 0.00 4.49
2480 3550 4.600692 TTACATGGGATATGGAGTCGTG 57.399 45.455 0.00 0.00 0.00 4.35
2481 3551 4.407621 TGTTTACATGGGATATGGAGTCGT 59.592 41.667 0.00 0.00 0.00 4.34
2482 3552 4.750098 GTGTTTACATGGGATATGGAGTCG 59.250 45.833 0.00 0.00 0.00 4.18
2483 3553 5.680619 TGTGTTTACATGGGATATGGAGTC 58.319 41.667 0.00 0.00 0.00 3.36
2484 3554 5.708736 TGTGTTTACATGGGATATGGAGT 57.291 39.130 0.00 0.00 0.00 3.85
2485 3555 7.719193 TGTATTGTGTTTACATGGGATATGGAG 59.281 37.037 0.00 0.00 36.53 3.86
2486 3556 7.578203 TGTATTGTGTTTACATGGGATATGGA 58.422 34.615 0.00 0.00 36.53 3.41
2487 3557 7.815840 TGTATTGTGTTTACATGGGATATGG 57.184 36.000 0.00 0.00 36.53 2.74
2488 3558 8.902806 AGTTGTATTGTGTTTACATGGGATATG 58.097 33.333 0.00 0.00 36.53 1.78
2490 3560 9.386010 GTAGTTGTATTGTGTTTACATGGGATA 57.614 33.333 0.00 0.00 36.53 2.59
2491 3561 7.885922 TGTAGTTGTATTGTGTTTACATGGGAT 59.114 33.333 0.00 0.00 36.53 3.85
2492 3562 7.225011 TGTAGTTGTATTGTGTTTACATGGGA 58.775 34.615 0.00 0.00 36.53 4.37
2493 3563 7.441890 TGTAGTTGTATTGTGTTTACATGGG 57.558 36.000 0.00 0.00 36.53 4.00
2494 3564 8.564574 ACTTGTAGTTGTATTGTGTTTACATGG 58.435 33.333 0.00 0.00 36.53 3.66
2495 3565 9.594038 GACTTGTAGTTGTATTGTGTTTACATG 57.406 33.333 0.00 0.00 36.53 3.21
2496 3566 8.780249 GGACTTGTAGTTGTATTGTGTTTACAT 58.220 33.333 0.00 0.00 36.53 2.29
2497 3567 7.769507 TGGACTTGTAGTTGTATTGTGTTTACA 59.230 33.333 0.00 0.00 34.31 2.41
2498 3568 8.145316 TGGACTTGTAGTTGTATTGTGTTTAC 57.855 34.615 0.00 0.00 0.00 2.01
2499 3569 8.734218 TTGGACTTGTAGTTGTATTGTGTTTA 57.266 30.769 0.00 0.00 0.00 2.01
2500 3570 7.633193 TTGGACTTGTAGTTGTATTGTGTTT 57.367 32.000 0.00 0.00 0.00 2.83
2501 3571 7.817418 ATTGGACTTGTAGTTGTATTGTGTT 57.183 32.000 0.00 0.00 0.00 3.32
2502 3572 7.284489 ACAATTGGACTTGTAGTTGTATTGTGT 59.716 33.333 10.83 0.00 37.58 3.72
2503 3573 7.648142 ACAATTGGACTTGTAGTTGTATTGTG 58.352 34.615 10.83 0.00 37.58 3.33
2504 3574 7.817418 ACAATTGGACTTGTAGTTGTATTGT 57.183 32.000 10.83 0.00 37.58 2.71
2505 3575 9.607285 GTTACAATTGGACTTGTAGTTGTATTG 57.393 33.333 10.83 0.00 41.32 1.90
2506 3576 8.789762 GGTTACAATTGGACTTGTAGTTGTATT 58.210 33.333 10.83 0.00 41.32 1.89
2507 3577 8.161425 AGGTTACAATTGGACTTGTAGTTGTAT 58.839 33.333 10.83 0.00 41.32 2.29
2508 3578 7.511268 AGGTTACAATTGGACTTGTAGTTGTA 58.489 34.615 10.83 0.00 41.32 2.41
2509 3579 6.362248 AGGTTACAATTGGACTTGTAGTTGT 58.638 36.000 10.83 0.00 41.32 3.32
2510 3580 6.877611 AGGTTACAATTGGACTTGTAGTTG 57.122 37.500 10.83 0.00 41.32 3.16
2511 3581 6.938596 GGTAGGTTACAATTGGACTTGTAGTT 59.061 38.462 10.83 0.00 41.32 2.24
2512 3582 6.271624 AGGTAGGTTACAATTGGACTTGTAGT 59.728 38.462 10.83 0.00 41.32 2.73
2513 3583 6.708285 AGGTAGGTTACAATTGGACTTGTAG 58.292 40.000 10.83 0.00 41.32 2.74
2514 3584 6.691255 AGGTAGGTTACAATTGGACTTGTA 57.309 37.500 10.83 0.00 39.88 2.41
2515 3585 5.578157 AGGTAGGTTACAATTGGACTTGT 57.422 39.130 10.83 0.00 41.95 3.16
2516 3586 5.768164 ACAAGGTAGGTTACAATTGGACTTG 59.232 40.000 10.83 11.88 37.99 3.16
2517 3587 5.948842 ACAAGGTAGGTTACAATTGGACTT 58.051 37.500 10.83 7.18 33.66 3.01
2518 3588 5.578157 ACAAGGTAGGTTACAATTGGACT 57.422 39.130 10.83 4.72 33.66 3.85
2519 3589 6.148315 GTGTACAAGGTAGGTTACAATTGGAC 59.852 42.308 10.83 7.95 39.38 4.02
2520 3590 6.183361 TGTGTACAAGGTAGGTTACAATTGGA 60.183 38.462 10.83 0.00 33.66 3.53
2521 3591 5.998981 TGTGTACAAGGTAGGTTACAATTGG 59.001 40.000 10.83 0.00 33.66 3.16
2522 3592 7.499321 TTGTGTACAAGGTAGGTTACAATTG 57.501 36.000 3.24 3.24 34.79 2.32
2523 3593 9.969001 ATATTGTGTACAAGGTAGGTTACAATT 57.031 29.630 0.00 0.00 39.47 2.32
2524 3594 9.969001 AATATTGTGTACAAGGTAGGTTACAAT 57.031 29.630 0.00 0.00 39.47 2.71
2525 3595 9.439500 GAATATTGTGTACAAGGTAGGTTACAA 57.561 33.333 0.00 0.00 39.47 2.41
2526 3596 7.760794 CGAATATTGTGTACAAGGTAGGTTACA 59.239 37.037 0.00 0.00 39.47 2.41
2527 3597 7.975616 TCGAATATTGTGTACAAGGTAGGTTAC 59.024 37.037 0.00 0.00 39.47 2.50
2528 3598 7.975616 GTCGAATATTGTGTACAAGGTAGGTTA 59.024 37.037 0.00 0.00 39.47 2.85
2529 3599 6.815142 GTCGAATATTGTGTACAAGGTAGGTT 59.185 38.462 0.00 0.00 39.47 3.50
2530 3600 6.071221 TGTCGAATATTGTGTACAAGGTAGGT 60.071 38.462 0.00 0.00 39.47 3.08
2531 3601 6.255020 GTGTCGAATATTGTGTACAAGGTAGG 59.745 42.308 0.00 0.00 39.47 3.18
2532 3602 6.809689 TGTGTCGAATATTGTGTACAAGGTAG 59.190 38.462 0.00 0.00 39.47 3.18
2533 3603 6.689554 TGTGTCGAATATTGTGTACAAGGTA 58.310 36.000 0.00 0.00 39.47 3.08
2534 3604 5.543714 TGTGTCGAATATTGTGTACAAGGT 58.456 37.500 0.00 0.00 39.47 3.50
2535 3605 6.147164 AGTTGTGTCGAATATTGTGTACAAGG 59.853 38.462 0.00 0.00 39.47 3.61
2536 3606 7.116376 AGAGTTGTGTCGAATATTGTGTACAAG 59.884 37.037 0.00 0.00 39.47 3.16
2537 3607 6.926826 AGAGTTGTGTCGAATATTGTGTACAA 59.073 34.615 0.00 0.00 40.51 2.41
2538 3608 6.452242 AGAGTTGTGTCGAATATTGTGTACA 58.548 36.000 0.00 0.00 0.00 2.90
2539 3609 6.946229 AGAGTTGTGTCGAATATTGTGTAC 57.054 37.500 0.00 0.00 0.00 2.90
2540 3610 8.083462 TGTTAGAGTTGTGTCGAATATTGTGTA 58.917 33.333 0.00 0.00 0.00 2.90
2541 3611 6.926826 TGTTAGAGTTGTGTCGAATATTGTGT 59.073 34.615 0.00 0.00 0.00 3.72
2542 3612 7.346208 TGTTAGAGTTGTGTCGAATATTGTG 57.654 36.000 0.00 0.00 0.00 3.33
2543 3613 7.439955 TGTTGTTAGAGTTGTGTCGAATATTGT 59.560 33.333 0.00 0.00 0.00 2.71
2544 3614 7.792925 TGTTGTTAGAGTTGTGTCGAATATTG 58.207 34.615 0.00 0.00 0.00 1.90
2545 3615 7.956420 TGTTGTTAGAGTTGTGTCGAATATT 57.044 32.000 0.00 0.00 0.00 1.28
2546 3616 7.413000 GCATGTTGTTAGAGTTGTGTCGAATAT 60.413 37.037 0.00 0.00 0.00 1.28
2547 3617 6.128661 GCATGTTGTTAGAGTTGTGTCGAATA 60.129 38.462 0.00 0.00 0.00 1.75
2548 3618 5.334105 GCATGTTGTTAGAGTTGTGTCGAAT 60.334 40.000 0.00 0.00 0.00 3.34
2549 3619 4.025229 GCATGTTGTTAGAGTTGTGTCGAA 60.025 41.667 0.00 0.00 0.00 3.71
2550 3620 3.493129 GCATGTTGTTAGAGTTGTGTCGA 59.507 43.478 0.00 0.00 0.00 4.20
2551 3621 3.363970 GGCATGTTGTTAGAGTTGTGTCG 60.364 47.826 0.00 0.00 0.00 4.35
2552 3622 3.815401 AGGCATGTTGTTAGAGTTGTGTC 59.185 43.478 0.00 0.00 0.00 3.67
2553 3623 3.820557 AGGCATGTTGTTAGAGTTGTGT 58.179 40.909 0.00 0.00 0.00 3.72
2554 3624 6.500684 AATAGGCATGTTGTTAGAGTTGTG 57.499 37.500 0.00 0.00 0.00 3.33
2555 3625 9.899661 TTATAATAGGCATGTTGTTAGAGTTGT 57.100 29.630 0.00 0.00 0.00 3.32
2557 3627 9.338622 GGTTATAATAGGCATGTTGTTAGAGTT 57.661 33.333 0.00 0.00 0.00 3.01
2558 3628 8.491134 TGGTTATAATAGGCATGTTGTTAGAGT 58.509 33.333 0.00 0.00 0.00 3.24
2559 3629 8.902540 TGGTTATAATAGGCATGTTGTTAGAG 57.097 34.615 0.00 0.00 0.00 2.43
2560 3630 9.860650 ATTGGTTATAATAGGCATGTTGTTAGA 57.139 29.630 0.00 0.00 0.00 2.10
2568 3638 9.927668 CCCTTAAAATTGGTTATAATAGGCATG 57.072 33.333 0.00 0.00 0.00 4.06
2569 3639 9.669024 ACCCTTAAAATTGGTTATAATAGGCAT 57.331 29.630 0.00 0.00 0.00 4.40
2570 3640 9.495382 AACCCTTAAAATTGGTTATAATAGGCA 57.505 29.630 0.00 0.00 40.49 4.75
2571 3641 9.758651 CAACCCTTAAAATTGGTTATAATAGGC 57.241 33.333 0.00 0.00 40.31 3.93
2612 3682 9.030301 GTTGCAGTATTTTTGTGTTCATAAAGT 57.970 29.630 0.00 0.00 30.70 2.66
2613 3683 9.029243 TGTTGCAGTATTTTTGTGTTCATAAAG 57.971 29.630 0.00 0.00 30.70 1.85
2614 3684 8.932945 TGTTGCAGTATTTTTGTGTTCATAAA 57.067 26.923 0.00 0.00 0.00 1.40
2615 3685 8.932945 TTGTTGCAGTATTTTTGTGTTCATAA 57.067 26.923 0.00 0.00 0.00 1.90
2616 3686 8.409371 TCTTGTTGCAGTATTTTTGTGTTCATA 58.591 29.630 0.00 0.00 0.00 2.15
2617 3687 7.264221 TCTTGTTGCAGTATTTTTGTGTTCAT 58.736 30.769 0.00 0.00 0.00 2.57
2618 3688 6.625362 TCTTGTTGCAGTATTTTTGTGTTCA 58.375 32.000 0.00 0.00 0.00 3.18
2625 3695 4.935352 TGCCTCTTGTTGCAGTATTTTT 57.065 36.364 0.00 0.00 32.77 1.94
2655 3725 4.465886 TGGATCGGGAGTTTCTTCAAAAA 58.534 39.130 0.00 0.00 0.00 1.94
2656 3726 4.093472 TGGATCGGGAGTTTCTTCAAAA 57.907 40.909 0.00 0.00 0.00 2.44
2657 3727 3.780804 TGGATCGGGAGTTTCTTCAAA 57.219 42.857 0.00 0.00 0.00 2.69
2658 3728 4.261801 GAATGGATCGGGAGTTTCTTCAA 58.738 43.478 0.00 0.00 0.00 2.69
2659 3729 3.873910 GAATGGATCGGGAGTTTCTTCA 58.126 45.455 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.