Multiple sequence alignment - TraesCS5B01G380100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G380100 chr5B 100.000 2117 0 0 1 2117 558108705 558110821 0.000000e+00 3910
1 TraesCS5B01G380100 chr5B 95.437 789 33 2 1331 2117 94992168 94992955 0.000000e+00 1254
2 TraesCS5B01G380100 chr5B 95.316 790 31 5 1331 2117 521331132 521331918 0.000000e+00 1249
3 TraesCS5B01G380100 chr3B 95.828 791 27 6 19 804 520651773 520652562 0.000000e+00 1273
4 TraesCS5B01G380100 chr3B 95.764 779 30 3 28 804 40643218 40643995 0.000000e+00 1253
5 TraesCS5B01G380100 chr3B 99.375 160 0 1 962 1120 201505484 201505325 2.660000e-74 289
6 TraesCS5B01G380100 chr3B 98.125 160 3 0 805 964 201547710 201547551 1.600000e-71 279
7 TraesCS5B01G380100 chr2B 95.564 789 31 3 1331 2117 647263811 647264597 0.000000e+00 1260
8 TraesCS5B01G380100 chr2B 94.913 806 33 6 1 804 573032002 573031203 0.000000e+00 1254
9 TraesCS5B01G380100 chr2B 95.316 790 33 3 1331 2117 513352030 513351242 0.000000e+00 1251
10 TraesCS5B01G380100 chr7B 95.674 786 24 7 24 804 192953360 192954140 0.000000e+00 1254
11 TraesCS5B01G380100 chr7B 95.311 789 34 2 1331 2117 55829131 55828344 0.000000e+00 1249
12 TraesCS5B01G380100 chr7B 95.519 781 33 2 26 804 525530578 525529798 0.000000e+00 1247
13 TraesCS5B01G380100 chr7B 95.287 785 34 3 20 804 291118835 291118054 0.000000e+00 1242
14 TraesCS5B01G380100 chr6B 95.311 789 34 2 1331 2117 116060140 116060927 0.000000e+00 1249
15 TraesCS5B01G380100 chr4B 95.311 789 34 2 1331 2117 49243020 49242233 0.000000e+00 1249
16 TraesCS5B01G380100 chr4B 95.190 790 35 2 1331 2117 131639100 131638311 0.000000e+00 1245
17 TraesCS5B01G380100 chr4B 95.190 790 34 3 1331 2117 605877795 605878583 0.000000e+00 1245
18 TraesCS5B01G380100 chr4B 95.094 795 30 5 24 811 286250143 286249351 0.000000e+00 1243
19 TraesCS5B01G380100 chr1B 95.513 780 33 2 24 803 115008537 115009314 0.000000e+00 1245
20 TraesCS5B01G380100 chr1B 95.082 793 32 6 14 804 650596787 650597574 0.000000e+00 1242
21 TraesCS5B01G380100 chr1B 100.000 158 0 0 963 1120 142020505 142020662 2.050000e-75 292
22 TraesCS5B01G380100 chrUn 100.000 209 0 0 1121 1329 422173108 422172900 9.160000e-104 387
23 TraesCS5B01G380100 chrUn 99.367 158 1 0 963 1120 405771647 405771804 9.560000e-74 287
24 TraesCS5B01G380100 chrUn 98.125 160 3 0 805 964 392770246 392770405 1.600000e-71 279
25 TraesCS5B01G380100 chr7D 100.000 209 0 0 1121 1329 231571100 231570892 9.160000e-104 387
26 TraesCS5B01G380100 chr7D 98.125 160 3 0 805 964 231569675 231569516 1.600000e-71 279
27 TraesCS5B01G380100 chr5D 100.000 209 0 0 1121 1329 503261102 503260894 9.160000e-104 387
28 TraesCS5B01G380100 chr5D 97.500 160 4 0 805 964 87534581 87534422 7.440000e-70 274
29 TraesCS5B01G380100 chr4D 100.000 209 0 0 1121 1329 322006114 322005906 9.160000e-104 387
30 TraesCS5B01G380100 chr3D 100.000 209 0 0 1121 1329 589259853 589259645 9.160000e-104 387
31 TraesCS5B01G380100 chr3D 99.367 158 1 0 963 1120 21896472 21896315 9.560000e-74 287
32 TraesCS5B01G380100 chr3D 98.125 160 3 0 805 964 589259492 589259333 1.600000e-71 279
33 TraesCS5B01G380100 chr3D 97.500 160 4 0 805 964 581040454 581040613 7.440000e-70 274
34 TraesCS5B01G380100 chr2D 100.000 209 0 0 1121 1329 591988284 591988492 9.160000e-104 387
35 TraesCS5B01G380100 chr2D 100.000 209 0 0 1121 1329 591989348 591989556 9.160000e-104 387
36 TraesCS5B01G380100 chr2D 100.000 158 0 0 963 1120 628284588 628284431 2.050000e-75 292
37 TraesCS5B01G380100 chr2D 98.125 160 3 0 805 964 591989709 591989868 1.600000e-71 279
38 TraesCS5B01G380100 chr1A 100.000 209 0 0 1121 1329 554463917 554464125 9.160000e-104 387
39 TraesCS5B01G380100 chr1A 100.000 209 0 0 1121 1329 575586700 575586908 9.160000e-104 387
40 TraesCS5B01G380100 chr1A 99.367 158 1 0 963 1120 554466118 554466275 9.560000e-74 287
41 TraesCS5B01G380100 chr1A 97.500 160 4 0 805 964 554464278 554464437 7.440000e-70 274
42 TraesCS5B01G380100 chr1D 100.000 158 0 0 963 1120 394177820 394177663 2.050000e-75 292
43 TraesCS5B01G380100 chr1D 99.367 158 1 0 963 1120 254488612 254488455 9.560000e-74 287
44 TraesCS5B01G380100 chr1D 99.367 158 1 0 963 1120 394176767 394176610 9.560000e-74 287
45 TraesCS5B01G380100 chr2A 98.125 160 3 0 805 964 726902419 726902260 1.600000e-71 279


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G380100 chr5B 558108705 558110821 2116 False 3910.0 3910 100.000000 1 2117 1 chr5B.!!$F3 2116
1 TraesCS5B01G380100 chr5B 94992168 94992955 787 False 1254.0 1254 95.437000 1331 2117 1 chr5B.!!$F1 786
2 TraesCS5B01G380100 chr5B 521331132 521331918 786 False 1249.0 1249 95.316000 1331 2117 1 chr5B.!!$F2 786
3 TraesCS5B01G380100 chr3B 520651773 520652562 789 False 1273.0 1273 95.828000 19 804 1 chr3B.!!$F2 785
4 TraesCS5B01G380100 chr3B 40643218 40643995 777 False 1253.0 1253 95.764000 28 804 1 chr3B.!!$F1 776
5 TraesCS5B01G380100 chr2B 647263811 647264597 786 False 1260.0 1260 95.564000 1331 2117 1 chr2B.!!$F1 786
6 TraesCS5B01G380100 chr2B 573031203 573032002 799 True 1254.0 1254 94.913000 1 804 1 chr2B.!!$R2 803
7 TraesCS5B01G380100 chr2B 513351242 513352030 788 True 1251.0 1251 95.316000 1331 2117 1 chr2B.!!$R1 786
8 TraesCS5B01G380100 chr7B 192953360 192954140 780 False 1254.0 1254 95.674000 24 804 1 chr7B.!!$F1 780
9 TraesCS5B01G380100 chr7B 55828344 55829131 787 True 1249.0 1249 95.311000 1331 2117 1 chr7B.!!$R1 786
10 TraesCS5B01G380100 chr7B 525529798 525530578 780 True 1247.0 1247 95.519000 26 804 1 chr7B.!!$R3 778
11 TraesCS5B01G380100 chr7B 291118054 291118835 781 True 1242.0 1242 95.287000 20 804 1 chr7B.!!$R2 784
12 TraesCS5B01G380100 chr6B 116060140 116060927 787 False 1249.0 1249 95.311000 1331 2117 1 chr6B.!!$F1 786
13 TraesCS5B01G380100 chr4B 49242233 49243020 787 True 1249.0 1249 95.311000 1331 2117 1 chr4B.!!$R1 786
14 TraesCS5B01G380100 chr4B 131638311 131639100 789 True 1245.0 1245 95.190000 1331 2117 1 chr4B.!!$R2 786
15 TraesCS5B01G380100 chr4B 605877795 605878583 788 False 1245.0 1245 95.190000 1331 2117 1 chr4B.!!$F1 786
16 TraesCS5B01G380100 chr4B 286249351 286250143 792 True 1243.0 1243 95.094000 24 811 1 chr4B.!!$R3 787
17 TraesCS5B01G380100 chr1B 115008537 115009314 777 False 1245.0 1245 95.513000 24 803 1 chr1B.!!$F1 779
18 TraesCS5B01G380100 chr1B 650596787 650597574 787 False 1242.0 1242 95.082000 14 804 1 chr1B.!!$F3 790
19 TraesCS5B01G380100 chr7D 231569516 231571100 1584 True 333.0 387 99.062500 805 1329 2 chr7D.!!$R1 524
20 TraesCS5B01G380100 chr3D 589259333 589259853 520 True 333.0 387 99.062500 805 1329 2 chr3D.!!$R2 524
21 TraesCS5B01G380100 chr2D 591988284 591989868 1584 False 351.0 387 99.375000 805 1329 3 chr2D.!!$F1 524
22 TraesCS5B01G380100 chr1A 554463917 554466275 2358 False 316.0 387 98.955667 805 1329 3 chr1A.!!$F2 524
23 TraesCS5B01G380100 chr1D 394176610 394177820 1210 True 289.5 292 99.683500 963 1120 2 chr1D.!!$R2 157

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
729 747 0.60864 AAAAGACCATCGCTCGTCCT 59.391 50.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1973 5347 4.042187 TGAGGAAAAGGAAGAGAGGAAAGG 59.958 45.833 0.0 0.0 0.0 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
363 381 6.578163 TGAAAATGAATGCTCAAGTCATGA 57.422 33.333 0.00 0.00 34.49 3.07
521 539 1.134694 GATGCACCGGCGAAGTTTC 59.865 57.895 9.30 0.00 45.35 2.78
729 747 0.608640 AAAAGACCATCGCTCGTCCT 59.391 50.000 0.00 0.00 0.00 3.85
769 787 4.584743 GGAAGACAATCAAAGAAACACCCT 59.415 41.667 0.00 0.00 0.00 4.34
804 822 3.069872 TGTCACACAACGGTTACCATACT 59.930 43.478 1.13 0.00 0.00 2.12
806 824 5.221402 TGTCACACAACGGTTACCATACTTA 60.221 40.000 1.13 0.00 0.00 2.24
807 825 5.695816 GTCACACAACGGTTACCATACTTAA 59.304 40.000 1.13 0.00 0.00 1.85
810 828 5.122711 ACACAACGGTTACCATACTTAATGC 59.877 40.000 1.13 0.00 33.92 3.56
900 1522 4.901785 TGAGAGGACCTTTCCCTAGTAT 57.098 45.455 9.47 0.00 44.10 2.12
1120 4488 8.924511 TTCCAATTACTTCTTCAATTGAGAGT 57.075 30.769 18.86 18.86 42.25 3.24
1121 4489 8.327941 TCCAATTACTTCTTCAATTGAGAGTG 57.672 34.615 21.67 12.37 42.25 3.51
1122 4490 7.939039 TCCAATTACTTCTTCAATTGAGAGTGT 59.061 33.333 21.67 16.01 42.25 3.55
1123 4491 8.019669 CCAATTACTTCTTCAATTGAGAGTGTG 58.980 37.037 21.67 17.43 42.25 3.82
1124 4492 8.562892 CAATTACTTCTTCAATTGAGAGTGTGT 58.437 33.333 21.67 14.27 42.25 3.72
1125 4493 7.715265 TTACTTCTTCAATTGAGAGTGTGTC 57.285 36.000 21.67 0.00 0.00 3.67
1126 4494 5.674525 ACTTCTTCAATTGAGAGTGTGTCA 58.325 37.500 15.93 0.00 0.00 3.58
1127 4495 5.757320 ACTTCTTCAATTGAGAGTGTGTCAG 59.243 40.000 15.93 6.17 0.00 3.51
1128 4496 5.535753 TCTTCAATTGAGAGTGTGTCAGA 57.464 39.130 8.41 2.58 0.00 3.27
1129 4497 5.292765 TCTTCAATTGAGAGTGTGTCAGAC 58.707 41.667 8.41 0.00 0.00 3.51
1130 4498 3.995199 TCAATTGAGAGTGTGTCAGACC 58.005 45.455 3.38 0.00 0.00 3.85
1131 4499 3.070018 CAATTGAGAGTGTGTCAGACCC 58.930 50.000 0.00 0.00 0.00 4.46
1132 4500 0.673985 TTGAGAGTGTGTCAGACCCG 59.326 55.000 0.00 0.00 0.00 5.28
1133 4501 1.080434 GAGAGTGTGTCAGACCCGC 60.080 63.158 0.00 0.00 0.00 6.13
1134 4502 2.430921 GAGTGTGTCAGACCCGCG 60.431 66.667 0.00 0.00 0.00 6.46
1135 4503 3.916392 GAGTGTGTCAGACCCGCGG 62.916 68.421 21.04 21.04 0.00 6.46
1150 4518 3.322466 CGGGCCAAGGGACAGTCT 61.322 66.667 4.39 0.00 27.52 3.24
1151 4519 2.671682 GGGCCAAGGGACAGTCTC 59.328 66.667 4.39 0.00 27.52 3.36
1152 4520 2.224159 GGGCCAAGGGACAGTCTCA 61.224 63.158 4.39 0.00 27.52 3.27
1153 4521 1.298014 GGCCAAGGGACAGTCTCAG 59.702 63.158 2.43 0.00 0.00 3.35
1154 4522 1.298014 GCCAAGGGACAGTCTCAGG 59.702 63.158 2.43 5.38 0.00 3.86
1155 4523 1.484444 GCCAAGGGACAGTCTCAGGT 61.484 60.000 12.24 0.00 0.00 4.00
1156 4524 1.938585 CCAAGGGACAGTCTCAGGTA 58.061 55.000 2.43 0.00 0.00 3.08
1157 4525 1.827969 CCAAGGGACAGTCTCAGGTAG 59.172 57.143 2.43 0.00 0.00 3.18
1158 4526 2.557676 CCAAGGGACAGTCTCAGGTAGA 60.558 54.545 2.43 0.00 0.00 2.59
1171 4539 4.956700 TCTCAGGTAGACAGTTTCTATGGG 59.043 45.833 0.00 0.00 39.13 4.00
1172 4540 4.030913 TCAGGTAGACAGTTTCTATGGGG 58.969 47.826 0.00 0.00 39.13 4.96
1173 4541 2.772515 AGGTAGACAGTTTCTATGGGGC 59.227 50.000 0.00 0.00 39.13 5.80
1174 4542 2.483188 GGTAGACAGTTTCTATGGGGCG 60.483 54.545 0.00 0.00 39.13 6.13
1175 4543 1.276622 AGACAGTTTCTATGGGGCGT 58.723 50.000 0.00 0.00 30.17 5.68
1176 4544 2.463752 AGACAGTTTCTATGGGGCGTA 58.536 47.619 0.00 0.00 30.17 4.42
1177 4545 2.431057 AGACAGTTTCTATGGGGCGTAG 59.569 50.000 0.00 0.00 30.17 3.51
1178 4546 1.485066 ACAGTTTCTATGGGGCGTAGG 59.515 52.381 0.00 0.00 0.00 3.18
1189 4557 3.905249 GCGTAGGCCTCCCAAAAG 58.095 61.111 9.68 0.00 0.00 2.27
1190 4558 1.749258 GCGTAGGCCTCCCAAAAGG 60.749 63.158 9.68 0.00 39.62 3.11
1191 4559 1.683441 CGTAGGCCTCCCAAAAGGT 59.317 57.895 9.68 0.00 38.79 3.50
1192 4560 0.906775 CGTAGGCCTCCCAAAAGGTA 59.093 55.000 9.68 0.00 38.79 3.08
1193 4561 1.279846 CGTAGGCCTCCCAAAAGGTAA 59.720 52.381 9.68 0.00 38.79 2.85
1194 4562 2.719739 GTAGGCCTCCCAAAAGGTAAC 58.280 52.381 9.68 0.00 38.79 2.50
1195 4563 0.037734 AGGCCTCCCAAAAGGTAACG 59.962 55.000 0.00 0.00 46.39 3.18
1196 4564 0.963856 GGCCTCCCAAAAGGTAACGG 60.964 60.000 0.00 0.00 46.39 4.44
1197 4565 0.037160 GCCTCCCAAAAGGTAACGGA 59.963 55.000 0.00 0.00 46.39 4.69
1198 4566 1.949079 GCCTCCCAAAAGGTAACGGAG 60.949 57.143 0.00 0.00 46.39 4.63
1199 4567 2.109425 CTCCCAAAAGGTAACGGAGG 57.891 55.000 0.00 0.00 46.39 4.30
1200 4568 0.037160 TCCCAAAAGGTAACGGAGGC 59.963 55.000 0.00 0.00 46.39 4.70
1201 4569 1.303091 CCCAAAAGGTAACGGAGGCG 61.303 60.000 0.00 0.00 46.39 5.52
1202 4570 0.604511 CCAAAAGGTAACGGAGGCGT 60.605 55.000 0.00 0.00 46.39 5.68
1203 4571 0.515564 CAAAAGGTAACGGAGGCGTG 59.484 55.000 0.00 0.00 46.39 5.34
1204 4572 1.232621 AAAAGGTAACGGAGGCGTGC 61.233 55.000 0.00 0.00 46.39 5.34
1205 4573 2.386064 AAAGGTAACGGAGGCGTGCA 62.386 55.000 0.00 0.00 46.39 4.57
1206 4574 2.357760 GGTAACGGAGGCGTGCAA 60.358 61.111 0.00 0.00 0.00 4.08
1207 4575 1.962306 GGTAACGGAGGCGTGCAAA 60.962 57.895 0.00 0.00 0.00 3.68
1208 4576 1.495951 GTAACGGAGGCGTGCAAAG 59.504 57.895 0.00 0.00 0.00 2.77
1209 4577 1.669760 TAACGGAGGCGTGCAAAGG 60.670 57.895 0.00 0.00 0.00 3.11
1210 4578 2.386064 TAACGGAGGCGTGCAAAGGT 62.386 55.000 0.00 0.00 0.00 3.50
1211 4579 2.978010 CGGAGGCGTGCAAAGGTT 60.978 61.111 0.00 0.00 0.00 3.50
1212 4580 2.551912 CGGAGGCGTGCAAAGGTTT 61.552 57.895 0.00 0.00 0.00 3.27
1213 4581 1.285950 GGAGGCGTGCAAAGGTTTC 59.714 57.895 0.00 0.00 0.00 2.78
1214 4582 1.285950 GAGGCGTGCAAAGGTTTCC 59.714 57.895 0.00 0.00 0.00 3.13
1215 4583 1.152756 AGGCGTGCAAAGGTTTCCT 60.153 52.632 0.00 0.00 33.87 3.36
1216 4584 1.172812 AGGCGTGCAAAGGTTTCCTC 61.173 55.000 0.00 0.00 30.89 3.71
1217 4585 1.082104 GCGTGCAAAGGTTTCCTCG 60.082 57.895 0.00 0.00 30.89 4.63
1218 4586 1.574428 CGTGCAAAGGTTTCCTCGG 59.426 57.895 0.00 0.00 30.89 4.63
1219 4587 1.852067 CGTGCAAAGGTTTCCTCGGG 61.852 60.000 0.00 0.00 30.89 5.14
1220 4588 1.901464 TGCAAAGGTTTCCTCGGGC 60.901 57.895 0.00 0.00 30.89 6.13
1221 4589 2.636412 GCAAAGGTTTCCTCGGGCC 61.636 63.158 0.00 0.00 30.89 5.80
1222 4590 1.228429 CAAAGGTTTCCTCGGGCCA 60.228 57.895 4.39 0.00 30.89 5.36
1223 4591 1.074951 AAAGGTTTCCTCGGGCCAG 59.925 57.895 4.39 0.00 30.89 4.85
1224 4592 1.423794 AAAGGTTTCCTCGGGCCAGA 61.424 55.000 4.39 4.83 30.89 3.86
1225 4593 2.046217 GGTTTCCTCGGGCCAGAC 60.046 66.667 4.39 0.00 0.00 3.51
1226 4594 2.434359 GTTTCCTCGGGCCAGACG 60.434 66.667 4.39 0.00 0.00 4.18
1227 4595 3.702048 TTTCCTCGGGCCAGACGG 61.702 66.667 4.39 10.00 0.00 4.79
1228 4596 4.689549 TTCCTCGGGCCAGACGGA 62.690 66.667 16.22 16.22 0.00 4.69
1231 4599 3.461773 CTCGGGCCAGACGGACAT 61.462 66.667 4.39 0.00 45.55 3.06
1232 4600 3.000819 TCGGGCCAGACGGACATT 61.001 61.111 4.39 0.00 45.55 2.71
1233 4601 2.819595 CGGGCCAGACGGACATTG 60.820 66.667 4.39 0.00 45.55 2.82
1234 4602 2.438434 GGGCCAGACGGACATTGG 60.438 66.667 4.39 0.00 45.55 3.16
1235 4603 2.351276 GGCCAGACGGACATTGGT 59.649 61.111 0.00 0.00 41.77 3.67
1236 4604 1.745489 GGCCAGACGGACATTGGTC 60.745 63.158 0.00 0.00 41.77 4.02
1245 4613 2.755929 GACATTGGTCCTCGAGTGC 58.244 57.895 12.31 3.24 38.12 4.40
1246 4614 0.037326 GACATTGGTCCTCGAGTGCA 60.037 55.000 12.31 0.00 38.12 4.57
1247 4615 0.396435 ACATTGGTCCTCGAGTGCAA 59.604 50.000 12.31 4.41 0.00 4.08
1248 4616 1.202758 ACATTGGTCCTCGAGTGCAAA 60.203 47.619 12.31 3.76 0.00 3.68
1249 4617 1.466167 CATTGGTCCTCGAGTGCAAAG 59.534 52.381 12.31 0.00 0.00 2.77
1250 4618 0.250295 TTGGTCCTCGAGTGCAAAGG 60.250 55.000 12.31 0.00 0.00 3.11
1251 4619 2.035442 GGTCCTCGAGTGCAAAGGC 61.035 63.158 12.31 0.00 41.68 4.35
1261 4629 3.282271 GCAAAGGCAGAAGGGAGC 58.718 61.111 0.00 0.00 40.72 4.70
1262 4630 1.303970 GCAAAGGCAGAAGGGAGCT 60.304 57.895 0.00 0.00 40.72 4.09
1263 4631 0.897401 GCAAAGGCAGAAGGGAGCTT 60.897 55.000 0.00 0.00 40.72 3.74
1264 4632 0.886563 CAAAGGCAGAAGGGAGCTTG 59.113 55.000 0.00 0.00 0.00 4.01
1265 4633 0.773644 AAAGGCAGAAGGGAGCTTGA 59.226 50.000 0.00 0.00 0.00 3.02
1266 4634 0.037447 AAGGCAGAAGGGAGCTTGAC 59.963 55.000 0.00 0.00 0.00 3.18
1267 4635 0.839853 AGGCAGAAGGGAGCTTGACT 60.840 55.000 0.00 0.00 0.00 3.41
1268 4636 0.676151 GGCAGAAGGGAGCTTGACTG 60.676 60.000 0.00 0.00 0.00 3.51
1269 4637 1.304509 GCAGAAGGGAGCTTGACTGC 61.305 60.000 13.30 13.30 42.44 4.40
1270 4638 0.035881 CAGAAGGGAGCTTGACTGCA 59.964 55.000 0.00 0.00 38.79 4.41
1271 4639 0.767375 AGAAGGGAGCTTGACTGCAA 59.233 50.000 0.00 0.00 38.79 4.08
1280 4648 3.706055 TTGACTGCAAGACTCACCC 57.294 52.632 0.00 0.00 37.43 4.61
1281 4649 0.249868 TTGACTGCAAGACTCACCCG 60.250 55.000 0.00 0.00 37.43 5.28
1282 4650 1.367840 GACTGCAAGACTCACCCGT 59.632 57.895 0.00 0.00 37.43 5.28
1283 4651 0.667792 GACTGCAAGACTCACCCGTC 60.668 60.000 0.00 0.00 37.43 4.79
1284 4652 1.734477 CTGCAAGACTCACCCGTCG 60.734 63.158 0.00 0.00 38.90 5.12
1285 4653 2.142357 CTGCAAGACTCACCCGTCGA 62.142 60.000 0.00 0.00 38.90 4.20
1286 4654 1.444553 GCAAGACTCACCCGTCGAG 60.445 63.158 0.00 0.00 38.90 4.04
1287 4655 1.444553 CAAGACTCACCCGTCGAGC 60.445 63.158 0.00 0.00 38.90 5.03
1288 4656 1.901948 AAGACTCACCCGTCGAGCA 60.902 57.895 0.00 0.00 38.90 4.26
1289 4657 1.867919 AAGACTCACCCGTCGAGCAG 61.868 60.000 0.00 0.00 38.90 4.24
1290 4658 2.282251 ACTCACCCGTCGAGCAGA 60.282 61.111 0.00 0.00 33.58 4.26
1291 4659 2.259875 GACTCACCCGTCGAGCAGAG 62.260 65.000 0.00 0.00 33.58 3.35
1292 4660 2.033602 TCACCCGTCGAGCAGAGA 59.966 61.111 0.00 0.00 0.00 3.10
1293 4661 2.179517 CACCCGTCGAGCAGAGAC 59.820 66.667 0.00 0.00 35.41 3.36
1310 4678 3.509388 ACGAAAGTCGGCCTTAGTG 57.491 52.632 0.00 0.00 45.59 2.74
1311 4679 0.963962 ACGAAAGTCGGCCTTAGTGA 59.036 50.000 0.00 0.00 45.59 3.41
1312 4680 1.549170 ACGAAAGTCGGCCTTAGTGAT 59.451 47.619 0.00 0.00 45.59 3.06
1313 4681 2.194271 CGAAAGTCGGCCTTAGTGATC 58.806 52.381 0.00 0.00 36.00 2.92
1314 4682 2.552031 GAAAGTCGGCCTTAGTGATCC 58.448 52.381 0.00 0.00 31.48 3.36
1315 4683 0.460311 AAGTCGGCCTTAGTGATCCG 59.540 55.000 0.00 0.00 42.96 4.18
1317 4685 2.112898 TCGGCCTTAGTGATCCGAC 58.887 57.895 0.00 0.00 44.99 4.79
1318 4686 1.299165 CGGCCTTAGTGATCCGACG 60.299 63.158 0.00 0.00 44.23 5.12
1319 4687 1.067582 GGCCTTAGTGATCCGACGG 59.932 63.158 7.84 7.84 0.00 4.79
1320 4688 1.673808 GGCCTTAGTGATCCGACGGT 61.674 60.000 14.79 0.67 0.00 4.83
1321 4689 0.527817 GCCTTAGTGATCCGACGGTG 60.528 60.000 14.79 0.00 0.00 4.94
1322 4690 0.527817 CCTTAGTGATCCGACGGTGC 60.528 60.000 14.79 7.76 0.00 5.01
1323 4691 0.527817 CTTAGTGATCCGACGGTGCC 60.528 60.000 14.79 4.95 0.00 5.01
1324 4692 2.274232 TTAGTGATCCGACGGTGCCG 62.274 60.000 14.79 9.29 46.03 5.69
1325 4693 4.124351 GTGATCCGACGGTGCCGA 62.124 66.667 18.16 0.00 42.83 5.54
1326 4694 3.822192 TGATCCGACGGTGCCGAG 61.822 66.667 18.16 10.28 42.83 4.63
1327 4695 3.823330 GATCCGACGGTGCCGAGT 61.823 66.667 18.16 0.00 42.83 4.18
1328 4696 4.129737 ATCCGACGGTGCCGAGTG 62.130 66.667 18.16 6.14 42.83 3.51
1340 4708 1.298157 GCCGAGTGTTGCATGCTACA 61.298 55.000 27.45 27.45 0.00 2.74
1369 4737 3.625764 GCAAACCTCAACACAAGTGTCTA 59.374 43.478 6.28 0.00 44.13 2.59
1382 4750 7.168219 ACACAAGTGTCTATACAATCCACAAT 58.832 34.615 0.00 0.00 40.24 2.71
1444 4812 4.560035 CGCAAAACTATTGCAAGGAATCAG 59.440 41.667 4.94 0.00 45.14 2.90
1511 4879 4.759693 TGACTAACCATGTGAATGACCAAC 59.240 41.667 0.00 0.00 0.00 3.77
1606 4977 8.338259 CGCTCTAACAAATATAAGTGAAGCAAT 58.662 33.333 0.00 0.00 0.00 3.56
1775 5147 5.481824 CCAAGGACTATCTCATACCAGCATA 59.518 44.000 0.00 0.00 0.00 3.14
1814 5187 8.419076 AAATGAAAACTAAATGCAAAAGACGT 57.581 26.923 0.00 0.00 0.00 4.34
1890 5263 4.104738 ACTTGTTGAAGAAAGAGGGGATGA 59.895 41.667 0.00 0.00 32.98 2.92
1973 5347 2.421399 GCATCCCCAAGCTTGAGCC 61.421 63.158 28.05 5.96 43.38 4.70
1977 5351 1.228988 CCCCAAGCTTGAGCCCTTT 60.229 57.895 28.05 0.00 43.38 3.11
2109 5483 8.968969 CACCACTCTAAGTACTATAGAAAACCT 58.031 37.037 6.78 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 74 2.203625 GGCCAAAGAAGCCCACCA 60.204 61.111 0.00 0.00 45.16 4.17
363 381 7.309805 CCATGCAACTTCCATCATCATCATATT 60.310 37.037 0.00 0.00 0.00 1.28
521 539 1.649390 CTGACCTCGAGAGTCGGTGG 61.649 65.000 23.86 7.82 40.88 4.61
729 747 1.847328 TCCTTATGAGTGGCAGTCGA 58.153 50.000 17.03 5.31 0.00 4.20
769 787 5.685068 CGTTGTGTGACAAATTTGAAGCATA 59.315 36.000 24.64 13.67 40.15 3.14
804 822 1.635844 CAGCTCACGTACCGCATTAA 58.364 50.000 0.00 0.00 0.00 1.40
806 824 1.447838 CCAGCTCACGTACCGCATT 60.448 57.895 0.00 0.00 0.00 3.56
807 825 2.184322 CCAGCTCACGTACCGCAT 59.816 61.111 0.00 0.00 0.00 4.73
810 828 1.445582 GAACCCAGCTCACGTACCG 60.446 63.158 0.00 0.00 0.00 4.02
850 1472 1.761174 GCCCACACCGGATATGGAT 59.239 57.895 20.43 0.00 36.56 3.41
900 1522 1.305046 GTCCTTCCCGGTCCTCTCA 60.305 63.158 0.00 0.00 0.00 3.27
925 1547 2.613474 GGCACGATAACTGGTACACCAA 60.613 50.000 2.14 0.00 46.97 3.67
1133 4501 3.316573 GAGACTGTCCCTTGGCCCG 62.317 68.421 0.00 0.00 0.00 6.13
1134 4502 2.190488 CTGAGACTGTCCCTTGGCCC 62.190 65.000 0.00 0.00 0.00 5.80
1135 4503 1.298014 CTGAGACTGTCCCTTGGCC 59.702 63.158 3.76 0.00 0.00 5.36
1136 4504 1.298014 CCTGAGACTGTCCCTTGGC 59.702 63.158 3.76 0.00 0.00 4.52
1137 4505 1.827969 CTACCTGAGACTGTCCCTTGG 59.172 57.143 3.76 4.86 0.00 3.61
1138 4506 2.808919 TCTACCTGAGACTGTCCCTTG 58.191 52.381 3.76 0.00 0.00 3.61
1148 4516 4.956700 CCCATAGAAACTGTCTACCTGAGA 59.043 45.833 0.00 0.00 41.75 3.27
1149 4517 4.100189 CCCCATAGAAACTGTCTACCTGAG 59.900 50.000 0.00 0.00 41.75 3.35
1150 4518 4.030913 CCCCATAGAAACTGTCTACCTGA 58.969 47.826 0.00 0.00 41.75 3.86
1151 4519 3.432326 GCCCCATAGAAACTGTCTACCTG 60.432 52.174 0.00 0.00 41.75 4.00
1152 4520 2.772515 GCCCCATAGAAACTGTCTACCT 59.227 50.000 0.00 0.00 41.75 3.08
1153 4521 2.483188 CGCCCCATAGAAACTGTCTACC 60.483 54.545 0.00 0.00 41.75 3.18
1154 4522 2.167900 ACGCCCCATAGAAACTGTCTAC 59.832 50.000 0.00 0.00 41.75 2.59
1155 4523 2.463752 ACGCCCCATAGAAACTGTCTA 58.536 47.619 0.00 0.00 43.14 2.59
1156 4524 1.276622 ACGCCCCATAGAAACTGTCT 58.723 50.000 0.00 0.00 40.71 3.41
1157 4525 2.483188 CCTACGCCCCATAGAAACTGTC 60.483 54.545 0.00 0.00 0.00 3.51
1158 4526 1.485066 CCTACGCCCCATAGAAACTGT 59.515 52.381 0.00 0.00 0.00 3.55
1159 4527 1.810412 GCCTACGCCCCATAGAAACTG 60.810 57.143 0.00 0.00 0.00 3.16
1160 4528 0.468648 GCCTACGCCCCATAGAAACT 59.531 55.000 0.00 0.00 0.00 2.66
1161 4529 3.002277 GCCTACGCCCCATAGAAAC 57.998 57.895 0.00 0.00 0.00 2.78
1172 4540 1.749258 CCTTTTGGGAGGCCTACGC 60.749 63.158 9.48 10.37 37.23 4.42
1173 4541 0.906775 TACCTTTTGGGAGGCCTACG 59.093 55.000 9.48 0.00 46.08 3.51
1174 4542 2.719739 GTTACCTTTTGGGAGGCCTAC 58.280 52.381 6.36 6.36 46.08 3.18
1175 4543 1.279846 CGTTACCTTTTGGGAGGCCTA 59.720 52.381 4.42 0.00 46.08 3.93
1176 4544 0.037734 CGTTACCTTTTGGGAGGCCT 59.962 55.000 3.86 3.86 46.08 5.19
1177 4545 0.963856 CCGTTACCTTTTGGGAGGCC 60.964 60.000 0.00 0.00 46.08 5.19
1178 4546 0.037160 TCCGTTACCTTTTGGGAGGC 59.963 55.000 0.00 0.00 46.08 4.70
1179 4547 2.109425 CTCCGTTACCTTTTGGGAGG 57.891 55.000 0.00 0.00 46.08 4.30
1180 4548 1.949079 GCCTCCGTTACCTTTTGGGAG 60.949 57.143 0.00 0.00 46.08 4.30
1181 4549 0.037160 GCCTCCGTTACCTTTTGGGA 59.963 55.000 0.00 0.00 46.08 4.37
1182 4550 1.303091 CGCCTCCGTTACCTTTTGGG 61.303 60.000 0.00 0.00 46.08 4.12
1194 4562 2.458006 GAAACCTTTGCACGCCTCCG 62.458 60.000 0.00 0.00 41.14 4.63
1195 4563 1.285950 GAAACCTTTGCACGCCTCC 59.714 57.895 0.00 0.00 0.00 4.30
1196 4564 1.172812 AGGAAACCTTTGCACGCCTC 61.173 55.000 0.00 0.00 0.00 4.70
1197 4565 1.152756 AGGAAACCTTTGCACGCCT 60.153 52.632 0.00 0.00 0.00 5.52
1198 4566 1.285950 GAGGAAACCTTTGCACGCC 59.714 57.895 0.00 0.00 31.76 5.68
1199 4567 1.082104 CGAGGAAACCTTTGCACGC 60.082 57.895 0.00 0.00 36.13 5.34
1200 4568 1.574428 CCGAGGAAACCTTTGCACG 59.426 57.895 2.87 2.87 40.83 5.34
1201 4569 1.956802 CCCGAGGAAACCTTTGCAC 59.043 57.895 0.00 0.00 31.76 4.57
1202 4570 1.901464 GCCCGAGGAAACCTTTGCA 60.901 57.895 0.00 0.00 31.76 4.08
1203 4571 2.636412 GGCCCGAGGAAACCTTTGC 61.636 63.158 0.00 0.00 31.76 3.68
1204 4572 1.228429 TGGCCCGAGGAAACCTTTG 60.228 57.895 0.00 0.00 31.76 2.77
1205 4573 1.074951 CTGGCCCGAGGAAACCTTT 59.925 57.895 0.00 0.00 31.76 3.11
1206 4574 1.846124 TCTGGCCCGAGGAAACCTT 60.846 57.895 0.00 0.00 31.76 3.50
1207 4575 2.203938 TCTGGCCCGAGGAAACCT 60.204 61.111 0.00 0.00 36.03 3.50
1208 4576 2.046217 GTCTGGCCCGAGGAAACC 60.046 66.667 0.00 0.00 0.00 3.27
1209 4577 2.434359 CGTCTGGCCCGAGGAAAC 60.434 66.667 11.04 0.00 0.00 2.78
1210 4578 3.702048 CCGTCTGGCCCGAGGAAA 61.702 66.667 17.34 0.00 0.00 3.13
1211 4579 4.689549 TCCGTCTGGCCCGAGGAA 62.690 66.667 17.34 0.00 34.14 3.36
1214 4582 3.019003 AATGTCCGTCTGGCCCGAG 62.019 63.158 0.00 0.00 34.14 4.63
1215 4583 3.000819 AATGTCCGTCTGGCCCGA 61.001 61.111 0.00 0.00 34.14 5.14
1216 4584 2.819595 CAATGTCCGTCTGGCCCG 60.820 66.667 0.00 0.00 34.14 6.13
1217 4585 2.438434 CCAATGTCCGTCTGGCCC 60.438 66.667 0.00 0.00 34.14 5.80
1218 4586 1.745489 GACCAATGTCCGTCTGGCC 60.745 63.158 0.00 0.00 35.34 5.36
1219 4587 3.890674 GACCAATGTCCGTCTGGC 58.109 61.111 0.00 0.00 35.34 4.85
1227 4595 0.037326 TGCACTCGAGGACCAATGTC 60.037 55.000 18.41 2.24 40.98 3.06
1228 4596 0.396435 TTGCACTCGAGGACCAATGT 59.604 50.000 18.41 0.00 0.00 2.71
1229 4597 1.466167 CTTTGCACTCGAGGACCAATG 59.534 52.381 18.41 13.61 0.00 2.82
1230 4598 1.611673 CCTTTGCACTCGAGGACCAAT 60.612 52.381 18.41 0.00 32.11 3.16
1231 4599 0.250295 CCTTTGCACTCGAGGACCAA 60.250 55.000 18.41 13.22 32.11 3.67
1232 4600 1.371183 CCTTTGCACTCGAGGACCA 59.629 57.895 18.41 7.59 32.11 4.02
1233 4601 2.035442 GCCTTTGCACTCGAGGACC 61.035 63.158 18.41 4.85 37.47 4.46
1234 4602 1.294659 CTGCCTTTGCACTCGAGGAC 61.295 60.000 18.41 8.73 44.23 3.85
1235 4603 1.004560 CTGCCTTTGCACTCGAGGA 60.005 57.895 18.41 0.00 44.23 3.71
1236 4604 0.603707 TTCTGCCTTTGCACTCGAGG 60.604 55.000 18.41 6.97 44.23 4.63
1237 4605 0.795085 CTTCTGCCTTTGCACTCGAG 59.205 55.000 11.84 11.84 44.23 4.04
1238 4606 0.603707 CCTTCTGCCTTTGCACTCGA 60.604 55.000 0.00 0.00 44.23 4.04
1239 4607 1.580845 CCCTTCTGCCTTTGCACTCG 61.581 60.000 0.00 0.00 44.23 4.18
1240 4608 0.250901 TCCCTTCTGCCTTTGCACTC 60.251 55.000 0.00 0.00 44.23 3.51
1241 4609 0.251077 CTCCCTTCTGCCTTTGCACT 60.251 55.000 0.00 0.00 44.23 4.40
1242 4610 1.871126 GCTCCCTTCTGCCTTTGCAC 61.871 60.000 0.00 0.00 44.23 4.57
1244 4612 0.897401 AAGCTCCCTTCTGCCTTTGC 60.897 55.000 0.00 0.00 38.26 3.68
1245 4613 0.886563 CAAGCTCCCTTCTGCCTTTG 59.113 55.000 0.00 0.00 0.00 2.77
1246 4614 0.773644 TCAAGCTCCCTTCTGCCTTT 59.226 50.000 0.00 0.00 0.00 3.11
1247 4615 0.037447 GTCAAGCTCCCTTCTGCCTT 59.963 55.000 0.00 0.00 0.00 4.35
1248 4616 0.839853 AGTCAAGCTCCCTTCTGCCT 60.840 55.000 0.00 0.00 0.00 4.75
1249 4617 0.676151 CAGTCAAGCTCCCTTCTGCC 60.676 60.000 0.00 0.00 0.00 4.85
1250 4618 1.304509 GCAGTCAAGCTCCCTTCTGC 61.305 60.000 11.40 11.40 39.89 4.26
1251 4619 0.035881 TGCAGTCAAGCTCCCTTCTG 59.964 55.000 0.00 0.00 34.99 3.02
1252 4620 0.767375 TTGCAGTCAAGCTCCCTTCT 59.233 50.000 0.00 0.00 34.99 2.85
1253 4621 1.163554 CTTGCAGTCAAGCTCCCTTC 58.836 55.000 0.00 0.00 42.66 3.46
1254 4622 3.336122 CTTGCAGTCAAGCTCCCTT 57.664 52.632 0.00 0.00 42.66 3.95
1262 4630 0.249868 CGGGTGAGTCTTGCAGTCAA 60.250 55.000 0.00 0.00 36.13 3.18
1263 4631 1.367471 CGGGTGAGTCTTGCAGTCA 59.633 57.895 0.00 0.00 31.38 3.41
1264 4632 0.667792 GACGGGTGAGTCTTGCAGTC 60.668 60.000 0.00 0.00 38.09 3.51
1265 4633 1.367840 GACGGGTGAGTCTTGCAGT 59.632 57.895 0.00 0.00 38.09 4.40
1266 4634 1.734477 CGACGGGTGAGTCTTGCAG 60.734 63.158 0.00 0.00 38.90 4.41
1267 4635 2.142357 CTCGACGGGTGAGTCTTGCA 62.142 60.000 0.00 0.00 38.90 4.08
1268 4636 1.444553 CTCGACGGGTGAGTCTTGC 60.445 63.158 0.00 0.00 38.90 4.01
1269 4637 1.444553 GCTCGACGGGTGAGTCTTG 60.445 63.158 0.00 0.00 38.90 3.02
1270 4638 1.867919 CTGCTCGACGGGTGAGTCTT 61.868 60.000 0.00 0.00 38.90 3.01
1271 4639 2.282251 TGCTCGACGGGTGAGTCT 60.282 61.111 0.00 0.00 38.90 3.24
1272 4640 2.179517 CTGCTCGACGGGTGAGTC 59.820 66.667 0.00 0.00 35.85 3.36
1273 4641 2.282251 TCTGCTCGACGGGTGAGT 60.282 61.111 0.00 0.00 35.85 3.41
1274 4642 2.041115 TCTCTGCTCGACGGGTGAG 61.041 63.158 11.80 11.80 36.53 3.51
1275 4643 2.033602 TCTCTGCTCGACGGGTGA 59.966 61.111 0.00 0.00 0.00 4.02
1276 4644 2.179517 GTCTCTGCTCGACGGGTG 59.820 66.667 0.00 0.00 0.00 4.61
1281 4649 1.608822 GACTTTCGTCTCTGCTCGAC 58.391 55.000 0.00 0.00 37.19 4.20
1282 4650 0.166161 CGACTTTCGTCTCTGCTCGA 59.834 55.000 0.00 0.00 38.03 4.04
1283 4651 0.794981 CCGACTTTCGTCTCTGCTCG 60.795 60.000 0.00 0.00 38.40 5.03
1284 4652 1.073768 GCCGACTTTCGTCTCTGCTC 61.074 60.000 0.00 0.00 38.40 4.26
1285 4653 1.080434 GCCGACTTTCGTCTCTGCT 60.080 57.895 0.00 0.00 38.40 4.24
1286 4654 2.095252 GGCCGACTTTCGTCTCTGC 61.095 63.158 0.00 0.00 38.40 4.26
1287 4655 0.038159 AAGGCCGACTTTCGTCTCTG 60.038 55.000 0.00 0.00 38.40 3.35
1288 4656 1.473278 CTAAGGCCGACTTTCGTCTCT 59.527 52.381 0.00 0.00 40.64 3.10
1289 4657 1.201880 ACTAAGGCCGACTTTCGTCTC 59.798 52.381 0.00 0.00 40.64 3.36
1290 4658 1.067776 CACTAAGGCCGACTTTCGTCT 60.068 52.381 0.00 0.00 40.64 4.18
1291 4659 1.068055 TCACTAAGGCCGACTTTCGTC 60.068 52.381 0.00 0.00 40.64 4.20
1292 4660 0.963962 TCACTAAGGCCGACTTTCGT 59.036 50.000 0.00 0.00 40.64 3.85
1293 4661 2.194271 GATCACTAAGGCCGACTTTCG 58.806 52.381 0.00 0.00 40.64 3.46
1294 4662 2.552031 GGATCACTAAGGCCGACTTTC 58.448 52.381 0.00 0.00 40.64 2.62
1295 4663 1.134788 CGGATCACTAAGGCCGACTTT 60.135 52.381 0.00 0.00 46.29 2.66
1296 4664 0.460311 CGGATCACTAAGGCCGACTT 59.540 55.000 0.00 0.00 46.29 3.01
1297 4665 0.395311 TCGGATCACTAAGGCCGACT 60.395 55.000 0.00 0.00 46.80 4.18
1298 4666 2.112898 TCGGATCACTAAGGCCGAC 58.887 57.895 0.00 0.00 46.80 4.79
1300 4668 1.299165 CGTCGGATCACTAAGGCCG 60.299 63.158 0.00 0.00 44.83 6.13
1301 4669 1.067582 CCGTCGGATCACTAAGGCC 59.932 63.158 4.91 0.00 0.00 5.19
1302 4670 0.527817 CACCGTCGGATCACTAAGGC 60.528 60.000 20.51 0.00 0.00 4.35
1303 4671 0.527817 GCACCGTCGGATCACTAAGG 60.528 60.000 20.51 0.00 0.00 2.69
1304 4672 0.527817 GGCACCGTCGGATCACTAAG 60.528 60.000 20.51 0.00 0.00 2.18
1305 4673 1.514087 GGCACCGTCGGATCACTAA 59.486 57.895 20.51 0.00 0.00 2.24
1306 4674 2.767445 CGGCACCGTCGGATCACTA 61.767 63.158 20.51 0.00 34.35 2.74
1307 4675 4.129737 CGGCACCGTCGGATCACT 62.130 66.667 20.51 0.00 34.35 3.41
1308 4676 4.124351 TCGGCACCGTCGGATCAC 62.124 66.667 20.51 3.64 40.74 3.06
1309 4677 3.822192 CTCGGCACCGTCGGATCA 61.822 66.667 20.51 0.00 40.74 2.92
1310 4678 3.823330 ACTCGGCACCGTCGGATC 61.823 66.667 20.51 8.63 40.74 3.36
1311 4679 4.129737 CACTCGGCACCGTCGGAT 62.130 66.667 20.51 0.00 40.74 4.18
1313 4681 4.657824 AACACTCGGCACCGTCGG 62.658 66.667 10.48 10.48 40.74 4.79
1314 4682 3.403057 CAACACTCGGCACCGTCG 61.403 66.667 9.23 4.41 40.74 5.12
1315 4683 3.712881 GCAACACTCGGCACCGTC 61.713 66.667 9.23 0.00 40.74 4.79
1316 4684 3.825160 ATGCAACACTCGGCACCGT 62.825 57.895 9.23 0.00 43.75 4.83
1317 4685 3.049674 ATGCAACACTCGGCACCG 61.050 61.111 1.73 1.73 43.75 4.94
1318 4686 2.562912 CATGCAACACTCGGCACC 59.437 61.111 0.00 0.00 43.75 5.01
1319 4687 1.298157 TAGCATGCAACACTCGGCAC 61.298 55.000 21.98 0.00 43.75 5.01
1320 4688 1.003959 TAGCATGCAACACTCGGCA 60.004 52.632 21.98 0.00 45.23 5.69
1321 4689 1.298157 TGTAGCATGCAACACTCGGC 61.298 55.000 21.98 0.00 0.00 5.54
1322 4690 0.723414 CTGTAGCATGCAACACTCGG 59.277 55.000 21.98 4.54 0.00 4.63
1323 4691 0.723414 CCTGTAGCATGCAACACTCG 59.277 55.000 21.98 9.53 0.00 4.18
1324 4692 1.734465 GTCCTGTAGCATGCAACACTC 59.266 52.381 21.98 3.84 0.00 3.51
1325 4693 1.349026 AGTCCTGTAGCATGCAACACT 59.651 47.619 21.98 9.46 0.00 3.55
1326 4694 1.813513 AGTCCTGTAGCATGCAACAC 58.186 50.000 21.98 14.69 0.00 3.32
1327 4695 2.153645 CAAGTCCTGTAGCATGCAACA 58.846 47.619 21.98 0.89 0.00 3.33
1328 4696 1.135575 GCAAGTCCTGTAGCATGCAAC 60.136 52.381 21.98 7.75 34.10 4.17
1329 4697 1.167851 GCAAGTCCTGTAGCATGCAA 58.832 50.000 21.98 3.87 34.10 4.08
1340 4708 2.024414 GTGTTGAGGTTTGCAAGTCCT 58.976 47.619 20.28 20.28 0.00 3.85
1369 4737 4.591321 AGTGGGTGATTGTGGATTGTAT 57.409 40.909 0.00 0.00 0.00 2.29
1382 4750 2.238084 AGAGTCATGCTAGTGGGTGA 57.762 50.000 0.00 0.00 0.00 4.02
1444 4812 8.917415 TTGTAGATCGCTGAATATGATATGTC 57.083 34.615 0.00 0.00 0.00 3.06
1606 4977 4.588899 ACTGCCATTTGTAGAATGCACTA 58.411 39.130 0.00 0.00 0.00 2.74
1609 4980 4.870123 AAACTGCCATTTGTAGAATGCA 57.130 36.364 0.00 0.00 0.00 3.96
1973 5347 4.042187 TGAGGAAAAGGAAGAGAGGAAAGG 59.958 45.833 0.00 0.00 0.00 3.11
1977 5351 5.303078 CGATATGAGGAAAAGGAAGAGAGGA 59.697 44.000 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.