Multiple sequence alignment - TraesCS5B01G379700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G379700 chr5B 100.000 6073 0 0 1 6073 557807489 557801417 0.000000e+00 11215.0
1 TraesCS5B01G379700 chr5B 88.889 54 5 1 6011 6064 420979839 420979891 1.410000e-06 65.8
2 TraesCS5B01G379700 chr5D 94.547 5171 200 38 740 5885 455816373 455811260 0.000000e+00 7912.0
3 TraesCS5B01G379700 chr5D 92.519 401 25 4 361 759 455816779 455816382 2.460000e-158 569.0
4 TraesCS5B01G379700 chr5D 91.268 355 23 2 1 347 455817231 455816877 1.530000e-130 477.0
5 TraesCS5B01G379700 chr5D 87.310 197 17 6 348 537 54778707 54778512 1.020000e-52 219.0
6 TraesCS5B01G379700 chr5D 86.139 202 18 6 349 541 539226156 539225956 6.170000e-50 209.0
7 TraesCS5B01G379700 chr5D 93.204 103 7 0 5871 5973 455810083 455809981 1.050000e-32 152.0
8 TraesCS5B01G379700 chr5D 88.889 54 5 1 6020 6073 537165310 537165258 1.410000e-06 65.8
9 TraesCS5B01G379700 chr5A 96.337 1802 51 10 2869 4662 573811660 573813454 0.000000e+00 2948.0
10 TraesCS5B01G379700 chr5A 93.002 1229 51 14 820 2032 573809242 573810451 0.000000e+00 1760.0
11 TraesCS5B01G379700 chr5A 92.568 1211 67 13 4769 5973 573813590 573814783 0.000000e+00 1716.0
12 TraesCS5B01G379700 chr5A 93.897 852 36 7 2030 2866 573810647 573811497 0.000000e+00 1271.0
13 TraesCS5B01G379700 chr5A 84.682 346 46 5 3 346 573807160 573807500 7.540000e-89 339.0
14 TraesCS5B01G379700 chr5A 90.769 65 4 2 6006 6070 10117898 10117960 1.080000e-12 86.1
15 TraesCS5B01G379700 chr6D 82.528 269 47 0 79 347 381007928 381007660 2.830000e-58 237.0
16 TraesCS5B01G379700 chr6D 85.714 126 11 6 5856 5979 10719357 10719237 6.390000e-25 126.0
17 TraesCS5B01G379700 chr7D 82.528 269 45 2 79 347 549700834 549700568 1.020000e-57 235.0
18 TraesCS5B01G379700 chr7D 86.792 53 7 0 6021 6073 47425781 47425729 6.570000e-05 60.2
19 TraesCS5B01G379700 chr3D 82.463 268 41 5 80 346 452623990 452623728 4.730000e-56 230.0
20 TraesCS5B01G379700 chr3D 81.955 266 42 5 82 346 549469698 549469438 2.850000e-53 220.0
21 TraesCS5B01G379700 chr3D 84.906 212 21 8 338 540 476503520 476503311 2.870000e-48 204.0
22 TraesCS5B01G379700 chr3D 87.826 115 13 1 5863 5976 73731675 73731561 3.820000e-27 134.0
23 TraesCS5B01G379700 chr3D 85.714 63 7 2 6011 6073 579896086 579896146 1.410000e-06 65.8
24 TraesCS5B01G379700 chr1A 81.685 273 49 1 76 347 572682144 572681872 6.120000e-55 226.0
25 TraesCS5B01G379700 chr1A 89.286 56 5 1 6012 6067 391947482 391947428 1.090000e-07 69.4
26 TraesCS5B01G379700 chr1B 86.408 206 19 5 339 536 90310107 90310311 3.690000e-52 217.0
27 TraesCS5B01G379700 chr6B 86.058 208 20 5 338 537 279006171 279005965 1.330000e-51 215.0
28 TraesCS5B01G379700 chr2B 86.935 199 16 5 348 537 570063867 570064064 1.330000e-51 215.0
29 TraesCS5B01G379700 chr2B 80.297 269 52 1 79 347 222122184 222122451 1.030000e-47 202.0
30 TraesCS5B01G379700 chr2B 84.874 119 17 1 5853 5971 476396215 476396332 1.070000e-22 119.0
31 TraesCS5B01G379700 chr1D 81.181 271 44 6 80 347 192363036 192362770 1.710000e-50 211.0
32 TraesCS5B01G379700 chr1D 85.507 207 20 6 338 536 418405019 418404815 2.220000e-49 207.0
33 TraesCS5B01G379700 chr1D 85.470 117 15 2 5857 5973 309578472 309578586 2.970000e-23 121.0
34 TraesCS5B01G379700 chr1D 90.769 65 4 2 6006 6070 364067388 364067450 1.080000e-12 86.1
35 TraesCS5B01G379700 chr4B 85.308 211 18 10 338 537 22551540 22551748 7.980000e-49 206.0
36 TraesCS5B01G379700 chr7B 88.785 107 12 0 5867 5973 323836190 323836084 1.370000e-26 132.0
37 TraesCS5B01G379700 chr7B 91.935 62 4 1 6012 6073 237501934 237501874 1.080000e-12 86.1
38 TraesCS5B01G379700 chr3B 86.957 115 14 1 5863 5976 119080083 119079969 1.780000e-25 128.0
39 TraesCS5B01G379700 chr2D 86.207 116 13 3 5856 5970 520511991 520511878 8.270000e-24 122.0
40 TraesCS5B01G379700 chr2D 86.441 59 4 2 6016 6073 518039575 518039630 1.830000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G379700 chr5B 557801417 557807489 6072 True 11215.0 11215 100.0000 1 6073 1 chr5B.!!$R1 6072
1 TraesCS5B01G379700 chr5D 455809981 455817231 7250 True 2277.5 7912 92.8845 1 5973 4 chr5D.!!$R4 5972
2 TraesCS5B01G379700 chr5A 573807160 573814783 7623 False 1606.8 2948 92.0972 3 5973 5 chr5A.!!$F2 5970

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
398 491 0.681243 GGTGAGGAAGGGGCAATGAC 60.681 60.000 0.00 0.0 0.00 3.06 F
1219 2538 0.325272 AAGAAGCTTCCCCGTTCCTC 59.675 55.000 22.81 0.0 0.00 3.71 F
1267 2587 0.603065 GTTTCTTCTGGCCGCCATTT 59.397 50.000 13.86 0.0 30.82 2.32 F
3046 4756 1.203038 TCCACCTGTGATGCCAAACAT 60.203 47.619 0.00 0.0 43.54 2.71 F
4942 6712 0.109532 TCACACCATTTTCCGAGCCA 59.890 50.000 0.00 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2180 3706 0.240945 CCAAAGGTGCCACGATGAAC 59.759 55.000 0.0 0.0 0.00 3.18 R
3046 4756 1.064611 AGTCTCGCAACCTCTAGGCTA 60.065 52.381 0.0 0.0 39.32 3.93 R
3355 5065 3.127425 AGAGTACAACCAGCCTTTGAC 57.873 47.619 0.0 0.0 0.00 3.18 R
4952 6722 0.884704 CCTGCAAGTGTACCAAGCGT 60.885 55.000 0.0 0.0 0.00 5.07 R
5984 8946 0.118346 TCAAGCCTTCTGGTAGGGGA 59.882 55.000 0.0 0.0 35.74 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 4.423732 AGATGTTTGCACAAAGAACACAC 58.576 39.130 3.12 2.15 36.25 3.82
157 166 1.431036 GGCGGCTTCTTGAAGATGC 59.569 57.895 20.86 20.86 42.61 3.91
167 176 5.124457 GCTTCTTGAAGATGCAATAAGGTGA 59.876 40.000 23.16 0.00 42.79 4.02
238 247 1.837439 TGTGAAGGTGTGTCTCTGGTT 59.163 47.619 0.00 0.00 0.00 3.67
245 254 5.662674 AGGTGTGTCTCTGGTTAATCTAC 57.337 43.478 0.00 0.00 0.00 2.59
251 260 7.117956 GTGTGTCTCTGGTTAATCTACCTTTTC 59.882 40.741 0.00 0.00 39.04 2.29
379 472 2.415697 AACAAGTTTTGCCGAATCCG 57.584 45.000 0.00 0.00 0.00 4.18
398 491 0.681243 GGTGAGGAAGGGGCAATGAC 60.681 60.000 0.00 0.00 0.00 3.06
412 505 3.876589 ATGACGGTGGCGCGTCTTT 62.877 57.895 13.81 0.00 36.25 2.52
452 716 1.134159 AGTCGTCGCTAGGTGGACTAT 60.134 52.381 0.00 0.00 36.28 2.12
460 724 3.570125 CGCTAGGTGGACTATGAATCTGA 59.430 47.826 0.00 0.00 0.00 3.27
502 766 7.558161 TTCTGATTTGTACTGCTATGATTGG 57.442 36.000 0.00 0.00 0.00 3.16
567 831 7.382898 GCCTCCTTTGGTTTACATGAATTTTA 58.617 34.615 0.00 0.00 0.00 1.52
712 1142 8.918202 AAAAGTACATTATCTTGGACTCAACA 57.082 30.769 0.00 0.00 39.96 3.33
715 1145 7.551585 AGTACATTATCTTGGACTCAACAGAG 58.448 38.462 0.00 0.00 35.88 3.35
722 1152 6.624352 TCTTGGACTCAACAGAGAAAAATG 57.376 37.500 0.00 0.00 33.55 2.32
726 1156 4.083802 GGACTCAACAGAGAAAAATGTCCG 60.084 45.833 0.00 0.00 33.34 4.79
838 2146 5.546499 GGACATTCCTATACCCTACCATGAA 59.454 44.000 0.00 0.00 32.53 2.57
854 2162 3.578282 CCATGAACCAAAAGGCCTAAACT 59.422 43.478 5.16 0.00 0.00 2.66
858 2166 2.594131 ACCAAAAGGCCTAAACTCACC 58.406 47.619 5.16 0.00 0.00 4.02
917 2233 1.203212 TCTAAACCCTCCCTGTCCGAA 60.203 52.381 0.00 0.00 0.00 4.30
928 2244 1.801178 CCTGTCCGAACTTCTTGAAGC 59.199 52.381 9.98 0.00 0.00 3.86
1219 2538 0.325272 AAGAAGCTTCCCCGTTCCTC 59.675 55.000 22.81 0.00 0.00 3.71
1230 2549 2.548493 CCCCGTTCCTCGTTTCTTGTTA 60.548 50.000 0.00 0.00 37.94 2.41
1232 2551 3.370061 CCCGTTCCTCGTTTCTTGTTATC 59.630 47.826 0.00 0.00 37.94 1.75
1258 2578 5.222631 CCTTCCATTTTTCGTTTCTTCTGG 58.777 41.667 0.00 0.00 0.00 3.86
1259 2579 4.237349 TCCATTTTTCGTTTCTTCTGGC 57.763 40.909 0.00 0.00 0.00 4.85
1260 2580 3.005367 TCCATTTTTCGTTTCTTCTGGCC 59.995 43.478 0.00 0.00 0.00 5.36
1267 2587 0.603065 GTTTCTTCTGGCCGCCATTT 59.397 50.000 13.86 0.00 30.82 2.32
1326 2646 3.393970 TTCCCCTGGCGCTGAGAG 61.394 66.667 7.64 0.00 0.00 3.20
1364 2684 2.504367 CGGTGAGGTGGAACTTTGAAT 58.496 47.619 0.00 0.00 36.74 2.57
1377 2697 7.492344 GTGGAACTTTGAATCAAGAACAATTGT 59.508 33.333 4.92 4.92 0.00 2.71
1401 2721 3.063588 GCCTTTTCTACGACATAGGTTGC 59.936 47.826 0.00 0.00 31.02 4.17
1402 2722 4.504858 CCTTTTCTACGACATAGGTTGCT 58.495 43.478 0.00 0.00 31.02 3.91
1428 2748 4.047142 GCTGCTGCTTATATTGCTTTTCC 58.953 43.478 8.53 0.00 36.03 3.13
1464 2784 2.102420 TGTCGAATACCTAGGGTGCATG 59.898 50.000 14.81 0.00 36.19 4.06
1559 2879 7.119846 GCTTGACATCTTACATTCTTACTGGTT 59.880 37.037 0.00 0.00 0.00 3.67
1615 2935 7.439157 TTGACTTGGACAAGAATAATGACAG 57.561 36.000 18.15 0.00 40.79 3.51
1623 2943 7.173218 TGGACAAGAATAATGACAGTGAACTTC 59.827 37.037 0.00 0.00 0.00 3.01
1659 2979 1.392589 CTGCGCAATTTACTGGGGAT 58.607 50.000 13.05 0.00 0.00 3.85
1672 2992 8.943594 ATTTACTGGGGATAAAACTGTAAACA 57.056 30.769 0.00 0.00 39.55 2.83
1739 3060 8.282982 TCAGTATAGATGTTTCCTAAGAGAGGT 58.717 37.037 0.00 0.00 46.76 3.85
1770 3091 6.804295 GTCTCGACTTTATATAGGCATGTCAG 59.196 42.308 0.00 0.00 0.00 3.51
1775 3096 8.064222 CGACTTTATATAGGCATGTCAGTTTTG 58.936 37.037 0.00 0.00 0.00 2.44
1838 3159 2.977772 TTTTTCCCAAGTTGGTGCAG 57.022 45.000 20.54 5.39 35.17 4.41
1839 3160 2.151502 TTTTCCCAAGTTGGTGCAGA 57.848 45.000 20.54 7.76 35.17 4.26
1840 3161 2.380064 TTTCCCAAGTTGGTGCAGAT 57.620 45.000 20.54 0.00 35.17 2.90
1841 3162 3.517296 TTTCCCAAGTTGGTGCAGATA 57.483 42.857 20.54 3.38 35.17 1.98
1929 3256 1.471287 GCTCTTGATGCAGCAATGACA 59.529 47.619 19.07 1.88 35.56 3.58
2061 3586 5.952526 TCCATGCATGCTATTCATACTTG 57.047 39.130 21.69 2.87 33.19 3.16
2197 3724 1.608590 CTTGTTCATCGTGGCACCTTT 59.391 47.619 12.86 0.00 0.00 3.11
2309 3836 2.754552 TGCCATTGCTGAAATACAGGTC 59.245 45.455 0.00 0.00 45.82 3.85
2374 3910 4.737054 TGATTCCCGTAGAACTTAACGAC 58.263 43.478 0.00 0.00 41.55 4.34
2376 3912 4.789012 TTCCCGTAGAACTTAACGACAT 57.211 40.909 0.00 0.00 41.55 3.06
2384 3920 8.490355 CCGTAGAACTTAACGACATTTAAAACT 58.510 33.333 0.00 0.00 41.55 2.66
2388 3924 6.232139 ACTTAACGACATTTAAAACTCCCG 57.768 37.500 0.00 0.00 0.00 5.14
2546 4082 9.331282 GATGGCACTAGAAAGTAATACATTCTT 57.669 33.333 14.83 0.00 37.36 2.52
2637 4180 5.340439 AACAGGGTTACATAGTGAGTAGC 57.660 43.478 0.00 0.00 0.00 3.58
2644 4187 6.016443 GGGTTACATAGTGAGTAGCGACTAAT 60.016 42.308 0.00 0.00 35.45 1.73
2651 4194 6.710597 AGTGAGTAGCGACTAATTTGGATA 57.289 37.500 0.00 0.00 35.45 2.59
2691 4234 6.378582 ACTATTTTGTATTTTCCGCACACAG 58.621 36.000 0.00 0.00 0.00 3.66
2699 4242 3.462483 TTTCCGCACACAGAGTTTCTA 57.538 42.857 0.00 0.00 0.00 2.10
2703 4246 3.006430 TCCGCACACAGAGTTTCTATTGA 59.994 43.478 0.00 0.00 0.00 2.57
2866 4409 3.418684 TGGCCCTTCTGAAGTTAACTC 57.581 47.619 15.72 3.51 0.00 3.01
3032 4742 5.983333 AACAGGATTATCAGAATCCACCT 57.017 39.130 13.65 0.00 46.70 4.00
3046 4756 1.203038 TCCACCTGTGATGCCAAACAT 60.203 47.619 0.00 0.00 43.54 2.71
3203 4913 5.106317 ACGTGCGGAAATTGAAGTATGATTT 60.106 36.000 0.00 0.00 0.00 2.17
3355 5065 1.741706 AGAAAGATGTCAGGCAATGCG 59.258 47.619 0.00 0.00 0.00 4.73
3472 5182 6.904498 TCCGTCATGTGATAAATTTCGTTTT 58.096 32.000 0.00 0.00 0.00 2.43
3861 5571 0.614812 TGGGGAGGGCGTTAGTAAAC 59.385 55.000 0.00 0.00 0.00 2.01
3891 5601 6.016610 TGGTGTACAAAGTTTTCAGCTATTCC 60.017 38.462 0.00 0.00 0.00 3.01
4041 5751 5.351465 TGCCAGTAGCTTTAGAAGAATTTCG 59.649 40.000 0.00 0.00 44.23 3.46
4147 5857 1.238439 CTTCATGTGTTTCGGCTGGT 58.762 50.000 0.00 0.00 0.00 4.00
4358 6068 0.961753 CCAGAAAACTCCAAGGTGGC 59.038 55.000 0.00 0.00 37.47 5.01
4451 6162 6.511490 TTGGATTTGCACATTCCAATCAGGA 61.511 40.000 16.41 0.00 42.96 3.86
4555 6268 6.018832 ACTGTAAATTTGTTGCTTTCATGTGC 60.019 34.615 0.00 0.00 0.00 4.57
4561 6274 2.157738 GTTGCTTTCATGTGCTCCTCT 58.842 47.619 0.00 0.00 0.00 3.69
4620 6333 2.685897 ACTGCAGTATCTCCGAGAGAAC 59.314 50.000 20.16 5.08 42.27 3.01
4658 6371 7.746475 CGATGAGATAGAAAAGGTTTGTTTGAC 59.254 37.037 0.00 0.00 0.00 3.18
4669 6382 3.066203 GGTTTGTTTGACTGTACACCTGG 59.934 47.826 0.00 0.00 0.00 4.45
4684 6397 3.329520 ACACCTGGGCTGTTTAGACATTA 59.670 43.478 0.00 0.00 34.72 1.90
4687 6400 4.192317 CCTGGGCTGTTTAGACATTAGTC 58.808 47.826 0.00 0.00 45.31 2.59
4723 6436 4.647853 TGCGAGTATTTACCTCACCACTAT 59.352 41.667 0.00 0.00 0.00 2.12
4776 6544 3.384168 ACCTGCTCCCAAGTCATATACA 58.616 45.455 0.00 0.00 0.00 2.29
4778 6546 3.134623 CCTGCTCCCAAGTCATATACACA 59.865 47.826 0.00 0.00 0.00 3.72
4822 6590 3.466836 TGTGACTCAGACATTTGGACAC 58.533 45.455 0.00 0.00 0.00 3.67
4907 6677 4.637483 ATGAACATTTGGCCTTATCGTG 57.363 40.909 3.32 0.00 0.00 4.35
4909 6679 3.823873 TGAACATTTGGCCTTATCGTGTT 59.176 39.130 3.32 6.75 0.00 3.32
4910 6680 4.083003 TGAACATTTGGCCTTATCGTGTTC 60.083 41.667 20.07 20.07 42.41 3.18
4911 6681 3.686016 ACATTTGGCCTTATCGTGTTCT 58.314 40.909 3.32 0.00 0.00 3.01
4912 6682 4.839121 ACATTTGGCCTTATCGTGTTCTA 58.161 39.130 3.32 0.00 0.00 2.10
4913 6683 5.250200 ACATTTGGCCTTATCGTGTTCTAA 58.750 37.500 3.32 0.00 0.00 2.10
4914 6684 5.354234 ACATTTGGCCTTATCGTGTTCTAAG 59.646 40.000 3.32 0.00 0.00 2.18
4915 6685 4.546829 TTGGCCTTATCGTGTTCTAAGT 57.453 40.909 3.32 0.00 0.00 2.24
4916 6686 5.664294 TTGGCCTTATCGTGTTCTAAGTA 57.336 39.130 3.32 0.00 0.00 2.24
4928 6698 4.850470 GTGTTCTAAGTACTAGCGTCACAC 59.150 45.833 0.00 1.76 0.00 3.82
4937 6707 1.393539 CTAGCGTCACACCATTTTCCG 59.606 52.381 0.00 0.00 0.00 4.30
4938 6708 0.250124 AGCGTCACACCATTTTCCGA 60.250 50.000 0.00 0.00 0.00 4.55
4939 6709 0.165944 GCGTCACACCATTTTCCGAG 59.834 55.000 0.00 0.00 0.00 4.63
4940 6710 0.165944 CGTCACACCATTTTCCGAGC 59.834 55.000 0.00 0.00 0.00 5.03
4941 6711 0.521735 GTCACACCATTTTCCGAGCC 59.478 55.000 0.00 0.00 0.00 4.70
4942 6712 0.109532 TCACACCATTTTCCGAGCCA 59.890 50.000 0.00 0.00 0.00 4.75
4943 6713 1.176527 CACACCATTTTCCGAGCCAT 58.823 50.000 0.00 0.00 0.00 4.40
4952 6722 5.124776 CCATTTTCCGAGCCATTTACAACTA 59.875 40.000 0.00 0.00 0.00 2.24
5039 6809 2.742710 CTTTCGGGCAGTCGTCGTCA 62.743 60.000 0.00 0.00 0.00 4.35
5077 6847 6.944234 AGAAGTATATGATGACTGACGACA 57.056 37.500 0.00 0.00 0.00 4.35
5110 6880 0.037975 GAAGACGAACCGCTAACCCA 60.038 55.000 0.00 0.00 0.00 4.51
5122 6892 2.799917 CGCTAACCCATCTGTCTAGCAC 60.800 54.545 0.00 0.00 35.73 4.40
5200 6970 2.820037 GGCCCTTCTTCGCCGAAG 60.820 66.667 20.46 20.46 40.65 3.79
5221 6991 0.947180 TAAGCGAACGTTCCAGTGGC 60.947 55.000 22.07 18.07 0.00 5.01
5333 7103 5.863935 GCTTGACAAGTTAATCATGGGAAAC 59.136 40.000 16.39 0.00 0.00 2.78
5492 7262 4.810491 ACACAATGCAAAAAGAATGACACC 59.190 37.500 0.00 0.00 0.00 4.16
5618 7388 4.083643 CCATAATGAAGACTAAGCATGGCG 60.084 45.833 0.00 0.00 0.00 5.69
5657 7427 8.856490 AAAGTAAACTGCACAAAGATAAACTG 57.144 30.769 0.00 0.00 0.00 3.16
5709 7479 7.631717 AAATCAAGGCTTTGTAACCTCTATC 57.368 36.000 8.56 0.00 34.31 2.08
5717 7487 6.183360 GGCTTTGTAACCTCTATCCATTGTTC 60.183 42.308 0.00 0.00 0.00 3.18
5727 7497 7.284034 ACCTCTATCCATTGTTCAAAGCTTATG 59.716 37.037 0.00 0.00 0.00 1.90
5737 7507 5.009610 TGTTCAAAGCTTATGAAAGGTCACC 59.990 40.000 19.06 10.11 42.53 4.02
5771 7541 1.798813 CCCACTTGTACGCTTGAACTC 59.201 52.381 0.00 0.00 0.00 3.01
5774 7544 2.731976 CACTTGTACGCTTGAACTCCTC 59.268 50.000 0.00 0.00 0.00 3.71
5802 7572 3.067320 GGAAGTGGCCATAAGCTTGATTC 59.933 47.826 9.72 2.68 43.05 2.52
5955 8917 3.744940 ACATCCATGTTCCAAGACCAT 57.255 42.857 0.00 0.00 37.90 3.55
5973 8935 1.390123 CATCAAACGACCACTACTGCG 59.610 52.381 0.00 0.00 0.00 5.18
5974 8936 0.942410 TCAAACGACCACTACTGCGC 60.942 55.000 0.00 0.00 0.00 6.09
5975 8937 0.944311 CAAACGACCACTACTGCGCT 60.944 55.000 9.73 0.00 0.00 5.92
5976 8938 0.944311 AAACGACCACTACTGCGCTG 60.944 55.000 13.23 13.23 0.00 5.18
5977 8939 2.083835 AACGACCACTACTGCGCTGT 62.084 55.000 23.67 23.67 0.00 4.40
5978 8940 1.801913 CGACCACTACTGCGCTGTC 60.802 63.158 23.87 7.31 0.00 3.51
5979 8941 1.801913 GACCACTACTGCGCTGTCG 60.802 63.158 23.87 19.44 39.07 4.35
5991 8953 4.208686 CTGTCGCCGCTCCCCTAC 62.209 72.222 0.00 0.00 0.00 3.18
5996 8958 3.081409 GCCGCTCCCCTACCAGAA 61.081 66.667 0.00 0.00 0.00 3.02
5997 8959 3.095347 GCCGCTCCCCTACCAGAAG 62.095 68.421 0.00 0.00 0.00 2.85
5998 8960 2.435693 CCGCTCCCCTACCAGAAGG 61.436 68.421 0.00 0.00 42.21 3.46
5999 8961 2.911928 GCTCCCCTACCAGAAGGC 59.088 66.667 0.00 0.00 39.06 4.35
6000 8962 1.690985 GCTCCCCTACCAGAAGGCT 60.691 63.158 0.00 0.00 39.06 4.58
6001 8963 1.275421 GCTCCCCTACCAGAAGGCTT 61.275 60.000 0.00 0.00 39.06 4.35
6002 8964 0.543749 CTCCCCTACCAGAAGGCTTG 59.456 60.000 3.46 0.00 39.06 4.01
6003 8965 0.118346 TCCCCTACCAGAAGGCTTGA 59.882 55.000 3.46 0.00 39.06 3.02
6004 8966 0.253327 CCCCTACCAGAAGGCTTGAC 59.747 60.000 3.46 0.00 39.06 3.18
6005 8967 0.253327 CCCTACCAGAAGGCTTGACC 59.747 60.000 3.46 0.00 39.06 4.02
6014 8976 3.840437 GGCTTGACCTTGTGTGCA 58.160 55.556 0.00 0.00 34.51 4.57
6015 8977 1.360192 GGCTTGACCTTGTGTGCAC 59.640 57.895 10.75 10.75 34.51 4.57
6016 8978 1.383456 GGCTTGACCTTGTGTGCACA 61.383 55.000 17.42 17.42 39.98 4.57
6017 8979 0.670162 GCTTGACCTTGTGTGCACAT 59.330 50.000 24.69 6.14 41.52 3.21
6018 8980 1.601162 GCTTGACCTTGTGTGCACATG 60.601 52.381 24.69 15.65 41.52 3.21
6019 8981 0.385029 TTGACCTTGTGTGCACATGC 59.615 50.000 24.69 11.88 41.52 4.06
6020 8982 1.286880 GACCTTGTGTGCACATGCC 59.713 57.895 24.69 11.08 41.52 4.40
6021 8983 2.146073 GACCTTGTGTGCACATGCCC 62.146 60.000 24.69 10.68 41.52 5.36
6022 8984 2.652530 CTTGTGTGCACATGCCCC 59.347 61.111 24.69 10.27 41.52 5.80
6023 8985 1.904865 CTTGTGTGCACATGCCCCT 60.905 57.895 24.69 0.00 41.52 4.79
6024 8986 1.457267 TTGTGTGCACATGCCCCTT 60.457 52.632 24.69 0.00 41.52 3.95
6025 8987 1.047596 TTGTGTGCACATGCCCCTTT 61.048 50.000 24.69 0.00 41.52 3.11
6026 8988 0.178978 TGTGTGCACATGCCCCTTTA 60.179 50.000 24.69 0.00 41.18 1.85
6027 8989 0.527565 GTGTGCACATGCCCCTTTAG 59.472 55.000 24.69 0.00 41.18 1.85
6028 8990 0.611618 TGTGCACATGCCCCTTTAGG 60.612 55.000 17.42 0.00 41.18 2.69
6029 8991 0.323360 GTGCACATGCCCCTTTAGGA 60.323 55.000 13.17 0.00 41.18 2.94
6030 8992 0.323360 TGCACATGCCCCTTTAGGAC 60.323 55.000 0.49 0.00 41.18 3.85
6031 8993 1.037579 GCACATGCCCCTTTAGGACC 61.038 60.000 0.00 0.00 38.24 4.46
6032 8994 0.331278 CACATGCCCCTTTAGGACCA 59.669 55.000 0.00 0.00 38.24 4.02
6033 8995 0.625849 ACATGCCCCTTTAGGACCAG 59.374 55.000 0.00 0.00 38.24 4.00
6034 8996 0.625849 CATGCCCCTTTAGGACCAGT 59.374 55.000 0.00 0.00 38.24 4.00
6035 8997 0.625849 ATGCCCCTTTAGGACCAGTG 59.374 55.000 0.00 0.00 38.24 3.66
6036 8998 1.378646 GCCCCTTTAGGACCAGTGC 60.379 63.158 0.00 0.00 38.24 4.40
6037 8999 1.303282 CCCCTTTAGGACCAGTGCC 59.697 63.158 0.00 0.00 38.24 5.01
6038 9000 1.303282 CCCTTTAGGACCAGTGCCC 59.697 63.158 0.00 0.00 38.24 5.36
6039 9001 1.208165 CCCTTTAGGACCAGTGCCCT 61.208 60.000 7.36 7.36 38.24 5.19
6040 9002 0.035056 CCTTTAGGACCAGTGCCCTG 60.035 60.000 11.31 0.00 37.39 4.45
6054 9016 4.803426 CCTGGAGCCGCAGTCGTC 62.803 72.222 0.00 0.00 0.00 4.20
6055 9017 4.056125 CTGGAGCCGCAGTCGTCA 62.056 66.667 0.00 0.00 0.00 4.35
6056 9018 4.357947 TGGAGCCGCAGTCGTCAC 62.358 66.667 0.00 0.00 0.00 3.67
6061 9023 3.403057 CCGCAGTCGTCACCGTTG 61.403 66.667 0.00 0.00 35.01 4.10
6062 9024 2.354188 CGCAGTCGTCACCGTTGA 60.354 61.111 0.00 0.00 35.01 3.18
6063 9025 1.947146 CGCAGTCGTCACCGTTGAA 60.947 57.895 0.00 0.00 31.90 2.69
6064 9026 1.282248 CGCAGTCGTCACCGTTGAAT 61.282 55.000 0.00 0.00 31.90 2.57
6065 9027 0.438830 GCAGTCGTCACCGTTGAATC 59.561 55.000 0.00 0.00 31.90 2.52
6066 9028 1.068474 CAGTCGTCACCGTTGAATCC 58.932 55.000 0.00 0.00 31.90 3.01
6067 9029 0.966920 AGTCGTCACCGTTGAATCCT 59.033 50.000 0.00 0.00 31.90 3.24
6068 9030 1.343465 AGTCGTCACCGTTGAATCCTT 59.657 47.619 0.00 0.00 31.90 3.36
6069 9031 1.459592 GTCGTCACCGTTGAATCCTTG 59.540 52.381 0.00 0.00 31.90 3.61
6070 9032 0.165944 CGTCACCGTTGAATCCTTGC 59.834 55.000 0.00 0.00 31.90 4.01
6071 9033 1.234821 GTCACCGTTGAATCCTTGCA 58.765 50.000 0.00 0.00 31.90 4.08
6072 9034 1.812571 GTCACCGTTGAATCCTTGCAT 59.187 47.619 0.00 0.00 31.90 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 166 3.008485 GCTAGGAGGGGATCACCTTATTG 59.992 52.174 20.12 11.80 42.10 1.90
167 176 2.002730 AATGGGGGCTAGGAGGGGAT 62.003 60.000 0.00 0.00 0.00 3.85
195 204 0.385751 CCACCGACGATGCTAGACAT 59.614 55.000 0.00 0.00 43.54 3.06
196 205 1.663379 CCCACCGACGATGCTAGACA 61.663 60.000 0.00 0.00 0.00 3.41
222 231 5.046520 GGTAGATTAACCAGAGACACACCTT 60.047 44.000 0.00 0.00 39.50 3.50
238 247 6.461648 CGAGCAGATCCAGAAAAGGTAGATTA 60.462 42.308 0.00 0.00 0.00 1.75
245 254 1.208052 TCCGAGCAGATCCAGAAAAGG 59.792 52.381 0.00 0.00 0.00 3.11
251 260 3.583806 GAACATATCCGAGCAGATCCAG 58.416 50.000 0.00 0.00 0.00 3.86
379 472 0.681243 GTCATTGCCCCTTCCTCACC 60.681 60.000 0.00 0.00 0.00 4.02
412 505 1.962822 CAAGCACTGAAGCGAGCCA 60.963 57.895 0.00 0.00 40.15 4.75
502 766 9.761504 TGAGAAAACATCTGATCTATTCATCTC 57.238 33.333 0.00 0.00 38.96 2.75
537 801 4.456662 TGTAAACCAAAGGAGGCCTTAA 57.543 40.909 6.77 0.00 43.92 1.85
690 1120 7.397476 TCTCTGTTGAGTCCAAGATAATGTACT 59.603 37.037 0.00 0.00 40.98 2.73
692 1122 7.718334 TCTCTGTTGAGTCCAAGATAATGTA 57.282 36.000 0.00 0.00 40.98 2.29
712 1142 7.227512 GGTTCATATGATCGGACATTTTTCTCT 59.772 37.037 6.17 0.00 0.00 3.10
715 1145 7.026631 TGGTTCATATGATCGGACATTTTTC 57.973 36.000 6.17 0.00 0.00 2.29
722 1152 5.527214 TGTCATTTGGTTCATATGATCGGAC 59.473 40.000 6.17 1.33 35.18 4.79
726 1156 7.664731 AGGAGATGTCATTTGGTTCATATGATC 59.335 37.037 6.17 5.71 35.18 2.92
774 2082 6.550843 TGTAGAAAATGAAACGGCATGTATG 58.449 36.000 0.00 0.00 0.00 2.39
827 2135 1.824852 GCCTTTTGGTTCATGGTAGGG 59.175 52.381 0.00 0.00 42.99 3.53
838 2146 2.594131 GGTGAGTTTAGGCCTTTTGGT 58.406 47.619 12.58 0.00 42.99 3.67
917 2233 2.224646 GGGGAGAAGTGCTTCAAGAAGT 60.225 50.000 13.58 0.00 41.84 3.01
928 2244 0.615850 GGAGTGAAGGGGGAGAAGTG 59.384 60.000 0.00 0.00 0.00 3.16
1219 2538 4.575885 TGGAAGGGAGATAACAAGAAACG 58.424 43.478 0.00 0.00 0.00 3.60
1230 2549 5.325239 AGAAACGAAAAATGGAAGGGAGAT 58.675 37.500 0.00 0.00 0.00 2.75
1232 2551 5.241728 AGAAGAAACGAAAAATGGAAGGGAG 59.758 40.000 0.00 0.00 0.00 4.30
1267 2587 1.803334 GTACATCACTTGTTCGGCCA 58.197 50.000 2.24 0.00 39.87 5.36
1364 2684 6.959639 AGAAAAGGCTACAATTGTTCTTGA 57.040 33.333 17.78 0.00 0.00 3.02
1377 2697 5.657474 CAACCTATGTCGTAGAAAAGGCTA 58.343 41.667 0.25 0.00 39.69 3.93
1401 2721 2.604855 GCAATATAAGCAGCAGCAGCAG 60.605 50.000 12.92 0.00 45.49 4.24
1402 2722 1.335810 GCAATATAAGCAGCAGCAGCA 59.664 47.619 12.92 0.00 45.49 4.41
1428 2748 1.582968 GACACAATGCACAGCCCAG 59.417 57.895 0.00 0.00 0.00 4.45
1464 2784 2.964978 GGTCACTGCAATGCCACC 59.035 61.111 1.53 0.00 0.00 4.61
1538 2858 8.598041 AGAGAAACCAGTAAGAATGTAAGATGT 58.402 33.333 0.00 0.00 0.00 3.06
1559 2879 2.040278 ACCACAGCAGCCAATAAGAGAA 59.960 45.455 0.00 0.00 0.00 2.87
1615 2935 4.640647 AGAGGGTTGTCTTTTGAAGTTCAC 59.359 41.667 4.68 0.00 0.00 3.18
1623 2943 1.000938 GCAGCAGAGGGTTGTCTTTTG 60.001 52.381 0.00 0.00 0.00 2.44
1739 3060 7.173032 TGCCTATATAAAGTCGAGACAGGATA 58.827 38.462 5.99 0.76 0.00 2.59
1770 3091 1.944709 ACAGCCTTGTACGGACAAAAC 59.055 47.619 15.40 9.42 44.90 2.43
1775 3096 2.033194 GCCACAGCCTTGTACGGAC 61.033 63.158 0.00 0.00 35.25 4.79
1929 3256 9.546428 CCTTTTCCAAAAGAATTGTTTATGTCT 57.454 29.630 12.51 0.00 46.39 3.41
1959 3286 4.002982 CAGCACTGCCTAATCTTGTAACA 58.997 43.478 0.00 0.00 0.00 2.41
2061 3586 4.575885 TCACTGGATAACAAGGTAACAGC 58.424 43.478 0.00 0.00 41.41 4.40
2180 3706 0.240945 CCAAAGGTGCCACGATGAAC 59.759 55.000 0.00 0.00 0.00 3.18
2197 3724 3.657398 ATCAGAGCAAATGGTGATCCA 57.343 42.857 0.00 0.00 44.10 3.41
2374 3910 8.721478 CATATAGGATGTCGGGAGTTTTAAATG 58.279 37.037 0.00 0.00 0.00 2.32
2376 3912 6.708949 GCATATAGGATGTCGGGAGTTTTAAA 59.291 38.462 0.00 0.00 0.00 1.52
2384 3920 3.169512 TCTGCATATAGGATGTCGGGA 57.830 47.619 0.00 0.00 0.00 5.14
2388 3924 5.420421 TCCTAGCTTCTGCATATAGGATGTC 59.580 44.000 0.00 0.00 38.16 3.06
2637 4180 8.018677 AGTATGCGAAATATCCAAATTAGTCG 57.981 34.615 0.00 0.00 0.00 4.18
2644 4187 7.497595 AGTCACTAGTATGCGAAATATCCAAA 58.502 34.615 0.00 0.00 0.00 3.28
2651 4194 8.718102 ACAAAATAGTCACTAGTATGCGAAAT 57.282 30.769 0.00 0.00 0.00 2.17
2691 4234 9.713713 AAAGTTCCTCTACTTCAATAGAAACTC 57.286 33.333 0.00 0.00 37.37 3.01
2699 4242 5.049405 CACGCAAAAGTTCCTCTACTTCAAT 60.049 40.000 0.00 0.00 37.37 2.57
2703 4246 3.808174 GTCACGCAAAAGTTCCTCTACTT 59.192 43.478 0.00 0.00 39.97 2.24
2748 4291 8.413229 AGTGTCATTAATTATTGTTACATGCCC 58.587 33.333 7.13 0.00 0.00 5.36
2847 4390 3.704800 AGAGTTAACTTCAGAAGGGCC 57.295 47.619 14.90 0.00 0.00 5.80
3032 4742 2.512692 AGGCTATGTTTGGCATCACA 57.487 45.000 2.79 2.79 38.94 3.58
3046 4756 1.064611 AGTCTCGCAACCTCTAGGCTA 60.065 52.381 0.00 0.00 39.32 3.93
3355 5065 3.127425 AGAGTACAACCAGCCTTTGAC 57.873 47.619 0.00 0.00 0.00 3.18
3427 5137 6.094048 ACGGAATAAGATGGAAATGAACAGTG 59.906 38.462 0.00 0.00 0.00 3.66
3472 5182 7.574750 TCCCATAGAATACCCCAATCTAGAAAA 59.425 37.037 0.00 0.00 0.00 2.29
3861 5571 5.317733 TGAAAACTTTGTACACCAACCAG 57.682 39.130 0.00 0.00 31.20 4.00
3914 5624 5.694006 CCCTGTATGAATTCTCTCTTTAGCG 59.306 44.000 7.05 0.00 0.00 4.26
4021 5731 7.275123 CCGTAACGAAATTCTTCTAAAGCTACT 59.725 37.037 0.00 0.00 0.00 2.57
4041 5751 5.064198 TGCTAATACATTCACAAGCCGTAAC 59.936 40.000 0.00 0.00 0.00 2.50
4147 5857 6.012337 TCCAGAATCAAAGGGCACATATAA 57.988 37.500 0.00 0.00 0.00 0.98
4324 6034 6.655930 AGTTTTCTGGTTAGTTTCCTGTACA 58.344 36.000 0.00 0.00 0.00 2.90
4338 6048 1.754201 GCCACCTTGGAGTTTTCTGGT 60.754 52.381 0.00 0.00 40.96 4.00
4358 6068 9.927668 ATTAAAACACAAGGAAATTATGTGAGG 57.072 29.630 11.66 0.00 45.61 3.86
4390 6100 8.993121 CCGAAGCACTATATAGAAACAATCATT 58.007 33.333 16.79 0.00 0.00 2.57
4408 6119 3.300009 CAACAACAGATTTCCGAAGCAC 58.700 45.455 0.00 0.00 0.00 4.40
4542 6255 2.574006 AGAGGAGCACATGAAAGCAA 57.426 45.000 0.00 0.00 0.00 3.91
4543 6256 2.574006 AAGAGGAGCACATGAAAGCA 57.426 45.000 0.00 0.00 0.00 3.91
4620 6333 1.811266 CTCATCGCAGACGGTTGGG 60.811 63.158 0.00 0.00 42.51 4.12
4658 6371 2.301870 TCTAAACAGCCCAGGTGTACAG 59.698 50.000 0.00 1.36 43.73 2.74
4684 6397 2.095461 TCGCAGATGTTCTAGCAGACT 58.905 47.619 0.00 0.00 0.00 3.24
4687 6400 2.575694 ACTCGCAGATGTTCTAGCAG 57.424 50.000 0.00 0.00 33.89 4.24
4698 6411 3.093814 TGGTGAGGTAAATACTCGCAGA 58.906 45.455 8.08 0.00 44.96 4.26
4776 6544 2.165641 TGACGGCTTCGACTTATGATGT 59.834 45.455 0.00 0.00 37.63 3.06
4778 6546 2.481449 GGTGACGGCTTCGACTTATGAT 60.481 50.000 0.00 0.00 37.63 2.45
4875 6645 9.822185 AAGGCCAAATGTTCATTAGATAATTTC 57.178 29.630 5.01 0.00 0.00 2.17
4893 6663 4.901868 ACTTAGAACACGATAAGGCCAAA 58.098 39.130 5.01 0.00 34.05 3.28
4907 6677 4.083110 TGGTGTGACGCTAGTACTTAGAAC 60.083 45.833 0.00 0.00 0.00 3.01
4909 6679 3.678289 TGGTGTGACGCTAGTACTTAGA 58.322 45.455 0.00 0.00 0.00 2.10
4910 6680 4.634184 ATGGTGTGACGCTAGTACTTAG 57.366 45.455 0.00 0.00 0.00 2.18
4911 6681 5.395682 AAATGGTGTGACGCTAGTACTTA 57.604 39.130 0.00 0.00 0.00 2.24
4912 6682 3.955650 AATGGTGTGACGCTAGTACTT 57.044 42.857 0.00 0.00 0.00 2.24
4913 6683 3.955650 AAATGGTGTGACGCTAGTACT 57.044 42.857 0.00 0.00 0.00 2.73
4914 6684 3.370061 GGAAAATGGTGTGACGCTAGTAC 59.630 47.826 0.00 0.00 0.00 2.73
4915 6685 3.592059 GGAAAATGGTGTGACGCTAGTA 58.408 45.455 0.00 0.00 0.00 1.82
4916 6686 2.423577 GGAAAATGGTGTGACGCTAGT 58.576 47.619 0.00 0.00 0.00 2.57
4928 6698 4.082245 AGTTGTAAATGGCTCGGAAAATGG 60.082 41.667 0.00 0.00 0.00 3.16
4937 6707 3.181510 CCAAGCGTAGTTGTAAATGGCTC 60.182 47.826 0.00 0.00 0.00 4.70
4938 6708 2.747446 CCAAGCGTAGTTGTAAATGGCT 59.253 45.455 0.00 0.00 0.00 4.75
4939 6709 2.486592 ACCAAGCGTAGTTGTAAATGGC 59.513 45.455 0.00 0.00 0.00 4.40
4940 6710 4.691685 TGTACCAAGCGTAGTTGTAAATGG 59.308 41.667 0.00 0.00 0.00 3.16
4941 6711 5.407387 AGTGTACCAAGCGTAGTTGTAAATG 59.593 40.000 0.00 0.00 0.00 2.32
4942 6712 5.544650 AGTGTACCAAGCGTAGTTGTAAAT 58.455 37.500 0.00 0.00 0.00 1.40
4943 6713 4.947645 AGTGTACCAAGCGTAGTTGTAAA 58.052 39.130 0.00 0.00 0.00 2.01
4952 6722 0.884704 CCTGCAAGTGTACCAAGCGT 60.885 55.000 0.00 0.00 0.00 5.07
5039 6809 0.977395 CTTCTTCCTCCTCGGGTTGT 59.023 55.000 0.00 0.00 0.00 3.32
5077 6847 1.534729 GTCTTCGGGGCTTGATGTTT 58.465 50.000 0.00 0.00 0.00 2.83
5110 6880 2.555199 GAATTGCGGTGCTAGACAGAT 58.445 47.619 0.00 0.00 0.00 2.90
5122 6892 1.067000 TCAAAATGCCTGGAATTGCGG 60.067 47.619 0.00 0.00 0.00 5.69
5200 6970 0.438830 CACTGGAACGTTCGCTTAGC 59.561 55.000 21.34 7.55 0.00 3.09
5402 7172 4.217334 TCTGGCAATAATTTTCTGCGTGAA 59.783 37.500 0.00 0.00 36.93 3.18
5492 7262 4.052518 CCCTGGTTGCTCCCCTGG 62.053 72.222 0.00 6.02 39.96 4.45
5540 7310 9.268268 GGTATAATTTCATATCTTGTCGGTTCA 57.732 33.333 0.00 0.00 0.00 3.18
5700 7470 5.574188 AGCTTTGAACAATGGATAGAGGTT 58.426 37.500 0.00 0.00 0.00 3.50
5709 7479 6.458210 ACCTTTCATAAGCTTTGAACAATGG 58.542 36.000 17.88 17.70 33.03 3.16
5717 7487 6.817765 TTAGGTGACCTTTCATAAGCTTTG 57.182 37.500 10.53 3.18 34.61 2.77
5737 7507 6.348213 CGTACAAGTGGGAAAGGTCAATTTAG 60.348 42.308 0.00 0.00 0.00 1.85
5771 7541 0.991920 TGGCCACTTCCCTAAAGAGG 59.008 55.000 0.00 0.00 45.62 3.69
5774 7544 2.952310 GCTTATGGCCACTTCCCTAAAG 59.048 50.000 8.16 3.18 36.61 1.85
5802 7572 5.459762 CACTTACAAATTCAAGTTGCCACAG 59.540 40.000 0.00 0.00 32.72 3.66
5861 7631 3.811722 TCTGATCATTTTCGCACACAC 57.188 42.857 0.00 0.00 0.00 3.82
5863 7633 4.871993 AGATCTGATCATTTTCGCACAC 57.128 40.909 19.12 0.00 0.00 3.82
5899 8861 7.284919 TGTTTGAGATGCTATATACTTCCGA 57.715 36.000 0.00 0.00 0.00 4.55
5943 8905 2.225727 GGTCGTTTGATGGTCTTGGAAC 59.774 50.000 0.00 0.00 0.00 3.62
5955 8917 0.942410 GCGCAGTAGTGGTCGTTTGA 60.942 55.000 0.30 0.00 0.00 2.69
5974 8936 4.208686 GTAGGGGAGCGGCGACAG 62.209 72.222 12.98 0.00 0.00 3.51
5979 8941 3.081409 TTCTGGTAGGGGAGCGGC 61.081 66.667 0.00 0.00 0.00 6.53
5980 8942 2.435693 CCTTCTGGTAGGGGAGCGG 61.436 68.421 0.00 0.00 0.00 5.52
5981 8943 3.095347 GCCTTCTGGTAGGGGAGCG 62.095 68.421 0.00 0.00 35.74 5.03
5982 8944 1.275421 AAGCCTTCTGGTAGGGGAGC 61.275 60.000 0.00 0.00 35.74 4.70
5983 8945 0.543749 CAAGCCTTCTGGTAGGGGAG 59.456 60.000 0.00 0.00 35.74 4.30
5984 8946 0.118346 TCAAGCCTTCTGGTAGGGGA 59.882 55.000 0.00 0.00 35.74 4.81
5985 8947 0.253327 GTCAAGCCTTCTGGTAGGGG 59.747 60.000 0.00 0.00 35.74 4.79
5986 8948 0.253327 GGTCAAGCCTTCTGGTAGGG 59.747 60.000 0.00 0.00 35.74 3.53
5987 8949 3.863407 GGTCAAGCCTTCTGGTAGG 57.137 57.895 0.00 0.00 38.40 3.18
5997 8959 1.360192 GTGCACACAAGGTCAAGCC 59.640 57.895 13.17 0.00 37.58 4.35
5998 8960 0.670162 ATGTGCACACAAGGTCAAGC 59.330 50.000 24.37 0.00 45.41 4.01
5999 8961 1.601162 GCATGTGCACACAAGGTCAAG 60.601 52.381 24.37 4.85 45.41 3.02
6000 8962 0.385029 GCATGTGCACACAAGGTCAA 59.615 50.000 24.37 0.00 45.41 3.18
6001 8963 1.454572 GGCATGTGCACACAAGGTCA 61.455 55.000 24.37 0.00 45.41 4.02
6002 8964 1.286880 GGCATGTGCACACAAGGTC 59.713 57.895 24.37 10.09 45.41 3.85
6003 8965 2.202395 GGGCATGTGCACACAAGGT 61.202 57.895 24.37 2.07 45.57 3.50
6004 8966 2.652530 GGGCATGTGCACACAAGG 59.347 61.111 24.37 13.17 45.57 3.61
6010 8972 0.323360 TCCTAAAGGGGCATGTGCAC 60.323 55.000 10.75 10.75 45.53 4.57
6011 8973 0.323360 GTCCTAAAGGGGCATGTGCA 60.323 55.000 7.36 0.00 44.36 4.57
6012 8974 1.037579 GGTCCTAAAGGGGCATGTGC 61.038 60.000 0.00 0.00 42.62 4.57
6013 8975 0.331278 TGGTCCTAAAGGGGCATGTG 59.669 55.000 0.00 0.00 42.62 3.21
6014 8976 0.625849 CTGGTCCTAAAGGGGCATGT 59.374 55.000 0.00 0.00 42.62 3.21
6015 8977 0.625849 ACTGGTCCTAAAGGGGCATG 59.374 55.000 0.00 0.00 42.62 4.06
6016 8978 0.625849 CACTGGTCCTAAAGGGGCAT 59.374 55.000 0.00 0.00 42.62 4.40
6017 8979 2.074967 CACTGGTCCTAAAGGGGCA 58.925 57.895 0.00 0.00 42.62 5.36
6018 8980 1.378646 GCACTGGTCCTAAAGGGGC 60.379 63.158 0.00 0.00 39.42 5.80
6019 8981 1.303282 GGCACTGGTCCTAAAGGGG 59.697 63.158 0.00 0.00 35.41 4.79
6020 8982 1.303282 GGGCACTGGTCCTAAAGGG 59.697 63.158 0.00 0.00 35.27 3.95
6037 8999 4.803426 GACGACTGCGGCTCCAGG 62.803 72.222 0.00 0.00 43.91 4.45
6052 9014 1.234821 TGCAAGGATTCAACGGTGAC 58.765 50.000 0.44 0.00 31.90 3.67
6053 9015 2.198827 ATGCAAGGATTCAACGGTGA 57.801 45.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.