Multiple sequence alignment - TraesCS5B01G378200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G378200 chr5B 100.000 3176 0 0 1 3176 556629238 556626063 0.000000e+00 5866.0
1 TraesCS5B01G378200 chr6B 90.970 1783 122 18 767 2544 15235067 15233319 0.000000e+00 2364.0
2 TraesCS5B01G378200 chr6B 91.373 1646 95 13 899 2544 16267302 16268900 0.000000e+00 2209.0
3 TraesCS5B01G378200 chr6B 83.820 1508 201 21 988 2476 16433136 16434619 0.000000e+00 1393.0
4 TraesCS5B01G378200 chr6B 84.324 1295 182 9 988 2267 52981058 52979770 0.000000e+00 1247.0
5 TraesCS5B01G378200 chr6B 83.080 1318 166 24 1109 2410 15216747 15215471 0.000000e+00 1146.0
6 TraesCS5B01G378200 chr6B 82.939 1184 194 8 997 2178 90939340 90940517 0.000000e+00 1061.0
7 TraesCS5B01G378200 chr6B 80.182 1428 235 34 960 2361 16237269 16238674 0.000000e+00 1026.0
8 TraesCS5B01G378200 chr6B 95.640 344 12 2 2816 3159 686408602 686408262 1.670000e-152 549.0
9 TraesCS5B01G378200 chr6B 97.849 93 2 0 524 616 286726588 286726680 9.120000e-36 161.0
10 TraesCS5B01G378200 chr6B 94.340 53 2 1 2468 2519 90941038 90941090 2.630000e-11 80.5
11 TraesCS5B01G378200 chr6D 84.544 1501 203 13 989 2476 8552807 8551323 0.000000e+00 1459.0
12 TraesCS5B01G378200 chr6D 82.019 1179 194 15 983 2155 8967569 8968735 0.000000e+00 987.0
13 TraesCS5B01G378200 chr6D 78.367 1188 232 21 987 2164 8659830 8658658 0.000000e+00 747.0
14 TraesCS5B01G378200 chr3B 81.382 1418 233 25 960 2361 778342941 778341539 0.000000e+00 1127.0
15 TraesCS5B01G378200 chr3B 97.569 617 15 0 2543 3159 805234392 805233776 0.000000e+00 1057.0
16 TraesCS5B01G378200 chr3B 96.000 100 2 1 529 626 250575929 250576028 9.120000e-36 161.0
17 TraesCS5B01G378200 chr3D 96.117 618 23 1 2543 3159 498404741 498405358 0.000000e+00 1007.0
18 TraesCS5B01G378200 chrUn 80.015 1356 226 21 1188 2519 95438041 95439375 0.000000e+00 961.0
19 TraesCS5B01G378200 chrUn 85.567 388 33 11 2100 2476 42220944 42220569 4.970000e-103 385.0
20 TraesCS5B01G378200 chr2B 81.004 1195 211 14 988 2175 709426182 709424997 0.000000e+00 935.0
21 TraesCS5B01G378200 chr2B 96.907 97 0 2 528 622 153760997 153760902 3.280000e-35 159.0
22 TraesCS5B01G378200 chr3A 92.869 617 20 1 2543 3159 50724806 50725398 0.000000e+00 874.0
23 TraesCS5B01G378200 chr3A 96.842 95 2 1 531 625 310784271 310784178 1.180000e-34 158.0
24 TraesCS5B01G378200 chr4B 92.382 617 22 2 2543 3159 322696097 322696688 0.000000e+00 856.0
25 TraesCS5B01G378200 chr6A 83.528 941 123 16 1549 2476 9474626 9475547 0.000000e+00 850.0
26 TraesCS5B01G378200 chr2A 89.899 594 33 4 2543 3135 302147664 302148231 0.000000e+00 739.0
27 TraesCS5B01G378200 chr2A 96.842 95 3 0 531 625 362443162 362443068 3.280000e-35 159.0
28 TraesCS5B01G378200 chr2A 77.315 216 43 6 2947 3157 539034661 539034447 4.300000e-24 122.0
29 TraesCS5B01G378200 chr2A 86.765 68 4 4 2652 2716 617789495 617789560 1.580000e-08 71.3
30 TraesCS5B01G378200 chr5D 86.877 381 32 8 150 528 246020147 246019783 8.200000e-111 411.0
31 TraesCS5B01G378200 chr5D 93.443 122 8 0 5 126 246020589 246020468 7.000000e-42 182.0
32 TraesCS5B01G378200 chr4A 86.290 372 38 10 2790 3159 32065825 32065465 2.970000e-105 392.0
33 TraesCS5B01G378200 chr4A 91.758 182 12 2 2543 2723 32066097 32065918 1.890000e-62 250.0
34 TraesCS5B01G378200 chr4A 86.752 234 19 5 5 226 659470156 659470389 1.890000e-62 250.0
35 TraesCS5B01G378200 chr4A 86.752 234 19 5 5 226 659560168 659560401 1.890000e-62 250.0
36 TraesCS5B01G378200 chr4A 98.901 91 1 0 528 618 589084414 589084324 2.530000e-36 163.0
37 TraesCS5B01G378200 chr7A 89.163 203 11 4 6 198 133666520 133666721 3.170000e-60 243.0
38 TraesCS5B01G378200 chr1B 98.913 92 1 0 525 616 248358600 248358691 7.050000e-37 165.0
39 TraesCS5B01G378200 chr1A 98.901 91 1 0 527 617 98249523 98249433 2.530000e-36 163.0
40 TraesCS5B01G378200 chr5A 91.892 111 6 3 507 616 331394522 331394414 5.490000e-33 152.0
41 TraesCS5B01G378200 chr2D 78.829 222 40 6 2943 3157 550649171 550649392 3.300000e-30 143.0
42 TraesCS5B01G378200 chr2D 88.710 62 6 1 2656 2716 475878325 475878386 1.220000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G378200 chr5B 556626063 556629238 3175 True 5866.00 5866 100.0000 1 3176 1 chr5B.!!$R1 3175
1 TraesCS5B01G378200 chr6B 15233319 15235067 1748 True 2364.00 2364 90.9700 767 2544 1 chr6B.!!$R2 1777
2 TraesCS5B01G378200 chr6B 16267302 16268900 1598 False 2209.00 2209 91.3730 899 2544 1 chr6B.!!$F2 1645
3 TraesCS5B01G378200 chr6B 16433136 16434619 1483 False 1393.00 1393 83.8200 988 2476 1 chr6B.!!$F3 1488
4 TraesCS5B01G378200 chr6B 52979770 52981058 1288 True 1247.00 1247 84.3240 988 2267 1 chr6B.!!$R3 1279
5 TraesCS5B01G378200 chr6B 15215471 15216747 1276 True 1146.00 1146 83.0800 1109 2410 1 chr6B.!!$R1 1301
6 TraesCS5B01G378200 chr6B 16237269 16238674 1405 False 1026.00 1026 80.1820 960 2361 1 chr6B.!!$F1 1401
7 TraesCS5B01G378200 chr6B 90939340 90941090 1750 False 570.75 1061 88.6395 997 2519 2 chr6B.!!$F5 1522
8 TraesCS5B01G378200 chr6D 8551323 8552807 1484 True 1459.00 1459 84.5440 989 2476 1 chr6D.!!$R1 1487
9 TraesCS5B01G378200 chr6D 8967569 8968735 1166 False 987.00 987 82.0190 983 2155 1 chr6D.!!$F1 1172
10 TraesCS5B01G378200 chr6D 8658658 8659830 1172 True 747.00 747 78.3670 987 2164 1 chr6D.!!$R2 1177
11 TraesCS5B01G378200 chr3B 778341539 778342941 1402 True 1127.00 1127 81.3820 960 2361 1 chr3B.!!$R1 1401
12 TraesCS5B01G378200 chr3B 805233776 805234392 616 True 1057.00 1057 97.5690 2543 3159 1 chr3B.!!$R2 616
13 TraesCS5B01G378200 chr3D 498404741 498405358 617 False 1007.00 1007 96.1170 2543 3159 1 chr3D.!!$F1 616
14 TraesCS5B01G378200 chrUn 95438041 95439375 1334 False 961.00 961 80.0150 1188 2519 1 chrUn.!!$F1 1331
15 TraesCS5B01G378200 chr2B 709424997 709426182 1185 True 935.00 935 81.0040 988 2175 1 chr2B.!!$R2 1187
16 TraesCS5B01G378200 chr3A 50724806 50725398 592 False 874.00 874 92.8690 2543 3159 1 chr3A.!!$F1 616
17 TraesCS5B01G378200 chr4B 322696097 322696688 591 False 856.00 856 92.3820 2543 3159 1 chr4B.!!$F1 616
18 TraesCS5B01G378200 chr6A 9474626 9475547 921 False 850.00 850 83.5280 1549 2476 1 chr6A.!!$F1 927
19 TraesCS5B01G378200 chr2A 302147664 302148231 567 False 739.00 739 89.8990 2543 3135 1 chr2A.!!$F1 592
20 TraesCS5B01G378200 chr5D 246019783 246020589 806 True 296.50 411 90.1600 5 528 2 chr5D.!!$R1 523
21 TraesCS5B01G378200 chr4A 32065465 32066097 632 True 321.00 392 89.0240 2543 3159 2 chr4A.!!$R2 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
735 1035 0.033920 GCTTTGTTTGCCTCCCTTGG 59.966 55.0 0.00 0.00 0.00 3.61 F
785 1085 0.250684 TGCAAAAGGGATCGCTCACA 60.251 50.0 13.33 6.35 0.00 3.58 F
897 1214 0.522180 CCAAGCAGAAGCAGAAGCAG 59.478 55.0 0.00 0.00 45.49 4.24 F
1675 2010 0.793104 GGCACGCGCTCAAAACATAC 60.793 55.0 5.73 0.00 38.60 2.39 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1770 2105 1.300971 CCGACCACCTGAATGTGCTG 61.301 60.000 0.00 0.0 34.85 4.41 R
1827 2162 1.377725 CTTGGCCCTCGTCAGCATT 60.378 57.895 0.00 0.0 0.00 3.56 R
1987 2322 2.288948 TGCGCTTGAGCAATCCATTTTT 60.289 40.909 9.73 0.0 45.06 1.94 R
3011 3717 0.033405 CCAACCCCTCTCGTCTCCTA 60.033 60.000 0.00 0.0 0.00 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.420890 CTCGATGCAGCTCCTCCC 59.579 66.667 0.00 0.00 0.00 4.30
46 47 3.160047 CGATGCAGCTCCTCCCCT 61.160 66.667 0.00 0.00 0.00 4.79
47 48 2.509916 GATGCAGCTCCTCCCCTG 59.490 66.667 0.00 0.00 0.00 4.45
110 111 4.625028 AGGAACGCGACCTATTTATAACC 58.375 43.478 22.83 1.33 35.84 2.85
123 124 5.663158 ATTTATAACCCCACACCATAGCT 57.337 39.130 0.00 0.00 0.00 3.32
126 127 0.907704 AACCCCACACCATAGCTCGA 60.908 55.000 0.00 0.00 0.00 4.04
131 142 1.215244 CACACCATAGCTCGATGCAG 58.785 55.000 9.09 0.00 45.94 4.41
134 145 1.670406 CCATAGCTCGATGCAGGGC 60.670 63.158 9.09 0.00 45.94 5.19
141 152 1.588824 CTCGATGCAGGGCAAAAGCA 61.589 55.000 0.00 0.00 43.62 3.91
187 485 2.651361 CGAGGCACGACAGGACTT 59.349 61.111 0.00 0.00 45.77 3.01
198 496 4.755123 CACGACAGGACTTTGGAATAAACT 59.245 41.667 0.00 0.00 0.00 2.66
208 506 7.034685 ACTTTGGAATAAACTGTAAAAGCGT 57.965 32.000 0.00 0.00 0.00 5.07
215 513 2.450609 ACTGTAAAAGCGTCACCGAT 57.549 45.000 0.00 0.00 35.63 4.18
218 516 2.333926 TGTAAAAGCGTCACCGATCAG 58.666 47.619 0.00 0.00 35.63 2.90
253 551 3.766068 TGTAGATAGGACGATCGAGGT 57.234 47.619 24.34 7.60 0.00 3.85
261 560 4.129737 CGATCGAGGTGGCACCGT 62.130 66.667 29.76 18.57 44.90 4.83
290 589 2.809174 TCGCAAGATCACGCACGG 60.809 61.111 7.11 0.00 45.01 4.94
291 590 4.505217 CGCAAGATCACGCACGGC 62.505 66.667 7.11 0.00 43.02 5.68
292 591 3.422303 GCAAGATCACGCACGGCA 61.422 61.111 0.00 0.00 0.00 5.69
293 592 2.780643 CAAGATCACGCACGGCAG 59.219 61.111 0.00 0.00 0.00 4.85
294 593 3.121030 AAGATCACGCACGGCAGC 61.121 61.111 0.00 0.00 0.00 5.25
295 594 3.881952 AAGATCACGCACGGCAGCA 62.882 57.895 0.00 0.00 0.00 4.41
296 595 4.152625 GATCACGCACGGCAGCAC 62.153 66.667 0.00 0.00 0.00 4.40
297 596 4.986645 ATCACGCACGGCAGCACA 62.987 61.111 0.00 0.00 0.00 4.57
298 597 4.986645 TCACGCACGGCAGCACAT 62.987 61.111 0.00 0.00 0.00 3.21
299 598 2.850806 ATCACGCACGGCAGCACATA 62.851 55.000 0.00 0.00 0.00 2.29
300 599 2.125147 ACGCACGGCAGCACATAT 60.125 55.556 0.00 0.00 0.00 1.78
301 600 1.142965 ACGCACGGCAGCACATATA 59.857 52.632 0.00 0.00 0.00 0.86
302 601 0.249868 ACGCACGGCAGCACATATAT 60.250 50.000 0.00 0.00 0.00 0.86
303 602 0.439985 CGCACGGCAGCACATATATC 59.560 55.000 0.00 0.00 0.00 1.63
304 603 0.439985 GCACGGCAGCACATATATCG 59.560 55.000 0.00 0.00 0.00 2.92
305 604 1.934849 GCACGGCAGCACATATATCGA 60.935 52.381 0.00 0.00 0.00 3.59
306 605 1.721389 CACGGCAGCACATATATCGAC 59.279 52.381 0.00 0.00 0.00 4.20
310 609 3.120889 CGGCAGCACATATATCGACAAAG 60.121 47.826 0.00 0.00 0.00 2.77
319 618 5.177511 ACATATATCGACAAAGGAACATGCG 59.822 40.000 0.00 0.00 0.00 4.73
322 621 0.040514 CGACAAAGGAACATGCGCAA 60.041 50.000 17.11 0.00 0.00 4.85
327 626 0.899717 AAGGAACATGCGCAACCCAT 60.900 50.000 17.11 3.23 0.00 4.00
331 630 2.226437 GGAACATGCGCAACCCATATAG 59.774 50.000 17.11 0.00 0.00 1.31
332 631 1.238439 ACATGCGCAACCCATATAGC 58.762 50.000 17.11 0.00 0.00 2.97
353 653 0.108615 ATCGAAGCCCACAGAAGACG 60.109 55.000 0.00 0.00 0.00 4.18
372 672 2.248487 CGTAAGACGGAAGAAACCTCG 58.752 52.381 0.00 0.00 38.08 4.63
373 673 2.603953 GTAAGACGGAAGAAACCTCGG 58.396 52.381 0.00 0.00 0.00 4.63
444 744 1.680105 CGCACCAACACGATCGGTAC 61.680 60.000 20.98 0.82 0.00 3.34
483 783 6.636666 TTTTAATGTCGATCTACGTTCACC 57.363 37.500 8.02 0.00 43.13 4.02
487 787 0.454600 TCGATCTACGTTCACCAGGC 59.545 55.000 0.00 0.00 43.13 4.85
502 802 1.610624 CCAGGCAATTCTACACCGTGT 60.611 52.381 9.58 9.58 0.00 4.49
509 809 1.116536 TTCTACACCGTGTGCTCCCA 61.117 55.000 14.66 0.00 36.98 4.37
534 834 4.939509 AAAATACACGTGCCATGTACTC 57.060 40.909 17.22 0.00 35.43 2.59
535 835 2.596904 ATACACGTGCCATGTACTCC 57.403 50.000 17.22 0.00 35.43 3.85
536 836 0.533491 TACACGTGCCATGTACTCCC 59.467 55.000 17.22 0.00 0.00 4.30
537 837 1.192146 ACACGTGCCATGTACTCCCT 61.192 55.000 17.22 0.00 0.00 4.20
538 838 0.460284 CACGTGCCATGTACTCCCTC 60.460 60.000 0.82 0.00 0.00 4.30
539 839 1.144057 CGTGCCATGTACTCCCTCC 59.856 63.158 0.00 0.00 0.00 4.30
540 840 1.144057 GTGCCATGTACTCCCTCCG 59.856 63.158 0.00 0.00 0.00 4.63
541 841 1.305802 TGCCATGTACTCCCTCCGT 60.306 57.895 0.00 0.00 0.00 4.69
542 842 0.907704 TGCCATGTACTCCCTCCGTT 60.908 55.000 0.00 0.00 0.00 4.44
543 843 0.179081 GCCATGTACTCCCTCCGTTC 60.179 60.000 0.00 0.00 0.00 3.95
544 844 0.464452 CCATGTACTCCCTCCGTTCC 59.536 60.000 0.00 0.00 0.00 3.62
545 845 1.191535 CATGTACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
546 846 1.553248 CATGTACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
547 847 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
548 848 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
549 849 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
550 850 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
551 851 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
552 852 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
553 853 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
554 854 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
555 855 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
556 856 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
557 857 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
558 858 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
559 859 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
560 860 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
561 861 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
562 862 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
563 863 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
564 864 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
565 865 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
566 866 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
567 867 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
568 868 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
569 869 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
606 906 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
607 907 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
608 908 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
609 909 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
610 910 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
611 911 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
612 912 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
613 913 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
614 914 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
615 915 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
616 916 4.778958 TCTATTTTGGAACGGAGGGAGTAA 59.221 41.667 0.00 0.00 0.00 2.24
617 917 3.412237 TTTTGGAACGGAGGGAGTAAG 57.588 47.619 0.00 0.00 0.00 2.34
618 918 2.314071 TTGGAACGGAGGGAGTAAGA 57.686 50.000 0.00 0.00 0.00 2.10
619 919 1.848652 TGGAACGGAGGGAGTAAGAG 58.151 55.000 0.00 0.00 0.00 2.85
620 920 1.356738 TGGAACGGAGGGAGTAAGAGA 59.643 52.381 0.00 0.00 0.00 3.10
621 921 2.024273 TGGAACGGAGGGAGTAAGAGAT 60.024 50.000 0.00 0.00 0.00 2.75
622 922 3.032459 GGAACGGAGGGAGTAAGAGATT 58.968 50.000 0.00 0.00 0.00 2.40
623 923 4.213513 GGAACGGAGGGAGTAAGAGATTA 58.786 47.826 0.00 0.00 0.00 1.75
624 924 4.037803 GGAACGGAGGGAGTAAGAGATTAC 59.962 50.000 0.00 0.00 0.00 1.89
625 925 3.564264 ACGGAGGGAGTAAGAGATTACC 58.436 50.000 0.00 0.00 0.00 2.85
626 926 2.553172 CGGAGGGAGTAAGAGATTACCG 59.447 54.545 0.00 0.00 0.00 4.02
627 927 2.892215 GGAGGGAGTAAGAGATTACCGG 59.108 54.545 0.00 0.00 0.00 5.28
628 928 2.892215 GAGGGAGTAAGAGATTACCGGG 59.108 54.545 6.32 0.00 0.00 5.73
629 929 1.969208 GGGAGTAAGAGATTACCGGGG 59.031 57.143 6.32 0.00 0.00 5.73
630 930 1.969208 GGAGTAAGAGATTACCGGGGG 59.031 57.143 6.32 0.00 0.00 5.40
631 931 2.675583 GAGTAAGAGATTACCGGGGGT 58.324 52.381 6.32 0.00 40.16 4.95
632 932 2.627221 GAGTAAGAGATTACCGGGGGTC 59.373 54.545 6.32 0.00 37.09 4.46
633 933 1.339291 GTAAGAGATTACCGGGGGTCG 59.661 57.143 6.32 0.00 37.09 4.79
634 934 0.325016 AAGAGATTACCGGGGGTCGT 60.325 55.000 6.32 0.00 37.09 4.34
635 935 0.325016 AGAGATTACCGGGGGTCGTT 60.325 55.000 6.32 0.00 37.09 3.85
636 936 0.538584 GAGATTACCGGGGGTCGTTT 59.461 55.000 6.32 0.00 37.09 3.60
637 937 0.986527 AGATTACCGGGGGTCGTTTT 59.013 50.000 6.32 0.00 37.09 2.43
638 938 1.065926 AGATTACCGGGGGTCGTTTTC 60.066 52.381 6.32 0.00 37.09 2.29
639 939 0.691904 ATTACCGGGGGTCGTTTTCA 59.308 50.000 6.32 0.00 37.09 2.69
640 940 0.250252 TTACCGGGGGTCGTTTTCAC 60.250 55.000 6.32 0.00 37.09 3.18
641 941 1.406065 TACCGGGGGTCGTTTTCACA 61.406 55.000 6.32 0.00 37.09 3.58
642 942 2.255881 CCGGGGGTCGTTTTCACAC 61.256 63.158 0.00 0.00 37.11 3.82
643 943 1.524165 CGGGGGTCGTTTTCACACA 60.524 57.895 0.00 0.00 0.00 3.72
644 944 1.096386 CGGGGGTCGTTTTCACACAA 61.096 55.000 0.00 0.00 0.00 3.33
645 945 0.666374 GGGGGTCGTTTTCACACAAG 59.334 55.000 0.00 0.00 0.00 3.16
646 946 1.385528 GGGGTCGTTTTCACACAAGT 58.614 50.000 0.00 0.00 0.00 3.16
648 948 1.064952 GGGTCGTTTTCACACAAGTGG 59.935 52.381 5.08 0.00 45.91 4.00
649 949 2.011222 GGTCGTTTTCACACAAGTGGA 58.989 47.619 5.08 0.00 45.91 4.02
650 950 2.616842 GGTCGTTTTCACACAAGTGGAT 59.383 45.455 5.08 0.00 45.91 3.41
651 951 3.548014 GGTCGTTTTCACACAAGTGGATG 60.548 47.826 5.08 0.00 45.91 3.51
652 952 3.311322 GTCGTTTTCACACAAGTGGATGA 59.689 43.478 5.08 0.00 45.91 2.92
653 953 3.942115 TCGTTTTCACACAAGTGGATGAA 59.058 39.130 5.08 3.95 45.91 2.57
654 954 4.035017 CGTTTTCACACAAGTGGATGAAC 58.965 43.478 5.08 4.04 45.91 3.18
655 955 4.359706 GTTTTCACACAAGTGGATGAACC 58.640 43.478 5.08 0.00 45.91 3.62
656 956 3.576078 TTCACACAAGTGGATGAACCT 57.424 42.857 5.08 0.00 45.91 3.50
657 957 3.126001 TCACACAAGTGGATGAACCTC 57.874 47.619 5.08 0.00 45.91 3.85
658 958 2.437651 TCACACAAGTGGATGAACCTCA 59.562 45.455 5.08 0.00 45.91 3.86
659 959 3.072915 TCACACAAGTGGATGAACCTCAT 59.927 43.478 5.08 0.00 45.91 2.90
666 966 3.362581 GATGAACCTCATCGCGGAA 57.637 52.632 6.13 0.00 43.11 4.30
667 967 1.651987 GATGAACCTCATCGCGGAAA 58.348 50.000 6.13 0.00 43.11 3.13
668 968 2.006888 GATGAACCTCATCGCGGAAAA 58.993 47.619 6.13 0.00 43.11 2.29
669 969 1.438651 TGAACCTCATCGCGGAAAAG 58.561 50.000 6.13 0.00 0.00 2.27
670 970 0.097150 GAACCTCATCGCGGAAAAGC 59.903 55.000 6.13 0.00 0.00 3.51
671 971 0.321653 AACCTCATCGCGGAAAAGCT 60.322 50.000 6.13 0.00 34.40 3.74
672 972 0.741221 ACCTCATCGCGGAAAAGCTC 60.741 55.000 6.13 0.00 34.40 4.09
673 973 1.432270 CCTCATCGCGGAAAAGCTCC 61.432 60.000 6.13 0.00 41.40 4.70
674 974 1.432270 CTCATCGCGGAAAAGCTCCC 61.432 60.000 6.13 0.00 41.87 4.30
675 975 1.745115 CATCGCGGAAAAGCTCCCA 60.745 57.895 6.13 0.00 41.87 4.37
676 976 1.450312 ATCGCGGAAAAGCTCCCAG 60.450 57.895 6.13 0.00 41.87 4.45
677 977 1.899437 ATCGCGGAAAAGCTCCCAGA 61.899 55.000 6.13 0.00 41.87 3.86
678 978 1.450312 CGCGGAAAAGCTCCCAGAT 60.450 57.895 0.00 0.00 41.87 2.90
679 979 0.179084 CGCGGAAAAGCTCCCAGATA 60.179 55.000 0.00 0.00 41.87 1.98
680 980 1.541233 CGCGGAAAAGCTCCCAGATAT 60.541 52.381 0.00 0.00 41.87 1.63
681 981 2.288825 CGCGGAAAAGCTCCCAGATATA 60.289 50.000 0.00 0.00 41.87 0.86
682 982 3.330267 GCGGAAAAGCTCCCAGATATAG 58.670 50.000 0.00 0.00 41.87 1.31
683 983 3.866449 GCGGAAAAGCTCCCAGATATAGG 60.866 52.174 0.00 0.00 41.87 2.57
685 985 3.653352 GGAAAAGCTCCCAGATATAGGGT 59.347 47.826 11.48 0.00 46.82 4.34
686 986 4.104897 GGAAAAGCTCCCAGATATAGGGTT 59.895 45.833 11.48 0.32 46.82 4.11
687 987 5.399152 GGAAAAGCTCCCAGATATAGGGTTT 60.399 44.000 11.48 5.90 46.82 3.27
688 988 5.734031 AAAGCTCCCAGATATAGGGTTTT 57.266 39.130 11.48 8.69 46.82 2.43
689 989 4.713792 AGCTCCCAGATATAGGGTTTTG 57.286 45.455 11.48 4.08 46.82 2.44
690 990 3.395941 AGCTCCCAGATATAGGGTTTTGG 59.604 47.826 11.48 0.00 46.82 3.28
691 991 3.138468 GCTCCCAGATATAGGGTTTTGGT 59.862 47.826 11.48 0.00 46.82 3.67
692 992 4.718961 CTCCCAGATATAGGGTTTTGGTG 58.281 47.826 11.48 0.00 46.82 4.17
693 993 4.376223 TCCCAGATATAGGGTTTTGGTGA 58.624 43.478 11.48 0.00 46.82 4.02
694 994 4.981647 TCCCAGATATAGGGTTTTGGTGAT 59.018 41.667 11.48 0.00 46.82 3.06
695 995 5.435041 TCCCAGATATAGGGTTTTGGTGATT 59.565 40.000 11.48 0.00 46.82 2.57
696 996 6.068498 TCCCAGATATAGGGTTTTGGTGATTT 60.068 38.462 11.48 0.00 46.82 2.17
697 997 7.129660 TCCCAGATATAGGGTTTTGGTGATTTA 59.870 37.037 11.48 0.00 46.82 1.40
698 998 7.950124 CCCAGATATAGGGTTTTGGTGATTTAT 59.050 37.037 4.81 0.00 41.61 1.40
714 1014 9.632807 TGGTGATTTATAATTAAAAGTGTGTGC 57.367 29.630 0.00 0.00 31.33 4.57
715 1015 9.083080 GGTGATTTATAATTAAAAGTGTGTGCC 57.917 33.333 0.00 0.00 31.33 5.01
716 1016 8.794406 GTGATTTATAATTAAAAGTGTGTGCCG 58.206 33.333 0.00 0.00 31.33 5.69
717 1017 7.486551 TGATTTATAATTAAAAGTGTGTGCCGC 59.513 33.333 0.00 0.00 31.33 6.53
718 1018 6.503589 TTATAATTAAAAGTGTGTGCCGCT 57.496 33.333 0.00 0.00 34.65 5.52
719 1019 3.726291 AATTAAAAGTGTGTGCCGCTT 57.274 38.095 0.00 0.00 45.73 4.68
722 1022 3.918544 AAGTGTGTGCCGCTTTGT 58.081 50.000 0.00 0.00 41.05 2.83
723 1023 2.188912 AAGTGTGTGCCGCTTTGTT 58.811 47.368 0.00 0.00 41.05 2.83
724 1024 0.530288 AAGTGTGTGCCGCTTTGTTT 59.470 45.000 0.00 0.00 41.05 2.83
725 1025 0.179140 AGTGTGTGCCGCTTTGTTTG 60.179 50.000 0.00 0.00 0.00 2.93
726 1026 1.518133 TGTGTGCCGCTTTGTTTGC 60.518 52.632 0.00 0.00 0.00 3.68
727 1027 2.105930 TGTGCCGCTTTGTTTGCC 59.894 55.556 0.00 0.00 0.00 4.52
728 1028 2.417097 GTGCCGCTTTGTTTGCCT 59.583 55.556 0.00 0.00 0.00 4.75
729 1029 1.661509 GTGCCGCTTTGTTTGCCTC 60.662 57.895 0.00 0.00 0.00 4.70
730 1030 2.049156 GCCGCTTTGTTTGCCTCC 60.049 61.111 0.00 0.00 0.00 4.30
731 1031 2.650778 CCGCTTTGTTTGCCTCCC 59.349 61.111 0.00 0.00 0.00 4.30
732 1032 1.903404 CCGCTTTGTTTGCCTCCCT 60.903 57.895 0.00 0.00 0.00 4.20
733 1033 1.463553 CCGCTTTGTTTGCCTCCCTT 61.464 55.000 0.00 0.00 0.00 3.95
734 1034 0.318955 CGCTTTGTTTGCCTCCCTTG 60.319 55.000 0.00 0.00 0.00 3.61
735 1035 0.033920 GCTTTGTTTGCCTCCCTTGG 59.966 55.000 0.00 0.00 0.00 3.61
736 1036 0.681175 CTTTGTTTGCCTCCCTTGGG 59.319 55.000 0.00 0.00 0.00 4.12
743 1043 4.872293 CCTCCCTTGGGCAAATGT 57.128 55.556 0.00 0.00 0.00 2.71
744 1044 2.279842 CCTCCCTTGGGCAAATGTG 58.720 57.895 0.00 0.00 0.00 3.21
745 1045 0.251742 CCTCCCTTGGGCAAATGTGA 60.252 55.000 0.00 0.00 0.00 3.58
746 1046 1.631405 CTCCCTTGGGCAAATGTGAA 58.369 50.000 0.00 0.00 0.00 3.18
747 1047 1.969923 CTCCCTTGGGCAAATGTGAAA 59.030 47.619 0.00 0.00 0.00 2.69
748 1048 2.368221 CTCCCTTGGGCAAATGTGAAAA 59.632 45.455 0.00 0.00 0.00 2.29
749 1049 2.103941 TCCCTTGGGCAAATGTGAAAAC 59.896 45.455 0.00 0.00 0.00 2.43
750 1050 2.158842 CCCTTGGGCAAATGTGAAAACA 60.159 45.455 0.00 0.00 0.00 2.83
751 1051 3.496515 CCCTTGGGCAAATGTGAAAACAT 60.497 43.478 0.00 0.00 0.00 2.71
752 1052 4.136051 CCTTGGGCAAATGTGAAAACATT 58.864 39.130 0.00 0.00 41.59 2.71
753 1053 5.303971 CCTTGGGCAAATGTGAAAACATTA 58.696 37.500 4.62 0.00 39.18 1.90
754 1054 5.179182 CCTTGGGCAAATGTGAAAACATTAC 59.821 40.000 4.62 1.36 39.18 1.89
755 1055 5.543507 TGGGCAAATGTGAAAACATTACT 57.456 34.783 4.62 0.00 39.18 2.24
756 1056 6.656632 TGGGCAAATGTGAAAACATTACTA 57.343 33.333 4.62 0.00 39.18 1.82
757 1057 6.451393 TGGGCAAATGTGAAAACATTACTAC 58.549 36.000 4.62 0.00 39.18 2.73
758 1058 6.266558 TGGGCAAATGTGAAAACATTACTACT 59.733 34.615 4.62 0.00 39.18 2.57
759 1059 6.806739 GGGCAAATGTGAAAACATTACTACTC 59.193 38.462 4.62 0.00 39.18 2.59
760 1060 6.806739 GGCAAATGTGAAAACATTACTACTCC 59.193 38.462 4.62 0.00 39.18 3.85
761 1061 7.367285 GCAAATGTGAAAACATTACTACTCCA 58.633 34.615 4.62 0.00 39.18 3.86
762 1062 8.028938 GCAAATGTGAAAACATTACTACTCCAT 58.971 33.333 4.62 0.00 39.18 3.41
763 1063 9.912634 CAAATGTGAAAACATTACTACTCCATT 57.087 29.630 4.62 0.00 39.18 3.16
764 1064 9.912634 AAATGTGAAAACATTACTACTCCATTG 57.087 29.630 4.62 0.00 39.18 2.82
765 1065 6.908825 TGTGAAAACATTACTACTCCATTGC 58.091 36.000 0.00 0.00 0.00 3.56
785 1085 0.250684 TGCAAAAGGGATCGCTCACA 60.251 50.000 13.33 6.35 0.00 3.58
788 1088 2.733227 GCAAAAGGGATCGCTCACATTG 60.733 50.000 13.33 15.35 30.95 2.82
789 1089 2.749076 CAAAAGGGATCGCTCACATTGA 59.251 45.455 13.33 0.00 29.87 2.57
790 1090 2.029838 AAGGGATCGCTCACATTGAC 57.970 50.000 13.33 0.00 0.00 3.18
791 1091 0.904649 AGGGATCGCTCACATTGACA 59.095 50.000 6.44 0.00 0.00 3.58
792 1092 1.487976 AGGGATCGCTCACATTGACAT 59.512 47.619 6.44 0.00 0.00 3.06
793 1093 2.092753 AGGGATCGCTCACATTGACATT 60.093 45.455 6.44 0.00 0.00 2.71
795 1095 3.248602 GGGATCGCTCACATTGACATTAC 59.751 47.826 1.84 0.00 0.00 1.89
796 1096 4.122776 GGATCGCTCACATTGACATTACT 58.877 43.478 0.00 0.00 0.00 2.24
797 1097 4.210120 GGATCGCTCACATTGACATTACTC 59.790 45.833 0.00 0.00 0.00 2.59
799 1099 3.195610 TCGCTCACATTGACATTACTCCT 59.804 43.478 0.00 0.00 0.00 3.69
800 1100 4.401202 TCGCTCACATTGACATTACTCCTA 59.599 41.667 0.00 0.00 0.00 2.94
801 1101 5.069119 TCGCTCACATTGACATTACTCCTAT 59.931 40.000 0.00 0.00 0.00 2.57
815 1115 2.570752 ACTCCTATATGGCAGCATGAGG 59.429 50.000 0.00 0.00 38.34 3.86
857 1157 1.391157 GCAGCCTGGGTTGAACAACA 61.391 55.000 17.43 0.00 42.85 3.33
877 1194 4.078516 GGACTGGACCGTTCCCCG 62.079 72.222 0.00 0.00 42.01 5.73
886 1203 4.697756 CGTTCCCCGCCAAGCAGA 62.698 66.667 0.00 0.00 0.00 4.26
887 1204 2.282180 GTTCCCCGCCAAGCAGAA 60.282 61.111 0.00 0.00 0.00 3.02
888 1205 2.034066 TTCCCCGCCAAGCAGAAG 59.966 61.111 0.00 0.00 0.00 2.85
889 1206 4.722700 TCCCCGCCAAGCAGAAGC 62.723 66.667 0.00 0.00 42.56 3.86
891 1208 3.437795 CCCGCCAAGCAGAAGCAG 61.438 66.667 0.00 0.00 45.49 4.24
892 1209 2.359107 CCGCCAAGCAGAAGCAGA 60.359 61.111 0.00 0.00 45.49 4.26
893 1210 1.968017 CCGCCAAGCAGAAGCAGAA 60.968 57.895 0.00 0.00 45.49 3.02
894 1211 1.500844 CGCCAAGCAGAAGCAGAAG 59.499 57.895 0.00 0.00 45.49 2.85
895 1212 1.212229 GCCAAGCAGAAGCAGAAGC 59.788 57.895 0.00 0.00 45.49 3.86
896 1213 1.521450 GCCAAGCAGAAGCAGAAGCA 61.521 55.000 0.00 0.00 45.49 3.91
897 1214 0.522180 CCAAGCAGAAGCAGAAGCAG 59.478 55.000 0.00 0.00 45.49 4.24
909 1226 1.823041 GAAGCAGAGCAGCCATCCC 60.823 63.158 0.00 0.00 34.23 3.85
956 1273 4.129148 GCCAAATCTCCCCGGCCT 62.129 66.667 0.00 0.00 38.67 5.19
958 1275 2.378634 CCAAATCTCCCCGGCCTCT 61.379 63.158 0.00 0.00 0.00 3.69
1035 1352 1.614824 CTCCCTCCTCACCCAGCTT 60.615 63.158 0.00 0.00 0.00 3.74
1083 1406 2.046892 CACCTCCACCGCCTCTTG 60.047 66.667 0.00 0.00 0.00 3.02
1118 1447 1.301954 CCGTTTCCCCCAACCCTAG 59.698 63.158 0.00 0.00 0.00 3.02
1496 1831 4.888325 CCTCCTCCGGGCCCTCAT 62.888 72.222 22.43 0.00 0.00 2.90
1520 1855 2.177734 GAACCCCTACCTTCTCTCGTT 58.822 52.381 0.00 0.00 0.00 3.85
1632 1967 1.634757 CGCGCATGCTCACCACTAAA 61.635 55.000 17.13 0.00 39.65 1.85
1675 2010 0.793104 GGCACGCGCTCAAAACATAC 60.793 55.000 5.73 0.00 38.60 2.39
1770 2105 5.575019 GCAGCTAGAGTAGACTACTTGAAC 58.425 45.833 16.24 7.41 39.59 3.18
1827 2162 2.302733 TGCTGTGTCTAAAGCTCCATCA 59.697 45.455 0.00 0.00 40.21 3.07
1987 2322 7.386848 GGTACTATGCTGTAAAGTTTCTCAACA 59.613 37.037 0.00 0.00 35.05 3.33
2116 2451 5.069648 CACCTCCAAGAAGACTATGATGCTA 59.930 44.000 0.00 0.00 0.00 3.49
2178 2514 3.539604 AGCCAAGAACAGACTATGATGC 58.460 45.455 0.00 0.00 0.00 3.91
2184 2688 6.094464 CCAAGAACAGACTATGATGCAATTGA 59.906 38.462 10.34 0.00 0.00 2.57
2227 2731 1.574702 GCTGGGTTGGTCGTTGCTAC 61.575 60.000 0.00 0.00 0.00 3.58
2286 2790 6.325028 ACTGGTATGTAATGCTATCACTCAGT 59.675 38.462 0.00 0.00 0.00 3.41
2355 2861 6.224584 TCATGTTTTAGACACACGTAATGGA 58.775 36.000 4.21 0.00 42.04 3.41
2356 2862 6.706716 TCATGTTTTAGACACACGTAATGGAA 59.293 34.615 4.21 0.00 42.04 3.53
2357 2863 6.289745 TGTTTTAGACACACGTAATGGAAC 57.710 37.500 4.21 2.45 32.00 3.62
2358 2864 6.050432 TGTTTTAGACACACGTAATGGAACT 58.950 36.000 4.21 3.47 32.00 3.01
2359 2865 7.208777 TGTTTTAGACACACGTAATGGAACTA 58.791 34.615 4.21 2.71 32.00 2.24
2360 2866 7.710044 TGTTTTAGACACACGTAATGGAACTAA 59.290 33.333 4.21 7.36 32.00 2.24
2361 2867 7.642071 TTTAGACACACGTAATGGAACTAAC 57.358 36.000 4.21 0.00 0.00 2.34
2362 2868 5.464030 AGACACACGTAATGGAACTAACT 57.536 39.130 4.21 0.00 0.00 2.24
2363 2869 5.467705 AGACACACGTAATGGAACTAACTC 58.532 41.667 4.21 0.00 0.00 3.01
2433 2979 6.509418 TTCAGTTTTTGAGTTAGTTGCTGT 57.491 33.333 0.00 0.00 37.07 4.40
2539 3141 2.564504 AGTACCTACTCCGTCCCAAAAC 59.435 50.000 0.00 0.00 0.00 2.43
3011 3717 4.537433 GGAGCGCGGAGGAGCAAT 62.537 66.667 8.83 0.00 41.93 3.56
3163 3870 2.663196 GGGGAACGAGTGGAGTGG 59.337 66.667 0.00 0.00 0.00 4.00
3164 3871 2.663196 GGGAACGAGTGGAGTGGG 59.337 66.667 0.00 0.00 0.00 4.61
3165 3872 2.214920 GGGAACGAGTGGAGTGGGT 61.215 63.158 0.00 0.00 0.00 4.51
3166 3873 1.752833 GGAACGAGTGGAGTGGGTT 59.247 57.895 0.00 0.00 0.00 4.11
3167 3874 0.320508 GGAACGAGTGGAGTGGGTTC 60.321 60.000 0.00 0.00 37.00 3.62
3168 3875 0.680061 GAACGAGTGGAGTGGGTTCT 59.320 55.000 0.00 0.00 35.36 3.01
3169 3876 1.891150 GAACGAGTGGAGTGGGTTCTA 59.109 52.381 0.00 0.00 35.36 2.10
3170 3877 1.546961 ACGAGTGGAGTGGGTTCTAG 58.453 55.000 0.00 0.00 0.00 2.43
3171 3878 1.203025 ACGAGTGGAGTGGGTTCTAGT 60.203 52.381 0.00 0.00 0.00 2.57
3172 3879 1.473278 CGAGTGGAGTGGGTTCTAGTC 59.527 57.143 0.00 0.00 0.00 2.59
3173 3880 1.826096 GAGTGGAGTGGGTTCTAGTCC 59.174 57.143 0.00 0.00 38.01 3.85
3174 3881 0.531200 GTGGAGTGGGTTCTAGTCCG 59.469 60.000 0.00 0.00 39.94 4.79
3175 3882 0.113776 TGGAGTGGGTTCTAGTCCGT 59.886 55.000 0.00 0.00 39.94 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.990060 GTACAGGGGAGGAGCTGCA 60.990 63.158 8.35 0.00 0.00 4.41
44 45 0.905357 CTTCCCAGGGACAGTACAGG 59.095 60.000 8.12 0.00 0.00 4.00
46 47 2.158219 TCTTCTTCCCAGGGACAGTACA 60.158 50.000 8.12 0.00 0.00 2.90
47 48 2.234168 GTCTTCTTCCCAGGGACAGTAC 59.766 54.545 8.12 0.00 0.00 2.73
93 94 3.062042 GTGGGGTTATAAATAGGTCGCG 58.938 50.000 0.00 0.00 0.00 5.87
110 111 0.882042 GCATCGAGCTATGGTGTGGG 60.882 60.000 0.00 0.00 41.15 4.61
123 124 1.588824 CTGCTTTTGCCCTGCATCGA 61.589 55.000 0.00 0.00 46.87 3.59
126 127 1.180029 CTACTGCTTTTGCCCTGCAT 58.820 50.000 0.00 0.00 46.87 3.96
131 142 0.675522 TACCGCTACTGCTTTTGCCC 60.676 55.000 0.00 0.00 46.87 5.36
134 145 1.201921 CGCTTACCGCTACTGCTTTTG 60.202 52.381 0.00 0.00 36.97 2.44
141 152 1.252904 TTCCACCGCTTACCGCTACT 61.253 55.000 0.00 0.00 36.13 2.57
159 457 1.476891 TCGTGCCTCGCTCTAGAAATT 59.523 47.619 0.00 0.00 39.67 1.82
187 485 6.432107 GTGACGCTTTTACAGTTTATTCCAA 58.568 36.000 0.00 0.00 0.00 3.53
208 506 0.322187 TCGGTGTCTCTGATCGGTGA 60.322 55.000 0.42 1.33 0.00 4.02
215 513 2.239400 ACATGTTCTCGGTGTCTCTGA 58.761 47.619 0.00 0.00 0.00 3.27
218 516 4.640789 ATCTACATGTTCTCGGTGTCTC 57.359 45.455 2.30 0.00 0.00 3.36
253 551 0.249868 CAAGAGAGACAACGGTGCCA 60.250 55.000 0.00 0.00 0.00 4.92
261 560 3.005791 TGATCTTGCGACAAGAGAGACAA 59.994 43.478 21.13 3.90 0.00 3.18
290 589 4.058124 TCCTTTGTCGATATATGTGCTGC 58.942 43.478 0.00 0.00 0.00 5.25
291 590 5.523552 TGTTCCTTTGTCGATATATGTGCTG 59.476 40.000 0.00 0.00 0.00 4.41
292 591 5.670485 TGTTCCTTTGTCGATATATGTGCT 58.330 37.500 0.00 0.00 0.00 4.40
293 592 5.984233 TGTTCCTTTGTCGATATATGTGC 57.016 39.130 0.00 0.00 0.00 4.57
294 593 6.365839 GCATGTTCCTTTGTCGATATATGTG 58.634 40.000 0.00 0.00 0.00 3.21
295 594 5.177511 CGCATGTTCCTTTGTCGATATATGT 59.822 40.000 0.00 0.00 0.00 2.29
296 595 5.611919 CGCATGTTCCTTTGTCGATATATG 58.388 41.667 0.00 0.00 0.00 1.78
297 596 4.152402 GCGCATGTTCCTTTGTCGATATAT 59.848 41.667 0.30 0.00 0.00 0.86
298 597 3.493129 GCGCATGTTCCTTTGTCGATATA 59.507 43.478 0.30 0.00 0.00 0.86
299 598 2.287915 GCGCATGTTCCTTTGTCGATAT 59.712 45.455 0.30 0.00 0.00 1.63
300 599 1.663643 GCGCATGTTCCTTTGTCGATA 59.336 47.619 0.30 0.00 0.00 2.92
301 600 0.447801 GCGCATGTTCCTTTGTCGAT 59.552 50.000 0.30 0.00 0.00 3.59
302 601 0.882484 TGCGCATGTTCCTTTGTCGA 60.882 50.000 5.66 0.00 0.00 4.20
303 602 0.040514 TTGCGCATGTTCCTTTGTCG 60.041 50.000 12.75 0.00 0.00 4.35
304 603 1.408422 GTTGCGCATGTTCCTTTGTC 58.592 50.000 12.75 0.00 0.00 3.18
305 604 0.031994 GGTTGCGCATGTTCCTTTGT 59.968 50.000 12.75 0.00 0.00 2.83
306 605 0.667184 GGGTTGCGCATGTTCCTTTG 60.667 55.000 12.75 0.00 0.00 2.77
310 609 1.032014 ATATGGGTTGCGCATGTTCC 58.968 50.000 12.75 11.78 37.58 3.62
319 618 2.363788 TCGATCGCTATATGGGTTGC 57.636 50.000 11.09 0.00 0.00 4.17
322 621 1.204941 GGCTTCGATCGCTATATGGGT 59.795 52.381 11.09 0.00 0.00 4.51
327 626 1.269723 CTGTGGGCTTCGATCGCTATA 59.730 52.381 11.09 0.00 0.00 1.31
331 630 1.424493 CTTCTGTGGGCTTCGATCGC 61.424 60.000 11.09 0.00 0.00 4.58
332 631 0.173481 TCTTCTGTGGGCTTCGATCG 59.827 55.000 9.36 9.36 0.00 3.69
353 653 2.229784 TCCGAGGTTTCTTCCGTCTTAC 59.770 50.000 0.00 0.00 0.00 2.34
372 672 2.434359 CCGTTGACCTCGCCTTCC 60.434 66.667 0.00 0.00 0.00 3.46
373 673 2.434359 CCCGTTGACCTCGCCTTC 60.434 66.667 0.00 0.00 0.00 3.46
393 693 3.612247 GATGTCTGTGGGCCAGCGT 62.612 63.158 6.40 0.00 41.25 5.07
460 760 6.157904 TGGTGAACGTAGATCGACATTAAAA 58.842 36.000 6.77 0.00 42.86 1.52
466 766 1.471287 CCTGGTGAACGTAGATCGACA 59.529 52.381 6.77 0.00 42.86 4.35
468 768 0.454600 GCCTGGTGAACGTAGATCGA 59.545 55.000 0.00 0.00 42.86 3.59
477 777 2.488153 GGTGTAGAATTGCCTGGTGAAC 59.512 50.000 0.00 0.00 0.00 3.18
479 779 1.338674 CGGTGTAGAATTGCCTGGTGA 60.339 52.381 0.00 0.00 0.00 4.02
483 783 1.464608 CACACGGTGTAGAATTGCCTG 59.535 52.381 14.30 0.00 0.00 4.85
487 787 1.732259 GGAGCACACGGTGTAGAATTG 59.268 52.381 14.30 1.51 35.75 2.32
514 814 3.267483 GGAGTACATGGCACGTGTATTT 58.733 45.455 18.38 7.97 34.83 1.40
525 825 0.464452 GGAACGGAGGGAGTACATGG 59.536 60.000 0.00 0.00 0.00 3.66
528 828 1.719529 TTTGGAACGGAGGGAGTACA 58.280 50.000 0.00 0.00 0.00 2.90
529 829 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
530 830 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
531 831 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
532 832 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
533 833 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
534 834 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
535 835 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
536 836 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
537 837 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
538 838 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
539 839 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
540 840 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
541 841 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
542 842 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
543 843 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
580 880 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
581 881 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
582 882 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
583 883 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
584 884 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
585 885 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
586 886 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
587 887 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
588 888 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
589 889 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
590 890 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
591 891 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
592 892 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
593 893 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
594 894 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
595 895 4.778958 TCTTACTCCCTCCGTTCCAAAATA 59.221 41.667 0.00 0.00 0.00 1.40
596 896 3.585732 TCTTACTCCCTCCGTTCCAAAAT 59.414 43.478 0.00 0.00 0.00 1.82
597 897 2.974099 TCTTACTCCCTCCGTTCCAAAA 59.026 45.455 0.00 0.00 0.00 2.44
598 898 2.565834 CTCTTACTCCCTCCGTTCCAAA 59.434 50.000 0.00 0.00 0.00 3.28
599 899 2.176889 CTCTTACTCCCTCCGTTCCAA 58.823 52.381 0.00 0.00 0.00 3.53
600 900 1.356738 TCTCTTACTCCCTCCGTTCCA 59.643 52.381 0.00 0.00 0.00 3.53
601 901 2.140839 TCTCTTACTCCCTCCGTTCC 57.859 55.000 0.00 0.00 0.00 3.62
602 902 4.037803 GGTAATCTCTTACTCCCTCCGTTC 59.962 50.000 0.00 0.00 37.86 3.95
603 903 3.959449 GGTAATCTCTTACTCCCTCCGTT 59.041 47.826 0.00 0.00 37.86 4.44
604 904 3.564264 GGTAATCTCTTACTCCCTCCGT 58.436 50.000 0.00 0.00 37.86 4.69
605 905 2.553172 CGGTAATCTCTTACTCCCTCCG 59.447 54.545 0.00 0.00 37.86 4.63
606 906 2.892215 CCGGTAATCTCTTACTCCCTCC 59.108 54.545 0.00 0.00 37.86 4.30
607 907 2.892215 CCCGGTAATCTCTTACTCCCTC 59.108 54.545 0.00 0.00 37.86 4.30
608 908 2.425975 CCCCGGTAATCTCTTACTCCCT 60.426 54.545 0.00 0.00 37.86 4.20
609 909 1.969208 CCCCGGTAATCTCTTACTCCC 59.031 57.143 0.00 0.00 37.86 4.30
610 910 1.969208 CCCCCGGTAATCTCTTACTCC 59.031 57.143 0.00 0.00 37.86 3.85
611 911 2.627221 GACCCCCGGTAATCTCTTACTC 59.373 54.545 0.00 0.00 37.86 2.59
612 912 2.675583 GACCCCCGGTAATCTCTTACT 58.324 52.381 0.00 0.00 37.86 2.24
613 913 1.339291 CGACCCCCGGTAATCTCTTAC 59.661 57.143 0.00 0.00 35.25 2.34
614 914 1.063717 ACGACCCCCGGTAATCTCTTA 60.064 52.381 0.00 0.00 43.93 2.10
615 915 0.325016 ACGACCCCCGGTAATCTCTT 60.325 55.000 0.00 0.00 43.93 2.85
616 916 0.325016 AACGACCCCCGGTAATCTCT 60.325 55.000 0.00 0.00 43.93 3.10
617 917 0.538584 AAACGACCCCCGGTAATCTC 59.461 55.000 0.00 0.00 43.93 2.75
618 918 0.986527 AAAACGACCCCCGGTAATCT 59.013 50.000 0.00 0.00 43.93 2.40
619 919 1.338960 TGAAAACGACCCCCGGTAATC 60.339 52.381 0.00 0.00 43.93 1.75
620 920 0.691904 TGAAAACGACCCCCGGTAAT 59.308 50.000 0.00 0.00 43.93 1.89
621 921 0.250252 GTGAAAACGACCCCCGGTAA 60.250 55.000 0.00 0.00 43.93 2.85
622 922 1.370810 GTGAAAACGACCCCCGGTA 59.629 57.895 0.00 0.00 43.93 4.02
623 923 2.111669 GTGAAAACGACCCCCGGT 59.888 61.111 0.00 0.00 43.93 5.28
624 924 2.111460 TGTGAAAACGACCCCCGG 59.889 61.111 0.00 0.00 43.93 5.73
625 925 1.096386 TTGTGTGAAAACGACCCCCG 61.096 55.000 0.00 0.00 45.44 5.73
626 926 0.666374 CTTGTGTGAAAACGACCCCC 59.334 55.000 0.00 0.00 0.00 5.40
627 927 1.064952 CACTTGTGTGAAAACGACCCC 59.935 52.381 0.00 0.00 46.55 4.95
628 928 1.064952 CCACTTGTGTGAAAACGACCC 59.935 52.381 0.00 0.00 46.55 4.46
629 929 2.011222 TCCACTTGTGTGAAAACGACC 58.989 47.619 0.00 0.00 46.55 4.79
630 930 3.311322 TCATCCACTTGTGTGAAAACGAC 59.689 43.478 0.00 0.00 46.55 4.34
631 931 3.536570 TCATCCACTTGTGTGAAAACGA 58.463 40.909 0.00 0.00 46.55 3.85
632 932 3.961477 TCATCCACTTGTGTGAAAACG 57.039 42.857 0.00 0.00 46.55 3.60
633 933 4.097892 AGGTTCATCCACTTGTGTGAAAAC 59.902 41.667 7.91 8.87 46.55 2.43
634 934 4.277476 AGGTTCATCCACTTGTGTGAAAA 58.723 39.130 7.91 0.36 46.55 2.29
635 935 3.882888 GAGGTTCATCCACTTGTGTGAAA 59.117 43.478 7.91 0.00 46.55 2.69
636 936 3.118075 TGAGGTTCATCCACTTGTGTGAA 60.118 43.478 0.00 2.05 46.55 3.18
637 937 2.437651 TGAGGTTCATCCACTTGTGTGA 59.562 45.455 0.00 0.00 46.55 3.58
638 938 2.849942 TGAGGTTCATCCACTTGTGTG 58.150 47.619 0.00 0.00 43.45 3.82
639 939 3.679389 GATGAGGTTCATCCACTTGTGT 58.321 45.455 7.65 0.00 45.66 3.72
649 949 2.009774 CTTTTCCGCGATGAGGTTCAT 58.990 47.619 8.23 0.00 40.34 2.57
650 950 1.438651 CTTTTCCGCGATGAGGTTCA 58.561 50.000 8.23 0.00 0.00 3.18
651 951 0.097150 GCTTTTCCGCGATGAGGTTC 59.903 55.000 8.23 0.00 0.00 3.62
652 952 0.321653 AGCTTTTCCGCGATGAGGTT 60.322 50.000 8.23 0.00 34.40 3.50
653 953 0.741221 GAGCTTTTCCGCGATGAGGT 60.741 55.000 8.23 5.34 34.40 3.85
654 954 1.432270 GGAGCTTTTCCGCGATGAGG 61.432 60.000 8.23 0.00 35.91 3.86
655 955 2.009888 GGAGCTTTTCCGCGATGAG 58.990 57.895 8.23 0.48 35.91 2.90
656 956 4.201951 GGAGCTTTTCCGCGATGA 57.798 55.556 8.23 0.00 35.91 2.92
673 973 8.940397 ATAAATCACCAAAACCCTATATCTGG 57.060 34.615 0.00 0.00 0.00 3.86
688 988 9.632807 GCACACACTTTTAATTATAAATCACCA 57.367 29.630 0.00 0.00 31.33 4.17
689 989 9.083080 GGCACACACTTTTAATTATAAATCACC 57.917 33.333 0.00 0.00 31.33 4.02
690 990 8.794406 CGGCACACACTTTTAATTATAAATCAC 58.206 33.333 0.00 0.00 31.33 3.06
691 991 7.486551 GCGGCACACACTTTTAATTATAAATCA 59.513 33.333 0.00 0.00 31.33 2.57
692 992 7.700656 AGCGGCACACACTTTTAATTATAAATC 59.299 33.333 1.45 0.00 31.33 2.17
693 993 7.543756 AGCGGCACACACTTTTAATTATAAAT 58.456 30.769 1.45 0.00 31.33 1.40
694 994 6.915349 AGCGGCACACACTTTTAATTATAAA 58.085 32.000 1.45 0.00 0.00 1.40
695 995 6.503589 AGCGGCACACACTTTTAATTATAA 57.496 33.333 1.45 0.00 0.00 0.98
696 996 6.503589 AAGCGGCACACACTTTTAATTATA 57.496 33.333 1.45 0.00 0.00 0.98
697 997 5.385509 AAGCGGCACACACTTTTAATTAT 57.614 34.783 1.45 0.00 0.00 1.28
698 998 4.839668 AAGCGGCACACACTTTTAATTA 57.160 36.364 1.45 0.00 0.00 1.40
699 999 3.726291 AAGCGGCACACACTTTTAATT 57.274 38.095 1.45 0.00 0.00 1.40
700 1000 3.181480 ACAAAGCGGCACACACTTTTAAT 60.181 39.130 1.45 0.00 31.43 1.40
701 1001 2.164624 ACAAAGCGGCACACACTTTTAA 59.835 40.909 1.45 0.00 31.43 1.52
702 1002 1.746220 ACAAAGCGGCACACACTTTTA 59.254 42.857 1.45 0.00 31.43 1.52
703 1003 0.530288 ACAAAGCGGCACACACTTTT 59.470 45.000 1.45 0.00 31.43 2.27
704 1004 0.530288 AACAAAGCGGCACACACTTT 59.470 45.000 1.45 0.00 34.03 2.66
705 1005 0.530288 AAACAAAGCGGCACACACTT 59.470 45.000 1.45 0.00 0.00 3.16
706 1006 0.179140 CAAACAAAGCGGCACACACT 60.179 50.000 1.45 0.00 0.00 3.55
707 1007 1.751536 GCAAACAAAGCGGCACACAC 61.752 55.000 1.45 0.00 0.00 3.82
708 1008 1.518133 GCAAACAAAGCGGCACACA 60.518 52.632 1.45 0.00 0.00 3.72
709 1009 2.237066 GGCAAACAAAGCGGCACAC 61.237 57.895 1.45 0.00 0.00 3.82
710 1010 2.105930 GGCAAACAAAGCGGCACA 59.894 55.556 1.45 0.00 0.00 4.57
711 1011 1.661509 GAGGCAAACAAAGCGGCAC 60.662 57.895 1.45 0.00 0.00 5.01
712 1012 2.727544 GAGGCAAACAAAGCGGCA 59.272 55.556 1.45 0.00 0.00 5.69
713 1013 2.049156 GGAGGCAAACAAAGCGGC 60.049 61.111 0.00 0.00 0.00 6.53
714 1014 1.463553 AAGGGAGGCAAACAAAGCGG 61.464 55.000 0.00 0.00 0.00 5.52
715 1015 0.318955 CAAGGGAGGCAAACAAAGCG 60.319 55.000 0.00 0.00 0.00 4.68
716 1016 0.033920 CCAAGGGAGGCAAACAAAGC 59.966 55.000 0.00 0.00 0.00 3.51
717 1017 0.681175 CCCAAGGGAGGCAAACAAAG 59.319 55.000 0.00 0.00 37.50 2.77
718 1018 2.833244 CCCAAGGGAGGCAAACAAA 58.167 52.632 0.00 0.00 37.50 2.83
719 1019 4.617200 CCCAAGGGAGGCAAACAA 57.383 55.556 0.00 0.00 37.50 2.83
726 1026 0.251742 TCACATTTGCCCAAGGGAGG 60.252 55.000 9.92 0.00 37.50 4.30
727 1027 1.631405 TTCACATTTGCCCAAGGGAG 58.369 50.000 9.92 0.00 37.50 4.30
728 1028 2.094100 TTTCACATTTGCCCAAGGGA 57.906 45.000 9.92 0.00 37.50 4.20
729 1029 2.158842 TGTTTTCACATTTGCCCAAGGG 60.159 45.455 0.00 0.00 38.57 3.95
730 1030 3.191078 TGTTTTCACATTTGCCCAAGG 57.809 42.857 0.00 0.00 0.00 3.61
740 1040 7.394359 AGCAATGGAGTAGTAATGTTTTCACAT 59.606 33.333 0.00 0.00 46.34 3.21
741 1041 6.714810 AGCAATGGAGTAGTAATGTTTTCACA 59.285 34.615 0.00 0.00 37.31 3.58
742 1042 7.023575 CAGCAATGGAGTAGTAATGTTTTCAC 58.976 38.462 0.00 0.00 0.00 3.18
743 1043 6.349280 GCAGCAATGGAGTAGTAATGTTTTCA 60.349 38.462 0.00 0.00 0.00 2.69
744 1044 6.030228 GCAGCAATGGAGTAGTAATGTTTTC 58.970 40.000 0.00 0.00 0.00 2.29
745 1045 5.476599 TGCAGCAATGGAGTAGTAATGTTTT 59.523 36.000 0.00 0.00 0.00 2.43
746 1046 5.009631 TGCAGCAATGGAGTAGTAATGTTT 58.990 37.500 0.00 0.00 0.00 2.83
747 1047 4.588899 TGCAGCAATGGAGTAGTAATGTT 58.411 39.130 0.00 0.00 0.00 2.71
748 1048 4.220693 TGCAGCAATGGAGTAGTAATGT 57.779 40.909 0.00 0.00 0.00 2.71
749 1049 5.565592 TTTGCAGCAATGGAGTAGTAATG 57.434 39.130 9.12 0.00 0.00 1.90
750 1050 5.126061 CCTTTTGCAGCAATGGAGTAGTAAT 59.874 40.000 18.09 0.00 0.00 1.89
751 1051 4.458989 CCTTTTGCAGCAATGGAGTAGTAA 59.541 41.667 18.09 3.08 0.00 2.24
752 1052 4.009675 CCTTTTGCAGCAATGGAGTAGTA 58.990 43.478 18.09 0.00 0.00 1.82
753 1053 2.821969 CCTTTTGCAGCAATGGAGTAGT 59.178 45.455 18.09 0.00 0.00 2.73
754 1054 2.165030 CCCTTTTGCAGCAATGGAGTAG 59.835 50.000 22.41 9.05 0.00 2.57
755 1055 2.170166 CCCTTTTGCAGCAATGGAGTA 58.830 47.619 22.41 0.59 0.00 2.59
756 1056 0.971386 CCCTTTTGCAGCAATGGAGT 59.029 50.000 22.41 0.00 0.00 3.85
757 1057 1.259609 TCCCTTTTGCAGCAATGGAG 58.740 50.000 22.41 14.73 0.00 3.86
758 1058 1.826720 GATCCCTTTTGCAGCAATGGA 59.173 47.619 22.41 20.57 0.00 3.41
759 1059 1.470285 CGATCCCTTTTGCAGCAATGG 60.470 52.381 9.12 13.90 0.00 3.16
760 1060 1.917273 CGATCCCTTTTGCAGCAATG 58.083 50.000 9.12 5.20 0.00 2.82
761 1061 0.174162 GCGATCCCTTTTGCAGCAAT 59.826 50.000 9.12 0.00 0.00 3.56
762 1062 0.895100 AGCGATCCCTTTTGCAGCAA 60.895 50.000 2.83 2.83 0.00 3.91
763 1063 1.303561 AGCGATCCCTTTTGCAGCA 60.304 52.632 0.00 0.00 0.00 4.41
764 1064 1.308069 TGAGCGATCCCTTTTGCAGC 61.308 55.000 0.00 0.00 0.00 5.25
765 1065 0.449388 GTGAGCGATCCCTTTTGCAG 59.551 55.000 0.00 0.00 0.00 4.41
785 1085 6.176183 GCTGCCATATAGGAGTAATGTCAAT 58.824 40.000 0.00 0.00 41.22 2.57
788 1088 5.152623 TGCTGCCATATAGGAGTAATGTC 57.847 43.478 0.00 0.00 41.22 3.06
789 1089 5.249163 TCATGCTGCCATATAGGAGTAATGT 59.751 40.000 0.00 0.00 41.22 2.71
790 1090 5.737860 TCATGCTGCCATATAGGAGTAATG 58.262 41.667 0.00 0.00 41.22 1.90
791 1091 5.104610 CCTCATGCTGCCATATAGGAGTAAT 60.105 44.000 0.00 0.00 41.22 1.89
792 1092 4.223700 CCTCATGCTGCCATATAGGAGTAA 59.776 45.833 0.00 0.00 41.22 2.24
793 1093 3.771479 CCTCATGCTGCCATATAGGAGTA 59.229 47.826 0.00 0.00 41.22 2.59
795 1095 2.680221 GCCTCATGCTGCCATATAGGAG 60.680 54.545 0.00 0.00 36.55 3.69
796 1096 1.280133 GCCTCATGCTGCCATATAGGA 59.720 52.381 0.00 0.00 36.55 2.94
797 1097 1.747709 GCCTCATGCTGCCATATAGG 58.252 55.000 0.00 0.00 37.08 2.57
835 1135 3.506743 TTCAACCCAGGCTGCCCA 61.507 61.111 16.57 0.00 0.00 5.36
836 1136 2.991540 GTTCAACCCAGGCTGCCC 60.992 66.667 16.57 0.00 0.00 5.36
839 1139 0.385390 GTGTTGTTCAACCCAGGCTG 59.615 55.000 7.75 7.75 0.00 4.85
842 1142 1.032014 CCAGTGTTGTTCAACCCAGG 58.968 55.000 12.23 4.57 0.00 4.45
844 1144 1.283613 AGTCCAGTGTTGTTCAACCCA 59.716 47.619 12.23 0.00 0.00 4.51
845 1145 1.676006 CAGTCCAGTGTTGTTCAACCC 59.324 52.381 12.23 2.06 0.00 4.11
857 1157 3.468063 GGAACGGTCCAGTCCAGT 58.532 61.111 16.61 0.00 44.26 4.00
877 1194 1.212229 GCTTCTGCTTCTGCTTGGC 59.788 57.895 0.00 0.00 40.48 4.52
881 1198 0.674269 GCTCTGCTTCTGCTTCTGCT 60.674 55.000 0.00 0.00 40.48 4.24
882 1199 0.954449 TGCTCTGCTTCTGCTTCTGC 60.954 55.000 0.00 0.00 40.48 4.26
883 1200 1.080298 CTGCTCTGCTTCTGCTTCTG 58.920 55.000 0.00 0.00 40.48 3.02
884 1201 0.674269 GCTGCTCTGCTTCTGCTTCT 60.674 55.000 0.00 0.00 40.48 2.85
885 1202 1.646624 GGCTGCTCTGCTTCTGCTTC 61.647 60.000 0.00 0.00 40.48 3.86
886 1203 1.674980 GGCTGCTCTGCTTCTGCTT 60.675 57.895 0.00 0.00 40.48 3.91
887 1204 2.046120 GGCTGCTCTGCTTCTGCT 60.046 61.111 0.00 0.00 40.48 4.24
888 1205 1.716826 GATGGCTGCTCTGCTTCTGC 61.717 60.000 0.00 0.00 40.20 4.26
889 1206 1.096386 GGATGGCTGCTCTGCTTCTG 61.096 60.000 0.00 0.00 0.00 3.02
890 1207 1.224039 GGATGGCTGCTCTGCTTCT 59.776 57.895 0.00 0.00 0.00 2.85
891 1208 1.823041 GGGATGGCTGCTCTGCTTC 60.823 63.158 0.00 0.00 0.00 3.86
892 1209 2.274760 GGGATGGCTGCTCTGCTT 59.725 61.111 0.00 0.00 0.00 3.91
893 1210 3.806667 GGGGATGGCTGCTCTGCT 61.807 66.667 0.00 0.00 0.00 4.24
895 1212 3.335356 AACGGGGATGGCTGCTCTG 62.335 63.158 0.00 0.00 0.00 3.35
896 1213 3.011517 AACGGGGATGGCTGCTCT 61.012 61.111 0.00 0.00 0.00 4.09
897 1214 2.514824 GAACGGGGATGGCTGCTC 60.515 66.667 0.00 0.00 0.00 4.26
909 1226 2.189521 CGAGGGAATGGGGAACGG 59.810 66.667 0.00 0.00 0.00 4.44
911 1228 2.124278 GGCGAGGGAATGGGGAAC 60.124 66.667 0.00 0.00 0.00 3.62
939 1256 4.129148 AGGCCGGGGAGATTTGGC 62.129 66.667 2.18 0.00 46.82 4.52
940 1257 2.193248 GAGGCCGGGGAGATTTGG 59.807 66.667 2.18 0.00 0.00 3.28
941 1258 1.147153 GAGAGGCCGGGGAGATTTG 59.853 63.158 2.18 0.00 0.00 2.32
942 1259 2.073101 GGAGAGGCCGGGGAGATTT 61.073 63.158 2.18 0.00 0.00 2.17
943 1260 2.446802 GGAGAGGCCGGGGAGATT 60.447 66.667 2.18 0.00 0.00 2.40
1035 1352 1.527148 CGCGGAGGGAGATGAGAGA 60.527 63.158 0.00 0.00 46.37 3.10
1496 1831 1.722851 AGAGAAGGTAGGGGTTCCTCA 59.277 52.381 0.00 0.00 43.66 3.86
1546 1881 1.520174 CTCGTGCAGATAAGCGACATG 59.480 52.381 0.00 0.00 37.31 3.21
1632 1967 3.790437 CCCTGGATGCGCTCTGGT 61.790 66.667 9.73 0.00 0.00 4.00
1694 2029 3.422303 GCGCGTGCCTGAACATCA 61.422 61.111 10.56 0.00 33.98 3.07
1770 2105 1.300971 CCGACCACCTGAATGTGCTG 61.301 60.000 0.00 0.00 34.85 4.41
1827 2162 1.377725 CTTGGCCCTCGTCAGCATT 60.378 57.895 0.00 0.00 0.00 3.56
1960 2295 6.999950 TGAGAAACTTTACAGCATAGTACCA 58.000 36.000 0.00 0.00 0.00 3.25
1987 2322 2.288948 TGCGCTTGAGCAATCCATTTTT 60.289 40.909 9.73 0.00 45.06 1.94
2178 2514 5.049198 ACAGTCATACAACAGCAGTCAATTG 60.049 40.000 0.00 0.00 0.00 2.32
2184 2688 5.468540 TCTAACAGTCATACAACAGCAGT 57.531 39.130 0.00 0.00 0.00 4.40
2227 2731 6.794374 TCAAATTATCAATTCCATCACACGG 58.206 36.000 0.00 0.00 0.00 4.94
2355 2861 8.142551 CCTCACACTTACTTAGTTGAGTTAGTT 58.857 37.037 9.33 0.00 37.40 2.24
2356 2862 7.287235 ACCTCACACTTACTTAGTTGAGTTAGT 59.713 37.037 9.33 0.00 39.37 2.24
2357 2863 7.659186 ACCTCACACTTACTTAGTTGAGTTAG 58.341 38.462 9.33 1.99 38.70 2.34
2358 2864 7.286087 TGACCTCACACTTACTTAGTTGAGTTA 59.714 37.037 9.33 0.00 38.70 2.24
2359 2865 6.097839 TGACCTCACACTTACTTAGTTGAGTT 59.902 38.462 9.33 0.00 38.70 3.01
2360 2866 5.597182 TGACCTCACACTTACTTAGTTGAGT 59.403 40.000 9.33 3.53 38.70 3.41
2361 2867 6.085555 TGACCTCACACTTACTTAGTTGAG 57.914 41.667 4.52 4.52 39.32 3.02
2362 2868 5.010719 CCTGACCTCACACTTACTTAGTTGA 59.989 44.000 0.00 0.00 33.85 3.18
2363 2869 5.230942 CCTGACCTCACACTTACTTAGTTG 58.769 45.833 0.00 0.00 33.85 3.16
2433 2979 4.271661 TGTGGCTCATTATCTCAATGCAA 58.728 39.130 0.00 0.00 0.00 4.08
2444 2990 9.005806 TGAAGGATTCCATACTGTGGCTCATTA 62.006 40.741 5.29 0.00 46.93 1.90
3011 3717 0.033405 CCAACCCCTCTCGTCTCCTA 60.033 60.000 0.00 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.