Multiple sequence alignment - TraesCS5B01G377600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G377600 chr5B 100.000 5637 0 0 1 5637 555150211 555155847 0.000000e+00 10410
1 TraesCS5B01G377600 chr5B 80.000 575 77 25 4047 4605 51828135 51828687 1.900000e-104 390
2 TraesCS5B01G377600 chr5A 88.493 3372 243 75 657 3946 573587101 573590409 0.000000e+00 3943
3 TraesCS5B01G377600 chr5A 94.978 677 25 2 4029 4705 573590429 573591096 0.000000e+00 1053
4 TraesCS5B01G377600 chr5A 82.322 577 58 21 5084 5637 573592135 573592690 1.430000e-125 460
5 TraesCS5B01G377600 chr5A 79.860 571 85 21 4047 4605 38721063 38721615 1.900000e-104 390
6 TraesCS5B01G377600 chr5A 88.816 304 19 10 4751 5046 573591754 573592050 5.370000e-95 359
7 TraesCS5B01G377600 chr5A 86.441 118 3 2 436 553 573586936 573587040 3.570000e-22 117
8 TraesCS5B01G377600 chr5D 84.537 2645 217 97 1 2537 454178724 454181284 0.000000e+00 2442
9 TraesCS5B01G377600 chr5D 95.406 1393 50 9 2567 3946 454181279 454182670 0.000000e+00 2206
10 TraesCS5B01G377600 chr5D 94.428 1041 40 8 4012 5051 454182705 454183728 0.000000e+00 1585
11 TraesCS5B01G377600 chr5D 79.685 571 86 18 4047 4605 49102563 49103115 8.860000e-103 385
12 TraesCS5B01G377600 chr5D 86.742 264 16 8 5084 5338 454183809 454184062 5.560000e-70 276
13 TraesCS5B01G377600 chr5D 85.714 133 9 5 5513 5637 454185510 454185640 1.270000e-26 132
14 TraesCS5B01G377600 chr2B 89.062 384 40 2 3000 3382 735853400 735853782 5.110000e-130 475
15 TraesCS5B01G377600 chr2B 83.265 490 55 17 3262 3745 736211001 736211469 5.220000e-115 425
16 TraesCS5B01G377600 chr2B 83.957 374 33 9 1213 1582 630492353 630492703 3.250000e-87 333
17 TraesCS5B01G377600 chr2B 92.500 200 15 0 2749 2948 735882258 735882457 2.570000e-73 287
18 TraesCS5B01G377600 chr2B 91.500 200 16 1 2749 2948 735949770 735949968 2.000000e-69 274
19 TraesCS5B01G377600 chr2B 90.206 194 19 0 2749 2942 736119565 736119758 2.610000e-63 254
20 TraesCS5B01G377600 chr2B 81.529 314 41 10 2692 3002 735926334 735926633 5.640000e-60 243
21 TraesCS5B01G377600 chr2B 87.681 138 17 0 3374 3511 735854068 735854205 1.630000e-35 161
22 TraesCS5B01G377600 chr2B 90.909 99 9 0 2179 2277 736119469 736119567 3.540000e-27 134
23 TraesCS5B01G377600 chr2B 90.000 100 9 1 2179 2278 735949675 735949773 1.650000e-25 128
24 TraesCS5B01G377600 chr2A 84.805 487 48 10 3260 3745 737042298 737042759 3.080000e-127 466
25 TraesCS5B01G377600 chr2A 88.278 273 28 3 2749 3020 736968998 736969267 1.960000e-84 324
26 TraesCS5B01G377600 chr2A 93.000 100 7 0 2179 2278 736968902 736969001 4.550000e-31 147
27 TraesCS5B01G377600 chr2D 84.600 487 54 11 3260 3745 605653297 605653763 1.110000e-126 464
28 TraesCS5B01G377600 chr2D 86.387 382 47 5 3000 3380 605434135 605434512 4.060000e-111 412
29 TraesCS5B01G377600 chr2D 87.912 273 26 6 2749 3020 605635867 605636133 1.180000e-81 315
30 TraesCS5B01G377600 chr2D 90.000 200 19 1 2749 2948 605537158 605537356 2.020000e-64 257
31 TraesCS5B01G377600 chr2D 92.000 100 8 0 2179 2278 605635771 605635870 2.120000e-29 141
32 TraesCS5B01G377600 chr2D 92.000 100 7 1 2179 2278 605537063 605537161 7.620000e-29 139
33 TraesCS5B01G377600 chr1B 83.467 375 35 8 1212 1582 630222143 630222494 1.960000e-84 324
34 TraesCS5B01G377600 chr7B 82.933 375 37 10 1212 1582 711586756 711587107 4.240000e-81 313
35 TraesCS5B01G377600 chr7B 81.313 198 30 4 1449 1645 664084259 664084068 2.720000e-33 154
36 TraesCS5B01G377600 chr7D 77.128 376 75 10 4068 4436 387915721 387916092 2.060000e-49 207
37 TraesCS5B01G377600 chr7A 76.000 400 83 13 4068 4457 438144512 438144908 1.600000e-45 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G377600 chr5B 555150211 555155847 5636 False 10410.0 10410 100.0000 1 5637 1 chr5B.!!$F2 5636
1 TraesCS5B01G377600 chr5B 51828135 51828687 552 False 390.0 390 80.0000 4047 4605 1 chr5B.!!$F1 558
2 TraesCS5B01G377600 chr5A 573586936 573592690 5754 False 1186.4 3943 88.2100 436 5637 5 chr5A.!!$F2 5201
3 TraesCS5B01G377600 chr5A 38721063 38721615 552 False 390.0 390 79.8600 4047 4605 1 chr5A.!!$F1 558
4 TraesCS5B01G377600 chr5D 454178724 454185640 6916 False 1328.2 2442 89.3654 1 5637 5 chr5D.!!$F2 5636
5 TraesCS5B01G377600 chr5D 49102563 49103115 552 False 385.0 385 79.6850 4047 4605 1 chr5D.!!$F1 558
6 TraesCS5B01G377600 chr2B 735853400 735854205 805 False 318.0 475 88.3715 3000 3511 2 chr2B.!!$F5 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
556 603 0.035458 AACTGCCGTCTTCAAGGAGG 59.965 55.0 0.00 0.00 0.0 4.30 F
1186 1318 0.031515 TCTCCCTTGCCCGGATAGAA 60.032 55.0 0.73 0.00 0.0 2.10 F
1842 2011 0.387239 GTTGATTGCAGTTGACCGCC 60.387 55.0 0.00 0.00 0.0 6.13 F
2774 2999 0.663153 AAGTGCCGTTCTTGAACAGC 59.337 50.0 13.06 13.06 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1773 1934 0.817013 GTGCATAACACCCCACCATG 59.183 55.000 0.00 0.0 44.02 3.66 R
2779 3004 0.814457 CCTGGTCTGAACTCTCCTCG 59.186 60.000 0.00 0.0 0.00 4.63 R
3376 3601 0.530650 TGCTATTGCGCCTACTGAGC 60.531 55.000 4.18 5.9 43.34 4.26 R
4749 5318 1.748493 GGGACTCAAAACACTTGCACA 59.252 47.619 0.00 0.0 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.885494 ATATTTGCGCCATTACATTACATTTT 57.115 26.923 4.18 0.00 0.00 1.82
28 29 4.158579 TGCGCCATTACATTACATTTTCCA 59.841 37.500 4.18 0.00 0.00 3.53
31 32 6.257630 GCGCCATTACATTACATTTTCCATTT 59.742 34.615 0.00 0.00 0.00 2.32
60 63 7.957002 ACCACACAAGTATAGATAGATTCCTG 58.043 38.462 0.00 0.00 0.00 3.86
80 83 4.275936 CCTGCTCTAATTTATTTCCCACCG 59.724 45.833 0.00 0.00 0.00 4.94
92 95 4.025401 CCACCGTTTCCGCTGCAC 62.025 66.667 0.00 0.00 0.00 4.57
134 137 4.227134 CTGCAGGCCGCGGTATCT 62.227 66.667 28.70 18.68 46.97 1.98
135 138 2.835895 TGCAGGCCGCGGTATCTA 60.836 61.111 28.70 8.29 46.97 1.98
136 139 2.159819 CTGCAGGCCGCGGTATCTAT 62.160 60.000 28.70 3.40 46.97 1.98
137 140 1.004918 GCAGGCCGCGGTATCTATT 60.005 57.895 28.70 1.53 0.00 1.73
138 141 0.602905 GCAGGCCGCGGTATCTATTT 60.603 55.000 28.70 0.38 0.00 1.40
139 142 1.429463 CAGGCCGCGGTATCTATTTC 58.571 55.000 28.70 5.99 0.00 2.17
140 143 0.320697 AGGCCGCGGTATCTATTTCC 59.679 55.000 28.70 15.80 0.00 3.13
141 144 0.672711 GGCCGCGGTATCTATTTCCC 60.673 60.000 28.70 11.39 0.00 3.97
143 146 0.682852 CCGCGGTATCTATTTCCCCA 59.317 55.000 19.50 0.00 0.00 4.96
144 147 1.278127 CCGCGGTATCTATTTCCCCAT 59.722 52.381 19.50 0.00 0.00 4.00
145 148 2.346803 CGCGGTATCTATTTCCCCATG 58.653 52.381 0.00 0.00 0.00 3.66
146 149 2.289444 CGCGGTATCTATTTCCCCATGT 60.289 50.000 0.00 0.00 0.00 3.21
148 151 3.585862 CGGTATCTATTTCCCCATGTCG 58.414 50.000 0.00 0.00 0.00 4.35
166 169 6.692681 CCATGTCGACCAAATAATTGATTGAC 59.307 38.462 14.12 0.00 38.94 3.18
168 171 6.841119 TGTCGACCAAATAATTGATTGACAG 58.159 36.000 14.12 0.00 38.94 3.51
169 172 6.128035 TGTCGACCAAATAATTGATTGACAGG 60.128 38.462 14.12 0.00 38.94 4.00
170 173 6.093495 GTCGACCAAATAATTGATTGACAGGA 59.907 38.462 3.51 0.00 38.94 3.86
171 174 6.316140 TCGACCAAATAATTGATTGACAGGAG 59.684 38.462 6.61 0.00 38.94 3.69
181 184 8.579850 AATTGATTGACAGGAGTAATAAGCAA 57.420 30.769 0.00 0.00 31.17 3.91
207 210 1.228245 TTGACCTGCTGCCTTGTCC 60.228 57.895 0.00 0.00 0.00 4.02
210 214 3.655211 CCTGCTGCCTTGTCCCCT 61.655 66.667 0.00 0.00 0.00 4.79
215 219 3.264845 TGCCTTGTCCCCTTCCCC 61.265 66.667 0.00 0.00 0.00 4.81
235 239 3.608662 TCGTCTGGCCGTTCCGTT 61.609 61.111 0.00 0.00 37.80 4.44
246 250 1.620413 CGTTCCGTTTGACGCCTACC 61.620 60.000 0.00 0.00 40.91 3.18
274 280 6.223120 CAATTGACCCGATTCCTTTTTCTTT 58.777 36.000 0.00 0.00 0.00 2.52
280 286 4.767409 CCCGATTCCTTTTTCTTTCTCCTT 59.233 41.667 0.00 0.00 0.00 3.36
285 291 5.262588 TCCTTTTTCTTTCTCCTTGCAAC 57.737 39.130 0.00 0.00 0.00 4.17
286 292 4.709397 TCCTTTTTCTTTCTCCTTGCAACA 59.291 37.500 0.00 0.00 0.00 3.33
287 293 5.045872 CCTTTTTCTTTCTCCTTGCAACAG 58.954 41.667 0.00 0.00 0.00 3.16
303 309 3.694734 CAACAGCAAAACAATGTCGAGT 58.305 40.909 0.00 0.00 0.00 4.18
330 336 5.299148 CAATGAATTGCCACCAGAAAAAGA 58.701 37.500 0.00 0.00 0.00 2.52
382 392 2.357517 GCTGTCCCTGTGACCACG 60.358 66.667 0.00 0.00 43.78 4.94
387 397 3.314331 CCCTGTGACCACGAGCCT 61.314 66.667 0.00 0.00 0.00 4.58
388 398 1.982395 CCCTGTGACCACGAGCCTA 60.982 63.158 0.00 0.00 0.00 3.93
430 454 1.383456 AAAGAACAGCGCCAACTGCA 61.383 50.000 2.29 0.00 41.60 4.41
434 458 4.170062 CAGCGCCAACTGCATCCG 62.170 66.667 2.29 0.00 41.33 4.18
453 496 1.475213 CGCTCTCCCCCTAATCAAACC 60.475 57.143 0.00 0.00 0.00 3.27
454 497 1.847088 GCTCTCCCCCTAATCAAACCT 59.153 52.381 0.00 0.00 0.00 3.50
498 545 4.036734 CCACAAAAGCAGTTAAGCAGAGAA 59.963 41.667 0.00 0.00 36.85 2.87
507 554 5.410067 CAGTTAAGCAGAGAAAGAGAGAGG 58.590 45.833 0.00 0.00 0.00 3.69
510 557 0.829990 GCAGAGAAAGAGAGAGGGGG 59.170 60.000 0.00 0.00 0.00 5.40
556 603 0.035458 AACTGCCGTCTTCAAGGAGG 59.965 55.000 0.00 0.00 0.00 4.30
575 632 0.325203 GGAGAGAGAGAGCCCACCTT 60.325 60.000 0.00 0.00 0.00 3.50
581 638 0.474660 AGAGAGCCCACCTTCACCTT 60.475 55.000 0.00 0.00 0.00 3.50
582 639 0.035915 GAGAGCCCACCTTCACCTTC 60.036 60.000 0.00 0.00 0.00 3.46
583 640 0.768221 AGAGCCCACCTTCACCTTCA 60.768 55.000 0.00 0.00 0.00 3.02
584 641 0.606673 GAGCCCACCTTCACCTTCAC 60.607 60.000 0.00 0.00 0.00 3.18
585 642 1.603739 GCCCACCTTCACCTTCACC 60.604 63.158 0.00 0.00 0.00 4.02
586 643 2.069165 GCCCACCTTCACCTTCACCT 62.069 60.000 0.00 0.00 0.00 4.00
587 644 0.036875 CCCACCTTCACCTTCACCTC 59.963 60.000 0.00 0.00 0.00 3.85
588 645 0.036875 CCACCTTCACCTTCACCTCC 59.963 60.000 0.00 0.00 0.00 4.30
589 646 0.764890 CACCTTCACCTTCACCTCCA 59.235 55.000 0.00 0.00 0.00 3.86
590 647 0.765510 ACCTTCACCTTCACCTCCAC 59.234 55.000 0.00 0.00 0.00 4.02
591 648 0.036875 CCTTCACCTTCACCTCCACC 59.963 60.000 0.00 0.00 0.00 4.61
592 649 1.059913 CTTCACCTTCACCTCCACCT 58.940 55.000 0.00 0.00 0.00 4.00
593 650 1.421646 CTTCACCTTCACCTCCACCTT 59.578 52.381 0.00 0.00 0.00 3.50
594 651 1.056660 TCACCTTCACCTCCACCTTC 58.943 55.000 0.00 0.00 0.00 3.46
595 652 0.764890 CACCTTCACCTCCACCTTCA 59.235 55.000 0.00 0.00 0.00 3.02
629 701 2.829003 TACTCGCCTGCTCTCCCG 60.829 66.667 0.00 0.00 0.00 5.14
640 712 3.406595 CTCTCCCGACCCCCATTGC 62.407 68.421 0.00 0.00 0.00 3.56
841 950 4.760047 TCTTTCGCGGGGAGCTGC 62.760 66.667 6.13 0.00 45.59 5.25
868 980 2.715005 CAGCGAGAGAGCGAGAGG 59.285 66.667 0.00 0.00 43.00 3.69
871 983 2.542907 GCGAGAGAGCGAGAGGGAG 61.543 68.421 0.00 0.00 0.00 4.30
900 1014 2.516460 GCCATGGCCTGAGCTCTG 60.516 66.667 27.24 14.67 39.73 3.35
910 1024 0.902048 CTGAGCTCTGGAGTGGTGGA 60.902 60.000 16.19 0.00 0.00 4.02
912 1026 0.902516 GAGCTCTGGAGTGGTGGACT 60.903 60.000 6.43 0.00 37.76 3.85
913 1027 1.190833 AGCTCTGGAGTGGTGGACTG 61.191 60.000 0.00 0.00 33.83 3.51
914 1028 1.978473 CTCTGGAGTGGTGGACTGG 59.022 63.158 0.00 0.00 33.83 4.00
915 1029 2.177594 CTCTGGAGTGGTGGACTGGC 62.178 65.000 0.00 0.00 33.83 4.85
916 1030 3.596066 CTGGAGTGGTGGACTGGCG 62.596 68.421 0.00 0.00 33.83 5.69
917 1031 4.394712 GGAGTGGTGGACTGGCGG 62.395 72.222 0.00 0.00 33.83 6.13
946 1060 0.988439 CTTCTTCTTCTGCGCTCGAC 59.012 55.000 9.73 0.00 0.00 4.20
980 1094 1.678970 CTTCTTTTGGGGAGGCCGG 60.679 63.158 0.00 0.00 0.00 6.13
981 1095 2.426305 CTTCTTTTGGGGAGGCCGGT 62.426 60.000 1.90 0.00 0.00 5.28
982 1096 2.014033 TTCTTTTGGGGAGGCCGGTT 62.014 55.000 1.90 0.00 0.00 4.44
983 1097 2.203567 TTTTGGGGAGGCCGGTTG 60.204 61.111 1.90 0.00 0.00 3.77
984 1098 2.706952 CTTTTGGGGAGGCCGGTTGA 62.707 60.000 1.90 0.00 0.00 3.18
985 1099 2.987355 TTTTGGGGAGGCCGGTTGAC 62.987 60.000 1.90 0.00 0.00 3.18
988 1102 3.728373 GGGAGGCCGGTTGACCAT 61.728 66.667 1.90 0.00 35.14 3.55
997 1111 1.804326 GGTTGACCATCGTCGTCCG 60.804 63.158 0.00 0.00 42.37 4.79
1005 1131 2.487532 ATCGTCGTCCGGGATGTCC 61.488 63.158 15.63 7.26 37.11 4.02
1038 1164 0.323725 TCAAGCTGGGATCAAAGCCC 60.324 55.000 13.59 0.00 46.22 5.19
1072 1198 3.717294 AGGGGCAGGCGTGGTAAG 61.717 66.667 8.72 0.00 0.00 2.34
1087 1214 4.613622 CGTGGTAAGTTTCTTGCCTCATTG 60.614 45.833 15.24 0.26 0.00 2.82
1105 1232 4.532126 TCATTGCTCTCTTCTTCCCTGTTA 59.468 41.667 0.00 0.00 0.00 2.41
1124 1251 4.141482 TGTTAGCCCTTTGTTCTTCTCTGT 60.141 41.667 0.00 0.00 0.00 3.41
1147 1279 9.683069 CTGTGTTAATTTAGCTTTGATTTCTGT 57.317 29.630 0.00 0.00 0.00 3.41
1185 1317 0.470080 CTCTCCCTTGCCCGGATAGA 60.470 60.000 0.73 0.00 0.00 1.98
1186 1318 0.031515 TCTCCCTTGCCCGGATAGAA 60.032 55.000 0.73 0.00 0.00 2.10
1195 1327 2.507886 TGCCCGGATAGAAAGAATTGGA 59.492 45.455 0.73 0.00 0.00 3.53
1198 1330 3.477530 CCGGATAGAAAGAATTGGACCC 58.522 50.000 0.00 0.00 0.00 4.46
1205 1337 5.319043 AGAAAGAATTGGACCCTGTTGTA 57.681 39.130 0.00 0.00 0.00 2.41
1216 1348 2.108250 ACCCTGTTGTATTGTTCCTGCT 59.892 45.455 0.00 0.00 0.00 4.24
1266 1398 8.409358 TGAAAGAAAGAATTTAGGGGAGAAAG 57.591 34.615 0.00 0.00 39.27 2.62
1325 1458 3.726607 TGCTCAAATTGGTGCGAATTTT 58.273 36.364 2.60 0.00 34.05 1.82
1328 1461 4.024977 GCTCAAATTGGTGCGAATTTTGTT 60.025 37.500 2.85 0.00 34.05 2.83
1361 1494 2.099756 GGAGGTGCCATAATTCACAAGC 59.900 50.000 0.00 0.00 35.04 4.01
1362 1495 3.019564 GAGGTGCCATAATTCACAAGCT 58.980 45.455 0.00 0.00 35.04 3.74
1415 1548 2.701780 CGCTGTACACCGCTCTCCT 61.702 63.158 0.00 0.00 0.00 3.69
1428 1561 2.945447 CTCTCCTTGAGCTCTGTCTG 57.055 55.000 16.19 2.93 35.84 3.51
1440 1573 3.629398 AGCTCTGTCTGGAGTTTTGTTTG 59.371 43.478 0.00 0.00 35.89 2.93
1441 1574 3.378427 GCTCTGTCTGGAGTTTTGTTTGT 59.622 43.478 0.00 0.00 35.89 2.83
1444 1577 6.426937 GCTCTGTCTGGAGTTTTGTTTGTATA 59.573 38.462 0.00 0.00 35.89 1.47
1445 1578 7.119846 GCTCTGTCTGGAGTTTTGTTTGTATAT 59.880 37.037 0.00 0.00 35.89 0.86
1446 1579 9.653287 CTCTGTCTGGAGTTTTGTTTGTATATA 57.347 33.333 0.00 0.00 0.00 0.86
1489 1636 8.970020 TCATACTCACCTATTTTCAATTGCAAT 58.030 29.630 5.99 5.99 0.00 3.56
1514 1661 4.499188 CGATGGGATTCGTTTAGCAGAGTA 60.499 45.833 0.00 0.00 34.46 2.59
1539 1686 0.892814 ACTTGCTCCTCCTTGCTTGC 60.893 55.000 0.00 0.00 0.00 4.01
1542 1689 2.338785 GCTCCTCCTTGCTTGCCAC 61.339 63.158 0.00 0.00 0.00 5.01
1544 1691 3.058160 CCTCCTTGCTTGCCACGG 61.058 66.667 0.00 0.00 34.27 4.94
1545 1692 2.281761 CTCCTTGCTTGCCACGGT 60.282 61.111 0.00 0.00 34.59 4.83
1551 1702 1.539388 CTTGCTTGCCACGGTTGATTA 59.461 47.619 0.00 0.00 0.00 1.75
1552 1703 1.832883 TGCTTGCCACGGTTGATTAT 58.167 45.000 0.00 0.00 0.00 1.28
1571 1722 9.927668 TTGATTATGAAAGAAAATTCAGGGTTC 57.072 29.630 0.00 0.00 42.21 3.62
1591 1744 8.264347 AGGGTTCAAAACATTAGTTTCAAATGT 58.736 29.630 0.00 0.00 46.79 2.71
1606 1759 3.056678 TCAAATGTTATGCCAGTTGCCAG 60.057 43.478 0.00 0.00 39.54 4.85
1649 1806 3.171277 CGTGAGCCGGAATTTGAAATTC 58.829 45.455 19.57 19.57 0.00 2.17
1708 1869 2.233922 TCTCACGAAATCAGGGAAGACC 59.766 50.000 0.00 0.00 40.67 3.85
1741 1902 2.353610 CCTGCTTTGGTGCCCCATC 61.354 63.158 0.00 0.00 41.49 3.51
1754 1915 0.882042 CCCCATCGCACATGCTAGAC 60.882 60.000 1.82 0.00 39.32 2.59
1769 1930 2.744202 GCTAGACACAGTTCCACCATTG 59.256 50.000 0.00 0.00 0.00 2.82
1773 1934 1.956477 ACACAGTTCCACCATTGAAGC 59.044 47.619 0.00 0.00 0.00 3.86
1789 1951 1.750778 GAAGCATGGTGGGGTGTTATG 59.249 52.381 0.00 0.00 0.00 1.90
1796 1958 2.310349 TGGTGGGGTGTTATGCACTTAT 59.690 45.455 0.00 0.00 46.86 1.73
1797 1959 3.245443 TGGTGGGGTGTTATGCACTTATT 60.245 43.478 0.00 0.00 46.86 1.40
1798 1960 3.130340 GGTGGGGTGTTATGCACTTATTG 59.870 47.826 0.00 0.00 46.86 1.90
1799 1961 3.761752 GTGGGGTGTTATGCACTTATTGT 59.238 43.478 0.00 0.00 46.86 2.71
1800 1962 4.944930 GTGGGGTGTTATGCACTTATTGTA 59.055 41.667 0.00 0.00 46.86 2.41
1801 1963 5.592688 GTGGGGTGTTATGCACTTATTGTAT 59.407 40.000 0.00 0.00 46.86 2.29
1842 2011 0.387239 GTTGATTGCAGTTGACCGCC 60.387 55.000 0.00 0.00 0.00 6.13
1856 2025 0.674895 ACCGCCTCTGCAATCAGTTC 60.675 55.000 0.00 0.00 41.10 3.01
1906 2075 5.047802 AGTTTTTCATGGATCCACATCACAC 60.048 40.000 18.99 10.48 0.00 3.82
1990 2164 8.714906 ACATGTAATTATTTAGTAGGGAGCAGT 58.285 33.333 0.00 0.00 0.00 4.40
2007 2182 6.202762 GGGAGCAGTTTTGGATTTGTTTTAAG 59.797 38.462 0.00 0.00 0.00 1.85
2016 2191 7.775053 TTGGATTTGTTTTAAGTGGATAGCT 57.225 32.000 0.00 0.00 0.00 3.32
2019 2194 7.121168 TGGATTTGTTTTAAGTGGATAGCTCAG 59.879 37.037 0.00 0.00 0.00 3.35
2049 2224 4.229096 CTGTTTCATGAAATCAACCACCG 58.771 43.478 23.05 3.04 32.36 4.94
2132 2307 7.387397 TGTTTCAAATTTGCTCTGTGAAGTTTT 59.613 29.630 13.54 0.00 30.43 2.43
2247 2423 2.242196 CTGTGGAGGTTGGGGATATGTT 59.758 50.000 0.00 0.00 0.00 2.71
2278 2454 7.730364 CCTTCATAAGGTAATACGCATTTCT 57.270 36.000 0.00 0.00 43.95 2.52
2340 2522 7.760340 GCTAGAAACAGCTACTGTATTACTTGT 59.240 37.037 0.00 0.00 44.62 3.16
2341 2523 9.640963 CTAGAAACAGCTACTGTATTACTTGTT 57.359 33.333 0.00 0.00 44.62 2.83
2358 2540 4.974368 TTGTTATTACAAGAATGCCCCG 57.026 40.909 0.00 0.00 39.29 5.73
2373 2555 2.823154 TGCCCCGGAAGAAAGTTATTTG 59.177 45.455 0.73 0.00 0.00 2.32
2377 2559 4.380550 CCCCGGAAGAAAGTTATTTGAAGC 60.381 45.833 0.73 0.00 0.00 3.86
2457 2665 2.360553 AGTCTCTCGTGACATGCAAG 57.639 50.000 0.00 0.00 39.27 4.01
2543 2753 8.506168 TTATTAAGAAGGATAAGCAACTGGTG 57.494 34.615 0.00 0.00 0.00 4.17
2544 2754 4.640771 AAGAAGGATAAGCAACTGGTGA 57.359 40.909 0.00 0.00 0.00 4.02
2549 2759 4.012374 AGGATAAGCAACTGGTGATTGTG 58.988 43.478 6.43 0.00 36.28 3.33
2553 2763 2.653726 AGCAACTGGTGATTGTGTTGA 58.346 42.857 0.00 0.00 41.35 3.18
2556 2766 4.081752 AGCAACTGGTGATTGTGTTGAAAA 60.082 37.500 0.00 0.00 41.35 2.29
2557 2767 4.629200 GCAACTGGTGATTGTGTTGAAAAA 59.371 37.500 0.00 0.00 41.35 1.94
2664 2875 3.021695 CTCCAGTGGTCATTCATGCATT 58.978 45.455 9.54 0.00 0.00 3.56
2666 2877 3.444742 TCCAGTGGTCATTCATGCATTTC 59.555 43.478 9.54 0.00 0.00 2.17
2673 2884 5.945191 TGGTCATTCATGCATTTCTACTGAA 59.055 36.000 0.00 0.00 0.00 3.02
2700 2924 6.505044 TCTTACTTTGTCACTATACGCTGA 57.495 37.500 0.00 0.00 0.00 4.26
2704 2928 2.561733 TGTCACTATACGCTGACTGC 57.438 50.000 3.56 0.00 38.12 4.40
2711 2935 4.627467 CACTATACGCTGACTGCTTTTCTT 59.373 41.667 2.66 0.00 40.11 2.52
2722 2946 7.333528 TGACTGCTTTTCTTCTTAATGTTGT 57.666 32.000 0.00 0.00 0.00 3.32
2723 2947 7.417612 TGACTGCTTTTCTTCTTAATGTTGTC 58.582 34.615 0.00 0.00 0.00 3.18
2774 2999 0.663153 AAGTGCCGTTCTTGAACAGC 59.337 50.000 13.06 13.06 0.00 4.40
2779 3004 1.129437 GCCGTTCTTGAACAGCTGATC 59.871 52.381 23.35 19.57 0.00 2.92
3103 3328 2.115595 GTGAAGAGATGCATCGAGTCG 58.884 52.381 20.67 6.09 0.00 4.18
3277 3502 7.287512 TGATGTTTCATCATTGAGTTTTCCA 57.712 32.000 8.14 0.00 32.27 3.53
3376 3601 0.246635 CGCGGAAGTATATCCCAGGG 59.753 60.000 0.00 0.00 36.00 4.45
3433 3952 3.265791 GGCTGGTACTCTTTCTGATGTG 58.734 50.000 0.00 0.00 0.00 3.21
3541 4060 7.541162 TGCTTAAAACATCCATGATTCTGAAG 58.459 34.615 0.00 0.00 0.00 3.02
3568 4087 1.202989 TCCACCTGCATTGCCAACTTA 60.203 47.619 6.12 0.00 0.00 2.24
3802 4321 5.775195 TGCTAAGCTACTTGATGGCTATCTA 59.225 40.000 11.68 2.70 46.08 1.98
3841 4360 2.668457 CGTCAATCTGAAACCTCCGAAG 59.332 50.000 0.00 0.00 0.00 3.79
3935 4454 7.036220 CGATGTGTACTTGAAGGTAGATCTTT 58.964 38.462 0.00 0.00 0.00 2.52
3936 4455 7.221067 CGATGTGTACTTGAAGGTAGATCTTTC 59.779 40.741 0.00 0.00 33.54 2.62
3942 4461 6.648192 ACTTGAAGGTAGATCTTTCATCCTG 58.352 40.000 0.00 0.00 40.79 3.86
3943 4462 5.028549 TGAAGGTAGATCTTTCATCCTGC 57.971 43.478 0.00 1.47 37.25 4.85
3944 4463 4.718774 TGAAGGTAGATCTTTCATCCTGCT 59.281 41.667 0.00 0.00 37.25 4.24
3945 4464 5.190528 TGAAGGTAGATCTTTCATCCTGCTT 59.809 40.000 0.00 0.00 37.25 3.91
3946 4465 5.707066 AGGTAGATCTTTCATCCTGCTTT 57.293 39.130 0.00 0.00 0.00 3.51
3947 4466 5.435291 AGGTAGATCTTTCATCCTGCTTTG 58.565 41.667 0.00 0.00 0.00 2.77
3948 4467 5.190528 AGGTAGATCTTTCATCCTGCTTTGA 59.809 40.000 0.00 0.00 0.00 2.69
3949 4468 6.060788 GGTAGATCTTTCATCCTGCTTTGAT 58.939 40.000 0.00 0.00 0.00 2.57
3950 4469 6.204495 GGTAGATCTTTCATCCTGCTTTGATC 59.796 42.308 0.00 0.00 0.00 2.92
3951 4470 6.003859 AGATCTTTCATCCTGCTTTGATCT 57.996 37.500 0.00 0.00 35.86 2.75
3952 4471 6.424883 AGATCTTTCATCCTGCTTTGATCTT 58.575 36.000 0.00 0.00 36.89 2.40
3953 4472 6.890814 AGATCTTTCATCCTGCTTTGATCTTT 59.109 34.615 0.00 0.00 36.89 2.52
3954 4473 6.263516 TCTTTCATCCTGCTTTGATCTTTG 57.736 37.500 0.00 0.00 0.00 2.77
3955 4474 5.771666 TCTTTCATCCTGCTTTGATCTTTGT 59.228 36.000 0.00 0.00 0.00 2.83
3956 4475 6.266103 TCTTTCATCCTGCTTTGATCTTTGTT 59.734 34.615 0.00 0.00 0.00 2.83
3957 4476 6.409524 TTCATCCTGCTTTGATCTTTGTTT 57.590 33.333 0.00 0.00 0.00 2.83
3958 4477 5.775686 TCATCCTGCTTTGATCTTTGTTTG 58.224 37.500 0.00 0.00 0.00 2.93
3959 4478 4.589216 TCCTGCTTTGATCTTTGTTTGG 57.411 40.909 0.00 0.00 0.00 3.28
3960 4479 4.214310 TCCTGCTTTGATCTTTGTTTGGA 58.786 39.130 0.00 0.00 0.00 3.53
3961 4480 4.648762 TCCTGCTTTGATCTTTGTTTGGAA 59.351 37.500 0.00 0.00 0.00 3.53
3962 4481 4.746611 CCTGCTTTGATCTTTGTTTGGAAC 59.253 41.667 0.00 0.00 0.00 3.62
3963 4482 5.336150 TGCTTTGATCTTTGTTTGGAACA 57.664 34.783 0.00 0.00 40.21 3.18
3964 4483 5.350633 TGCTTTGATCTTTGTTTGGAACAG 58.649 37.500 0.00 0.00 43.27 3.16
3965 4484 4.209911 GCTTTGATCTTTGTTTGGAACAGC 59.790 41.667 0.00 0.00 43.27 4.40
3966 4485 5.594926 CTTTGATCTTTGTTTGGAACAGCT 58.405 37.500 0.00 0.00 43.27 4.24
3967 4486 6.707440 TTTGATCTTTGTTTGGAACAGCTA 57.293 33.333 0.00 0.00 43.27 3.32
3968 4487 6.707440 TTGATCTTTGTTTGGAACAGCTAA 57.293 33.333 0.00 0.00 43.27 3.09
3969 4488 6.899393 TGATCTTTGTTTGGAACAGCTAAT 57.101 33.333 0.00 0.00 43.27 1.73
3970 4489 7.288810 TGATCTTTGTTTGGAACAGCTAATT 57.711 32.000 0.00 0.00 43.27 1.40
3971 4490 8.402798 TGATCTTTGTTTGGAACAGCTAATTA 57.597 30.769 0.00 0.00 43.27 1.40
3972 4491 8.514594 TGATCTTTGTTTGGAACAGCTAATTAG 58.485 33.333 8.20 8.20 43.27 1.73
3996 4515 8.953368 AGCATTTTGTCTTCAGAAAAGAAATT 57.047 26.923 0.00 0.00 0.00 1.82
3997 4516 8.823818 AGCATTTTGTCTTCAGAAAAGAAATTG 58.176 29.630 0.00 0.00 0.00 2.32
3998 4517 8.066000 GCATTTTGTCTTCAGAAAAGAAATTGG 58.934 33.333 4.19 0.00 0.00 3.16
3999 4518 9.316730 CATTTTGTCTTCAGAAAAGAAATTGGA 57.683 29.630 0.00 0.00 0.00 3.53
4000 4519 8.702163 TTTTGTCTTCAGAAAAGAAATTGGAC 57.298 30.769 0.00 0.00 0.00 4.02
4001 4520 7.403312 TTGTCTTCAGAAAAGAAATTGGACA 57.597 32.000 0.00 0.00 31.36 4.02
4002 4521 7.587037 TGTCTTCAGAAAAGAAATTGGACAT 57.413 32.000 0.00 0.00 29.51 3.06
4003 4522 8.010733 TGTCTTCAGAAAAGAAATTGGACATT 57.989 30.769 0.00 0.00 29.51 2.71
4004 4523 8.137437 TGTCTTCAGAAAAGAAATTGGACATTC 58.863 33.333 0.00 0.00 29.51 2.67
4050 4601 7.280428 TGACATCATTTTGATTTTGTGTTGCTT 59.720 29.630 0.00 0.00 34.28 3.91
4051 4602 7.411274 ACATCATTTTGATTTTGTGTTGCTTG 58.589 30.769 0.00 0.00 34.28 4.01
4078 4629 0.990374 ATTCCTGGCTGTCAGAAGCT 59.010 50.000 11.55 0.00 46.18 3.74
4522 5091 2.286872 CTGAAGATGAAGCCGCAGATT 58.713 47.619 0.00 0.00 0.00 2.40
4663 5232 4.618920 ACACCAAACTCCCTACTAGTTG 57.381 45.455 0.00 0.00 37.26 3.16
4677 5246 5.582665 CCTACTAGTTGCTCCTGTGATTTTC 59.417 44.000 0.00 0.00 0.00 2.29
4678 5247 3.997021 ACTAGTTGCTCCTGTGATTTTCG 59.003 43.478 0.00 0.00 0.00 3.46
4700 5269 2.128771 AACTTGGTGTGAGCTGTGTT 57.871 45.000 0.00 0.00 0.00 3.32
4701 5270 3.275617 AACTTGGTGTGAGCTGTGTTA 57.724 42.857 0.00 0.00 0.00 2.41
4702 5271 3.492102 ACTTGGTGTGAGCTGTGTTAT 57.508 42.857 0.00 0.00 0.00 1.89
4703 5272 4.617253 ACTTGGTGTGAGCTGTGTTATA 57.383 40.909 0.00 0.00 0.00 0.98
4704 5273 4.569943 ACTTGGTGTGAGCTGTGTTATAG 58.430 43.478 0.00 0.00 0.00 1.31
4705 5274 4.283467 ACTTGGTGTGAGCTGTGTTATAGA 59.717 41.667 0.00 0.00 0.00 1.98
4706 5275 4.188247 TGGTGTGAGCTGTGTTATAGAC 57.812 45.455 0.00 0.00 0.00 2.59
4707 5276 3.832490 TGGTGTGAGCTGTGTTATAGACT 59.168 43.478 0.00 0.00 0.00 3.24
4749 5318 4.328536 TCGTTTAGGTTTACATGTGCCAT 58.671 39.130 9.11 0.00 0.00 4.40
4824 6013 2.167662 GTGTTGGTTAGTGGGAATGGG 58.832 52.381 0.00 0.00 0.00 4.00
4893 6082 3.254060 CAAGTGGTCGTCAGTTCATAGG 58.746 50.000 0.07 0.00 36.93 2.57
4901 6090 1.153168 CAGTTCATAGGTGCGGGGG 60.153 63.158 0.00 0.00 0.00 5.40
4903 6092 3.804329 TTCATAGGTGCGGGGGCC 61.804 66.667 0.00 0.00 0.00 5.80
4918 6111 2.285977 GGGGCCGAAATTGTAGTACTG 58.714 52.381 5.39 0.00 0.00 2.74
5047 6244 3.748048 CGACTGATGATTTGTGTGGACTT 59.252 43.478 0.00 0.00 0.00 3.01
5048 6245 4.377738 CGACTGATGATTTGTGTGGACTTG 60.378 45.833 0.00 0.00 0.00 3.16
5049 6246 4.717877 ACTGATGATTTGTGTGGACTTGA 58.282 39.130 0.00 0.00 0.00 3.02
5052 6249 4.999311 TGATGATTTGTGTGGACTTGAGAG 59.001 41.667 0.00 0.00 0.00 3.20
5053 6250 4.687901 TGATTTGTGTGGACTTGAGAGA 57.312 40.909 0.00 0.00 0.00 3.10
5054 6251 4.635223 TGATTTGTGTGGACTTGAGAGAG 58.365 43.478 0.00 0.00 0.00 3.20
5055 6252 4.344968 TGATTTGTGTGGACTTGAGAGAGA 59.655 41.667 0.00 0.00 0.00 3.10
5056 6253 4.327982 TTTGTGTGGACTTGAGAGAGAG 57.672 45.455 0.00 0.00 0.00 3.20
5063 6273 2.940410 GGACTTGAGAGAGAGTAGTCCG 59.060 54.545 0.00 0.00 43.71 4.79
5078 6288 3.721087 AGTCCGGTTGATTCCTTTGAT 57.279 42.857 0.00 0.00 0.00 2.57
5079 6289 3.347216 AGTCCGGTTGATTCCTTTGATG 58.653 45.455 0.00 0.00 0.00 3.07
5080 6290 2.423538 GTCCGGTTGATTCCTTTGATGG 59.576 50.000 0.00 0.00 0.00 3.51
5081 6291 2.041081 TCCGGTTGATTCCTTTGATGGT 59.959 45.455 0.00 0.00 0.00 3.55
5082 6292 2.164219 CCGGTTGATTCCTTTGATGGTG 59.836 50.000 0.00 0.00 0.00 4.17
5087 6331 3.614092 TGATTCCTTTGATGGTGAGAGC 58.386 45.455 0.00 0.00 0.00 4.09
5109 6353 1.212616 GACCAGAAATCGCCATCTCG 58.787 55.000 0.00 0.00 0.00 4.04
5110 6354 0.811616 ACCAGAAATCGCCATCTCGC 60.812 55.000 0.00 0.00 0.00 5.03
5123 6367 0.729116 ATCTCGCGTCAATGCAAAGG 59.271 50.000 5.77 0.00 34.15 3.11
5125 6369 0.516877 CTCGCGTCAATGCAAAGGAA 59.483 50.000 5.77 0.00 34.15 3.36
5127 6371 0.040514 CGCGTCAATGCAAAGGAACA 60.041 50.000 0.00 0.00 34.15 3.18
5128 6372 1.599171 CGCGTCAATGCAAAGGAACAA 60.599 47.619 0.00 0.00 34.15 2.83
5129 6373 1.786579 GCGTCAATGCAAAGGAACAAC 59.213 47.619 0.00 0.00 34.15 3.32
5130 6374 2.393764 CGTCAATGCAAAGGAACAACC 58.606 47.619 0.00 0.00 39.35 3.77
5131 6375 2.754472 GTCAATGCAAAGGAACAACCC 58.246 47.619 0.00 0.00 40.05 4.11
5132 6376 1.339610 TCAATGCAAAGGAACAACCCG 59.660 47.619 0.00 0.00 40.05 5.28
5133 6377 1.068434 CAATGCAAAGGAACAACCCGT 59.932 47.619 0.00 0.00 40.05 5.28
5134 6378 0.673437 ATGCAAAGGAACAACCCGTG 59.327 50.000 0.00 0.00 40.05 4.94
5136 6380 0.030235 GCAAAGGAACAACCCGTGAC 59.970 55.000 0.00 0.00 40.05 3.67
5137 6381 1.384525 CAAAGGAACAACCCGTGACA 58.615 50.000 0.00 0.00 40.05 3.58
5138 6382 1.064952 CAAAGGAACAACCCGTGACAC 59.935 52.381 0.00 0.00 40.05 3.67
5139 6383 0.464916 AAGGAACAACCCGTGACACC 60.465 55.000 0.00 0.00 40.05 4.16
5144 6388 0.253610 ACAACCCGTGACACCTCAAA 59.746 50.000 0.00 0.00 0.00 2.69
5156 6400 5.066505 GTGACACCTCAAACAAGAGAATTGT 59.933 40.000 0.00 0.00 37.87 2.71
5218 6462 1.475280 GAGCTGGCAATGCAGATTTGA 59.525 47.619 7.79 0.00 0.00 2.69
5219 6463 2.100916 GAGCTGGCAATGCAGATTTGAT 59.899 45.455 7.79 0.00 0.00 2.57
5236 6480 7.434307 CAGATTTGATATGCATCTTTTCCACAC 59.566 37.037 0.19 0.00 31.93 3.82
5249 6493 8.616076 CATCTTTTCCACACCATAAATCTCTAC 58.384 37.037 0.00 0.00 0.00 2.59
5250 6494 6.816640 TCTTTTCCACACCATAAATCTCTACG 59.183 38.462 0.00 0.00 0.00 3.51
5251 6495 4.054780 TCCACACCATAAATCTCTACGC 57.945 45.455 0.00 0.00 0.00 4.42
5252 6496 3.449377 TCCACACCATAAATCTCTACGCA 59.551 43.478 0.00 0.00 0.00 5.24
5267 6518 5.124138 TCTCTACGCAGGTTTCTCTAGAAAG 59.876 44.000 5.41 0.00 43.82 2.62
5276 6527 4.754322 GTTTCTCTAGAAAGCAGAGGGAG 58.246 47.826 5.41 0.00 43.82 4.30
5311 6571 3.232213 TCTTTCTTACTACTGGCGCAG 57.768 47.619 10.83 7.58 37.52 5.18
5330 6590 1.297456 GAGCAAGGTCAGCAGACAGC 61.297 60.000 11.67 11.27 46.80 4.40
5349 7294 2.298446 AGCGTGATATGGACAGAGATGG 59.702 50.000 0.00 0.00 0.00 3.51
5353 7298 4.558296 CGTGATATGGACAGAGATGGTCAG 60.558 50.000 0.00 0.00 37.00 3.51
5364 7309 1.308128 ATGGTCAGGATGGGAGGCA 60.308 57.895 0.00 0.00 36.16 4.75
5375 7320 1.450312 GGGAGGCACATCTGGTTCG 60.450 63.158 0.00 0.00 0.00 3.95
5403 7593 9.974980 GATATTTTTGTTTCCTTGGAGTTGTAA 57.025 29.630 0.00 0.00 0.00 2.41
5404 7594 9.981114 ATATTTTTGTTTCCTTGGAGTTGTAAG 57.019 29.630 0.00 0.00 0.00 2.34
5405 7595 5.845391 TTTGTTTCCTTGGAGTTGTAAGG 57.155 39.130 0.00 0.00 43.83 2.69
5434 7628 8.980143 TTACTTGAAGTTTGAGTTCCTTTTTG 57.020 30.769 1.97 0.00 0.00 2.44
5436 7630 7.441836 ACTTGAAGTTTGAGTTCCTTTTTGTT 58.558 30.769 0.00 0.00 0.00 2.83
5439 7633 8.305441 TGAAGTTTGAGTTCCTTTTTGTTTTC 57.695 30.769 0.00 0.00 0.00 2.29
5440 7634 8.147704 TGAAGTTTGAGTTCCTTTTTGTTTTCT 58.852 29.630 0.00 0.00 0.00 2.52
5491 7691 4.218200 TGGGTGACAATGACATCAAATGAC 59.782 41.667 0.00 1.06 0.00 3.06
5493 7693 4.406069 GTGACAATGACATCAAATGACCG 58.594 43.478 5.37 0.00 0.00 4.79
5528 8072 1.067295 TCTCCAGCCTGGTGACAAAT 58.933 50.000 11.27 0.00 42.06 2.32
5537 8081 3.821033 GCCTGGTGACAAATCTAAACACT 59.179 43.478 0.00 0.00 42.06 3.55
5544 8088 9.959749 TGGTGACAAATCTAAACACTTATTTTC 57.040 29.630 0.00 0.00 37.44 2.29
5593 8155 1.617740 GGTACGTACACGCTGGTAAC 58.382 55.000 26.02 2.02 44.43 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 8.865090 TGTGTGGTAGAAAATGGAAAATGTAAT 58.135 29.630 0.00 0.00 0.00 1.89
17 18 8.239038 TGTGTGGTAGAAAATGGAAAATGTAA 57.761 30.769 0.00 0.00 0.00 2.41
18 19 7.825331 TGTGTGGTAGAAAATGGAAAATGTA 57.175 32.000 0.00 0.00 0.00 2.29
20 21 7.209475 ACTTGTGTGGTAGAAAATGGAAAATG 58.791 34.615 0.00 0.00 0.00 2.32
21 22 7.360113 ACTTGTGTGGTAGAAAATGGAAAAT 57.640 32.000 0.00 0.00 0.00 1.82
25 26 8.141298 TCTATACTTGTGTGGTAGAAAATGGA 57.859 34.615 0.00 0.00 0.00 3.41
36 37 6.870965 GCAGGAATCTATCTATACTTGTGTGG 59.129 42.308 0.00 0.00 0.00 4.17
52 53 7.503902 GTGGGAAATAAATTAGAGCAGGAATCT 59.496 37.037 0.00 0.00 0.00 2.40
53 54 7.255625 GGTGGGAAATAAATTAGAGCAGGAATC 60.256 40.741 0.00 0.00 0.00 2.52
54 55 6.551227 GGTGGGAAATAAATTAGAGCAGGAAT 59.449 38.462 0.00 0.00 0.00 3.01
56 57 5.445964 GGTGGGAAATAAATTAGAGCAGGA 58.554 41.667 0.00 0.00 0.00 3.86
60 63 5.830000 AACGGTGGGAAATAAATTAGAGC 57.170 39.130 0.00 0.00 0.00 4.09
80 83 1.421485 CATCGAGTGCAGCGGAAAC 59.579 57.895 8.80 0.00 0.00 2.78
92 95 4.598894 CGGCTGGCTCCCATCGAG 62.599 72.222 0.00 0.00 42.04 4.04
102 105 3.869272 CAGAATCGCACGGCTGGC 61.869 66.667 0.00 0.00 0.00 4.85
113 116 2.996168 ATACCGCGGCCTGCAGAATC 62.996 60.000 28.58 3.53 46.97 2.52
114 117 2.996168 GATACCGCGGCCTGCAGAAT 62.996 60.000 28.58 4.37 46.97 2.40
123 126 0.672711 GGGGAAATAGATACCGCGGC 60.673 60.000 28.58 9.52 0.00 6.53
125 128 2.289444 ACATGGGGAAATAGATACCGCG 60.289 50.000 0.00 0.00 39.06 6.46
126 129 3.335579 GACATGGGGAAATAGATACCGC 58.664 50.000 0.00 0.00 37.20 5.68
127 130 3.257375 TCGACATGGGGAAATAGATACCG 59.743 47.826 0.00 0.00 0.00 4.02
128 131 4.562963 GGTCGACATGGGGAAATAGATACC 60.563 50.000 18.91 0.00 0.00 2.73
129 132 4.039973 TGGTCGACATGGGGAAATAGATAC 59.960 45.833 18.91 0.00 0.00 2.24
130 133 4.228010 TGGTCGACATGGGGAAATAGATA 58.772 43.478 18.91 0.00 0.00 1.98
131 134 3.045634 TGGTCGACATGGGGAAATAGAT 58.954 45.455 18.91 0.00 0.00 1.98
133 136 3.275617 TTGGTCGACATGGGGAAATAG 57.724 47.619 18.91 0.00 0.00 1.73
134 137 3.722908 TTTGGTCGACATGGGGAAATA 57.277 42.857 18.91 0.00 0.00 1.40
135 138 2.595750 TTTGGTCGACATGGGGAAAT 57.404 45.000 18.91 0.00 0.00 2.17
136 139 2.595750 ATTTGGTCGACATGGGGAAA 57.404 45.000 18.91 6.27 0.00 3.13
137 140 3.722908 TTATTTGGTCGACATGGGGAA 57.277 42.857 18.91 0.94 0.00 3.97
138 141 3.943671 ATTATTTGGTCGACATGGGGA 57.056 42.857 18.91 0.00 0.00 4.81
139 142 3.951037 TCAATTATTTGGTCGACATGGGG 59.049 43.478 18.91 0.00 33.44 4.96
140 143 5.772825 ATCAATTATTTGGTCGACATGGG 57.227 39.130 18.91 0.00 33.44 4.00
141 144 6.692681 GTCAATCAATTATTTGGTCGACATGG 59.307 38.462 18.91 0.00 33.44 3.66
143 146 7.389803 TGTCAATCAATTATTTGGTCGACAT 57.610 32.000 18.91 4.93 33.50 3.06
144 147 6.128035 CCTGTCAATCAATTATTTGGTCGACA 60.128 38.462 18.91 4.74 35.31 4.35
145 148 6.093495 TCCTGTCAATCAATTATTTGGTCGAC 59.907 38.462 7.13 7.13 33.44 4.20
146 149 6.176896 TCCTGTCAATCAATTATTTGGTCGA 58.823 36.000 0.00 0.00 33.44 4.20
148 151 7.396540 ACTCCTGTCAATCAATTATTTGGTC 57.603 36.000 0.00 0.00 33.44 4.02
166 169 7.697691 CAACTAATGGTTGCTTATTACTCCTG 58.302 38.462 0.00 0.00 46.89 3.86
181 184 1.614317 GGCAGCAGGTCAACTAATGGT 60.614 52.381 0.00 0.00 0.00 3.55
207 210 2.660064 CCAGACGACAGGGGAAGGG 61.660 68.421 0.00 0.00 0.00 3.95
210 214 3.319198 GGCCAGACGACAGGGGAA 61.319 66.667 0.00 0.00 0.00 3.97
215 219 2.432628 GGAACGGCCAGACGACAG 60.433 66.667 2.24 0.00 37.61 3.51
228 232 0.600782 TGGTAGGCGTCAAACGGAAC 60.601 55.000 1.33 0.00 42.82 3.62
235 239 1.883275 CAATTGGTTGGTAGGCGTCAA 59.117 47.619 0.00 0.00 0.00 3.18
246 250 2.446435 AGGAATCGGGTCAATTGGTTG 58.554 47.619 5.42 0.00 36.65 3.77
285 291 3.044986 CCAACTCGACATTGTTTTGCTG 58.955 45.455 4.43 0.00 0.00 4.41
286 292 2.543653 GCCAACTCGACATTGTTTTGCT 60.544 45.455 4.43 0.00 0.00 3.91
287 293 1.786579 GCCAACTCGACATTGTTTTGC 59.213 47.619 4.43 0.00 0.00 3.68
342 348 2.350522 CATGACTGGGTGTACAAGAGC 58.649 52.381 0.00 0.00 0.00 4.09
343 349 2.936993 GCCATGACTGGGTGTACAAGAG 60.937 54.545 0.00 0.00 43.36 2.85
344 350 1.003118 GCCATGACTGGGTGTACAAGA 59.997 52.381 0.00 0.00 43.36 3.02
345 351 1.453155 GCCATGACTGGGTGTACAAG 58.547 55.000 0.00 0.00 43.36 3.16
346 352 0.321210 CGCCATGACTGGGTGTACAA 60.321 55.000 0.00 0.00 43.36 2.41
347 353 1.295101 CGCCATGACTGGGTGTACA 59.705 57.895 0.00 0.00 43.36 2.90
348 354 2.106683 GCGCCATGACTGGGTGTAC 61.107 63.158 0.00 0.00 43.36 2.90
394 404 9.303537 GCTGTTCTTTTCTACCACTAATAGTAG 57.696 37.037 0.00 0.00 37.83 2.57
395 405 7.972277 CGCTGTTCTTTTCTACCACTAATAGTA 59.028 37.037 0.00 0.00 0.00 1.82
396 406 6.812160 CGCTGTTCTTTTCTACCACTAATAGT 59.188 38.462 0.00 0.00 0.00 2.12
397 407 6.237861 GCGCTGTTCTTTTCTACCACTAATAG 60.238 42.308 0.00 0.00 0.00 1.73
398 408 5.579511 GCGCTGTTCTTTTCTACCACTAATA 59.420 40.000 0.00 0.00 0.00 0.98
400 410 3.744426 GCGCTGTTCTTTTCTACCACTAA 59.256 43.478 0.00 0.00 0.00 2.24
401 411 3.323243 GCGCTGTTCTTTTCTACCACTA 58.677 45.455 0.00 0.00 0.00 2.74
405 415 1.519408 TGGCGCTGTTCTTTTCTACC 58.481 50.000 7.64 0.00 0.00 3.18
407 417 2.548057 CAGTTGGCGCTGTTCTTTTCTA 59.452 45.455 7.64 0.00 0.00 2.10
430 454 0.191064 TGATTAGGGGGAGAGCGGAT 59.809 55.000 0.00 0.00 0.00 4.18
434 458 1.847088 AGGTTTGATTAGGGGGAGAGC 59.153 52.381 0.00 0.00 0.00 4.09
453 496 3.181474 GGTGATTAAGAAGGTCTCGGGAG 60.181 52.174 0.00 0.00 0.00 4.30
454 497 2.764572 GGTGATTAAGAAGGTCTCGGGA 59.235 50.000 0.00 0.00 0.00 5.14
510 557 2.610859 TCTTCACCCTCCCCTGCC 60.611 66.667 0.00 0.00 0.00 4.85
556 603 0.325203 AAGGTGGGCTCTCTCTCTCC 60.325 60.000 0.00 0.00 0.00 3.71
575 632 1.056660 GAAGGTGGAGGTGAAGGTGA 58.943 55.000 0.00 0.00 0.00 4.02
581 638 0.836400 GGAGGTGAAGGTGGAGGTGA 60.836 60.000 0.00 0.00 0.00 4.02
582 639 1.679898 GGAGGTGAAGGTGGAGGTG 59.320 63.158 0.00 0.00 0.00 4.00
583 640 1.539124 GGGAGGTGAAGGTGGAGGT 60.539 63.158 0.00 0.00 0.00 3.85
584 641 2.301738 GGGGAGGTGAAGGTGGAGG 61.302 68.421 0.00 0.00 0.00 4.30
585 642 2.301738 GGGGGAGGTGAAGGTGGAG 61.302 68.421 0.00 0.00 0.00 3.86
586 643 2.204090 GGGGGAGGTGAAGGTGGA 60.204 66.667 0.00 0.00 0.00 4.02
587 644 2.160171 TTGGGGGAGGTGAAGGTGG 61.160 63.158 0.00 0.00 0.00 4.61
588 645 1.074951 GTTGGGGGAGGTGAAGGTG 59.925 63.158 0.00 0.00 0.00 4.00
589 646 2.160853 GGTTGGGGGAGGTGAAGGT 61.161 63.158 0.00 0.00 0.00 3.50
590 647 2.763902 GGTTGGGGGAGGTGAAGG 59.236 66.667 0.00 0.00 0.00 3.46
591 648 1.725169 TTGGGTTGGGGGAGGTGAAG 61.725 60.000 0.00 0.00 0.00 3.02
592 649 1.701757 TTGGGTTGGGGGAGGTGAA 60.702 57.895 0.00 0.00 0.00 3.18
593 650 2.038221 TTGGGTTGGGGGAGGTGA 60.038 61.111 0.00 0.00 0.00 4.02
594 651 1.137594 TAGTTGGGTTGGGGGAGGTG 61.138 60.000 0.00 0.00 0.00 4.00
595 652 1.138228 GTAGTTGGGTTGGGGGAGGT 61.138 60.000 0.00 0.00 0.00 3.85
629 701 2.270874 ATCACCTCGCAATGGGGGTC 62.271 60.000 7.32 0.00 0.00 4.46
868 980 3.791586 GGCCTGGTCTGCCTCTCC 61.792 72.222 0.00 0.00 45.70 3.71
898 1012 2.348998 GCCAGTCCACCACTCCAG 59.651 66.667 0.00 0.00 30.26 3.86
900 1014 4.394712 CCGCCAGTCCACCACTCC 62.395 72.222 0.00 0.00 30.26 3.85
916 1030 3.062466 GAAGAAGCCCCAACCGCC 61.062 66.667 0.00 0.00 0.00 6.13
917 1031 1.587043 GAAGAAGAAGCCCCAACCGC 61.587 60.000 0.00 0.00 0.00 5.68
918 1032 0.036875 AGAAGAAGAAGCCCCAACCG 59.963 55.000 0.00 0.00 0.00 4.44
946 1060 2.945398 GAAGGCTGCGCGAGTAGGAG 62.945 65.000 12.10 0.00 44.57 3.69
1059 1185 1.069227 CAAGAAACTTACCACGCCTGC 60.069 52.381 0.00 0.00 0.00 4.85
1072 1198 3.080319 AGAGAGCAATGAGGCAAGAAAC 58.920 45.455 0.00 0.00 35.83 2.78
1087 1214 2.419436 GGCTAACAGGGAAGAAGAGAGC 60.419 54.545 0.00 0.00 0.00 4.09
1105 1232 2.173569 ACACAGAGAAGAACAAAGGGCT 59.826 45.455 0.00 0.00 0.00 5.19
1124 1251 8.637986 ACCACAGAAATCAAAGCTAAATTAACA 58.362 29.630 0.00 0.00 0.00 2.41
1147 1279 1.480545 AGCGAGCATGTGTATGTACCA 59.519 47.619 0.00 0.00 36.65 3.25
1185 1317 5.838521 ACAATACAACAGGGTCCAATTCTTT 59.161 36.000 0.00 0.00 0.00 2.52
1186 1318 5.393866 ACAATACAACAGGGTCCAATTCTT 58.606 37.500 0.00 0.00 0.00 2.52
1195 1327 2.108250 AGCAGGAACAATACAACAGGGT 59.892 45.455 0.00 0.00 0.00 4.34
1198 1330 4.999950 AGAAGAGCAGGAACAATACAACAG 59.000 41.667 0.00 0.00 0.00 3.16
1205 1337 3.893813 AGCAAAAGAAGAGCAGGAACAAT 59.106 39.130 0.00 0.00 0.00 2.71
1216 1348 3.407424 TCAGCTAGCAGCAAAAGAAGA 57.593 42.857 18.83 0.00 45.56 2.87
1266 1398 4.566987 CCAACCAACTACTCTTGTCCTAC 58.433 47.826 0.00 0.00 0.00 3.18
1325 1458 0.972134 CCTCCAGACAGAGCTCAACA 59.028 55.000 17.77 0.00 32.17 3.33
1328 1461 1.539560 GCACCTCCAGACAGAGCTCA 61.540 60.000 17.77 0.00 32.17 4.26
1361 1494 5.763204 TCCAGCCAAACAAGTTAAAGACTAG 59.237 40.000 0.00 0.00 37.72 2.57
1362 1495 5.529800 GTCCAGCCAAACAAGTTAAAGACTA 59.470 40.000 0.00 0.00 37.72 2.59
1415 1548 3.118261 ACAAAACTCCAGACAGAGCTCAA 60.118 43.478 17.77 0.00 37.39 3.02
1445 1578 9.100197 TGAGTATGAAATCAGTGGCCTATATTA 57.900 33.333 3.32 0.00 0.00 0.98
1446 1579 7.880195 GTGAGTATGAAATCAGTGGCCTATATT 59.120 37.037 3.32 0.00 0.00 1.28
1452 1585 2.945668 GGTGAGTATGAAATCAGTGGCC 59.054 50.000 0.00 0.00 0.00 5.36
1468 1611 7.471721 TCGTATTGCAATTGAAAATAGGTGAG 58.528 34.615 18.75 10.62 0.00 3.51
1503 1650 6.110411 AGCAAGTAAACCTACTCTGCTAAA 57.890 37.500 14.64 0.00 43.25 1.85
1514 1661 2.553247 GCAAGGAGGAGCAAGTAAACCT 60.553 50.000 0.00 0.00 35.29 3.50
1539 1686 7.812191 TGAATTTTCTTTCATAATCAACCGTGG 59.188 33.333 0.00 0.00 30.82 4.94
1542 1689 7.489113 CCCTGAATTTTCTTTCATAATCAACCG 59.511 37.037 0.00 0.00 35.20 4.44
1544 1691 9.710900 AACCCTGAATTTTCTTTCATAATCAAC 57.289 29.630 0.00 0.00 35.20 3.18
1545 1692 9.927668 GAACCCTGAATTTTCTTTCATAATCAA 57.072 29.630 0.00 0.00 35.20 2.57
1551 1702 8.046107 TGTTTTGAACCCTGAATTTTCTTTCAT 58.954 29.630 0.00 0.00 35.20 2.57
1552 1703 7.390027 TGTTTTGAACCCTGAATTTTCTTTCA 58.610 30.769 0.00 0.00 34.55 2.69
1649 1806 1.935199 AGTGTGTCGGTAACAAAACGG 59.065 47.619 0.00 0.00 40.31 4.44
1708 1869 1.376609 GCAGGGGAACAATACCGCAG 61.377 60.000 0.00 0.00 41.77 5.18
1754 1915 1.955778 TGCTTCAATGGTGGAACTGTG 59.044 47.619 0.00 0.00 36.74 3.66
1769 1930 1.750778 CATAACACCCCACCATGCTTC 59.249 52.381 0.00 0.00 0.00 3.86
1773 1934 0.817013 GTGCATAACACCCCACCATG 59.183 55.000 0.00 0.00 44.02 3.66
1789 1951 6.503589 TGTGGGTACAAATACAATAAGTGC 57.496 37.500 0.00 0.00 32.88 4.40
1842 2011 1.462283 CACCACGAACTGATTGCAGAG 59.538 52.381 0.00 0.00 45.17 3.35
1906 2075 3.136123 CATCCCGCTGCCAACCAG 61.136 66.667 0.00 0.00 44.67 4.00
1990 2164 8.646900 AGCTATCCACTTAAAACAAATCCAAAA 58.353 29.630 0.00 0.00 0.00 2.44
2016 2191 1.075601 ATGAAACAGGGGAAGCCTGA 58.924 50.000 0.00 0.00 38.52 3.86
2019 2194 1.923356 TTCATGAAACAGGGGAAGCC 58.077 50.000 5.45 0.00 0.00 4.35
2027 2202 4.229096 CGGTGGTTGATTTCATGAAACAG 58.771 43.478 22.71 6.49 32.51 3.16
2171 2347 5.308825 CCTAGAAGGTTCAAAAGCAGAAGA 58.691 41.667 0.00 0.00 0.00 2.87
2270 2446 4.732285 ACAGACACTAACAAGAAATGCG 57.268 40.909 0.00 0.00 0.00 4.73
2278 2454 8.231837 GGCGAAATAATTTACAGACACTAACAA 58.768 33.333 0.00 0.00 0.00 2.83
2340 2522 3.935818 TCCGGGGCATTCTTGTAATAA 57.064 42.857 0.00 0.00 0.00 1.40
2341 2523 3.456644 TCTTCCGGGGCATTCTTGTAATA 59.543 43.478 0.00 0.00 0.00 0.98
2342 2524 2.241176 TCTTCCGGGGCATTCTTGTAAT 59.759 45.455 0.00 0.00 0.00 1.89
2347 2529 1.075536 ACTTTCTTCCGGGGCATTCTT 59.924 47.619 0.00 0.00 0.00 2.52
2358 2540 7.710907 ACCAAAAGCTTCAAATAACTTTCTTCC 59.289 33.333 0.00 0.00 31.37 3.46
2397 2580 5.122396 CCACCTTGATGCTTTGAACTACTAC 59.878 44.000 0.00 0.00 0.00 2.73
2398 2581 5.012664 TCCACCTTGATGCTTTGAACTACTA 59.987 40.000 0.00 0.00 0.00 1.82
2399 2582 4.074970 CCACCTTGATGCTTTGAACTACT 58.925 43.478 0.00 0.00 0.00 2.57
2457 2665 6.148480 CCTTGCAGACCTATAATAGACAATGC 59.852 42.308 0.00 0.00 0.00 3.56
2472 2680 1.348036 ACAGGTAGTTCCTTGCAGACC 59.652 52.381 0.00 0.00 45.67 3.85
2476 2684 1.429930 TCCACAGGTAGTTCCTTGCA 58.570 50.000 0.00 0.00 45.67 4.08
2615 2825 7.853524 AGTTAACAATGTCATGTGCATTTTTG 58.146 30.769 18.26 11.79 34.68 2.44
2673 2884 8.656849 CAGCGTATAGTGACAAAGTAAGAAAAT 58.343 33.333 0.00 0.00 0.00 1.82
2683 2894 3.250744 GCAGTCAGCGTATAGTGACAAA 58.749 45.455 10.81 0.00 44.70 2.83
2700 2924 7.573968 AGACAACATTAAGAAGAAAAGCAGT 57.426 32.000 0.00 0.00 0.00 4.40
2711 2935 7.394016 TGCAAAGAGGATAGACAACATTAAGA 58.606 34.615 0.00 0.00 0.00 2.10
2722 2946 3.454858 AGGGAACTGCAAAGAGGATAGA 58.545 45.455 0.00 0.00 41.13 1.98
2723 2947 3.922171 AGGGAACTGCAAAGAGGATAG 57.078 47.619 0.00 0.00 41.13 2.08
2774 2999 2.357637 GGTCTGAACTCTCCTCGATCAG 59.642 54.545 3.99 3.99 39.04 2.90
2779 3004 0.814457 CCTGGTCTGAACTCTCCTCG 59.186 60.000 0.00 0.00 0.00 4.63
3103 3328 2.484264 AGTGGTTGCTTTCGATGCTAAC 59.516 45.455 11.32 12.19 0.00 2.34
3277 3502 5.762218 GCCAGATAGCAATCTCTTGTACATT 59.238 40.000 0.00 0.00 40.65 2.71
3376 3601 0.530650 TGCTATTGCGCCTACTGAGC 60.531 55.000 4.18 5.90 43.34 4.26
3433 3952 2.810852 CTCAAGCAAGTTCCTCTGTTCC 59.189 50.000 0.00 0.00 0.00 3.62
3541 4060 3.951769 AATGCAGGTGGAGCTGGCC 62.952 63.158 7.89 0.00 0.00 5.36
3568 4087 4.135153 ATGCCGACGCGCTTCTCT 62.135 61.111 12.41 0.00 38.08 3.10
3820 4339 2.363788 TCGGAGGTTTCAGATTGACG 57.636 50.000 0.00 0.00 0.00 4.35
3935 4454 5.279106 CCAAACAAAGATCAAAGCAGGATGA 60.279 40.000 0.00 0.00 39.69 2.92
3936 4455 4.927425 CCAAACAAAGATCAAAGCAGGATG 59.073 41.667 0.00 0.00 40.87 3.51
3942 4461 4.209911 GCTGTTCCAAACAAAGATCAAAGC 59.790 41.667 0.00 0.00 41.61 3.51
3943 4462 5.594926 AGCTGTTCCAAACAAAGATCAAAG 58.405 37.500 0.00 0.00 41.61 2.77
3944 4463 5.596836 AGCTGTTCCAAACAAAGATCAAA 57.403 34.783 0.00 0.00 41.61 2.69
3945 4464 6.707440 TTAGCTGTTCCAAACAAAGATCAA 57.293 33.333 0.00 0.00 41.61 2.57
3946 4465 6.899393 ATTAGCTGTTCCAAACAAAGATCA 57.101 33.333 0.00 0.00 41.61 2.92
3947 4466 7.486232 GCTAATTAGCTGTTCCAAACAAAGATC 59.514 37.037 26.79 0.00 45.62 2.75
3948 4467 7.315890 GCTAATTAGCTGTTCCAAACAAAGAT 58.684 34.615 26.79 0.00 45.62 2.40
3949 4468 6.677913 GCTAATTAGCTGTTCCAAACAAAGA 58.322 36.000 26.79 0.00 45.62 2.52
3950 4469 6.934561 GCTAATTAGCTGTTCCAAACAAAG 57.065 37.500 26.79 0.00 45.62 2.77
3971 4490 8.823818 CAATTTCTTTTCTGAAGACAAAATGCT 58.176 29.630 0.00 0.00 0.00 3.79
3972 4491 8.066000 CCAATTTCTTTTCTGAAGACAAAATGC 58.934 33.333 0.00 0.00 0.00 3.56
3973 4492 9.316730 TCCAATTTCTTTTCTGAAGACAAAATG 57.683 29.630 0.00 0.00 0.00 2.32
3974 4493 9.317936 GTCCAATTTCTTTTCTGAAGACAAAAT 57.682 29.630 0.00 0.00 0.00 1.82
3975 4494 8.310382 TGTCCAATTTCTTTTCTGAAGACAAAA 58.690 29.630 0.00 0.00 30.15 2.44
3976 4495 7.835822 TGTCCAATTTCTTTTCTGAAGACAAA 58.164 30.769 0.00 0.00 30.15 2.83
3977 4496 7.403312 TGTCCAATTTCTTTTCTGAAGACAA 57.597 32.000 0.00 0.00 30.15 3.18
3978 4497 7.587037 ATGTCCAATTTCTTTTCTGAAGACA 57.413 32.000 6.01 6.01 34.38 3.41
3979 4498 8.137437 TGAATGTCCAATTTCTTTTCTGAAGAC 58.863 33.333 0.00 0.00 0.00 3.01
3980 4499 8.137437 GTGAATGTCCAATTTCTTTTCTGAAGA 58.863 33.333 0.00 0.00 0.00 2.87
3981 4500 8.139989 AGTGAATGTCCAATTTCTTTTCTGAAG 58.860 33.333 0.00 0.00 0.00 3.02
3982 4501 8.010733 AGTGAATGTCCAATTTCTTTTCTGAA 57.989 30.769 0.00 0.00 0.00 3.02
3983 4502 7.587037 AGTGAATGTCCAATTTCTTTTCTGA 57.413 32.000 0.00 0.00 0.00 3.27
3984 4503 8.139989 AGAAGTGAATGTCCAATTTCTTTTCTG 58.860 33.333 0.00 0.00 30.92 3.02
3985 4504 8.242729 AGAAGTGAATGTCCAATTTCTTTTCT 57.757 30.769 0.00 0.00 0.00 2.52
3988 4507 9.525826 AGATAGAAGTGAATGTCCAATTTCTTT 57.474 29.630 0.00 0.00 0.00 2.52
3989 4508 8.954350 CAGATAGAAGTGAATGTCCAATTTCTT 58.046 33.333 0.00 0.00 0.00 2.52
3990 4509 7.066766 GCAGATAGAAGTGAATGTCCAATTTCT 59.933 37.037 0.00 0.00 0.00 2.52
3991 4510 7.148188 TGCAGATAGAAGTGAATGTCCAATTTC 60.148 37.037 0.00 0.00 0.00 2.17
3992 4511 6.660521 TGCAGATAGAAGTGAATGTCCAATTT 59.339 34.615 0.00 0.00 0.00 1.82
3993 4512 6.182627 TGCAGATAGAAGTGAATGTCCAATT 58.817 36.000 0.00 0.00 0.00 2.32
3994 4513 5.748402 TGCAGATAGAAGTGAATGTCCAAT 58.252 37.500 0.00 0.00 0.00 3.16
3995 4514 5.164620 TGCAGATAGAAGTGAATGTCCAA 57.835 39.130 0.00 0.00 0.00 3.53
3996 4515 4.824479 TGCAGATAGAAGTGAATGTCCA 57.176 40.909 0.00 0.00 0.00 4.02
3997 4516 5.466058 CAGATGCAGATAGAAGTGAATGTCC 59.534 44.000 0.00 0.00 0.00 4.02
3998 4517 5.050227 GCAGATGCAGATAGAAGTGAATGTC 60.050 44.000 0.00 0.00 41.59 3.06
3999 4518 4.815308 GCAGATGCAGATAGAAGTGAATGT 59.185 41.667 0.00 0.00 41.59 2.71
4000 4519 5.345609 GCAGATGCAGATAGAAGTGAATG 57.654 43.478 0.00 0.00 41.59 2.67
4078 4629 2.817424 CATAGCTGCTCCCGCTCA 59.183 61.111 4.91 0.00 38.86 4.26
4663 5232 5.147162 CAAGTTAACGAAAATCACAGGAGC 58.853 41.667 0.00 0.00 0.00 4.70
4677 5246 2.032894 CACAGCTCACACCAAGTTAACG 60.033 50.000 0.00 0.00 0.00 3.18
4678 5247 2.943033 ACACAGCTCACACCAAGTTAAC 59.057 45.455 0.00 0.00 0.00 2.01
4700 5269 6.936900 ACGGCTACGGAAACTATAAGTCTATA 59.063 38.462 0.00 0.00 46.48 1.31
4701 5270 5.767168 ACGGCTACGGAAACTATAAGTCTAT 59.233 40.000 0.00 0.00 46.48 1.98
4702 5271 5.126067 ACGGCTACGGAAACTATAAGTCTA 58.874 41.667 0.00 0.00 46.48 2.59
4703 5272 3.950395 ACGGCTACGGAAACTATAAGTCT 59.050 43.478 0.00 0.00 46.48 3.24
4704 5273 4.298744 ACGGCTACGGAAACTATAAGTC 57.701 45.455 0.00 0.00 46.48 3.01
4705 5274 4.725790 AACGGCTACGGAAACTATAAGT 57.274 40.909 0.00 0.00 46.48 2.24
4706 5275 4.205792 CGAAACGGCTACGGAAACTATAAG 59.794 45.833 0.00 0.00 46.48 1.73
4707 5276 4.104776 CGAAACGGCTACGGAAACTATAA 58.895 43.478 0.00 0.00 46.48 0.98
4749 5318 1.748493 GGGACTCAAAACACTTGCACA 59.252 47.619 0.00 0.00 0.00 4.57
4824 6013 7.008628 GCAACATGATAACTTTGCTACACATTC 59.991 37.037 0.00 0.00 40.97 2.67
4901 6090 5.050972 GCATAGACAGTACTACAATTTCGGC 60.051 44.000 0.00 0.00 0.00 5.54
4903 6092 6.530181 TGTGCATAGACAGTACTACAATTTCG 59.470 38.462 0.00 0.00 0.00 3.46
4909 6098 8.465273 AAGATATGTGCATAGACAGTACTACA 57.535 34.615 0.00 0.00 0.00 2.74
4918 6111 9.608617 CAAATGATCAAAGATATGTGCATAGAC 57.391 33.333 0.00 0.00 0.00 2.59
5047 6244 2.305052 TCAACCGGACTACTCTCTCTCA 59.695 50.000 9.46 0.00 0.00 3.27
5048 6245 2.988570 TCAACCGGACTACTCTCTCTC 58.011 52.381 9.46 0.00 0.00 3.20
5049 6246 3.655615 ATCAACCGGACTACTCTCTCT 57.344 47.619 9.46 0.00 0.00 3.10
5052 6249 3.025262 AGGAATCAACCGGACTACTCTC 58.975 50.000 9.46 0.00 34.73 3.20
5053 6250 3.103080 AGGAATCAACCGGACTACTCT 57.897 47.619 9.46 0.00 34.73 3.24
5054 6251 3.889520 AAGGAATCAACCGGACTACTC 57.110 47.619 9.46 0.00 34.73 2.59
5055 6252 3.581332 TCAAAGGAATCAACCGGACTACT 59.419 43.478 9.46 0.00 34.73 2.57
5056 6253 3.934068 TCAAAGGAATCAACCGGACTAC 58.066 45.455 9.46 0.00 34.73 2.73
5063 6273 4.335416 TCTCACCATCAAAGGAATCAACC 58.665 43.478 0.00 0.00 0.00 3.77
5078 6288 0.471780 TTCTGGTCAGGCTCTCACCA 60.472 55.000 8.76 8.76 37.89 4.17
5079 6289 0.687354 TTTCTGGTCAGGCTCTCACC 59.313 55.000 0.00 0.61 0.00 4.02
5080 6290 2.626840 GATTTCTGGTCAGGCTCTCAC 58.373 52.381 0.00 0.00 0.00 3.51
5081 6291 1.205655 CGATTTCTGGTCAGGCTCTCA 59.794 52.381 0.00 0.00 0.00 3.27
5082 6292 1.933247 CGATTTCTGGTCAGGCTCTC 58.067 55.000 0.00 0.00 0.00 3.20
5087 6331 1.134280 AGATGGCGATTTCTGGTCAGG 60.134 52.381 0.00 0.00 0.00 3.86
5109 6353 1.786579 GTTGTTCCTTTGCATTGACGC 59.213 47.619 0.00 0.00 0.00 5.19
5110 6354 2.393764 GGTTGTTCCTTTGCATTGACG 58.606 47.619 0.00 0.00 0.00 4.35
5123 6367 0.179067 TGAGGTGTCACGGGTTGTTC 60.179 55.000 0.00 0.00 0.00 3.18
5125 6369 0.253610 TTTGAGGTGTCACGGGTTGT 59.746 50.000 0.00 0.00 30.10 3.32
5127 6371 0.253610 TGTTTGAGGTGTCACGGGTT 59.746 50.000 0.00 0.00 30.10 4.11
5128 6372 0.253610 TTGTTTGAGGTGTCACGGGT 59.746 50.000 0.00 0.00 30.10 5.28
5129 6373 0.944386 CTTGTTTGAGGTGTCACGGG 59.056 55.000 0.00 0.00 30.10 5.28
5130 6374 1.867233 CTCTTGTTTGAGGTGTCACGG 59.133 52.381 0.00 0.00 30.10 4.94
5131 6375 2.821546 TCTCTTGTTTGAGGTGTCACG 58.178 47.619 0.00 0.00 34.98 4.35
5132 6376 5.066505 ACAATTCTCTTGTTTGAGGTGTCAC 59.933 40.000 0.00 0.00 34.98 3.67
5133 6377 5.192927 ACAATTCTCTTGTTTGAGGTGTCA 58.807 37.500 0.00 0.00 34.98 3.58
5134 6378 5.757850 ACAATTCTCTTGTTTGAGGTGTC 57.242 39.130 0.00 0.00 34.98 3.67
5136 6380 5.973565 GTCAACAATTCTCTTGTTTGAGGTG 59.026 40.000 0.80 0.00 40.30 4.00
5137 6381 5.067805 GGTCAACAATTCTCTTGTTTGAGGT 59.932 40.000 0.80 0.00 40.30 3.85
5138 6382 5.067674 TGGTCAACAATTCTCTTGTTTGAGG 59.932 40.000 0.80 0.00 40.30 3.86
5139 6383 6.135290 TGGTCAACAATTCTCTTGTTTGAG 57.865 37.500 0.80 0.00 40.30 3.02
5144 6388 6.713762 TGATTTGGTCAACAATTCTCTTGT 57.286 33.333 0.00 0.00 39.20 3.16
5156 6400 6.461370 CCACAGAATCTGTTTGATTTGGTCAA 60.461 38.462 13.99 0.00 42.59 3.18
5218 6462 7.658525 TTTATGGTGTGGAAAAGATGCATAT 57.341 32.000 0.00 0.00 0.00 1.78
5219 6463 7.560991 AGATTTATGGTGTGGAAAAGATGCATA 59.439 33.333 0.00 0.00 0.00 3.14
5236 6480 5.360591 AGAAACCTGCGTAGAGATTTATGG 58.639 41.667 0.53 0.00 0.00 2.74
5249 6493 2.670414 CTGCTTTCTAGAGAAACCTGCG 59.330 50.000 0.46 0.00 38.94 5.18
5250 6494 3.931578 TCTGCTTTCTAGAGAAACCTGC 58.068 45.455 0.46 4.57 38.94 4.85
5251 6495 4.502962 CCTCTGCTTTCTAGAGAAACCTG 58.497 47.826 0.46 0.32 43.41 4.00
5252 6496 3.517500 CCCTCTGCTTTCTAGAGAAACCT 59.482 47.826 0.46 0.00 43.41 3.50
5276 6527 8.996024 AGTAAGAAAGAACTAAAGCAGAGATC 57.004 34.615 0.00 0.00 0.00 2.75
5283 6534 6.183360 CGCCAGTAGTAAGAAAGAACTAAAGC 60.183 42.308 0.00 0.00 30.32 3.51
5288 6548 3.006537 TGCGCCAGTAGTAAGAAAGAACT 59.993 43.478 4.18 0.00 0.00 3.01
5311 6571 1.297456 GCTGTCTGCTGACCTTGCTC 61.297 60.000 19.64 0.95 42.28 4.26
5318 6578 1.857217 CATATCACGCTGTCTGCTGAC 59.143 52.381 16.18 16.18 43.20 3.51
5330 6590 3.319122 TGACCATCTCTGTCCATATCACG 59.681 47.826 0.00 0.00 31.60 4.35
5349 7294 0.179034 GATGTGCCTCCCATCCTGAC 60.179 60.000 0.00 0.00 34.02 3.51
5353 7298 1.150081 CCAGATGTGCCTCCCATCC 59.850 63.158 0.00 0.00 39.62 3.51
5364 7309 6.817765 ACAAAAATATCACGAACCAGATGT 57.182 33.333 0.00 0.00 0.00 3.06
5375 7320 7.926018 ACAACTCCAAGGAAACAAAAATATCAC 59.074 33.333 0.00 0.00 0.00 3.06
5403 7593 6.486993 GGAACTCAAACTTCAAGTAATGTCCT 59.513 38.462 0.00 0.00 0.00 3.85
5404 7594 6.486993 AGGAACTCAAACTTCAAGTAATGTCC 59.513 38.462 0.00 0.00 0.00 4.02
5405 7595 7.497925 AGGAACTCAAACTTCAAGTAATGTC 57.502 36.000 0.00 0.00 0.00 3.06
5491 7691 1.743958 AGACGAGGAACATGAGTACGG 59.256 52.381 0.00 0.00 0.00 4.02
5493 7693 2.753452 TGGAGACGAGGAACATGAGTAC 59.247 50.000 0.00 0.00 0.00 2.73
5528 8072 8.514594 CAGAATGCAGGAAAATAAGTGTTTAGA 58.485 33.333 0.00 0.00 0.00 2.10
5537 8081 6.204495 GGCAAAAACAGAATGCAGGAAAATAA 59.796 34.615 0.00 0.00 42.53 1.40
5544 8088 1.070445 TGGGCAAAAACAGAATGCAGG 59.930 47.619 0.00 0.00 42.53 4.85
5583 8145 6.316890 ACAAATATAATTTCGGTTACCAGCGT 59.683 34.615 1.13 0.00 44.52 5.07
5584 8146 6.721321 ACAAATATAATTTCGGTTACCAGCG 58.279 36.000 1.13 0.00 45.61 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.