Multiple sequence alignment - TraesCS5B01G377200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G377200 chr5B 100.000 3599 0 0 1 3599 554762709 554766307 0.000000e+00 6647
1 TraesCS5B01G377200 chr5B 92.806 556 31 5 2135 2681 554773226 554773781 0.000000e+00 797
2 TraesCS5B01G377200 chr5B 91.667 144 11 1 1949 2091 554773082 554773225 7.880000e-47 198
3 TraesCS5B01G377200 chr5A 92.134 3153 160 42 480 3589 573050484 573053591 0.000000e+00 4368
4 TraesCS5B01G377200 chr5D 92.136 2378 104 26 480 2816 454020866 454023201 0.000000e+00 3278
5 TraesCS5B01G377200 chr5D 86.962 790 59 12 2816 3589 454024922 454025683 0.000000e+00 848
6 TraesCS5B01G377200 chr7A 81.741 471 63 11 14 473 659583858 659584316 4.390000e-99 372
7 TraesCS5B01G377200 chr7A 78.706 479 77 12 11 477 491990715 491991180 2.720000e-76 296
8 TraesCS5B01G377200 chr2B 81.718 454 68 12 28 477 736393152 736392710 7.340000e-97 364
9 TraesCS5B01G377200 chr2B 82.243 214 35 2 2937 3147 47378570 47378783 7.940000e-42 182
10 TraesCS5B01G377200 chr4D 81.013 474 62 17 11 474 423433477 423433022 5.720000e-93 351
11 TraesCS5B01G377200 chr3A 79.281 473 66 17 15 473 28031070 28031524 5.840000e-78 302
12 TraesCS5B01G377200 chr3A 80.874 366 50 12 29 381 25114585 25114943 1.650000e-68 270
13 TraesCS5B01G377200 chr6A 78.645 487 74 14 6 473 20761269 20761744 2.720000e-76 296
14 TraesCS5B01G377200 chr6B 78.788 462 67 20 26 476 591261766 591261325 7.610000e-72 281
15 TraesCS5B01G377200 chr2A 81.227 277 30 10 207 473 714225218 714225482 1.690000e-48 204
16 TraesCS5B01G377200 chr7D 83.981 206 29 4 2941 3145 498243298 498243096 1.020000e-45 195
17 TraesCS5B01G377200 chr3B 83.673 196 31 1 2937 3132 482482104 482482298 2.210000e-42 183
18 TraesCS5B01G377200 chr2D 81.776 214 36 3 2937 3147 29255604 29255391 3.690000e-40 176
19 TraesCS5B01G377200 chr2D 81.517 211 30 7 2941 3147 189848355 189848560 7.990000e-37 165
20 TraesCS5B01G377200 chr2D 86.207 145 19 1 2941 3085 592408682 592408539 4.810000e-34 156
21 TraesCS5B01G377200 chr4A 87.826 115 14 0 2996 3110 455925954 455925840 6.270000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G377200 chr5B 554762709 554766307 3598 False 6647.0 6647 100.0000 1 3599 1 chr5B.!!$F1 3598
1 TraesCS5B01G377200 chr5B 554773082 554773781 699 False 497.5 797 92.2365 1949 2681 2 chr5B.!!$F2 732
2 TraesCS5B01G377200 chr5A 573050484 573053591 3107 False 4368.0 4368 92.1340 480 3589 1 chr5A.!!$F1 3109
3 TraesCS5B01G377200 chr5D 454020866 454025683 4817 False 2063.0 3278 89.5490 480 3589 2 chr5D.!!$F1 3109

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.038599 AAATTACCCACCCCGTCACC 59.961 55.0 0.0 0.0 0.0 4.02 F
156 157 0.108963 CCACCCTGTCACCCGTAAAA 59.891 55.0 0.0 0.0 0.0 1.52 F
1068 1102 0.109272 GAGTGATCCGCTTCGTGACA 60.109 55.0 0.0 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1488 1543 0.319900 CGCTGTGCTGTAGGTTCAGT 60.320 55.000 0.00 0.00 37.70 3.41 R
1878 1936 1.081376 CTTCAGGTTCGCGACGTCT 60.081 57.895 9.15 3.41 0.00 4.18 R
2939 4733 1.419762 GGGGGTGTTCCAAAGCAAAAT 59.580 47.619 0.00 0.00 37.22 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.368655 GTGTGTCATCAAAATGCCCC 57.631 50.000 0.00 0.00 32.58 5.80
20 21 1.895131 GTGTGTCATCAAAATGCCCCT 59.105 47.619 0.00 0.00 32.58 4.79
21 22 3.088532 GTGTGTCATCAAAATGCCCCTA 58.911 45.455 0.00 0.00 32.58 3.53
22 23 3.701040 GTGTGTCATCAAAATGCCCCTAT 59.299 43.478 0.00 0.00 32.58 2.57
23 24 3.700539 TGTGTCATCAAAATGCCCCTATG 59.299 43.478 0.00 0.00 32.58 2.23
24 25 3.068590 GTGTCATCAAAATGCCCCTATGG 59.931 47.826 0.00 0.00 32.58 2.74
25 26 3.299503 GTCATCAAAATGCCCCTATGGT 58.700 45.455 0.00 0.00 36.04 3.55
26 27 3.706086 GTCATCAAAATGCCCCTATGGTT 59.294 43.478 0.00 0.00 36.04 3.67
27 28 3.705579 TCATCAAAATGCCCCTATGGTTG 59.294 43.478 0.00 0.00 36.04 3.77
28 29 3.464720 TCAAAATGCCCCTATGGTTGA 57.535 42.857 0.00 0.00 36.04 3.18
29 30 3.784178 TCAAAATGCCCCTATGGTTGAA 58.216 40.909 0.00 0.00 36.04 2.69
30 31 3.768757 TCAAAATGCCCCTATGGTTGAAG 59.231 43.478 0.00 0.00 36.04 3.02
31 32 3.473113 AAATGCCCCTATGGTTGAAGT 57.527 42.857 0.00 0.00 36.04 3.01
32 33 4.601406 AAATGCCCCTATGGTTGAAGTA 57.399 40.909 0.00 0.00 36.04 2.24
33 34 4.601406 AATGCCCCTATGGTTGAAGTAA 57.399 40.909 0.00 0.00 36.04 2.24
34 35 4.601406 ATGCCCCTATGGTTGAAGTAAA 57.399 40.909 0.00 0.00 36.04 2.01
35 36 4.601406 TGCCCCTATGGTTGAAGTAAAT 57.399 40.909 0.00 0.00 36.04 1.40
36 37 4.941713 TGCCCCTATGGTTGAAGTAAATT 58.058 39.130 0.00 0.00 36.04 1.82
37 38 6.080969 TGCCCCTATGGTTGAAGTAAATTA 57.919 37.500 0.00 0.00 36.04 1.40
38 39 5.889289 TGCCCCTATGGTTGAAGTAAATTAC 59.111 40.000 0.00 0.00 36.04 1.89
39 40 5.301045 GCCCCTATGGTTGAAGTAAATTACC 59.699 44.000 0.00 0.00 36.04 2.85
40 41 5.831525 CCCCTATGGTTGAAGTAAATTACCC 59.168 44.000 0.00 0.00 0.00 3.69
41 42 6.428295 CCCTATGGTTGAAGTAAATTACCCA 58.572 40.000 0.00 0.35 0.00 4.51
42 43 6.320418 CCCTATGGTTGAAGTAAATTACCCAC 59.680 42.308 0.00 0.00 0.00 4.61
43 44 6.320418 CCTATGGTTGAAGTAAATTACCCACC 59.680 42.308 0.00 2.30 0.00 4.61
44 45 4.409187 TGGTTGAAGTAAATTACCCACCC 58.591 43.478 0.00 1.81 0.00 4.61
45 46 3.765511 GGTTGAAGTAAATTACCCACCCC 59.234 47.826 0.00 0.00 0.00 4.95
46 47 3.353370 TGAAGTAAATTACCCACCCCG 57.647 47.619 0.00 0.00 0.00 5.73
47 48 2.643801 TGAAGTAAATTACCCACCCCGT 59.356 45.455 0.00 0.00 0.00 5.28
48 49 3.273434 GAAGTAAATTACCCACCCCGTC 58.727 50.000 0.00 0.00 0.00 4.79
49 50 2.268107 AGTAAATTACCCACCCCGTCA 58.732 47.619 0.00 0.00 0.00 4.35
50 51 2.026915 AGTAAATTACCCACCCCGTCAC 60.027 50.000 0.00 0.00 0.00 3.67
51 52 0.038599 AAATTACCCACCCCGTCACC 59.961 55.000 0.00 0.00 0.00 4.02
52 53 1.855441 AATTACCCACCCCGTCACCC 61.855 60.000 0.00 0.00 0.00 4.61
55 56 4.726254 CCCACCCCGTCACCCCTA 62.726 72.222 0.00 0.00 0.00 3.53
56 57 2.608368 CCACCCCGTCACCCCTAA 60.608 66.667 0.00 0.00 0.00 2.69
57 58 2.666098 CCACCCCGTCACCCCTAAG 61.666 68.421 0.00 0.00 0.00 2.18
58 59 1.916777 CACCCCGTCACCCCTAAGT 60.917 63.158 0.00 0.00 0.00 2.24
59 60 0.615544 CACCCCGTCACCCCTAAGTA 60.616 60.000 0.00 0.00 0.00 2.24
60 61 0.116940 ACCCCGTCACCCCTAAGTAA 59.883 55.000 0.00 0.00 0.00 2.24
61 62 1.278537 CCCCGTCACCCCTAAGTAAA 58.721 55.000 0.00 0.00 0.00 2.01
62 63 1.629861 CCCCGTCACCCCTAAGTAAAA 59.370 52.381 0.00 0.00 0.00 1.52
63 64 2.040145 CCCCGTCACCCCTAAGTAAAAA 59.960 50.000 0.00 0.00 0.00 1.94
88 89 9.936759 AAAAACTCTTTGTTAATTGTTTCTCCA 57.063 25.926 0.00 0.00 38.03 3.86
89 90 9.936759 AAAACTCTTTGTTAATTGTTTCTCCAA 57.063 25.926 0.00 0.00 38.03 3.53
90 91 9.936759 AAACTCTTTGTTAATTGTTTCTCCAAA 57.063 25.926 0.00 0.00 38.03 3.28
98 99 9.372369 TGTTAATTGTTTCTCCAAATTTTTCGT 57.628 25.926 0.00 0.00 0.00 3.85
99 100 9.843874 GTTAATTGTTTCTCCAAATTTTTCGTC 57.156 29.630 0.00 0.00 0.00 4.20
100 101 9.810545 TTAATTGTTTCTCCAAATTTTTCGTCT 57.189 25.926 0.00 0.00 0.00 4.18
101 102 8.716646 AATTGTTTCTCCAAATTTTTCGTCTT 57.283 26.923 0.00 0.00 0.00 3.01
102 103 8.716646 ATTGTTTCTCCAAATTTTTCGTCTTT 57.283 26.923 0.00 0.00 0.00 2.52
103 104 7.749539 TGTTTCTCCAAATTTTTCGTCTTTC 57.250 32.000 0.00 0.00 0.00 2.62
104 105 7.316640 TGTTTCTCCAAATTTTTCGTCTTTCA 58.683 30.769 0.00 0.00 0.00 2.69
105 106 7.978975 TGTTTCTCCAAATTTTTCGTCTTTCAT 59.021 29.630 0.00 0.00 0.00 2.57
106 107 8.817100 GTTTCTCCAAATTTTTCGTCTTTCATT 58.183 29.630 0.00 0.00 0.00 2.57
107 108 7.928908 TCTCCAAATTTTTCGTCTTTCATTG 57.071 32.000 0.00 0.00 0.00 2.82
108 109 7.488322 TCTCCAAATTTTTCGTCTTTCATTGT 58.512 30.769 0.00 0.00 0.00 2.71
109 110 8.625651 TCTCCAAATTTTTCGTCTTTCATTGTA 58.374 29.630 0.00 0.00 0.00 2.41
110 111 9.243637 CTCCAAATTTTTCGTCTTTCATTGTAA 57.756 29.630 0.00 0.00 0.00 2.41
111 112 9.026074 TCCAAATTTTTCGTCTTTCATTGTAAC 57.974 29.630 0.00 0.00 0.00 2.50
112 113 9.030301 CCAAATTTTTCGTCTTTCATTGTAACT 57.970 29.630 0.00 0.00 0.00 2.24
113 114 9.833894 CAAATTTTTCGTCTTTCATTGTAACTG 57.166 29.630 0.00 0.00 0.00 3.16
114 115 9.581099 AAATTTTTCGTCTTTCATTGTAACTGT 57.419 25.926 0.00 0.00 0.00 3.55
115 116 8.782533 ATTTTTCGTCTTTCATTGTAACTGTC 57.217 30.769 0.00 0.00 0.00 3.51
116 117 6.912203 TTTCGTCTTTCATTGTAACTGTCA 57.088 33.333 0.00 0.00 0.00 3.58
117 118 5.900339 TCGTCTTTCATTGTAACTGTCAC 57.100 39.130 0.00 0.00 0.00 3.67
118 119 4.443063 TCGTCTTTCATTGTAACTGTCACG 59.557 41.667 0.00 0.00 0.00 4.35
119 120 4.443063 CGTCTTTCATTGTAACTGTCACGA 59.557 41.667 0.00 0.00 0.00 4.35
120 121 5.051307 CGTCTTTCATTGTAACTGTCACGAA 60.051 40.000 0.00 0.00 0.00 3.85
121 122 6.508880 CGTCTTTCATTGTAACTGTCACGAAA 60.509 38.462 0.00 0.00 0.00 3.46
122 123 7.184106 GTCTTTCATTGTAACTGTCACGAAAA 58.816 34.615 0.00 0.00 0.00 2.29
123 124 7.855904 GTCTTTCATTGTAACTGTCACGAAAAT 59.144 33.333 0.00 0.00 0.00 1.82
124 125 8.402472 TCTTTCATTGTAACTGTCACGAAAATT 58.598 29.630 0.00 0.00 0.00 1.82
125 126 7.906611 TTCATTGTAACTGTCACGAAAATTG 57.093 32.000 0.00 0.00 0.00 2.32
126 127 7.252965 TCATTGTAACTGTCACGAAAATTGA 57.747 32.000 0.00 0.00 0.00 2.57
127 128 7.698628 TCATTGTAACTGTCACGAAAATTGAA 58.301 30.769 0.00 0.00 0.00 2.69
128 129 8.184848 TCATTGTAACTGTCACGAAAATTGAAA 58.815 29.630 0.00 0.00 0.00 2.69
129 130 8.967218 CATTGTAACTGTCACGAAAATTGAAAT 58.033 29.630 0.00 0.00 0.00 2.17
138 139 9.413048 TGTCACGAAAATTGAAATAAATTACCC 57.587 29.630 0.00 0.00 0.00 3.69
139 140 9.413048 GTCACGAAAATTGAAATAAATTACCCA 57.587 29.630 0.00 0.00 0.00 4.51
140 141 9.413048 TCACGAAAATTGAAATAAATTACCCAC 57.587 29.630 0.00 0.00 0.00 4.61
141 142 8.652463 CACGAAAATTGAAATAAATTACCCACC 58.348 33.333 0.00 0.00 0.00 4.61
142 143 7.820386 ACGAAAATTGAAATAAATTACCCACCC 59.180 33.333 0.00 0.00 0.00 4.61
143 144 8.038351 CGAAAATTGAAATAAATTACCCACCCT 58.962 33.333 0.00 0.00 0.00 4.34
144 145 9.161629 GAAAATTGAAATAAATTACCCACCCTG 57.838 33.333 0.00 0.00 0.00 4.45
145 146 7.806680 AATTGAAATAAATTACCCACCCTGT 57.193 32.000 0.00 0.00 0.00 4.00
146 147 6.844097 TTGAAATAAATTACCCACCCTGTC 57.156 37.500 0.00 0.00 0.00 3.51
147 148 5.893500 TGAAATAAATTACCCACCCTGTCA 58.106 37.500 0.00 0.00 0.00 3.58
148 149 5.712917 TGAAATAAATTACCCACCCTGTCAC 59.287 40.000 0.00 0.00 0.00 3.67
149 150 2.597578 AAATTACCCACCCTGTCACC 57.402 50.000 0.00 0.00 0.00 4.02
150 151 0.702316 AATTACCCACCCTGTCACCC 59.298 55.000 0.00 0.00 0.00 4.61
151 152 1.559065 ATTACCCACCCTGTCACCCG 61.559 60.000 0.00 0.00 0.00 5.28
152 153 2.968902 TTACCCACCCTGTCACCCGT 62.969 60.000 0.00 0.00 0.00 5.28
153 154 2.091640 TACCCACCCTGTCACCCGTA 62.092 60.000 0.00 0.00 0.00 4.02
154 155 2.218454 CCCACCCTGTCACCCGTAA 61.218 63.158 0.00 0.00 0.00 3.18
155 156 1.756024 CCACCCTGTCACCCGTAAA 59.244 57.895 0.00 0.00 0.00 2.01
156 157 0.108963 CCACCCTGTCACCCGTAAAA 59.891 55.000 0.00 0.00 0.00 1.52
157 158 1.519408 CACCCTGTCACCCGTAAAAG 58.481 55.000 0.00 0.00 0.00 2.27
158 159 1.134228 ACCCTGTCACCCGTAAAAGT 58.866 50.000 0.00 0.00 0.00 2.66
159 160 1.202722 ACCCTGTCACCCGTAAAAGTG 60.203 52.381 0.00 0.00 35.24 3.16
160 161 1.071071 CCCTGTCACCCGTAAAAGTGA 59.929 52.381 0.00 0.00 40.61 3.41
161 162 2.485835 CCCTGTCACCCGTAAAAGTGAA 60.486 50.000 0.00 0.00 44.19 3.18
162 163 3.207778 CCTGTCACCCGTAAAAGTGAAA 58.792 45.455 0.00 0.00 44.19 2.69
163 164 3.628487 CCTGTCACCCGTAAAAGTGAAAA 59.372 43.478 0.00 0.00 44.19 2.29
164 165 4.096682 CCTGTCACCCGTAAAAGTGAAAAA 59.903 41.667 0.00 0.00 44.19 1.94
180 181 2.910688 AAAAACGAGTGCTCCTCTGA 57.089 45.000 0.00 0.00 38.11 3.27
181 182 2.910688 AAAACGAGTGCTCCTCTGAA 57.089 45.000 0.00 0.00 38.11 3.02
182 183 3.409026 AAAACGAGTGCTCCTCTGAAT 57.591 42.857 0.00 0.00 38.11 2.57
183 184 3.409026 AAACGAGTGCTCCTCTGAATT 57.591 42.857 0.00 0.00 38.11 2.17
184 185 4.537135 AAACGAGTGCTCCTCTGAATTA 57.463 40.909 0.00 0.00 38.11 1.40
185 186 4.744795 AACGAGTGCTCCTCTGAATTAT 57.255 40.909 0.00 0.00 38.11 1.28
186 187 4.744795 ACGAGTGCTCCTCTGAATTATT 57.255 40.909 0.00 0.00 38.11 1.40
187 188 4.688021 ACGAGTGCTCCTCTGAATTATTC 58.312 43.478 0.00 0.00 38.11 1.75
188 189 3.733224 CGAGTGCTCCTCTGAATTATTCG 59.267 47.826 0.23 0.00 38.11 3.34
189 190 4.688021 GAGTGCTCCTCTGAATTATTCGT 58.312 43.478 0.23 0.00 37.22 3.85
190 191 5.505819 CGAGTGCTCCTCTGAATTATTCGTA 60.506 44.000 0.23 0.00 38.11 3.43
191 192 5.593010 AGTGCTCCTCTGAATTATTCGTAC 58.407 41.667 0.23 0.00 0.00 3.67
192 193 5.127194 AGTGCTCCTCTGAATTATTCGTACA 59.873 40.000 0.23 0.00 0.00 2.90
193 194 5.986135 GTGCTCCTCTGAATTATTCGTACAT 59.014 40.000 0.23 0.00 0.00 2.29
194 195 6.144724 GTGCTCCTCTGAATTATTCGTACATC 59.855 42.308 0.23 0.00 0.00 3.06
195 196 6.183360 TGCTCCTCTGAATTATTCGTACATCA 60.183 38.462 0.23 0.00 0.00 3.07
196 197 6.870965 GCTCCTCTGAATTATTCGTACATCAT 59.129 38.462 0.23 0.00 0.00 2.45
197 198 8.029522 GCTCCTCTGAATTATTCGTACATCATA 58.970 37.037 0.23 0.00 0.00 2.15
198 199 9.566530 CTCCTCTGAATTATTCGTACATCATAG 57.433 37.037 0.23 0.00 0.00 2.23
199 200 8.523658 TCCTCTGAATTATTCGTACATCATAGG 58.476 37.037 0.23 0.00 34.34 2.57
200 201 7.761704 CCTCTGAATTATTCGTACATCATAGGG 59.238 40.741 0.23 0.00 31.29 3.53
201 202 7.097192 TCTGAATTATTCGTACATCATAGGGC 58.903 38.462 0.23 0.00 0.00 5.19
202 203 6.170506 TGAATTATTCGTACATCATAGGGCC 58.829 40.000 0.00 0.00 0.00 5.80
203 204 4.546829 TTATTCGTACATCATAGGGCCC 57.453 45.455 16.46 16.46 0.00 5.80
204 205 2.097110 TTCGTACATCATAGGGCCCT 57.903 50.000 31.35 31.35 0.00 5.19
205 206 2.097110 TCGTACATCATAGGGCCCTT 57.903 50.000 34.04 14.06 0.00 3.95
206 207 1.968493 TCGTACATCATAGGGCCCTTC 59.032 52.381 34.04 9.44 0.00 3.46
207 208 1.691976 CGTACATCATAGGGCCCTTCA 59.308 52.381 34.04 14.66 0.00 3.02
208 209 2.289072 CGTACATCATAGGGCCCTTCAG 60.289 54.545 34.04 20.30 0.00 3.02
209 210 1.898863 ACATCATAGGGCCCTTCAGT 58.101 50.000 34.04 18.75 0.00 3.41
210 211 2.208872 ACATCATAGGGCCCTTCAGTT 58.791 47.619 34.04 12.43 0.00 3.16
211 212 2.582636 ACATCATAGGGCCCTTCAGTTT 59.417 45.455 34.04 6.04 0.00 2.66
212 213 3.011708 ACATCATAGGGCCCTTCAGTTTT 59.988 43.478 34.04 5.10 0.00 2.43
213 214 3.366052 TCATAGGGCCCTTCAGTTTTC 57.634 47.619 34.04 0.00 0.00 2.29
214 215 2.025321 TCATAGGGCCCTTCAGTTTTCC 60.025 50.000 34.04 0.00 0.00 3.13
215 216 1.451449 TAGGGCCCTTCAGTTTTCCA 58.549 50.000 34.04 4.03 0.00 3.53
216 217 0.786435 AGGGCCCTTCAGTTTTCCAT 59.214 50.000 22.28 0.00 0.00 3.41
217 218 1.186200 GGGCCCTTCAGTTTTCCATC 58.814 55.000 17.04 0.00 0.00 3.51
218 219 1.186200 GGCCCTTCAGTTTTCCATCC 58.814 55.000 0.00 0.00 0.00 3.51
219 220 1.549950 GGCCCTTCAGTTTTCCATCCA 60.550 52.381 0.00 0.00 0.00 3.41
220 221 2.460669 GCCCTTCAGTTTTCCATCCAT 58.539 47.619 0.00 0.00 0.00 3.41
221 222 2.428530 GCCCTTCAGTTTTCCATCCATC 59.571 50.000 0.00 0.00 0.00 3.51
222 223 2.684881 CCCTTCAGTTTTCCATCCATCG 59.315 50.000 0.00 0.00 0.00 3.84
223 224 3.347216 CCTTCAGTTTTCCATCCATCGT 58.653 45.455 0.00 0.00 0.00 3.73
224 225 3.127548 CCTTCAGTTTTCCATCCATCGTG 59.872 47.826 0.00 0.00 0.00 4.35
225 226 3.694043 TCAGTTTTCCATCCATCGTGA 57.306 42.857 0.00 0.00 0.00 4.35
226 227 3.599343 TCAGTTTTCCATCCATCGTGAG 58.401 45.455 0.00 0.00 0.00 3.51
228 229 3.372206 CAGTTTTCCATCCATCGTGAGAC 59.628 47.826 0.00 0.00 46.97 3.36
229 230 3.261897 AGTTTTCCATCCATCGTGAGACT 59.738 43.478 0.00 0.00 46.97 3.24
230 231 2.967599 TTCCATCCATCGTGAGACTG 57.032 50.000 0.00 0.00 46.97 3.51
231 232 2.143876 TCCATCCATCGTGAGACTGA 57.856 50.000 0.00 0.00 46.97 3.41
232 233 2.670939 TCCATCCATCGTGAGACTGAT 58.329 47.619 0.00 0.00 46.97 2.90
233 234 2.625314 TCCATCCATCGTGAGACTGATC 59.375 50.000 0.00 0.00 46.97 2.92
234 235 2.627221 CCATCCATCGTGAGACTGATCT 59.373 50.000 0.00 0.00 46.97 2.75
235 236 3.069300 CCATCCATCGTGAGACTGATCTT 59.931 47.826 0.00 0.00 46.97 2.40
236 237 4.442612 CCATCCATCGTGAGACTGATCTTT 60.443 45.833 0.00 0.00 46.97 2.52
237 238 4.808414 TCCATCGTGAGACTGATCTTTT 57.192 40.909 0.00 0.00 46.97 2.27
238 239 4.748892 TCCATCGTGAGACTGATCTTTTC 58.251 43.478 0.00 0.00 46.97 2.29
239 240 4.464244 TCCATCGTGAGACTGATCTTTTCT 59.536 41.667 0.00 0.00 46.97 2.52
240 241 5.047021 TCCATCGTGAGACTGATCTTTTCTT 60.047 40.000 0.00 0.00 46.97 2.52
241 242 5.641209 CCATCGTGAGACTGATCTTTTCTTT 59.359 40.000 0.00 0.00 46.97 2.52
242 243 6.148480 CCATCGTGAGACTGATCTTTTCTTTT 59.852 38.462 0.00 0.00 46.97 2.27
243 244 7.308229 CCATCGTGAGACTGATCTTTTCTTTTT 60.308 37.037 0.00 0.00 46.97 1.94
244 245 7.178712 TCGTGAGACTGATCTTTTCTTTTTC 57.821 36.000 0.00 0.00 34.34 2.29
245 246 6.986817 TCGTGAGACTGATCTTTTCTTTTTCT 59.013 34.615 0.00 0.00 34.34 2.52
246 247 7.495934 TCGTGAGACTGATCTTTTCTTTTTCTT 59.504 33.333 0.00 0.00 34.34 2.52
247 248 7.796197 CGTGAGACTGATCTTTTCTTTTTCTTC 59.204 37.037 0.00 0.00 34.34 2.87
248 249 7.796197 GTGAGACTGATCTTTTCTTTTTCTTCG 59.204 37.037 0.00 0.00 34.34 3.79
249 250 6.663565 AGACTGATCTTTTCTTTTTCTTCGC 58.336 36.000 0.00 0.00 0.00 4.70
250 251 6.260936 AGACTGATCTTTTCTTTTTCTTCGCA 59.739 34.615 0.00 0.00 0.00 5.10
251 252 6.974965 ACTGATCTTTTCTTTTTCTTCGCAT 58.025 32.000 0.00 0.00 0.00 4.73
252 253 8.099364 ACTGATCTTTTCTTTTTCTTCGCATA 57.901 30.769 0.00 0.00 0.00 3.14
253 254 8.017946 ACTGATCTTTTCTTTTTCTTCGCATAC 58.982 33.333 0.00 0.00 0.00 2.39
254 255 7.870826 TGATCTTTTCTTTTTCTTCGCATACA 58.129 30.769 0.00 0.00 0.00 2.29
255 256 8.514594 TGATCTTTTCTTTTTCTTCGCATACAT 58.485 29.630 0.00 0.00 0.00 2.29
256 257 8.679288 ATCTTTTCTTTTTCTTCGCATACATG 57.321 30.769 0.00 0.00 0.00 3.21
278 279 6.757897 TGCATCAAGGATGTACTTAAAAGG 57.242 37.500 7.92 0.00 41.60 3.11
279 280 6.480763 TGCATCAAGGATGTACTTAAAAGGA 58.519 36.000 7.92 0.00 41.60 3.36
280 281 6.945435 TGCATCAAGGATGTACTTAAAAGGAA 59.055 34.615 7.92 0.00 41.60 3.36
281 282 7.615365 TGCATCAAGGATGTACTTAAAAGGAAT 59.385 33.333 7.92 0.00 41.60 3.01
282 283 9.120538 GCATCAAGGATGTACTTAAAAGGAATA 57.879 33.333 7.92 0.00 41.60 1.75
285 286 9.444600 TCAAGGATGTACTTAAAAGGAATACAC 57.555 33.333 0.00 0.00 0.00 2.90
286 287 8.388103 CAAGGATGTACTTAAAAGGAATACACG 58.612 37.037 0.00 0.00 0.00 4.49
287 288 6.537660 AGGATGTACTTAAAAGGAATACACGC 59.462 38.462 0.00 0.00 0.00 5.34
288 289 6.314400 GGATGTACTTAAAAGGAATACACGCA 59.686 38.462 0.00 0.00 0.00 5.24
289 290 7.012044 GGATGTACTTAAAAGGAATACACGCAT 59.988 37.037 0.00 0.00 0.00 4.73
290 291 7.298507 TGTACTTAAAAGGAATACACGCATC 57.701 36.000 0.00 0.00 0.00 3.91
291 292 6.874664 TGTACTTAAAAGGAATACACGCATCA 59.125 34.615 0.00 0.00 0.00 3.07
292 293 6.811253 ACTTAAAAGGAATACACGCATCAA 57.189 33.333 0.00 0.00 0.00 2.57
293 294 6.842163 ACTTAAAAGGAATACACGCATCAAG 58.158 36.000 0.00 0.00 0.00 3.02
294 295 4.701956 AAAAGGAATACACGCATCAAGG 57.298 40.909 0.00 0.00 0.00 3.61
295 296 3.627395 AAGGAATACACGCATCAAGGA 57.373 42.857 0.00 0.00 0.00 3.36
296 297 3.845781 AGGAATACACGCATCAAGGAT 57.154 42.857 0.00 0.00 0.00 3.24
297 298 4.955811 AGGAATACACGCATCAAGGATA 57.044 40.909 0.00 0.00 0.00 2.59
298 299 5.290493 AGGAATACACGCATCAAGGATAA 57.710 39.130 0.00 0.00 0.00 1.75
299 300 5.680619 AGGAATACACGCATCAAGGATAAA 58.319 37.500 0.00 0.00 0.00 1.40
300 301 5.760253 AGGAATACACGCATCAAGGATAAAG 59.240 40.000 0.00 0.00 0.00 1.85
301 302 5.527582 GGAATACACGCATCAAGGATAAAGT 59.472 40.000 0.00 0.00 0.00 2.66
302 303 6.292919 GGAATACACGCATCAAGGATAAAGTC 60.293 42.308 0.00 0.00 0.00 3.01
314 315 3.729966 GGATAAAGTCCAACCTCGATCC 58.270 50.000 0.00 0.00 46.96 3.36
315 316 3.134081 GGATAAAGTCCAACCTCGATCCA 59.866 47.826 0.00 0.00 46.96 3.41
316 317 4.202367 GGATAAAGTCCAACCTCGATCCAT 60.202 45.833 0.00 0.00 46.96 3.41
317 318 3.721087 AAAGTCCAACCTCGATCCATT 57.279 42.857 0.00 0.00 0.00 3.16
318 319 2.698855 AGTCCAACCTCGATCCATTG 57.301 50.000 0.00 0.00 0.00 2.82
319 320 1.909302 AGTCCAACCTCGATCCATTGT 59.091 47.619 0.00 0.00 0.00 2.71
320 321 2.009774 GTCCAACCTCGATCCATTGTG 58.990 52.381 0.00 0.00 0.00 3.33
321 322 1.905894 TCCAACCTCGATCCATTGTGA 59.094 47.619 0.00 0.00 0.00 3.58
322 323 2.093500 TCCAACCTCGATCCATTGTGAG 60.093 50.000 0.00 0.00 0.00 3.51
323 324 1.667724 CAACCTCGATCCATTGTGAGC 59.332 52.381 0.00 0.00 0.00 4.26
324 325 0.179100 ACCTCGATCCATTGTGAGCG 60.179 55.000 6.49 6.49 44.95 5.03
325 326 0.179100 CCTCGATCCATTGTGAGCGT 60.179 55.000 10.89 0.00 44.04 5.07
326 327 1.067060 CCTCGATCCATTGTGAGCGTA 59.933 52.381 10.89 1.34 44.04 4.42
327 328 2.288457 CCTCGATCCATTGTGAGCGTAT 60.288 50.000 10.89 0.00 44.04 3.06
328 329 3.384668 CTCGATCCATTGTGAGCGTATT 58.615 45.455 10.89 0.00 44.04 1.89
329 330 4.546570 CTCGATCCATTGTGAGCGTATTA 58.453 43.478 10.89 0.00 44.04 0.98
330 331 4.939271 TCGATCCATTGTGAGCGTATTAA 58.061 39.130 10.89 0.00 44.04 1.40
331 332 5.353111 TCGATCCATTGTGAGCGTATTAAA 58.647 37.500 10.89 0.00 44.04 1.52
332 333 5.813157 TCGATCCATTGTGAGCGTATTAAAA 59.187 36.000 10.89 0.00 44.04 1.52
333 334 6.481976 TCGATCCATTGTGAGCGTATTAAAAT 59.518 34.615 10.89 0.00 44.04 1.82
334 335 6.574832 CGATCCATTGTGAGCGTATTAAAATG 59.425 38.462 5.12 0.00 39.18 2.32
335 336 5.577835 TCCATTGTGAGCGTATTAAAATGC 58.422 37.500 0.00 0.00 0.00 3.56
336 337 5.124617 TCCATTGTGAGCGTATTAAAATGCA 59.875 36.000 0.00 0.00 33.64 3.96
337 338 5.229887 CCATTGTGAGCGTATTAAAATGCAC 59.770 40.000 0.00 0.00 33.64 4.57
338 339 5.363979 TTGTGAGCGTATTAAAATGCACA 57.636 34.783 0.00 0.00 33.64 4.57
339 340 5.559427 TGTGAGCGTATTAAAATGCACAT 57.441 34.783 0.00 0.00 35.05 3.21
340 341 5.331098 TGTGAGCGTATTAAAATGCACATG 58.669 37.500 0.00 0.00 35.05 3.21
341 342 5.106357 TGTGAGCGTATTAAAATGCACATGT 60.106 36.000 0.00 0.00 35.05 3.21
342 343 5.452302 GTGAGCGTATTAAAATGCACATGTC 59.548 40.000 0.00 0.00 35.05 3.06
343 344 5.353956 TGAGCGTATTAAAATGCACATGTCT 59.646 36.000 0.00 0.00 33.64 3.41
344 345 6.128035 TGAGCGTATTAAAATGCACATGTCTT 60.128 34.615 0.00 0.00 33.64 3.01
345 346 7.065204 TGAGCGTATTAAAATGCACATGTCTTA 59.935 33.333 0.00 0.00 33.64 2.10
346 347 7.186804 AGCGTATTAAAATGCACATGTCTTAC 58.813 34.615 0.00 0.00 33.64 2.34
347 348 6.964370 GCGTATTAAAATGCACATGTCTTACA 59.036 34.615 0.00 0.00 0.00 2.41
348 349 7.643764 GCGTATTAAAATGCACATGTCTTACAT 59.356 33.333 0.00 0.00 39.91 2.29
349 350 9.158364 CGTATTAAAATGCACATGTCTTACATC 57.842 33.333 0.00 0.00 36.53 3.06
350 351 9.450807 GTATTAAAATGCACATGTCTTACATCC 57.549 33.333 0.00 0.00 36.53 3.51
351 352 4.621068 AAATGCACATGTCTTACATCCG 57.379 40.909 0.00 0.00 36.53 4.18
352 353 1.368641 TGCACATGTCTTACATCCGC 58.631 50.000 0.00 0.00 36.53 5.54
353 354 1.338579 TGCACATGTCTTACATCCGCA 60.339 47.619 0.00 8.19 39.24 5.69
354 355 1.942657 GCACATGTCTTACATCCGCAT 59.057 47.619 0.00 0.00 36.53 4.73
355 356 2.286595 GCACATGTCTTACATCCGCATG 60.287 50.000 0.00 0.00 36.53 4.06
356 357 3.266510 ACATGTCTTACATCCGCATGT 57.733 42.857 0.00 0.00 45.73 3.21
357 358 2.938451 ACATGTCTTACATCCGCATGTG 59.062 45.455 1.14 0.00 45.46 3.21
358 359 2.022764 TGTCTTACATCCGCATGTGG 57.977 50.000 19.75 19.75 43.54 4.17
359 360 1.277842 TGTCTTACATCCGCATGTGGT 59.722 47.619 24.28 8.62 43.54 4.16
360 361 1.665679 GTCTTACATCCGCATGTGGTG 59.334 52.381 24.28 21.65 43.54 4.17
378 379 7.573916 TGTGGTGCATAAAAATTCAAATACG 57.426 32.000 0.00 0.00 0.00 3.06
379 380 7.148641 TGTGGTGCATAAAAATTCAAATACGT 58.851 30.769 0.00 0.00 0.00 3.57
380 381 7.115520 TGTGGTGCATAAAAATTCAAATACGTG 59.884 33.333 0.00 0.00 0.00 4.49
381 382 7.115663 GTGGTGCATAAAAATTCAAATACGTGT 59.884 33.333 0.00 0.00 0.00 4.49
382 383 8.297426 TGGTGCATAAAAATTCAAATACGTGTA 58.703 29.630 0.00 0.00 0.00 2.90
383 384 9.296400 GGTGCATAAAAATTCAAATACGTGTAT 57.704 29.630 0.00 0.00 0.00 2.29
413 414 8.974408 CAATTATGCATGGAGTGTGAATATTTG 58.026 33.333 10.16 0.00 0.00 2.32
414 415 7.878547 TTATGCATGGAGTGTGAATATTTGA 57.121 32.000 10.16 0.00 0.00 2.69
415 416 6.778834 ATGCATGGAGTGTGAATATTTGAA 57.221 33.333 0.00 0.00 0.00 2.69
416 417 6.587206 TGCATGGAGTGTGAATATTTGAAA 57.413 33.333 0.00 0.00 0.00 2.69
417 418 6.389091 TGCATGGAGTGTGAATATTTGAAAC 58.611 36.000 0.00 0.00 0.00 2.78
418 419 6.209192 TGCATGGAGTGTGAATATTTGAAACT 59.791 34.615 0.00 0.00 0.00 2.66
419 420 7.092716 GCATGGAGTGTGAATATTTGAAACTT 58.907 34.615 0.00 0.00 0.00 2.66
420 421 7.062605 GCATGGAGTGTGAATATTTGAAACTTG 59.937 37.037 0.00 0.00 0.00 3.16
421 422 7.815840 TGGAGTGTGAATATTTGAAACTTGA 57.184 32.000 0.00 0.00 0.00 3.02
422 423 8.408043 TGGAGTGTGAATATTTGAAACTTGAT 57.592 30.769 0.00 0.00 0.00 2.57
423 424 8.859090 TGGAGTGTGAATATTTGAAACTTGATT 58.141 29.630 0.00 0.00 0.00 2.57
424 425 9.696917 GGAGTGTGAATATTTGAAACTTGATTT 57.303 29.630 0.00 0.00 0.00 2.17
451 452 8.996024 AAAACAACGATTTTATTATCCCCTTG 57.004 30.769 0.00 0.00 29.93 3.61
452 453 6.144078 ACAACGATTTTATTATCCCCTTGC 57.856 37.500 0.00 0.00 0.00 4.01
453 454 5.654650 ACAACGATTTTATTATCCCCTTGCA 59.345 36.000 0.00 0.00 0.00 4.08
454 455 6.153680 ACAACGATTTTATTATCCCCTTGCAA 59.846 34.615 0.00 0.00 0.00 4.08
455 456 6.144078 ACGATTTTATTATCCCCTTGCAAC 57.856 37.500 0.00 0.00 0.00 4.17
456 457 5.212194 CGATTTTATTATCCCCTTGCAACG 58.788 41.667 0.00 0.00 0.00 4.10
457 458 4.379339 TTTTATTATCCCCTTGCAACGC 57.621 40.909 0.00 0.00 0.00 4.84
458 459 2.719531 TATTATCCCCTTGCAACGCA 57.280 45.000 0.00 0.00 36.47 5.24
459 460 1.102978 ATTATCCCCTTGCAACGCAC 58.897 50.000 0.00 0.00 38.71 5.34
460 461 1.302383 TTATCCCCTTGCAACGCACG 61.302 55.000 0.00 0.00 38.71 5.34
468 469 4.279043 GCAACGCACGGGCCTTTT 62.279 61.111 2.82 0.00 36.38 2.27
469 470 2.354539 CAACGCACGGGCCTTTTG 60.355 61.111 2.82 0.74 36.38 2.44
470 471 4.279043 AACGCACGGGCCTTTTGC 62.279 61.111 2.82 8.25 36.38 3.68
472 473 3.053291 CGCACGGGCCTTTTGCTA 61.053 61.111 2.82 0.00 40.92 3.49
473 474 2.406616 CGCACGGGCCTTTTGCTAT 61.407 57.895 2.82 0.00 40.92 2.97
474 475 1.890174 GCACGGGCCTTTTGCTATT 59.110 52.632 0.00 0.00 40.92 1.73
475 476 1.099689 GCACGGGCCTTTTGCTATTA 58.900 50.000 0.00 0.00 40.92 0.98
476 477 1.474879 GCACGGGCCTTTTGCTATTAA 59.525 47.619 0.00 0.00 40.92 1.40
477 478 2.734175 GCACGGGCCTTTTGCTATTAAC 60.734 50.000 0.00 0.00 40.92 2.01
478 479 2.097036 ACGGGCCTTTTGCTATTAACC 58.903 47.619 0.84 0.00 40.92 2.85
479 480 2.096248 CGGGCCTTTTGCTATTAACCA 58.904 47.619 0.84 0.00 40.92 3.67
480 481 2.159296 CGGGCCTTTTGCTATTAACCAC 60.159 50.000 0.84 0.00 40.92 4.16
481 482 2.167693 GGGCCTTTTGCTATTAACCACC 59.832 50.000 0.84 0.00 40.92 4.61
482 483 3.096852 GGCCTTTTGCTATTAACCACCT 58.903 45.455 0.00 0.00 40.92 4.00
483 484 4.274978 GGCCTTTTGCTATTAACCACCTA 58.725 43.478 0.00 0.00 40.92 3.08
484 485 4.097437 GGCCTTTTGCTATTAACCACCTAC 59.903 45.833 0.00 0.00 40.92 3.18
485 486 4.097437 GCCTTTTGCTATTAACCACCTACC 59.903 45.833 0.00 0.00 36.87 3.18
486 487 5.506708 CCTTTTGCTATTAACCACCTACCT 58.493 41.667 0.00 0.00 0.00 3.08
487 488 6.655930 CCTTTTGCTATTAACCACCTACCTA 58.344 40.000 0.00 0.00 0.00 3.08
488 489 6.541278 CCTTTTGCTATTAACCACCTACCTAC 59.459 42.308 0.00 0.00 0.00 3.18
489 490 5.619132 TTGCTATTAACCACCTACCTACC 57.381 43.478 0.00 0.00 0.00 3.18
490 491 3.638160 TGCTATTAACCACCTACCTACCG 59.362 47.826 0.00 0.00 0.00 4.02
491 492 3.006217 GCTATTAACCACCTACCTACCGG 59.994 52.174 0.00 0.00 0.00 5.28
492 493 2.917713 TTAACCACCTACCTACCGGA 57.082 50.000 9.46 0.00 0.00 5.14
493 494 2.917713 TAACCACCTACCTACCGGAA 57.082 50.000 9.46 0.00 0.00 4.30
503 504 5.250082 ACCTACCTACCGGAAAGATTTTTCT 59.750 40.000 9.46 0.00 41.92 2.52
519 520 3.703001 TTTCTGGGAACTGATGGAGAC 57.297 47.619 0.00 0.00 38.17 3.36
570 571 4.760530 TCTCCGATCTTTGACCATCAAT 57.239 40.909 0.00 0.00 36.11 2.57
584 585 2.529151 CATCAATAAACAGTTGGCCGC 58.471 47.619 0.00 0.00 0.00 6.53
617 618 1.656095 GTCGAGCTGAAATCTCCAACG 59.344 52.381 0.00 0.00 0.00 4.10
657 658 2.102925 TGCATGCAGGAACGATAGATGA 59.897 45.455 18.46 0.00 41.38 2.92
770 776 4.378459 CGCAGGTAATCTGTTGTTCCTTTC 60.378 45.833 0.00 0.00 45.08 2.62
777 783 2.955660 TCTGTTGTTCCTTTCCGCAATT 59.044 40.909 0.00 0.00 0.00 2.32
868 875 8.844244 CCCTTTGATAAGAAGATCGATTGATTT 58.156 33.333 0.00 0.00 31.87 2.17
877 884 5.365021 AGATCGATTGATTTTCTGGACCT 57.635 39.130 0.00 0.00 34.09 3.85
882 916 2.559698 TGATTTTCTGGACCTGCGAA 57.440 45.000 0.00 0.00 0.00 4.70
979 1013 1.538419 GGCGGTAAATCTCTTCTCCGG 60.538 57.143 0.00 0.00 38.63 5.14
1003 1037 0.955428 GCGTGCTGTTCCTTGGATGA 60.955 55.000 0.00 0.00 0.00 2.92
1068 1102 0.109272 GAGTGATCCGCTTCGTGACA 60.109 55.000 0.00 0.00 0.00 3.58
1186 1220 2.889988 TCGCCGGCGATGATGTTG 60.890 61.111 45.37 16.92 44.01 3.33
1187 1221 2.889988 CGCCGGCGATGATGTTGA 60.890 61.111 44.86 0.00 42.83 3.18
1188 1222 2.709475 GCCGGCGATGATGTTGAC 59.291 61.111 12.58 0.00 0.00 3.18
1189 1223 2.106074 GCCGGCGATGATGTTGACA 61.106 57.895 12.58 0.00 0.00 3.58
1190 1224 2.009108 CCGGCGATGATGTTGACAG 58.991 57.895 9.30 0.00 0.00 3.51
1191 1225 0.460109 CCGGCGATGATGTTGACAGA 60.460 55.000 9.30 0.00 0.00 3.41
1207 1247 6.264518 TGTTGACAGAGACAGACACAATACTA 59.735 38.462 0.00 0.00 0.00 1.82
1223 1263 2.758327 TAGCGGCGACCATCCTGT 60.758 61.111 12.98 0.00 0.00 4.00
1265 1305 4.478206 CATCCAGTAGTGACTTGATGGT 57.522 45.455 10.01 0.00 45.63 3.55
1266 1306 4.437239 CATCCAGTAGTGACTTGATGGTC 58.563 47.826 10.01 0.00 45.63 4.02
1339 1385 1.992277 GCAGGAGGAGAAGGGAGCA 60.992 63.158 0.00 0.00 0.00 4.26
1482 1537 4.323477 GCCGTGCCACACTACCCA 62.323 66.667 0.00 0.00 31.34 4.51
1488 1543 3.000819 CCACACTACCCAGGCGGA 61.001 66.667 0.00 0.00 34.64 5.54
1620 1678 3.432186 GTGACAAACGCCAGCCTT 58.568 55.556 0.00 0.00 0.00 4.35
1711 1769 0.909610 TAGGGTGAGCAGGAACAGGG 60.910 60.000 0.00 0.00 0.00 4.45
2055 2113 1.841302 CTCTGTGCCCTGCCAAGGTA 61.841 60.000 0.00 0.00 42.74 3.08
2100 2163 0.109723 TTCAGGGTGGAAAGGTTCGG 59.890 55.000 0.00 0.00 0.00 4.30
2215 2278 0.674895 GGCATCGTCCAAGTTCTGCT 60.675 55.000 0.00 0.00 0.00 4.24
2364 2427 2.354305 GTGTTCGTCCGTGCGTCT 60.354 61.111 0.00 0.00 0.00 4.18
2459 2522 2.125350 GCTGAAGGAGGTGGCTCG 60.125 66.667 0.00 0.00 0.00 5.03
2609 2681 5.682234 TCAGATTCATGAAAGGTCTAGCA 57.318 39.130 13.09 0.00 0.00 3.49
2614 2686 8.896744 CAGATTCATGAAAGGTCTAGCAATTTA 58.103 33.333 13.09 0.00 0.00 1.40
2746 2818 5.828328 GCTTACTAAGGCCTTCATTTGGTAT 59.172 40.000 24.49 0.00 0.00 2.73
2750 2822 9.930158 TTACTAAGGCCTTCATTTGGTATTAAT 57.070 29.630 24.49 0.00 0.00 1.40
2816 2889 6.424812 TCGGTAATGATGATTGATGCTGTAAG 59.575 38.462 0.00 0.00 0.00 2.34
2831 4625 8.745590 TGATGCTGTAAGTAAGACTAACATGTA 58.254 33.333 0.00 0.00 35.30 2.29
2860 4654 2.896243 GCACATATATGCTGCTGAGC 57.104 50.000 22.42 0.00 46.44 4.26
2863 4657 3.400255 CACATATATGCTGCTGAGCTGT 58.600 45.455 12.79 0.00 46.39 4.40
2864 4658 3.432592 CACATATATGCTGCTGAGCTGTC 59.567 47.826 12.79 6.08 46.39 3.51
2865 4659 2.827800 TATATGCTGCTGAGCTGTCC 57.172 50.000 12.89 0.00 46.39 4.02
3000 4794 6.994496 AGATTTCGATGCAGATTAAAGATGGA 59.006 34.615 0.00 0.00 0.00 3.41
3066 4860 5.699915 CGATCTCTAGTTTGATGCATTGGAT 59.300 40.000 0.00 0.00 0.00 3.41
3114 4908 6.038997 ACTGACTGTACAAGAATACCCTTC 57.961 41.667 0.00 0.00 0.00 3.46
3244 5054 1.005097 TGGAGAGGGTGCTTCGTACTA 59.995 52.381 0.00 0.00 0.00 1.82
3329 5139 9.737427 ATGTTTACGATTCACTTCTGATACTAG 57.263 33.333 0.00 0.00 0.00 2.57
3366 5176 0.682855 TTGCCCAAATCCTTAGGCCG 60.683 55.000 0.00 0.00 45.14 6.13
3400 5210 2.678336 CCTATGGCGAAGACTTGGTTTC 59.322 50.000 0.00 0.00 34.59 2.78
3402 5212 2.270352 TGGCGAAGACTTGGTTTCAT 57.730 45.000 0.00 0.00 34.59 2.57
3414 5224 4.529377 ACTTGGTTTCATCATTGCATCCTT 59.471 37.500 0.00 0.00 0.00 3.36
3575 5396 8.718102 AGGGCGTAACTGCATAAATTATATAG 57.282 34.615 0.00 0.00 36.28 1.31
3576 5397 7.280205 AGGGCGTAACTGCATAAATTATATAGC 59.720 37.037 0.00 0.00 36.28 2.97
3596 5417 7.856145 ATAGCCATCAAAGAGTAAGAAAGTG 57.144 36.000 0.00 0.00 0.00 3.16
3597 5418 4.457257 AGCCATCAAAGAGTAAGAAAGTGC 59.543 41.667 0.00 0.00 0.00 4.40
3598 5419 4.457257 GCCATCAAAGAGTAAGAAAGTGCT 59.543 41.667 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.895131 AGGGGCATTTTGATGACACAC 59.105 47.619 0.00 0.00 34.74 3.82
1 2 2.307496 AGGGGCATTTTGATGACACA 57.693 45.000 0.00 0.00 34.74 3.72
2 3 3.068590 CCATAGGGGCATTTTGATGACAC 59.931 47.826 0.00 0.00 31.61 3.67
3 4 3.298619 CCATAGGGGCATTTTGATGACA 58.701 45.455 0.00 0.00 0.00 3.58
4 5 3.299503 ACCATAGGGGCATTTTGATGAC 58.700 45.455 0.00 0.00 42.05 3.06
5 6 3.686227 ACCATAGGGGCATTTTGATGA 57.314 42.857 0.00 0.00 42.05 2.92
6 7 3.705579 TCAACCATAGGGGCATTTTGATG 59.294 43.478 0.00 0.00 42.05 3.07
8 9 3.464720 TCAACCATAGGGGCATTTTGA 57.535 42.857 0.00 0.00 42.05 2.69
9 10 3.515104 ACTTCAACCATAGGGGCATTTTG 59.485 43.478 0.00 0.00 42.05 2.44
10 11 3.790126 ACTTCAACCATAGGGGCATTTT 58.210 40.909 0.00 0.00 42.05 1.82
11 12 3.473113 ACTTCAACCATAGGGGCATTT 57.527 42.857 0.00 0.00 42.05 2.32
14 15 4.601406 ATTTACTTCAACCATAGGGGCA 57.399 40.909 0.00 0.00 42.05 5.36
15 16 5.301045 GGTAATTTACTTCAACCATAGGGGC 59.699 44.000 0.00 0.00 42.05 5.80
16 17 5.831525 GGGTAATTTACTTCAACCATAGGGG 59.168 44.000 0.00 0.00 44.81 4.79
17 18 6.320418 GTGGGTAATTTACTTCAACCATAGGG 59.680 42.308 6.52 0.00 41.29 3.53
18 19 6.320418 GGTGGGTAATTTACTTCAACCATAGG 59.680 42.308 6.52 0.00 31.58 2.57
19 20 6.320418 GGGTGGGTAATTTACTTCAACCATAG 59.680 42.308 21.48 0.00 38.53 2.23
20 21 6.189133 GGGTGGGTAATTTACTTCAACCATA 58.811 40.000 21.48 0.00 38.53 2.74
21 22 5.020795 GGGTGGGTAATTTACTTCAACCAT 58.979 41.667 21.48 0.00 38.53 3.55
22 23 4.409187 GGGTGGGTAATTTACTTCAACCA 58.591 43.478 21.48 12.20 38.53 3.67
23 24 3.765511 GGGGTGGGTAATTTACTTCAACC 59.234 47.826 19.74 19.74 38.21 3.77
24 25 3.441222 CGGGGTGGGTAATTTACTTCAAC 59.559 47.826 6.52 7.86 0.00 3.18
25 26 3.074242 ACGGGGTGGGTAATTTACTTCAA 59.926 43.478 6.52 0.00 0.00 2.69
26 27 2.643801 ACGGGGTGGGTAATTTACTTCA 59.356 45.455 6.52 3.48 0.00 3.02
27 28 3.273434 GACGGGGTGGGTAATTTACTTC 58.727 50.000 6.52 1.17 0.00 3.01
28 29 2.643801 TGACGGGGTGGGTAATTTACTT 59.356 45.455 6.52 0.00 0.00 2.24
29 30 2.026915 GTGACGGGGTGGGTAATTTACT 60.027 50.000 6.52 0.00 0.00 2.24
30 31 2.358957 GTGACGGGGTGGGTAATTTAC 58.641 52.381 0.00 0.00 0.00 2.01
31 32 1.281577 GGTGACGGGGTGGGTAATTTA 59.718 52.381 0.00 0.00 0.00 1.40
32 33 0.038599 GGTGACGGGGTGGGTAATTT 59.961 55.000 0.00 0.00 0.00 1.82
33 34 1.687014 GGTGACGGGGTGGGTAATT 59.313 57.895 0.00 0.00 0.00 1.40
34 35 2.303282 GGGTGACGGGGTGGGTAAT 61.303 63.158 0.00 0.00 0.00 1.89
35 36 2.929477 GGGTGACGGGGTGGGTAA 60.929 66.667 0.00 0.00 0.00 2.85
38 39 4.726254 TAGGGGTGACGGGGTGGG 62.726 72.222 0.00 0.00 0.00 4.61
39 40 2.608368 TTAGGGGTGACGGGGTGG 60.608 66.667 0.00 0.00 0.00 4.61
40 41 0.615544 TACTTAGGGGTGACGGGGTG 60.616 60.000 0.00 0.00 0.00 4.61
41 42 0.116940 TTACTTAGGGGTGACGGGGT 59.883 55.000 0.00 0.00 0.00 4.95
42 43 1.278537 TTTACTTAGGGGTGACGGGG 58.721 55.000 0.00 0.00 0.00 5.73
43 44 3.421919 TTTTTACTTAGGGGTGACGGG 57.578 47.619 0.00 0.00 0.00 5.28
62 63 9.936759 TGGAGAAACAATTAACAAAGAGTTTTT 57.063 25.926 0.00 0.00 41.64 1.94
63 64 9.936759 TTGGAGAAACAATTAACAAAGAGTTTT 57.063 25.926 0.00 0.00 41.64 2.43
64 65 9.936759 TTTGGAGAAACAATTAACAAAGAGTTT 57.063 25.926 0.00 0.00 41.64 2.66
72 73 9.372369 ACGAAAAATTTGGAGAAACAATTAACA 57.628 25.926 0.00 0.00 0.00 2.41
73 74 9.843874 GACGAAAAATTTGGAGAAACAATTAAC 57.156 29.630 0.00 0.00 0.00 2.01
74 75 9.810545 AGACGAAAAATTTGGAGAAACAATTAA 57.189 25.926 0.00 0.00 0.00 1.40
75 76 9.810545 AAGACGAAAAATTTGGAGAAACAATTA 57.189 25.926 0.00 0.00 0.00 1.40
76 77 8.716646 AAGACGAAAAATTTGGAGAAACAATT 57.283 26.923 0.00 0.00 0.00 2.32
77 78 8.716646 AAAGACGAAAAATTTGGAGAAACAAT 57.283 26.923 0.00 0.00 0.00 2.71
78 79 7.815068 TGAAAGACGAAAAATTTGGAGAAACAA 59.185 29.630 0.00 0.00 0.00 2.83
79 80 7.316640 TGAAAGACGAAAAATTTGGAGAAACA 58.683 30.769 0.00 0.00 0.00 2.83
80 81 7.749539 TGAAAGACGAAAAATTTGGAGAAAC 57.250 32.000 0.00 0.00 0.00 2.78
81 82 8.816144 CAATGAAAGACGAAAAATTTGGAGAAA 58.184 29.630 0.00 0.00 0.00 2.52
82 83 7.978975 ACAATGAAAGACGAAAAATTTGGAGAA 59.021 29.630 0.00 0.00 0.00 2.87
83 84 7.488322 ACAATGAAAGACGAAAAATTTGGAGA 58.512 30.769 0.00 0.00 0.00 3.71
84 85 7.698836 ACAATGAAAGACGAAAAATTTGGAG 57.301 32.000 0.00 0.00 0.00 3.86
85 86 9.026074 GTTACAATGAAAGACGAAAAATTTGGA 57.974 29.630 0.00 0.00 0.00 3.53
86 87 9.030301 AGTTACAATGAAAGACGAAAAATTTGG 57.970 29.630 0.00 0.00 0.00 3.28
87 88 9.833894 CAGTTACAATGAAAGACGAAAAATTTG 57.166 29.630 0.00 0.00 0.00 2.32
88 89 9.581099 ACAGTTACAATGAAAGACGAAAAATTT 57.419 25.926 0.00 0.00 0.00 1.82
89 90 9.233232 GACAGTTACAATGAAAGACGAAAAATT 57.767 29.630 0.00 0.00 0.00 1.82
90 91 8.402472 TGACAGTTACAATGAAAGACGAAAAAT 58.598 29.630 0.00 0.00 0.00 1.82
91 92 7.694784 GTGACAGTTACAATGAAAGACGAAAAA 59.305 33.333 0.00 0.00 0.00 1.94
92 93 7.184106 GTGACAGTTACAATGAAAGACGAAAA 58.816 34.615 0.00 0.00 0.00 2.29
93 94 6.508880 CGTGACAGTTACAATGAAAGACGAAA 60.509 38.462 0.00 0.00 0.00 3.46
94 95 5.051307 CGTGACAGTTACAATGAAAGACGAA 60.051 40.000 0.00 0.00 0.00 3.85
95 96 4.443063 CGTGACAGTTACAATGAAAGACGA 59.557 41.667 0.00 0.00 0.00 4.20
96 97 4.443063 TCGTGACAGTTACAATGAAAGACG 59.557 41.667 0.00 0.00 0.00 4.18
97 98 5.900339 TCGTGACAGTTACAATGAAAGAC 57.100 39.130 0.00 0.00 0.00 3.01
98 99 6.912203 TTTCGTGACAGTTACAATGAAAGA 57.088 33.333 0.00 0.00 0.00 2.52
99 100 8.471457 CAATTTTCGTGACAGTTACAATGAAAG 58.529 33.333 0.00 0.00 31.08 2.62
100 101 8.184848 TCAATTTTCGTGACAGTTACAATGAAA 58.815 29.630 0.00 0.00 0.00 2.69
101 102 7.698628 TCAATTTTCGTGACAGTTACAATGAA 58.301 30.769 0.00 0.00 0.00 2.57
102 103 7.252965 TCAATTTTCGTGACAGTTACAATGA 57.747 32.000 0.00 0.00 0.00 2.57
103 104 7.906611 TTCAATTTTCGTGACAGTTACAATG 57.093 32.000 0.00 0.00 0.00 2.82
112 113 9.413048 GGGTAATTTATTTCAATTTTCGTGACA 57.587 29.630 0.00 0.00 0.00 3.58
113 114 9.413048 TGGGTAATTTATTTCAATTTTCGTGAC 57.587 29.630 0.00 0.00 0.00 3.67
114 115 9.413048 GTGGGTAATTTATTTCAATTTTCGTGA 57.587 29.630 0.00 0.00 0.00 4.35
115 116 8.652463 GGTGGGTAATTTATTTCAATTTTCGTG 58.348 33.333 0.00 0.00 0.00 4.35
116 117 7.820386 GGGTGGGTAATTTATTTCAATTTTCGT 59.180 33.333 0.00 0.00 0.00 3.85
117 118 8.038351 AGGGTGGGTAATTTATTTCAATTTTCG 58.962 33.333 0.00 0.00 0.00 3.46
118 119 9.161629 CAGGGTGGGTAATTTATTTCAATTTTC 57.838 33.333 0.00 0.00 0.00 2.29
119 120 8.664992 ACAGGGTGGGTAATTTATTTCAATTTT 58.335 29.630 0.00 0.00 0.00 1.82
120 121 8.213489 ACAGGGTGGGTAATTTATTTCAATTT 57.787 30.769 0.00 0.00 0.00 1.82
121 122 7.456269 TGACAGGGTGGGTAATTTATTTCAATT 59.544 33.333 0.00 0.00 0.00 2.32
122 123 6.957020 TGACAGGGTGGGTAATTTATTTCAAT 59.043 34.615 0.00 0.00 0.00 2.57
123 124 6.209788 GTGACAGGGTGGGTAATTTATTTCAA 59.790 38.462 0.00 0.00 0.00 2.69
124 125 5.712917 GTGACAGGGTGGGTAATTTATTTCA 59.287 40.000 0.00 0.00 0.00 2.69
125 126 5.126545 GGTGACAGGGTGGGTAATTTATTTC 59.873 44.000 0.00 0.00 0.00 2.17
126 127 5.020795 GGTGACAGGGTGGGTAATTTATTT 58.979 41.667 0.00 0.00 0.00 1.40
127 128 4.571148 GGGTGACAGGGTGGGTAATTTATT 60.571 45.833 0.00 0.00 0.00 1.40
128 129 3.053170 GGGTGACAGGGTGGGTAATTTAT 60.053 47.826 0.00 0.00 0.00 1.40
129 130 2.309458 GGGTGACAGGGTGGGTAATTTA 59.691 50.000 0.00 0.00 0.00 1.40
130 131 1.076513 GGGTGACAGGGTGGGTAATTT 59.923 52.381 0.00 0.00 0.00 1.82
131 132 0.702316 GGGTGACAGGGTGGGTAATT 59.298 55.000 0.00 0.00 0.00 1.40
132 133 1.559065 CGGGTGACAGGGTGGGTAAT 61.559 60.000 0.00 0.00 0.00 1.89
133 134 2.218454 CGGGTGACAGGGTGGGTAA 61.218 63.158 0.00 0.00 0.00 2.85
134 135 2.091640 TACGGGTGACAGGGTGGGTA 62.092 60.000 0.00 0.00 0.00 3.69
135 136 2.968902 TTACGGGTGACAGGGTGGGT 62.969 60.000 0.00 0.00 0.00 4.51
136 137 1.770749 TTTACGGGTGACAGGGTGGG 61.771 60.000 0.00 0.00 0.00 4.61
137 138 0.108963 TTTTACGGGTGACAGGGTGG 59.891 55.000 0.00 0.00 0.00 4.61
138 139 1.202722 ACTTTTACGGGTGACAGGGTG 60.203 52.381 0.00 0.00 0.00 4.61
139 140 1.134228 ACTTTTACGGGTGACAGGGT 58.866 50.000 0.00 0.00 0.00 4.34
140 141 1.071071 TCACTTTTACGGGTGACAGGG 59.929 52.381 0.00 0.00 37.52 4.45
141 142 2.536761 TCACTTTTACGGGTGACAGG 57.463 50.000 0.00 0.00 37.52 4.00
142 143 4.886247 TTTTCACTTTTACGGGTGACAG 57.114 40.909 0.00 0.00 41.36 3.51
167 168 4.688021 ACGAATAATTCAGAGGAGCACTC 58.312 43.478 0.00 0.53 46.98 3.51
168 169 4.744795 ACGAATAATTCAGAGGAGCACT 57.255 40.909 0.00 0.00 0.00 4.40
169 170 5.348986 TGTACGAATAATTCAGAGGAGCAC 58.651 41.667 0.00 0.00 0.00 4.40
170 171 5.592104 TGTACGAATAATTCAGAGGAGCA 57.408 39.130 0.00 0.00 0.00 4.26
171 172 6.216569 TGATGTACGAATAATTCAGAGGAGC 58.783 40.000 0.00 0.00 0.00 4.70
172 173 9.566530 CTATGATGTACGAATAATTCAGAGGAG 57.433 37.037 0.00 0.00 0.00 3.69
173 174 8.523658 CCTATGATGTACGAATAATTCAGAGGA 58.476 37.037 5.67 0.00 42.42 3.71
174 175 7.761704 CCCTATGATGTACGAATAATTCAGAGG 59.238 40.741 4.78 4.78 40.54 3.69
175 176 7.276658 GCCCTATGATGTACGAATAATTCAGAG 59.723 40.741 0.00 0.00 0.00 3.35
176 177 7.097192 GCCCTATGATGTACGAATAATTCAGA 58.903 38.462 0.00 0.00 0.00 3.27
177 178 6.313905 GGCCCTATGATGTACGAATAATTCAG 59.686 42.308 0.00 0.00 0.00 3.02
178 179 6.170506 GGCCCTATGATGTACGAATAATTCA 58.829 40.000 0.00 0.00 0.00 2.57
179 180 5.585047 GGGCCCTATGATGTACGAATAATTC 59.415 44.000 17.04 0.00 0.00 2.17
180 181 5.250774 AGGGCCCTATGATGTACGAATAATT 59.749 40.000 27.42 0.00 0.00 1.40
181 182 4.783227 AGGGCCCTATGATGTACGAATAAT 59.217 41.667 27.42 0.00 0.00 1.28
182 183 4.164981 AGGGCCCTATGATGTACGAATAA 58.835 43.478 27.42 0.00 0.00 1.40
183 184 3.786553 AGGGCCCTATGATGTACGAATA 58.213 45.455 27.42 0.00 0.00 1.75
184 185 2.621070 AGGGCCCTATGATGTACGAAT 58.379 47.619 27.42 0.00 0.00 3.34
185 186 2.097110 AGGGCCCTATGATGTACGAA 57.903 50.000 27.42 0.00 0.00 3.85
186 187 1.968493 GAAGGGCCCTATGATGTACGA 59.032 52.381 28.96 0.00 0.00 3.43
187 188 1.691976 TGAAGGGCCCTATGATGTACG 59.308 52.381 28.96 0.00 0.00 3.67
188 189 2.706190 ACTGAAGGGCCCTATGATGTAC 59.294 50.000 28.96 9.68 0.00 2.90
189 190 3.060479 ACTGAAGGGCCCTATGATGTA 57.940 47.619 28.96 5.53 0.00 2.29
190 191 1.898863 ACTGAAGGGCCCTATGATGT 58.101 50.000 28.96 16.80 0.00 3.06
191 192 3.303351 AAACTGAAGGGCCCTATGATG 57.697 47.619 28.96 16.11 0.00 3.07
192 193 3.373110 GGAAAACTGAAGGGCCCTATGAT 60.373 47.826 28.96 9.77 0.00 2.45
193 194 2.025321 GGAAAACTGAAGGGCCCTATGA 60.025 50.000 28.96 11.22 0.00 2.15
194 195 2.291540 TGGAAAACTGAAGGGCCCTATG 60.292 50.000 28.96 20.27 0.00 2.23
195 196 2.000048 TGGAAAACTGAAGGGCCCTAT 59.000 47.619 28.96 16.00 0.00 2.57
196 197 1.451449 TGGAAAACTGAAGGGCCCTA 58.549 50.000 28.96 10.01 0.00 3.53
197 198 0.786435 ATGGAAAACTGAAGGGCCCT 59.214 50.000 22.28 22.28 0.00 5.19
198 199 1.186200 GATGGAAAACTGAAGGGCCC 58.814 55.000 16.46 16.46 0.00 5.80
199 200 1.186200 GGATGGAAAACTGAAGGGCC 58.814 55.000 0.00 0.00 0.00 5.80
200 201 1.923356 TGGATGGAAAACTGAAGGGC 58.077 50.000 0.00 0.00 0.00 5.19
201 202 2.684881 CGATGGATGGAAAACTGAAGGG 59.315 50.000 0.00 0.00 0.00 3.95
202 203 3.127548 CACGATGGATGGAAAACTGAAGG 59.872 47.826 0.00 0.00 0.00 3.46
203 204 4.002982 TCACGATGGATGGAAAACTGAAG 58.997 43.478 0.00 0.00 0.00 3.02
204 205 4.002982 CTCACGATGGATGGAAAACTGAA 58.997 43.478 0.00 0.00 0.00 3.02
205 206 3.260632 TCTCACGATGGATGGAAAACTGA 59.739 43.478 0.00 0.00 0.00 3.41
206 207 3.372206 GTCTCACGATGGATGGAAAACTG 59.628 47.826 0.00 0.00 0.00 3.16
207 208 3.261897 AGTCTCACGATGGATGGAAAACT 59.738 43.478 0.00 0.00 0.00 2.66
208 209 3.372206 CAGTCTCACGATGGATGGAAAAC 59.628 47.826 0.00 0.00 0.00 2.43
209 210 3.260632 TCAGTCTCACGATGGATGGAAAA 59.739 43.478 0.00 0.00 0.00 2.29
210 211 2.831526 TCAGTCTCACGATGGATGGAAA 59.168 45.455 0.00 0.00 0.00 3.13
211 212 2.456577 TCAGTCTCACGATGGATGGAA 58.543 47.619 0.00 0.00 0.00 3.53
212 213 2.143876 TCAGTCTCACGATGGATGGA 57.856 50.000 0.00 0.00 0.00 3.41
213 214 2.627221 AGATCAGTCTCACGATGGATGG 59.373 50.000 0.00 0.00 0.00 3.51
214 215 4.319139 AAGATCAGTCTCACGATGGATG 57.681 45.455 0.00 0.00 32.15 3.51
215 216 5.128499 AGAAAAGATCAGTCTCACGATGGAT 59.872 40.000 0.00 0.00 32.15 3.41
216 217 4.464244 AGAAAAGATCAGTCTCACGATGGA 59.536 41.667 0.00 0.00 32.15 3.41
217 218 4.753233 AGAAAAGATCAGTCTCACGATGG 58.247 43.478 0.00 0.00 32.15 3.51
218 219 6.718454 AAAGAAAAGATCAGTCTCACGATG 57.282 37.500 0.00 0.00 32.15 3.84
219 220 7.659390 AGAAAAAGAAAAGATCAGTCTCACGAT 59.341 33.333 0.00 0.00 32.15 3.73
220 221 6.986817 AGAAAAAGAAAAGATCAGTCTCACGA 59.013 34.615 0.00 0.00 32.15 4.35
221 222 7.183580 AGAAAAAGAAAAGATCAGTCTCACG 57.816 36.000 0.00 0.00 32.15 4.35
222 223 7.796197 CGAAGAAAAAGAAAAGATCAGTCTCAC 59.204 37.037 0.00 0.00 32.15 3.51
223 224 7.519008 GCGAAGAAAAAGAAAAGATCAGTCTCA 60.519 37.037 0.00 0.00 32.15 3.27
224 225 6.794636 GCGAAGAAAAAGAAAAGATCAGTCTC 59.205 38.462 0.00 0.00 32.15 3.36
225 226 6.260936 TGCGAAGAAAAAGAAAAGATCAGTCT 59.739 34.615 0.00 0.00 35.82 3.24
226 227 6.430451 TGCGAAGAAAAAGAAAAGATCAGTC 58.570 36.000 0.00 0.00 0.00 3.51
227 228 6.377327 TGCGAAGAAAAAGAAAAGATCAGT 57.623 33.333 0.00 0.00 0.00 3.41
228 229 8.017373 TGTATGCGAAGAAAAAGAAAAGATCAG 58.983 33.333 0.00 0.00 0.00 2.90
229 230 7.870826 TGTATGCGAAGAAAAAGAAAAGATCA 58.129 30.769 0.00 0.00 0.00 2.92
230 231 8.792538 CATGTATGCGAAGAAAAAGAAAAGATC 58.207 33.333 0.00 0.00 0.00 2.75
231 232 7.274250 GCATGTATGCGAAGAAAAAGAAAAGAT 59.726 33.333 0.53 0.00 44.67 2.40
232 233 6.582295 GCATGTATGCGAAGAAAAAGAAAAGA 59.418 34.615 0.53 0.00 44.67 2.52
233 234 6.745392 GCATGTATGCGAAGAAAAAGAAAAG 58.255 36.000 0.53 0.00 44.67 2.27
234 235 6.689178 GCATGTATGCGAAGAAAAAGAAAA 57.311 33.333 0.53 0.00 44.67 2.29
249 250 6.872628 AAGTACATCCTTGATGCATGTATG 57.127 37.500 2.46 2.96 43.15 2.39
250 251 8.978874 TTTAAGTACATCCTTGATGCATGTAT 57.021 30.769 2.46 0.00 43.15 2.29
251 252 8.800370 TTTTAAGTACATCCTTGATGCATGTA 57.200 30.769 2.46 0.00 43.15 2.29
252 253 7.148018 CCTTTTAAGTACATCCTTGATGCATGT 60.148 37.037 2.46 0.00 43.15 3.21
253 254 7.067372 TCCTTTTAAGTACATCCTTGATGCATG 59.933 37.037 2.46 0.00 43.15 4.06
254 255 7.118723 TCCTTTTAAGTACATCCTTGATGCAT 58.881 34.615 0.00 0.00 43.15 3.96
255 256 6.480763 TCCTTTTAAGTACATCCTTGATGCA 58.519 36.000 4.05 0.00 43.15 3.96
256 257 7.391148 TTCCTTTTAAGTACATCCTTGATGC 57.609 36.000 4.05 0.00 43.15 3.91
259 260 9.444600 GTGTATTCCTTTTAAGTACATCCTTGA 57.555 33.333 0.00 0.00 0.00 3.02
260 261 8.388103 CGTGTATTCCTTTTAAGTACATCCTTG 58.612 37.037 0.00 0.00 0.00 3.61
261 262 7.065443 GCGTGTATTCCTTTTAAGTACATCCTT 59.935 37.037 0.00 0.00 0.00 3.36
262 263 6.537660 GCGTGTATTCCTTTTAAGTACATCCT 59.462 38.462 0.00 0.00 0.00 3.24
263 264 6.314400 TGCGTGTATTCCTTTTAAGTACATCC 59.686 38.462 0.00 0.00 0.00 3.51
264 265 7.298507 TGCGTGTATTCCTTTTAAGTACATC 57.701 36.000 0.00 0.00 0.00 3.06
265 266 7.551262 TGATGCGTGTATTCCTTTTAAGTACAT 59.449 33.333 0.00 0.00 0.00 2.29
266 267 6.874664 TGATGCGTGTATTCCTTTTAAGTACA 59.125 34.615 0.00 0.00 0.00 2.90
267 268 7.298507 TGATGCGTGTATTCCTTTTAAGTAC 57.701 36.000 0.00 0.00 0.00 2.73
268 269 7.065324 CCTTGATGCGTGTATTCCTTTTAAGTA 59.935 37.037 0.00 0.00 0.00 2.24
269 270 6.128007 CCTTGATGCGTGTATTCCTTTTAAGT 60.128 38.462 0.00 0.00 0.00 2.24
270 271 6.093495 TCCTTGATGCGTGTATTCCTTTTAAG 59.907 38.462 0.00 0.00 0.00 1.85
271 272 5.941058 TCCTTGATGCGTGTATTCCTTTTAA 59.059 36.000 0.00 0.00 0.00 1.52
272 273 5.492895 TCCTTGATGCGTGTATTCCTTTTA 58.507 37.500 0.00 0.00 0.00 1.52
273 274 4.331968 TCCTTGATGCGTGTATTCCTTTT 58.668 39.130 0.00 0.00 0.00 2.27
274 275 3.950397 TCCTTGATGCGTGTATTCCTTT 58.050 40.909 0.00 0.00 0.00 3.11
275 276 3.627395 TCCTTGATGCGTGTATTCCTT 57.373 42.857 0.00 0.00 0.00 3.36
276 277 3.845781 ATCCTTGATGCGTGTATTCCT 57.154 42.857 0.00 0.00 0.00 3.36
277 278 5.527582 ACTTTATCCTTGATGCGTGTATTCC 59.472 40.000 0.00 0.00 0.00 3.01
278 279 6.292919 GGACTTTATCCTTGATGCGTGTATTC 60.293 42.308 0.00 0.00 45.22 1.75
279 280 5.527582 GGACTTTATCCTTGATGCGTGTATT 59.472 40.000 0.00 0.00 45.22 1.89
280 281 5.057149 GGACTTTATCCTTGATGCGTGTAT 58.943 41.667 0.00 0.00 45.22 2.29
281 282 4.439057 GGACTTTATCCTTGATGCGTGTA 58.561 43.478 0.00 0.00 45.22 2.90
282 283 3.270877 GGACTTTATCCTTGATGCGTGT 58.729 45.455 0.00 0.00 45.22 4.49
283 284 3.951979 GGACTTTATCCTTGATGCGTG 57.048 47.619 0.00 0.00 45.22 5.34
294 295 4.402056 TGGATCGAGGTTGGACTTTATC 57.598 45.455 0.00 0.00 0.00 1.75
295 296 5.126067 CAATGGATCGAGGTTGGACTTTAT 58.874 41.667 0.00 0.00 0.00 1.40
296 297 4.019681 ACAATGGATCGAGGTTGGACTTTA 60.020 41.667 0.00 0.00 0.00 1.85
297 298 3.244911 ACAATGGATCGAGGTTGGACTTT 60.245 43.478 0.00 0.00 0.00 2.66
298 299 2.305927 ACAATGGATCGAGGTTGGACTT 59.694 45.455 0.00 0.00 0.00 3.01
299 300 1.909302 ACAATGGATCGAGGTTGGACT 59.091 47.619 0.00 0.00 0.00 3.85
300 301 2.009774 CACAATGGATCGAGGTTGGAC 58.990 52.381 0.00 0.00 0.00 4.02
301 302 1.905894 TCACAATGGATCGAGGTTGGA 59.094 47.619 0.00 0.00 0.00 3.53
302 303 2.283298 CTCACAATGGATCGAGGTTGG 58.717 52.381 0.00 0.00 0.00 3.77
303 304 1.667724 GCTCACAATGGATCGAGGTTG 59.332 52.381 0.00 0.00 0.00 3.77
304 305 1.740380 CGCTCACAATGGATCGAGGTT 60.740 52.381 0.00 0.00 0.00 3.50
305 306 0.179100 CGCTCACAATGGATCGAGGT 60.179 55.000 0.00 0.00 0.00 3.85
306 307 0.179100 ACGCTCACAATGGATCGAGG 60.179 55.000 0.00 0.00 31.42 4.63
307 308 2.492019 TACGCTCACAATGGATCGAG 57.508 50.000 0.00 0.00 31.42 4.04
308 309 3.452755 AATACGCTCACAATGGATCGA 57.547 42.857 0.00 0.00 31.42 3.59
309 310 5.651172 TTTAATACGCTCACAATGGATCG 57.349 39.130 0.00 0.00 33.04 3.69
310 311 6.360681 GCATTTTAATACGCTCACAATGGATC 59.639 38.462 0.00 0.00 0.00 3.36
311 312 6.183360 TGCATTTTAATACGCTCACAATGGAT 60.183 34.615 0.00 0.00 0.00 3.41
312 313 5.124617 TGCATTTTAATACGCTCACAATGGA 59.875 36.000 0.00 0.00 0.00 3.41
313 314 5.229887 GTGCATTTTAATACGCTCACAATGG 59.770 40.000 0.00 0.00 0.00 3.16
314 315 5.799435 TGTGCATTTTAATACGCTCACAATG 59.201 36.000 0.00 0.00 31.31 2.82
315 316 5.948588 TGTGCATTTTAATACGCTCACAAT 58.051 33.333 0.00 0.00 31.31 2.71
316 317 5.363979 TGTGCATTTTAATACGCTCACAA 57.636 34.783 0.00 0.00 31.31 3.33
317 318 5.106357 ACATGTGCATTTTAATACGCTCACA 60.106 36.000 0.00 0.00 37.56 3.58
318 319 5.331902 ACATGTGCATTTTAATACGCTCAC 58.668 37.500 0.00 0.00 31.49 3.51
319 320 5.353956 AGACATGTGCATTTTAATACGCTCA 59.646 36.000 1.15 0.00 33.03 4.26
320 321 5.810525 AGACATGTGCATTTTAATACGCTC 58.189 37.500 1.15 0.00 0.00 5.03
321 322 5.818136 AGACATGTGCATTTTAATACGCT 57.182 34.783 1.15 0.00 0.00 5.07
322 323 6.964370 TGTAAGACATGTGCATTTTAATACGC 59.036 34.615 1.15 0.00 0.00 4.42
323 324 9.158364 GATGTAAGACATGTGCATTTTAATACG 57.842 33.333 1.15 0.00 39.27 3.06
324 325 9.450807 GGATGTAAGACATGTGCATTTTAATAC 57.549 33.333 1.15 0.00 39.27 1.89
325 326 8.341903 CGGATGTAAGACATGTGCATTTTAATA 58.658 33.333 1.15 0.00 39.27 0.98
326 327 7.195646 CGGATGTAAGACATGTGCATTTTAAT 58.804 34.615 1.15 0.00 39.27 1.40
327 328 6.550843 CGGATGTAAGACATGTGCATTTTAA 58.449 36.000 1.15 0.00 39.27 1.52
328 329 5.448496 GCGGATGTAAGACATGTGCATTTTA 60.448 40.000 1.15 0.00 39.27 1.52
329 330 4.675146 GCGGATGTAAGACATGTGCATTTT 60.675 41.667 1.15 0.00 39.27 1.82
330 331 3.181497 GCGGATGTAAGACATGTGCATTT 60.181 43.478 1.15 0.00 39.27 2.32
331 332 2.355756 GCGGATGTAAGACATGTGCATT 59.644 45.455 1.15 0.00 39.27 3.56
332 333 1.942657 GCGGATGTAAGACATGTGCAT 59.057 47.619 1.15 2.15 39.27 3.96
333 334 1.338579 TGCGGATGTAAGACATGTGCA 60.339 47.619 1.15 0.00 39.27 4.57
334 335 1.368641 TGCGGATGTAAGACATGTGC 58.631 50.000 1.15 0.00 39.27 4.57
335 336 2.938451 ACATGCGGATGTAAGACATGTG 59.062 45.455 21.92 0.00 46.99 3.21
336 337 3.266510 ACATGCGGATGTAAGACATGT 57.733 42.857 21.92 7.21 44.77 3.21
337 338 2.288729 CCACATGCGGATGTAAGACATG 59.711 50.000 22.75 8.26 41.12 3.21
338 339 2.092968 ACCACATGCGGATGTAAGACAT 60.093 45.455 22.75 1.97 41.12 3.06
339 340 1.277842 ACCACATGCGGATGTAAGACA 59.722 47.619 22.75 0.00 41.12 3.41
340 341 1.665679 CACCACATGCGGATGTAAGAC 59.334 52.381 22.75 0.00 41.12 3.01
341 342 2.011548 GCACCACATGCGGATGTAAGA 61.012 52.381 22.75 0.00 46.55 2.10
342 343 0.378257 GCACCACATGCGGATGTAAG 59.622 55.000 22.75 18.27 46.55 2.34
343 344 2.476772 GCACCACATGCGGATGTAA 58.523 52.632 22.75 0.00 46.55 2.41
344 345 4.217035 GCACCACATGCGGATGTA 57.783 55.556 22.75 0.00 46.55 2.29
352 353 8.109391 CGTATTTGAATTTTTATGCACCACATG 58.891 33.333 0.00 0.00 40.06 3.21
353 354 7.816995 ACGTATTTGAATTTTTATGCACCACAT 59.183 29.630 0.00 0.00 43.18 3.21
354 355 7.115520 CACGTATTTGAATTTTTATGCACCACA 59.884 33.333 0.00 0.00 0.00 4.17
355 356 7.115663 ACACGTATTTGAATTTTTATGCACCAC 59.884 33.333 0.00 0.00 0.00 4.16
356 357 7.148641 ACACGTATTTGAATTTTTATGCACCA 58.851 30.769 0.00 0.00 0.00 4.17
357 358 7.575332 ACACGTATTTGAATTTTTATGCACC 57.425 32.000 0.00 0.00 0.00 5.01
387 388 8.974408 CAAATATTCACACTCCATGCATAATTG 58.026 33.333 0.00 0.00 0.00 2.32
388 389 8.916062 TCAAATATTCACACTCCATGCATAATT 58.084 29.630 0.00 0.00 0.00 1.40
389 390 8.467963 TCAAATATTCACACTCCATGCATAAT 57.532 30.769 0.00 0.00 0.00 1.28
390 391 7.878547 TCAAATATTCACACTCCATGCATAA 57.121 32.000 0.00 0.00 0.00 1.90
391 392 7.878547 TTCAAATATTCACACTCCATGCATA 57.121 32.000 0.00 0.00 0.00 3.14
392 393 6.778834 TTCAAATATTCACACTCCATGCAT 57.221 33.333 0.00 0.00 0.00 3.96
393 394 6.209192 AGTTTCAAATATTCACACTCCATGCA 59.791 34.615 0.00 0.00 0.00 3.96
394 395 6.624423 AGTTTCAAATATTCACACTCCATGC 58.376 36.000 0.00 0.00 0.00 4.06
395 396 8.298854 TCAAGTTTCAAATATTCACACTCCATG 58.701 33.333 0.00 0.00 0.00 3.66
396 397 8.408043 TCAAGTTTCAAATATTCACACTCCAT 57.592 30.769 0.00 0.00 0.00 3.41
397 398 7.815840 TCAAGTTTCAAATATTCACACTCCA 57.184 32.000 0.00 0.00 0.00 3.86
398 399 9.696917 AAATCAAGTTTCAAATATTCACACTCC 57.303 29.630 0.00 0.00 0.00 3.85
426 427 7.547722 GCAAGGGGATAATAAAATCGTTGTTTT 59.452 33.333 0.00 0.00 35.60 2.43
427 428 7.039270 GCAAGGGGATAATAAAATCGTTGTTT 58.961 34.615 0.00 0.00 0.00 2.83
428 429 6.153680 TGCAAGGGGATAATAAAATCGTTGTT 59.846 34.615 0.00 0.00 0.00 2.83
429 430 5.654650 TGCAAGGGGATAATAAAATCGTTGT 59.345 36.000 0.00 0.00 0.00 3.32
430 431 6.142818 TGCAAGGGGATAATAAAATCGTTG 57.857 37.500 0.00 0.00 0.00 4.10
431 432 6.569780 GTTGCAAGGGGATAATAAAATCGTT 58.430 36.000 0.00 0.00 0.00 3.85
432 433 5.220970 CGTTGCAAGGGGATAATAAAATCGT 60.221 40.000 11.31 0.00 0.00 3.73
433 434 5.212194 CGTTGCAAGGGGATAATAAAATCG 58.788 41.667 11.31 0.00 0.00 3.34
434 435 4.982295 GCGTTGCAAGGGGATAATAAAATC 59.018 41.667 19.88 0.00 0.00 2.17
435 436 4.404073 TGCGTTGCAAGGGGATAATAAAAT 59.596 37.500 19.88 0.00 34.76 1.82
436 437 3.764434 TGCGTTGCAAGGGGATAATAAAA 59.236 39.130 19.88 0.00 34.76 1.52
437 438 3.129638 GTGCGTTGCAAGGGGATAATAAA 59.870 43.478 19.88 0.00 41.47 1.40
438 439 2.685897 GTGCGTTGCAAGGGGATAATAA 59.314 45.455 19.88 0.00 41.47 1.40
439 440 2.294074 GTGCGTTGCAAGGGGATAATA 58.706 47.619 19.88 0.00 41.47 0.98
440 441 1.102978 GTGCGTTGCAAGGGGATAAT 58.897 50.000 19.88 0.00 41.47 1.28
441 442 1.302383 CGTGCGTTGCAAGGGGATAA 61.302 55.000 19.88 0.00 41.47 1.75
442 443 1.743623 CGTGCGTTGCAAGGGGATA 60.744 57.895 19.88 0.00 41.47 2.59
443 444 3.055719 CGTGCGTTGCAAGGGGAT 61.056 61.111 19.88 0.00 41.47 3.85
451 452 4.279043 AAAAGGCCCGTGCGTTGC 62.279 61.111 0.00 0.00 44.30 4.17
452 453 2.354539 CAAAAGGCCCGTGCGTTG 60.355 61.111 0.00 0.00 44.30 4.10
453 454 4.279043 GCAAAAGGCCCGTGCGTT 62.279 61.111 0.00 0.00 46.85 4.84
454 455 3.835790 TAGCAAAAGGCCCGTGCGT 62.836 57.895 15.11 8.12 46.50 5.24
455 456 1.933115 AATAGCAAAAGGCCCGTGCG 61.933 55.000 15.11 0.00 46.50 5.34
456 457 1.099689 TAATAGCAAAAGGCCCGTGC 58.900 50.000 13.64 13.64 46.50 5.34
457 458 2.159296 GGTTAATAGCAAAAGGCCCGTG 60.159 50.000 0.00 0.00 46.50 4.94
458 459 2.097036 GGTTAATAGCAAAAGGCCCGT 58.903 47.619 0.00 0.00 46.50 5.28
459 460 2.096248 TGGTTAATAGCAAAAGGCCCG 58.904 47.619 0.00 0.00 46.50 6.13
460 461 2.167693 GGTGGTTAATAGCAAAAGGCCC 59.832 50.000 0.00 0.00 46.50 5.80
461 462 3.096852 AGGTGGTTAATAGCAAAAGGCC 58.903 45.455 0.00 0.00 46.50 5.19
462 463 4.097437 GGTAGGTGGTTAATAGCAAAAGGC 59.903 45.833 0.00 0.00 45.30 4.35
463 464 5.506708 AGGTAGGTGGTTAATAGCAAAAGG 58.493 41.667 0.00 0.00 32.77 3.11
464 465 6.541278 GGTAGGTAGGTGGTTAATAGCAAAAG 59.459 42.308 0.00 0.00 32.77 2.27
465 466 6.417258 GGTAGGTAGGTGGTTAATAGCAAAA 58.583 40.000 0.00 0.00 32.77 2.44
466 467 5.395546 CGGTAGGTAGGTGGTTAATAGCAAA 60.396 44.000 0.00 0.00 32.77 3.68
467 468 4.099881 CGGTAGGTAGGTGGTTAATAGCAA 59.900 45.833 0.00 0.00 32.77 3.91
468 469 3.638160 CGGTAGGTAGGTGGTTAATAGCA 59.362 47.826 0.00 0.00 0.00 3.49
469 470 3.006217 CCGGTAGGTAGGTGGTTAATAGC 59.994 52.174 0.00 0.00 0.00 2.97
470 471 4.473444 TCCGGTAGGTAGGTGGTTAATAG 58.527 47.826 0.00 0.00 39.05 1.73
471 472 4.534647 TCCGGTAGGTAGGTGGTTAATA 57.465 45.455 0.00 0.00 39.05 0.98
472 473 3.403228 TCCGGTAGGTAGGTGGTTAAT 57.597 47.619 0.00 0.00 39.05 1.40
473 474 2.917713 TCCGGTAGGTAGGTGGTTAA 57.082 50.000 0.00 0.00 39.05 2.01
474 475 2.917713 TTCCGGTAGGTAGGTGGTTA 57.082 50.000 0.00 0.00 39.05 2.85
475 476 1.904537 CTTTCCGGTAGGTAGGTGGTT 59.095 52.381 0.00 0.00 39.05 3.67
476 477 1.077663 TCTTTCCGGTAGGTAGGTGGT 59.922 52.381 0.00 0.00 39.05 4.16
477 478 1.856629 TCTTTCCGGTAGGTAGGTGG 58.143 55.000 0.00 0.00 39.05 4.61
478 479 4.482952 AAATCTTTCCGGTAGGTAGGTG 57.517 45.455 0.00 0.00 39.05 4.00
479 480 5.250082 AGAAAAATCTTTCCGGTAGGTAGGT 59.750 40.000 0.00 0.00 41.72 3.08
480 481 5.585047 CAGAAAAATCTTTCCGGTAGGTAGG 59.415 44.000 0.00 0.00 41.72 3.18
481 482 5.585047 CCAGAAAAATCTTTCCGGTAGGTAG 59.415 44.000 0.00 0.00 41.72 3.18
482 483 5.493809 CCAGAAAAATCTTTCCGGTAGGTA 58.506 41.667 0.00 0.00 41.72 3.08
483 484 4.332828 CCAGAAAAATCTTTCCGGTAGGT 58.667 43.478 0.00 0.00 41.72 3.08
484 485 3.694566 CCCAGAAAAATCTTTCCGGTAGG 59.305 47.826 0.00 0.00 41.72 3.18
485 486 4.585879 TCCCAGAAAAATCTTTCCGGTAG 58.414 43.478 0.00 0.00 41.72 3.18
486 487 4.644163 TCCCAGAAAAATCTTTCCGGTA 57.356 40.909 0.00 0.00 41.72 4.02
487 488 3.518992 TCCCAGAAAAATCTTTCCGGT 57.481 42.857 0.00 0.00 41.72 5.28
488 489 3.826729 AGTTCCCAGAAAAATCTTTCCGG 59.173 43.478 0.00 0.00 41.72 5.14
489 490 4.518970 TCAGTTCCCAGAAAAATCTTTCCG 59.481 41.667 0.00 0.00 41.72 4.30
490 491 6.393171 CATCAGTTCCCAGAAAAATCTTTCC 58.607 40.000 0.00 0.00 41.72 3.13
491 492 6.209391 TCCATCAGTTCCCAGAAAAATCTTTC 59.791 38.462 0.00 0.00 41.19 2.62
492 493 6.077322 TCCATCAGTTCCCAGAAAAATCTTT 58.923 36.000 0.00 0.00 0.00 2.52
493 494 5.644188 TCCATCAGTTCCCAGAAAAATCTT 58.356 37.500 0.00 0.00 0.00 2.40
503 504 0.904865 AGCGTCTCCATCAGTTCCCA 60.905 55.000 0.00 0.00 0.00 4.37
570 571 2.691011 AGAAAAAGCGGCCAACTGTTTA 59.309 40.909 10.24 0.00 0.00 2.01
584 585 1.130613 CTCGACGCCGCAGAAAAAG 59.869 57.895 0.00 0.00 35.37 2.27
594 595 1.148759 GGAGATTTCAGCTCGACGCC 61.149 60.000 3.66 0.00 40.39 5.68
617 618 4.801891 TGCATGCTGATCTGTTTCTTTTC 58.198 39.130 20.33 0.00 0.00 2.29
657 658 4.097892 GGATCGTTTATTCCAGCCAATTGT 59.902 41.667 4.43 0.00 31.99 2.71
733 734 1.213537 CTGCGTGATTTTGCCCTGG 59.786 57.895 0.00 0.00 0.00 4.45
770 776 1.538276 GCTGATCGTTTGAATTGCGG 58.462 50.000 0.00 0.00 0.00 5.69
777 783 1.602237 GAGGGGGCTGATCGTTTGA 59.398 57.895 0.00 0.00 0.00 2.69
868 875 1.478510 GATCTCTTCGCAGGTCCAGAA 59.521 52.381 0.00 0.00 0.00 3.02
902 936 6.381801 CAACCTCAAGAACCATCATACAAAC 58.618 40.000 0.00 0.00 0.00 2.93
1003 1037 3.181456 GGCTGCATCTTTCTCTCCACTAT 60.181 47.826 0.50 0.00 0.00 2.12
1050 1084 0.532573 ATGTCACGAAGCGGATCACT 59.467 50.000 0.00 0.00 0.00 3.41
1068 1102 1.385206 GAGGGAGAGGGCCAGGAAT 60.385 63.158 6.18 0.00 0.00 3.01
1092 1126 1.220477 GAGAGCCCAGCAGGAGAAC 59.780 63.158 0.00 0.00 38.24 3.01
1184 1218 5.791336 AGTATTGTGTCTGTCTCTGTCAA 57.209 39.130 0.00 0.00 0.00 3.18
1186 1220 5.336744 GCTAGTATTGTGTCTGTCTCTGTC 58.663 45.833 0.00 0.00 0.00 3.51
1187 1221 4.142578 CGCTAGTATTGTGTCTGTCTCTGT 60.143 45.833 0.00 0.00 0.00 3.41
1188 1222 4.346970 CGCTAGTATTGTGTCTGTCTCTG 58.653 47.826 0.00 0.00 0.00 3.35
1189 1223 3.378742 CCGCTAGTATTGTGTCTGTCTCT 59.621 47.826 0.00 0.00 0.00 3.10
1190 1224 3.696898 CCGCTAGTATTGTGTCTGTCTC 58.303 50.000 0.00 0.00 0.00 3.36
1191 1225 2.159226 GCCGCTAGTATTGTGTCTGTCT 60.159 50.000 0.00 0.00 0.00 3.41
1207 1247 4.457496 CACAGGATGGTCGCCGCT 62.457 66.667 0.00 0.00 43.62 5.52
1322 1365 0.540923 CTTGCTCCCTTCTCCTCCTG 59.459 60.000 0.00 0.00 0.00 3.86
1339 1385 2.586079 CGCGTCGCATGATCCCTT 60.586 61.111 18.75 0.00 0.00 3.95
1377 1423 0.801067 GCGGCAGGTCGTACAAGTAG 60.801 60.000 0.00 0.00 0.00 2.57
1482 1537 1.889530 GCTGTAGGTTCAGTCCGCCT 61.890 60.000 0.00 0.00 37.70 5.52
1488 1543 0.319900 CGCTGTGCTGTAGGTTCAGT 60.320 55.000 0.00 0.00 37.70 3.41
1878 1936 1.081376 CTTCAGGTTCGCGACGTCT 60.081 57.895 9.15 3.41 0.00 4.18
1887 1945 2.814280 TGACGTCCTTCTTCAGGTTC 57.186 50.000 14.12 0.00 44.37 3.62
1908 1966 1.695893 CCACGTGCATGTAAGGAGCG 61.696 60.000 12.10 0.00 0.00 5.03
2055 2113 6.272090 ACCACCAAAGAATTCCCAATTGTTAT 59.728 34.615 4.43 0.00 33.75 1.89
2364 2427 2.672908 CCCTGCCTCACAGCATCA 59.327 61.111 0.00 0.00 45.78 3.07
2459 2522 5.161943 AGGGTATTGGTACTCAAAGTGAC 57.838 43.478 0.00 0.00 39.05 3.67
2609 2681 6.207417 TCAAAACTGCAAGCTAGCTCTAAATT 59.793 34.615 19.65 7.65 37.60 1.82
2614 2686 3.131709 TCAAAACTGCAAGCTAGCTCT 57.868 42.857 19.65 5.62 37.60 4.09
2792 2864 6.203530 ACTTACAGCATCAATCATCATTACCG 59.796 38.462 0.00 0.00 0.00 4.02
2793 2865 7.502120 ACTTACAGCATCAATCATCATTACC 57.498 36.000 0.00 0.00 0.00 2.85
2800 2873 9.319143 GTTAGTCTTACTTACAGCATCAATCAT 57.681 33.333 0.00 0.00 28.99 2.45
2854 4648 1.527034 TTTCATGTGGACAGCTCAGC 58.473 50.000 0.00 0.00 0.00 4.26
2855 4649 4.778534 ATTTTTCATGTGGACAGCTCAG 57.221 40.909 0.00 0.00 0.00 3.35
2856 4650 6.623486 CAATATTTTTCATGTGGACAGCTCA 58.377 36.000 0.00 0.00 0.00 4.26
2857 4651 5.517770 GCAATATTTTTCATGTGGACAGCTC 59.482 40.000 0.00 0.00 0.00 4.09
2859 4653 5.170021 TGCAATATTTTTCATGTGGACAGC 58.830 37.500 0.00 0.00 0.00 4.40
2860 4654 5.808540 CCTGCAATATTTTTCATGTGGACAG 59.191 40.000 0.00 0.00 0.00 3.51
2863 4657 6.795144 ATCCTGCAATATTTTTCATGTGGA 57.205 33.333 0.00 0.00 0.00 4.02
2864 4658 7.490840 TGTATCCTGCAATATTTTTCATGTGG 58.509 34.615 0.00 0.00 0.00 4.17
2865 4659 8.192774 ACTGTATCCTGCAATATTTTTCATGTG 58.807 33.333 0.00 0.00 0.00 3.21
2936 4730 3.432890 GGGGTGTTCCAAAGCAAAATTCA 60.433 43.478 0.00 0.00 37.22 2.57
2939 4733 1.419762 GGGGGTGTTCCAAAGCAAAAT 59.580 47.619 0.00 0.00 37.22 1.82
3000 4794 9.768215 TTTGATTGAAGGGGTAATTTCTAATCT 57.232 29.630 0.00 0.00 30.71 2.40
3042 4836 5.052481 TCCAATGCATCAAACTAGAGATCG 58.948 41.667 0.00 0.00 0.00 3.69
3050 4844 5.303589 CCCTATTCATCCAATGCATCAAACT 59.696 40.000 0.00 0.00 0.00 2.66
3091 4885 5.780793 AGAAGGGTATTCTTGTACAGTCAGT 59.219 40.000 0.00 0.00 0.00 3.41
3092 4886 6.287589 AGAAGGGTATTCTTGTACAGTCAG 57.712 41.667 0.00 0.00 0.00 3.51
3141 4935 3.429543 TGAAGCACCATACGACGTTAAAC 59.570 43.478 5.50 0.00 0.00 2.01
3147 4941 0.172578 TCCTGAAGCACCATACGACG 59.827 55.000 0.00 0.00 0.00 5.12
3150 4944 1.066858 ACAGTCCTGAAGCACCATACG 60.067 52.381 0.40 0.00 0.00 3.06
3204 5014 2.926200 CAACATCTCAGTAGTGGAAGCG 59.074 50.000 0.00 0.00 0.00 4.68
3211 5021 3.245803 ACCCTCTCCAACATCTCAGTAGT 60.246 47.826 0.00 0.00 0.00 2.73
3214 5024 1.905215 CACCCTCTCCAACATCTCAGT 59.095 52.381 0.00 0.00 0.00 3.41
3244 5054 6.373774 GGACTTCATTCACATGATGAGAAGTT 59.626 38.462 20.65 12.43 45.75 2.66
3293 5103 7.315142 AGTGAATCGTAAACATGCAAATGAAT 58.685 30.769 0.00 0.00 0.00 2.57
3344 5154 2.896745 CCTAAGGATTTGGGCAATGC 57.103 50.000 0.00 0.00 37.33 3.56
3354 5164 1.488812 TGCACATACGGCCTAAGGATT 59.511 47.619 0.00 0.00 0.00 3.01
3386 5196 4.161333 GCAATGATGAAACCAAGTCTTCG 58.839 43.478 0.00 0.00 0.00 3.79
3500 5310 6.939132 ATCTCATTTTGCTTCTATGTCTGG 57.061 37.500 0.00 0.00 0.00 3.86
3575 5396 4.457257 AGCACTTTCTTACTCTTTGATGGC 59.543 41.667 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.