Multiple sequence alignment - TraesCS5B01G377100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G377100 chr5B 100.000 4914 0 0 1 4914 554762036 554757123 0.000000e+00 9075.0
1 TraesCS5B01G377100 chr5B 91.146 192 12 5 4650 4836 338935444 338935635 6.310000e-64 255.0
2 TraesCS5B01G377100 chr5B 87.363 182 17 5 4650 4827 206108531 206108710 2.320000e-48 204.0
3 TraesCS5B01G377100 chr1A 99.584 4091 17 0 542 4632 212733308 212729218 0.000000e+00 7461.0
4 TraesCS5B01G377100 chr1A 99.463 4096 21 1 543 4637 522298306 522294211 0.000000e+00 7441.0
5 TraesCS5B01G377100 chr2B 98.973 4091 41 1 543 4632 600304664 600300574 0.000000e+00 7321.0
6 TraesCS5B01G377100 chr2B 91.403 663 52 3 1863 2523 529813390 529814049 0.000000e+00 904.0
7 TraesCS5B01G377100 chr2D 97.818 2200 33 6 2433 4632 170400973 170403157 0.000000e+00 3783.0
8 TraesCS5B01G377100 chr2D 96.604 1914 45 7 543 2438 170365876 170367787 0.000000e+00 3157.0
9 TraesCS5B01G377100 chr2D 89.696 592 51 7 1939 2529 448333040 448332458 0.000000e+00 747.0
10 TraesCS5B01G377100 chr2D 81.108 704 75 31 543 1232 535037580 535038239 1.220000e-140 510.0
11 TraesCS5B01G377100 chr6B 83.095 1467 202 28 3196 4632 281614103 281612653 0.000000e+00 1293.0
12 TraesCS5B01G377100 chr6B 72.283 552 137 14 3168 3711 52343301 52343844 1.830000e-34 158.0
13 TraesCS5B01G377100 chr7A 93.333 690 36 6 553 1233 603659499 603658811 0.000000e+00 1011.0
14 TraesCS5B01G377100 chr7A 97.052 441 13 0 4193 4633 589594057 589594497 0.000000e+00 743.0
15 TraesCS5B01G377100 chr7A 92.396 434 28 3 4202 4632 74679761 74679330 9.040000e-172 614.0
16 TraesCS5B01G377100 chr7A 85.468 406 31 13 4231 4632 279938285 279938666 9.910000e-107 398.0
17 TraesCS5B01G377100 chr7A 87.708 301 30 5 543 839 279935709 279936006 1.310000e-90 344.0
18 TraesCS5B01G377100 chr7A 93.981 216 12 1 543 757 589593810 589594025 4.740000e-85 326.0
19 TraesCS5B01G377100 chr7A 85.517 290 21 11 543 818 74680064 74679782 2.900000e-72 283.0
20 TraesCS5B01G377100 chr7A 90.345 145 13 1 3984 4128 279938142 279938285 6.490000e-44 189.0
21 TraesCS5B01G377100 chrUn 88.831 573 34 13 4060 4632 26260679 26261221 0.000000e+00 676.0
22 TraesCS5B01G377100 chrUn 79.403 704 72 40 543 1232 26260041 26260685 3.510000e-116 429.0
23 TraesCS5B01G377100 chrUn 83.193 476 50 19 877 1345 103316002 103315550 4.580000e-110 409.0
24 TraesCS5B01G377100 chrUn 87.764 237 17 4 1439 1674 103315550 103315325 2.920000e-67 267.0
25 TraesCS5B01G377100 chr3D 88.462 572 36 9 4061 4632 331002990 331002449 0.000000e+00 664.0
26 TraesCS5B01G377100 chr3D 87.937 572 39 9 4061 4632 68678619 68678078 0.000000e+00 647.0
27 TraesCS5B01G377100 chr3D 82.861 706 73 27 543 1235 68679281 68678611 1.520000e-164 590.0
28 TraesCS5B01G377100 chr2A 93.003 343 24 0 1863 2205 594137186 594137528 7.340000e-138 501.0
29 TraesCS5B01G377100 chr2A 91.176 170 14 1 2341 2509 594137812 594137981 3.830000e-56 230.0
30 TraesCS5B01G377100 chr2A 71.093 851 222 19 2049 2887 298305860 298306698 2.340000e-43 187.0
31 TraesCS5B01G377100 chr2A 96.429 56 2 0 2197 2252 594137712 594137767 5.240000e-15 93.5
32 TraesCS5B01G377100 chr4D 89.812 373 32 4 3963 4329 469148307 469148679 1.600000e-129 473.0
33 TraesCS5B01G377100 chr4D 82.536 481 46 19 877 1345 469147638 469148092 5.960000e-104 388.0
34 TraesCS5B01G377100 chr4D 85.116 215 28 3 4649 4861 463725797 463725585 2.980000e-52 217.0
35 TraesCS5B01G377100 chr7B 98.496 266 3 1 4650 4914 687905434 687905169 7.450000e-128 468.0
36 TraesCS5B01G377100 chr1D 89.544 373 33 4 3963 4329 419423130 419423502 7.450000e-128 468.0
37 TraesCS5B01G377100 chr1D 82.563 476 53 18 877 1345 419422463 419422915 4.610000e-105 392.0
38 TraesCS5B01G377100 chr5D 81.731 520 50 23 533 1039 486921806 486922293 4.610000e-105 392.0
39 TraesCS5B01G377100 chr5D 83.333 240 29 8 4651 4883 253808580 253808345 1.390000e-50 211.0
40 TraesCS5B01G377100 chr5A 85.445 371 37 9 1 369 573049936 573049581 2.160000e-98 370.0
41 TraesCS5B01G377100 chr5A 92.778 180 11 2 361 540 573049546 573049369 4.880000e-65 259.0
42 TraesCS5B01G377100 chr5A 85.047 214 28 3 4650 4861 367369346 367369135 1.070000e-51 215.0
43 TraesCS5B01G377100 chr7D 84.977 213 29 2 4650 4861 615963558 615963348 3.850000e-51 213.0
44 TraesCS5B01G377100 chr7D 87.261 157 19 1 4650 4805 442045702 442045858 1.410000e-40 178.0
45 TraesCS5B01G377100 chr1B 84.259 216 29 4 4648 4861 310923097 310923309 6.450000e-49 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G377100 chr5B 554757123 554762036 4913 True 9075.000000 9075 100.000000 1 4914 1 chr5B.!!$R1 4913
1 TraesCS5B01G377100 chr1A 212729218 212733308 4090 True 7461.000000 7461 99.584000 542 4632 1 chr1A.!!$R1 4090
2 TraesCS5B01G377100 chr1A 522294211 522298306 4095 True 7441.000000 7441 99.463000 543 4637 1 chr1A.!!$R2 4094
3 TraesCS5B01G377100 chr2B 600300574 600304664 4090 True 7321.000000 7321 98.973000 543 4632 1 chr2B.!!$R1 4089
4 TraesCS5B01G377100 chr2B 529813390 529814049 659 False 904.000000 904 91.403000 1863 2523 1 chr2B.!!$F1 660
5 TraesCS5B01G377100 chr2D 170400973 170403157 2184 False 3783.000000 3783 97.818000 2433 4632 1 chr2D.!!$F2 2199
6 TraesCS5B01G377100 chr2D 170365876 170367787 1911 False 3157.000000 3157 96.604000 543 2438 1 chr2D.!!$F1 1895
7 TraesCS5B01G377100 chr2D 448332458 448333040 582 True 747.000000 747 89.696000 1939 2529 1 chr2D.!!$R1 590
8 TraesCS5B01G377100 chr2D 535037580 535038239 659 False 510.000000 510 81.108000 543 1232 1 chr2D.!!$F3 689
9 TraesCS5B01G377100 chr6B 281612653 281614103 1450 True 1293.000000 1293 83.095000 3196 4632 1 chr6B.!!$R1 1436
10 TraesCS5B01G377100 chr7A 603658811 603659499 688 True 1011.000000 1011 93.333000 553 1233 1 chr7A.!!$R1 680
11 TraesCS5B01G377100 chr7A 589593810 589594497 687 False 534.500000 743 95.516500 543 4633 2 chr7A.!!$F2 4090
12 TraesCS5B01G377100 chr7A 74679330 74680064 734 True 448.500000 614 88.956500 543 4632 2 chr7A.!!$R2 4089
13 TraesCS5B01G377100 chr7A 279935709 279938666 2957 False 310.333333 398 87.840333 543 4632 3 chr7A.!!$F1 4089
14 TraesCS5B01G377100 chrUn 26260041 26261221 1180 False 552.500000 676 84.117000 543 4632 2 chrUn.!!$F1 4089
15 TraesCS5B01G377100 chrUn 103315325 103316002 677 True 338.000000 409 85.478500 877 1674 2 chrUn.!!$R1 797
16 TraesCS5B01G377100 chr3D 331002449 331002990 541 True 664.000000 664 88.462000 4061 4632 1 chr3D.!!$R1 571
17 TraesCS5B01G377100 chr3D 68678078 68679281 1203 True 618.500000 647 85.399000 543 4632 2 chr3D.!!$R2 4089
18 TraesCS5B01G377100 chr2A 594137186 594137981 795 False 274.833333 501 93.536000 1863 2509 3 chr2A.!!$F2 646
19 TraesCS5B01G377100 chr4D 469147638 469148679 1041 False 430.500000 473 86.174000 877 4329 2 chr4D.!!$F1 3452
20 TraesCS5B01G377100 chr1D 419422463 419423502 1039 False 430.000000 468 86.053500 877 4329 2 chr1D.!!$F1 3452
21 TraesCS5B01G377100 chr5A 573049369 573049936 567 True 314.500000 370 89.111500 1 540 2 chr5A.!!$R2 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
345 348 0.105194 TGGTGTTCCTGAGAGGGTGA 60.105 55.000 0.0 0.0 35.59 4.02 F
510 513 0.846015 TGGTGGATGATGGATGGGTC 59.154 55.000 0.0 0.0 0.00 4.46 F
511 514 1.143813 GGTGGATGATGGATGGGTCT 58.856 55.000 0.0 0.0 0.00 3.85 F
512 515 1.496429 GGTGGATGATGGATGGGTCTT 59.504 52.381 0.0 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 3625 5.046304 CCTCTTCAAAACATCTCCCTCTACA 60.046 44.000 0.0 0.0 0.0 2.74 R
3040 5009 0.821301 TCGCTTTCACACCATTGCCA 60.821 50.000 0.0 0.0 0.0 4.92 R
3368 5337 4.520492 TCTTTTGAGCAATCAAGGACTTCC 59.480 41.667 0.0 0.0 0.0 3.46 R
4637 6663 3.257627 CCCCCTGCCTCCAACTATA 57.742 57.895 0.0 0.0 0.0 1.31 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.693104 TGTAAGACGGACTTGTATTTCACAC 59.307 40.000 2.98 0.00 39.38 3.82
47 48 2.285428 ACGTCTTCTTGAAAAACGACGC 60.285 45.455 18.34 0.00 45.57 5.19
48 49 2.636519 GTCTTCTTGAAAAACGACGCC 58.363 47.619 0.00 0.00 0.00 5.68
53 54 2.161808 TCTTGAAAAACGACGCCACAAA 59.838 40.909 0.00 0.00 0.00 2.83
70 71 5.472137 GCCACAAAAGTTCAATGGAGTACTA 59.528 40.000 0.00 0.00 31.69 1.82
71 72 6.151144 GCCACAAAAGTTCAATGGAGTACTAT 59.849 38.462 0.00 0.00 31.69 2.12
72 73 7.530010 CCACAAAAGTTCAATGGAGTACTATG 58.470 38.462 0.00 0.00 31.69 2.23
87 88 7.073343 TGGAGTACTATGTCATCCTACCTAGAA 59.927 40.741 0.00 0.00 0.00 2.10
88 89 7.608761 GGAGTACTATGTCATCCTACCTAGAAG 59.391 44.444 0.00 0.00 0.00 2.85
89 90 8.277720 AGTACTATGTCATCCTACCTAGAAGA 57.722 38.462 0.00 0.00 0.00 2.87
101 102 3.482436 ACCTAGAAGATGAGGACTAGCG 58.518 50.000 0.00 0.00 36.61 4.26
111 112 3.628008 TGAGGACTAGCGGACTATTTCA 58.372 45.455 0.00 0.00 0.00 2.69
112 113 4.021229 TGAGGACTAGCGGACTATTTCAA 58.979 43.478 0.00 0.00 0.00 2.69
115 116 3.982058 GGACTAGCGGACTATTTCAATCG 59.018 47.826 0.00 0.00 0.00 3.34
123 124 8.240883 AGCGGACTATTTCAATCGTATTAATC 57.759 34.615 0.00 0.00 0.00 1.75
124 125 8.088981 AGCGGACTATTTCAATCGTATTAATCT 58.911 33.333 0.00 0.00 0.00 2.40
126 127 8.576281 CGGACTATTTCAATCGTATTAATCTCG 58.424 37.037 0.00 0.00 0.00 4.04
255 257 4.489810 GACCAGACACATCACTAACTCAG 58.510 47.826 0.00 0.00 0.00 3.35
260 262 4.588951 AGACACATCACTAACTCAGGAACA 59.411 41.667 0.00 0.00 0.00 3.18
264 266 1.975680 TCACTAACTCAGGAACACCCC 59.024 52.381 0.00 0.00 34.66 4.95
269 271 1.939980 ACTCAGGAACACCCCTACTC 58.060 55.000 0.00 0.00 34.07 2.59
277 279 4.661709 AGGAACACCCCTACTCACTTTTTA 59.338 41.667 0.00 0.00 34.07 1.52
278 280 5.312443 AGGAACACCCCTACTCACTTTTTAT 59.688 40.000 0.00 0.00 34.07 1.40
306 309 0.321564 CTTGGTCCGTTCATGGCTGA 60.322 55.000 0.00 0.00 0.00 4.26
328 331 7.615582 TGAACTAGCTATTGACAGATTTTGG 57.384 36.000 0.00 0.00 0.00 3.28
329 332 7.168219 TGAACTAGCTATTGACAGATTTTGGT 58.832 34.615 0.00 0.00 0.00 3.67
330 333 6.992063 ACTAGCTATTGACAGATTTTGGTG 57.008 37.500 0.00 0.00 0.00 4.17
331 334 6.476378 ACTAGCTATTGACAGATTTTGGTGT 58.524 36.000 0.00 0.00 0.00 4.16
332 335 6.942576 ACTAGCTATTGACAGATTTTGGTGTT 59.057 34.615 0.00 0.00 0.00 3.32
333 336 6.259550 AGCTATTGACAGATTTTGGTGTTC 57.740 37.500 0.00 0.00 0.00 3.18
334 337 5.183904 AGCTATTGACAGATTTTGGTGTTCC 59.816 40.000 0.00 0.00 0.00 3.62
335 338 5.183904 GCTATTGACAGATTTTGGTGTTCCT 59.816 40.000 0.00 0.00 34.23 3.36
336 339 4.916983 TTGACAGATTTTGGTGTTCCTG 57.083 40.909 0.00 0.00 34.23 3.86
337 340 4.163441 TGACAGATTTTGGTGTTCCTGA 57.837 40.909 0.00 0.00 34.23 3.86
338 341 4.136796 TGACAGATTTTGGTGTTCCTGAG 58.863 43.478 0.00 0.00 34.23 3.35
339 342 4.141505 TGACAGATTTTGGTGTTCCTGAGA 60.142 41.667 0.00 0.00 34.23 3.27
340 343 4.392940 ACAGATTTTGGTGTTCCTGAGAG 58.607 43.478 0.00 0.00 34.23 3.20
341 344 3.755378 CAGATTTTGGTGTTCCTGAGAGG 59.245 47.826 0.00 0.00 36.46 3.69
342 345 2.656947 TTTTGGTGTTCCTGAGAGGG 57.343 50.000 0.00 0.00 35.59 4.30
343 346 1.518367 TTTGGTGTTCCTGAGAGGGT 58.482 50.000 0.00 0.00 35.59 4.34
344 347 0.764890 TTGGTGTTCCTGAGAGGGTG 59.235 55.000 0.00 0.00 35.59 4.61
345 348 0.105194 TGGTGTTCCTGAGAGGGTGA 60.105 55.000 0.00 0.00 35.59 4.02
346 349 1.056660 GGTGTTCCTGAGAGGGTGAA 58.943 55.000 0.00 0.00 35.59 3.18
347 350 1.420138 GGTGTTCCTGAGAGGGTGAAA 59.580 52.381 0.00 0.00 35.59 2.69
348 351 2.040412 GGTGTTCCTGAGAGGGTGAAAT 59.960 50.000 0.00 0.00 35.59 2.17
349 352 3.498661 GGTGTTCCTGAGAGGGTGAAATT 60.499 47.826 0.00 0.00 35.59 1.82
350 353 4.145052 GTGTTCCTGAGAGGGTGAAATTT 58.855 43.478 0.00 0.00 35.59 1.82
351 354 4.584743 GTGTTCCTGAGAGGGTGAAATTTT 59.415 41.667 0.00 0.00 35.59 1.82
352 355 4.584325 TGTTCCTGAGAGGGTGAAATTTTG 59.416 41.667 0.00 0.00 35.59 2.44
353 356 3.766545 TCCTGAGAGGGTGAAATTTTGG 58.233 45.455 0.00 0.00 35.59 3.28
354 357 2.827921 CCTGAGAGGGTGAAATTTTGGG 59.172 50.000 0.00 0.00 0.00 4.12
355 358 2.827921 CTGAGAGGGTGAAATTTTGGGG 59.172 50.000 0.00 0.00 0.00 4.96
356 359 2.448961 TGAGAGGGTGAAATTTTGGGGA 59.551 45.455 0.00 0.00 0.00 4.81
357 360 3.092301 GAGAGGGTGAAATTTTGGGGAG 58.908 50.000 0.00 0.00 0.00 4.30
358 361 2.450886 AGAGGGTGAAATTTTGGGGAGT 59.549 45.455 0.00 0.00 0.00 3.85
359 362 2.826128 GAGGGTGAAATTTTGGGGAGTC 59.174 50.000 0.00 0.00 0.00 3.36
360 363 2.178984 AGGGTGAAATTTTGGGGAGTCA 59.821 45.455 0.00 0.00 0.00 3.41
361 364 2.299013 GGGTGAAATTTTGGGGAGTCAC 59.701 50.000 0.00 0.00 35.69 3.67
362 365 2.299013 GGTGAAATTTTGGGGAGTCACC 59.701 50.000 3.74 3.74 45.85 4.02
363 366 3.230976 GTGAAATTTTGGGGAGTCACCT 58.769 45.455 13.92 0.00 38.98 4.00
364 367 4.403734 GTGAAATTTTGGGGAGTCACCTA 58.596 43.478 13.92 1.10 38.98 3.08
365 368 5.016831 GTGAAATTTTGGGGAGTCACCTAT 58.983 41.667 13.92 0.58 38.98 2.57
366 369 5.480422 GTGAAATTTTGGGGAGTCACCTATT 59.520 40.000 13.92 7.04 38.98 1.73
367 370 6.661805 GTGAAATTTTGGGGAGTCACCTATTA 59.338 38.462 13.92 0.00 38.98 0.98
368 371 7.342026 GTGAAATTTTGGGGAGTCACCTATTAT 59.658 37.037 13.92 0.00 38.98 1.28
369 372 8.561769 TGAAATTTTGGGGAGTCACCTATTATA 58.438 33.333 13.92 0.88 38.98 0.98
370 373 9.588096 GAAATTTTGGGGAGTCACCTATTATAT 57.412 33.333 13.92 0.00 38.98 0.86
371 374 9.588096 AAATTTTGGGGAGTCACCTATTATATC 57.412 33.333 13.92 0.00 38.98 1.63
372 375 7.699709 TTTTGGGGAGTCACCTATTATATCA 57.300 36.000 13.92 0.00 38.98 2.15
373 376 6.935240 TTGGGGAGTCACCTATTATATCAG 57.065 41.667 13.92 0.00 38.98 2.90
374 377 5.342017 TGGGGAGTCACCTATTATATCAGG 58.658 45.833 13.92 0.00 38.98 3.86
375 378 5.162760 TGGGGAGTCACCTATTATATCAGGT 60.163 44.000 13.92 0.86 46.29 4.00
381 384 4.161981 ACCTATTATATCAGGTGGGGCT 57.838 45.455 5.24 0.00 43.64 5.19
382 385 5.299824 ACCTATTATATCAGGTGGGGCTA 57.700 43.478 5.24 0.00 43.64 3.93
383 386 5.671941 ACCTATTATATCAGGTGGGGCTAA 58.328 41.667 5.24 0.00 43.64 3.09
384 387 6.280197 ACCTATTATATCAGGTGGGGCTAAT 58.720 40.000 5.24 0.00 43.64 1.73
385 388 7.435885 ACCTATTATATCAGGTGGGGCTAATA 58.564 38.462 5.24 0.00 43.64 0.98
386 389 7.910010 ACCTATTATATCAGGTGGGGCTAATAA 59.090 37.037 5.24 0.00 43.64 1.40
387 390 8.778059 CCTATTATATCAGGTGGGGCTAATAAA 58.222 37.037 0.00 0.00 0.00 1.40
388 391 9.838339 CTATTATATCAGGTGGGGCTAATAAAG 57.162 37.037 0.00 0.00 0.00 1.85
406 409 9.430838 CTAATAAAGCTTTGAATGAGATGTTCG 57.569 33.333 22.02 0.00 0.00 3.95
407 410 5.695851 AAAGCTTTGAATGAGATGTTCGT 57.304 34.783 11.80 0.00 0.00 3.85
408 411 5.695851 AAGCTTTGAATGAGATGTTCGTT 57.304 34.783 0.00 0.00 37.74 3.85
409 412 5.039480 AGCTTTGAATGAGATGTTCGTTG 57.961 39.130 0.00 0.00 35.17 4.10
410 413 4.516698 AGCTTTGAATGAGATGTTCGTTGT 59.483 37.500 0.00 0.00 35.17 3.32
411 414 4.614284 GCTTTGAATGAGATGTTCGTTGTG 59.386 41.667 0.00 0.00 35.17 3.33
412 415 5.560760 GCTTTGAATGAGATGTTCGTTGTGA 60.561 40.000 0.00 0.00 35.17 3.58
413 416 6.370433 TTTGAATGAGATGTTCGTTGTGAA 57.630 33.333 0.00 0.00 35.17 3.18
414 417 6.370433 TTGAATGAGATGTTCGTTGTGAAA 57.630 33.333 0.00 0.00 38.60 2.69
415 418 6.558771 TGAATGAGATGTTCGTTGTGAAAT 57.441 33.333 0.00 0.00 38.60 2.17
416 419 6.602179 TGAATGAGATGTTCGTTGTGAAATC 58.398 36.000 0.00 0.00 38.60 2.17
417 420 5.551760 ATGAGATGTTCGTTGTGAAATCC 57.448 39.130 0.00 0.00 38.60 3.01
418 421 4.641396 TGAGATGTTCGTTGTGAAATCCT 58.359 39.130 0.00 0.00 38.60 3.24
419 422 4.690748 TGAGATGTTCGTTGTGAAATCCTC 59.309 41.667 0.00 0.00 38.60 3.71
420 423 4.641396 AGATGTTCGTTGTGAAATCCTCA 58.359 39.130 0.00 0.00 38.60 3.86
421 424 5.248640 AGATGTTCGTTGTGAAATCCTCAT 58.751 37.500 0.00 0.00 38.60 2.90
422 425 6.406370 AGATGTTCGTTGTGAAATCCTCATA 58.594 36.000 0.00 0.00 38.60 2.15
423 426 6.878923 AGATGTTCGTTGTGAAATCCTCATAA 59.121 34.615 0.00 0.00 38.60 1.90
424 427 6.236017 TGTTCGTTGTGAAATCCTCATAAC 57.764 37.500 4.76 4.76 46.97 1.89
466 469 8.801715 AGTGTGTCTATTTTTATTTGTGCTTG 57.198 30.769 0.00 0.00 0.00 4.01
467 470 8.413229 AGTGTGTCTATTTTTATTTGTGCTTGT 58.587 29.630 0.00 0.00 0.00 3.16
468 471 9.672086 GTGTGTCTATTTTTATTTGTGCTTGTA 57.328 29.630 0.00 0.00 0.00 2.41
481 484 7.489574 TTTGTGCTTGTATTTCAATTTTCCC 57.510 32.000 0.00 0.00 35.35 3.97
482 485 6.418057 TGTGCTTGTATTTCAATTTTCCCT 57.582 33.333 0.00 0.00 35.35 4.20
483 486 7.531857 TGTGCTTGTATTTCAATTTTCCCTA 57.468 32.000 0.00 0.00 35.35 3.53
484 487 7.601856 TGTGCTTGTATTTCAATTTTCCCTAG 58.398 34.615 0.00 0.00 35.35 3.02
485 488 7.450014 TGTGCTTGTATTTCAATTTTCCCTAGA 59.550 33.333 0.00 0.00 35.35 2.43
486 489 7.970614 GTGCTTGTATTTCAATTTTCCCTAGAG 59.029 37.037 0.00 0.00 35.35 2.43
487 490 7.669722 TGCTTGTATTTCAATTTTCCCTAGAGT 59.330 33.333 0.00 0.00 35.35 3.24
488 491 8.523658 GCTTGTATTTCAATTTTCCCTAGAGTT 58.476 33.333 0.00 0.00 35.35 3.01
494 497 7.669089 TTCAATTTTCCCTAGAGTTTTTGGT 57.331 32.000 0.00 0.00 0.00 3.67
495 498 7.049799 TCAATTTTCCCTAGAGTTTTTGGTG 57.950 36.000 0.00 0.00 0.00 4.17
496 499 6.041523 TCAATTTTCCCTAGAGTTTTTGGTGG 59.958 38.462 0.00 0.00 0.00 4.61
497 500 4.799715 TTTCCCTAGAGTTTTTGGTGGA 57.200 40.909 0.00 0.00 0.00 4.02
498 501 5.333566 TTTCCCTAGAGTTTTTGGTGGAT 57.666 39.130 0.00 0.00 0.00 3.41
499 502 4.301072 TCCCTAGAGTTTTTGGTGGATG 57.699 45.455 0.00 0.00 0.00 3.51
500 503 3.913799 TCCCTAGAGTTTTTGGTGGATGA 59.086 43.478 0.00 0.00 0.00 2.92
501 504 4.540099 TCCCTAGAGTTTTTGGTGGATGAT 59.460 41.667 0.00 0.00 0.00 2.45
502 505 4.641989 CCCTAGAGTTTTTGGTGGATGATG 59.358 45.833 0.00 0.00 0.00 3.07
503 506 4.641989 CCTAGAGTTTTTGGTGGATGATGG 59.358 45.833 0.00 0.00 0.00 3.51
504 507 4.387026 AGAGTTTTTGGTGGATGATGGA 57.613 40.909 0.00 0.00 0.00 3.41
505 508 4.939255 AGAGTTTTTGGTGGATGATGGAT 58.061 39.130 0.00 0.00 0.00 3.41
506 509 4.708421 AGAGTTTTTGGTGGATGATGGATG 59.292 41.667 0.00 0.00 0.00 3.51
507 510 3.770933 AGTTTTTGGTGGATGATGGATGG 59.229 43.478 0.00 0.00 0.00 3.51
508 511 2.457813 TTTGGTGGATGATGGATGGG 57.542 50.000 0.00 0.00 0.00 4.00
509 512 1.307878 TTGGTGGATGATGGATGGGT 58.692 50.000 0.00 0.00 0.00 4.51
510 513 0.846015 TGGTGGATGATGGATGGGTC 59.154 55.000 0.00 0.00 0.00 4.46
511 514 1.143813 GGTGGATGATGGATGGGTCT 58.856 55.000 0.00 0.00 0.00 3.85
512 515 1.496429 GGTGGATGATGGATGGGTCTT 59.504 52.381 0.00 0.00 0.00 3.01
513 516 2.487986 GGTGGATGATGGATGGGTCTTC 60.488 54.545 0.00 0.00 0.00 2.87
514 517 2.173356 GTGGATGATGGATGGGTCTTCA 59.827 50.000 0.00 0.00 0.00 3.02
515 518 2.851821 TGGATGATGGATGGGTCTTCAA 59.148 45.455 0.00 0.00 0.00 2.69
516 519 3.217626 GGATGATGGATGGGTCTTCAAC 58.782 50.000 0.00 0.00 0.00 3.18
517 520 3.117738 GGATGATGGATGGGTCTTCAACT 60.118 47.826 0.00 0.00 0.00 3.16
518 521 4.530875 GATGATGGATGGGTCTTCAACTT 58.469 43.478 0.00 0.00 0.00 2.66
519 522 4.387026 TGATGGATGGGTCTTCAACTTT 57.613 40.909 0.00 0.00 0.00 2.66
520 523 4.739793 TGATGGATGGGTCTTCAACTTTT 58.260 39.130 0.00 0.00 0.00 2.27
521 524 4.523943 TGATGGATGGGTCTTCAACTTTTG 59.476 41.667 0.00 0.00 0.00 2.44
522 525 3.909732 TGGATGGGTCTTCAACTTTTGT 58.090 40.909 0.00 0.00 0.00 2.83
523 526 3.888930 TGGATGGGTCTTCAACTTTTGTC 59.111 43.478 0.00 0.00 0.00 3.18
524 527 3.888930 GGATGGGTCTTCAACTTTTGTCA 59.111 43.478 0.00 0.00 0.00 3.58
525 528 4.340950 GGATGGGTCTTCAACTTTTGTCAA 59.659 41.667 0.00 0.00 0.00 3.18
526 529 5.011023 GGATGGGTCTTCAACTTTTGTCAAT 59.989 40.000 0.00 0.00 0.00 2.57
527 530 5.930837 TGGGTCTTCAACTTTTGTCAATT 57.069 34.783 0.00 0.00 0.00 2.32
528 531 7.255801 GGATGGGTCTTCAACTTTTGTCAATTA 60.256 37.037 0.00 0.00 0.00 1.40
529 532 7.595819 TGGGTCTTCAACTTTTGTCAATTAT 57.404 32.000 0.00 0.00 0.00 1.28
530 533 8.017418 TGGGTCTTCAACTTTTGTCAATTATT 57.983 30.769 0.00 0.00 0.00 1.40
531 534 9.137459 TGGGTCTTCAACTTTTGTCAATTATTA 57.863 29.630 0.00 0.00 0.00 0.98
537 540 9.995003 TTCAACTTTTGTCAATTATTATTGCCT 57.005 25.926 0.00 0.00 40.78 4.75
538 541 9.638239 TCAACTTTTGTCAATTATTATTGCCTC 57.362 29.630 0.00 0.00 40.78 4.70
539 542 9.643693 CAACTTTTGTCAATTATTATTGCCTCT 57.356 29.630 0.00 0.00 40.78 3.69
1851 3625 5.501156 GTCTGGGATAGTTTCACCAAGATT 58.499 41.667 0.00 0.00 36.35 2.40
2244 4211 3.803231 GCATGTTCAATGTGCAGAAACAA 59.197 39.130 3.98 0.00 38.68 2.83
3040 5009 4.517285 AGCCGATGTTATCATCTTGTTGT 58.483 39.130 11.14 0.00 45.76 3.32
4638 6664 2.122813 GCCCAGCCCTAGCCTCTA 60.123 66.667 0.00 0.00 41.25 2.43
4639 6665 1.537643 GCCCAGCCCTAGCCTCTAT 60.538 63.158 0.00 0.00 41.25 1.98
4640 6666 0.252284 GCCCAGCCCTAGCCTCTATA 60.252 60.000 0.00 0.00 41.25 1.31
4641 6667 1.859302 CCCAGCCCTAGCCTCTATAG 58.141 60.000 0.00 0.00 41.25 1.31
4642 6668 1.077993 CCCAGCCCTAGCCTCTATAGT 59.922 57.143 0.00 0.00 41.25 2.12
4643 6669 2.493687 CCCAGCCCTAGCCTCTATAGTT 60.494 54.545 0.00 0.00 41.25 2.24
4644 6670 2.564947 CCAGCCCTAGCCTCTATAGTTG 59.435 54.545 0.00 0.00 41.25 3.16
4645 6671 2.564947 CAGCCCTAGCCTCTATAGTTGG 59.435 54.545 0.00 5.06 41.25 3.77
4646 6672 2.451273 AGCCCTAGCCTCTATAGTTGGA 59.549 50.000 15.35 0.00 41.25 3.53
4647 6673 2.829120 GCCCTAGCCTCTATAGTTGGAG 59.171 54.545 15.35 7.22 0.00 3.86
4653 6679 1.974236 CCTCTATAGTTGGAGGCAGGG 59.026 57.143 0.00 0.00 42.89 4.45
4654 6680 1.974236 CTCTATAGTTGGAGGCAGGGG 59.026 57.143 0.00 0.00 0.00 4.79
4655 6681 1.059913 CTATAGTTGGAGGCAGGGGG 58.940 60.000 0.00 0.00 0.00 5.40
4674 6700 1.019278 GGACGCACGTTGATGGATGT 61.019 55.000 0.00 0.00 0.00 3.06
4676 6702 1.298157 ACGCACGTTGATGGATGTGG 61.298 55.000 0.00 0.00 37.10 4.17
4677 6703 1.802636 GCACGTTGATGGATGTGGG 59.197 57.895 0.00 0.00 37.10 4.61
4678 6704 1.656818 GCACGTTGATGGATGTGGGG 61.657 60.000 0.00 0.00 37.10 4.96
4679 6705 1.031571 CACGTTGATGGATGTGGGGG 61.032 60.000 0.00 0.00 33.82 5.40
4682 6708 1.039233 GTTGATGGATGTGGGGGCAG 61.039 60.000 0.00 0.00 0.00 4.85
4685 6711 3.369410 ATGGATGTGGGGGCAGCTG 62.369 63.158 10.11 10.11 0.00 4.24
4698 6724 3.011517 AGCTGCCCCCACTCGATT 61.012 61.111 0.00 0.00 0.00 3.34
4701 6727 1.250840 GCTGCCCCCACTCGATTTTT 61.251 55.000 0.00 0.00 0.00 1.94
4702 6728 0.527565 CTGCCCCCACTCGATTTTTG 59.472 55.000 0.00 0.00 0.00 2.44
4703 6729 0.178975 TGCCCCCACTCGATTTTTGT 60.179 50.000 0.00 0.00 0.00 2.83
4706 6732 1.199097 CCCCCACTCGATTTTTGTTCG 59.801 52.381 0.00 0.00 37.94 3.95
4707 6733 1.401018 CCCCACTCGATTTTTGTTCGC 60.401 52.381 0.00 0.00 36.56 4.70
4708 6734 1.265635 CCCACTCGATTTTTGTTCGCA 59.734 47.619 0.00 0.00 36.56 5.10
4709 6735 2.307049 CCACTCGATTTTTGTTCGCAC 58.693 47.619 0.00 0.00 36.56 5.34
4710 6736 1.962547 CACTCGATTTTTGTTCGCACG 59.037 47.619 0.00 0.00 36.56 5.34
4711 6737 0.967803 CTCGATTTTTGTTCGCACGC 59.032 50.000 0.00 0.00 36.56 5.34
4712 6738 0.584396 TCGATTTTTGTTCGCACGCT 59.416 45.000 0.00 0.00 36.56 5.07
4713 6739 1.003331 TCGATTTTTGTTCGCACGCTT 60.003 42.857 0.00 0.00 36.56 4.68
4714 6740 1.120551 CGATTTTTGTTCGCACGCTTG 59.879 47.619 0.00 0.00 0.00 4.01
4715 6741 1.451651 GATTTTTGTTCGCACGCTTGG 59.548 47.619 0.00 0.00 0.00 3.61
4716 6742 0.452184 TTTTTGTTCGCACGCTTGGA 59.548 45.000 0.00 0.00 0.00 3.53
4717 6743 0.665835 TTTTGTTCGCACGCTTGGAT 59.334 45.000 0.00 0.00 0.00 3.41
4718 6744 0.237235 TTTGTTCGCACGCTTGGATC 59.763 50.000 0.00 0.00 0.00 3.36
4719 6745 1.896339 TTGTTCGCACGCTTGGATCG 61.896 55.000 0.00 0.00 0.00 3.69
4720 6746 2.092291 GTTCGCACGCTTGGATCGA 61.092 57.895 0.00 0.00 0.00 3.59
4721 6747 1.153647 TTCGCACGCTTGGATCGAT 60.154 52.632 0.00 0.00 0.00 3.59
4722 6748 1.145759 TTCGCACGCTTGGATCGATC 61.146 55.000 17.36 17.36 0.00 3.69
4734 6760 3.019933 GGATCGATCCTGTCAAGCTAC 57.980 52.381 32.91 5.73 43.73 3.58
4735 6761 2.605823 GGATCGATCCTGTCAAGCTACG 60.606 54.545 32.91 0.00 43.73 3.51
4736 6762 0.100682 TCGATCCTGTCAAGCTACGC 59.899 55.000 0.00 0.00 0.00 4.42
4737 6763 1.202973 CGATCCTGTCAAGCTACGCG 61.203 60.000 3.53 3.53 0.00 6.01
4738 6764 0.179134 GATCCTGTCAAGCTACGCGT 60.179 55.000 19.17 19.17 0.00 6.01
4739 6765 0.458543 ATCCTGTCAAGCTACGCGTG 60.459 55.000 24.59 13.17 39.24 5.34
4740 6766 2.730672 CCTGTCAAGCTACGCGTGC 61.731 63.158 24.59 22.40 37.89 5.34
4741 6767 2.730672 CTGTCAAGCTACGCGTGCC 61.731 63.158 24.59 12.62 37.89 5.01
4742 6768 3.488090 GTCAAGCTACGCGTGCCC 61.488 66.667 24.59 9.83 37.89 5.36
4743 6769 4.752879 TCAAGCTACGCGTGCCCC 62.753 66.667 24.59 7.09 37.89 5.80
4748 6774 4.388499 CTACGCGTGCCCCCACTT 62.388 66.667 24.59 0.00 39.86 3.16
4749 6775 4.690719 TACGCGTGCCCCCACTTG 62.691 66.667 24.59 0.00 39.86 3.16
4756 6782 4.720680 GCCCCCACTTGGCCCATT 62.721 66.667 0.00 0.00 43.33 3.16
4757 6783 3.104836 CCCCCACTTGGCCCATTA 58.895 61.111 0.00 0.00 0.00 1.90
4758 6784 1.381191 CCCCCACTTGGCCCATTAC 60.381 63.158 0.00 0.00 0.00 1.89
4759 6785 1.697297 CCCCACTTGGCCCATTACT 59.303 57.895 0.00 0.00 0.00 2.24
4760 6786 0.041090 CCCCACTTGGCCCATTACTT 59.959 55.000 0.00 0.00 0.00 2.24
4761 6787 1.552254 CCCCACTTGGCCCATTACTTT 60.552 52.381 0.00 0.00 0.00 2.66
4762 6788 1.550072 CCCACTTGGCCCATTACTTTG 59.450 52.381 0.00 0.00 0.00 2.77
4763 6789 1.066929 CCACTTGGCCCATTACTTTGC 60.067 52.381 0.00 0.00 0.00 3.68
4764 6790 1.066929 CACTTGGCCCATTACTTTGCC 60.067 52.381 0.00 0.00 44.27 4.52
4765 6791 0.536724 CTTGGCCCATTACTTTGCCC 59.463 55.000 0.00 0.00 43.35 5.36
4766 6792 0.907230 TTGGCCCATTACTTTGCCCC 60.907 55.000 0.00 0.00 43.35 5.80
4767 6793 2.063979 GGCCCATTACTTTGCCCCC 61.064 63.158 0.00 0.00 37.94 5.40
4768 6794 2.423064 GCCCATTACTTTGCCCCCG 61.423 63.158 0.00 0.00 0.00 5.73
4769 6795 2.423064 CCCATTACTTTGCCCCCGC 61.423 63.158 0.00 0.00 0.00 6.13
4770 6796 1.379843 CCATTACTTTGCCCCCGCT 60.380 57.895 0.00 0.00 35.36 5.52
4771 6797 1.384222 CCATTACTTTGCCCCCGCTC 61.384 60.000 0.00 0.00 35.36 5.03
4772 6798 0.679640 CATTACTTTGCCCCCGCTCA 60.680 55.000 0.00 0.00 35.36 4.26
4773 6799 0.394352 ATTACTTTGCCCCCGCTCAG 60.394 55.000 0.00 0.00 35.36 3.35
4774 6800 3.622060 TACTTTGCCCCCGCTCAGC 62.622 63.158 0.00 0.00 35.36 4.26
4780 6806 4.447342 CCCCCGCTCAGCCCAATT 62.447 66.667 0.00 0.00 0.00 2.32
4781 6807 2.362889 CCCCGCTCAGCCCAATTT 60.363 61.111 0.00 0.00 0.00 1.82
4782 6808 2.418083 CCCCGCTCAGCCCAATTTC 61.418 63.158 0.00 0.00 0.00 2.17
4783 6809 1.379044 CCCGCTCAGCCCAATTTCT 60.379 57.895 0.00 0.00 0.00 2.52
4784 6810 0.967380 CCCGCTCAGCCCAATTTCTT 60.967 55.000 0.00 0.00 0.00 2.52
4785 6811 0.171903 CCGCTCAGCCCAATTTCTTG 59.828 55.000 0.00 0.00 0.00 3.02
4786 6812 0.883833 CGCTCAGCCCAATTTCTTGT 59.116 50.000 0.00 0.00 0.00 3.16
4787 6813 1.270550 CGCTCAGCCCAATTTCTTGTT 59.729 47.619 0.00 0.00 0.00 2.83
4788 6814 2.288395 CGCTCAGCCCAATTTCTTGTTT 60.288 45.455 0.00 0.00 0.00 2.83
4789 6815 3.057596 CGCTCAGCCCAATTTCTTGTTTA 60.058 43.478 0.00 0.00 0.00 2.01
4790 6816 4.380867 CGCTCAGCCCAATTTCTTGTTTAT 60.381 41.667 0.00 0.00 0.00 1.40
4791 6817 5.482006 GCTCAGCCCAATTTCTTGTTTATT 58.518 37.500 0.00 0.00 0.00 1.40
4792 6818 5.934043 GCTCAGCCCAATTTCTTGTTTATTT 59.066 36.000 0.00 0.00 0.00 1.40
4793 6819 6.427853 GCTCAGCCCAATTTCTTGTTTATTTT 59.572 34.615 0.00 0.00 0.00 1.82
4794 6820 7.571798 GCTCAGCCCAATTTCTTGTTTATTTTG 60.572 37.037 0.00 0.00 0.00 2.44
4795 6821 7.504403 TCAGCCCAATTTCTTGTTTATTTTGA 58.496 30.769 0.00 0.00 0.00 2.69
4796 6822 7.989741 TCAGCCCAATTTCTTGTTTATTTTGAA 59.010 29.630 0.00 0.00 0.00 2.69
4797 6823 8.619546 CAGCCCAATTTCTTGTTTATTTTGAAA 58.380 29.630 0.00 0.00 0.00 2.69
4798 6824 9.183368 AGCCCAATTTCTTGTTTATTTTGAAAA 57.817 25.926 0.00 0.00 31.71 2.29
4799 6825 9.449550 GCCCAATTTCTTGTTTATTTTGAAAAG 57.550 29.630 0.00 0.00 31.71 2.27
4800 6826 9.449550 CCCAATTTCTTGTTTATTTTGAAAAGC 57.550 29.630 0.00 0.00 31.71 3.51
4801 6827 9.449550 CCAATTTCTTGTTTATTTTGAAAAGCC 57.550 29.630 0.00 0.00 31.71 4.35
4802 6828 9.449550 CAATTTCTTGTTTATTTTGAAAAGCCC 57.550 29.630 0.00 0.00 31.71 5.19
4803 6829 8.744568 ATTTCTTGTTTATTTTGAAAAGCCCA 57.255 26.923 0.00 0.00 31.71 5.36
4804 6830 8.744568 TTTCTTGTTTATTTTGAAAAGCCCAT 57.255 26.923 0.00 0.00 0.00 4.00
4805 6831 9.838339 TTTCTTGTTTATTTTGAAAAGCCCATA 57.162 25.926 0.00 0.00 0.00 2.74
4806 6832 9.838339 TTCTTGTTTATTTTGAAAAGCCCATAA 57.162 25.926 0.00 0.00 0.00 1.90
4807 6833 9.838339 TCTTGTTTATTTTGAAAAGCCCATAAA 57.162 25.926 0.00 0.00 0.00 1.40
4836 6862 8.630054 TTTAAATTTGTAGAAGGCTAGAAGCA 57.370 30.769 0.00 0.00 44.75 3.91
4837 6863 6.749923 AAATTTGTAGAAGGCTAGAAGCAG 57.250 37.500 0.00 0.00 44.75 4.24
4838 6864 2.969628 TGTAGAAGGCTAGAAGCAGC 57.030 50.000 0.00 0.00 44.75 5.25
4844 6870 2.579201 GCTAGAAGCAGCCCACGA 59.421 61.111 0.00 0.00 41.89 4.35
4845 6871 1.811679 GCTAGAAGCAGCCCACGAC 60.812 63.158 0.00 0.00 41.89 4.34
4846 6872 1.153549 CTAGAAGCAGCCCACGACC 60.154 63.158 0.00 0.00 0.00 4.79
4847 6873 1.888436 CTAGAAGCAGCCCACGACCA 61.888 60.000 0.00 0.00 0.00 4.02
4848 6874 1.476845 TAGAAGCAGCCCACGACCAA 61.477 55.000 0.00 0.00 0.00 3.67
4849 6875 2.281761 AAGCAGCCCACGACCAAG 60.282 61.111 0.00 0.00 0.00 3.61
4850 6876 2.731691 GAAGCAGCCCACGACCAAGA 62.732 60.000 0.00 0.00 0.00 3.02
4851 6877 2.281484 GCAGCCCACGACCAAGAA 60.281 61.111 0.00 0.00 0.00 2.52
4852 6878 1.896660 GCAGCCCACGACCAAGAAA 60.897 57.895 0.00 0.00 0.00 2.52
4853 6879 1.949257 CAGCCCACGACCAAGAAAC 59.051 57.895 0.00 0.00 0.00 2.78
4854 6880 0.817634 CAGCCCACGACCAAGAAACA 60.818 55.000 0.00 0.00 0.00 2.83
4855 6881 0.535102 AGCCCACGACCAAGAAACAG 60.535 55.000 0.00 0.00 0.00 3.16
4856 6882 1.949257 CCCACGACCAAGAAACAGC 59.051 57.895 0.00 0.00 0.00 4.40
4857 6883 1.515521 CCCACGACCAAGAAACAGCC 61.516 60.000 0.00 0.00 0.00 4.85
4858 6884 0.535102 CCACGACCAAGAAACAGCCT 60.535 55.000 0.00 0.00 0.00 4.58
4859 6885 1.270625 CCACGACCAAGAAACAGCCTA 60.271 52.381 0.00 0.00 0.00 3.93
4860 6886 1.798813 CACGACCAAGAAACAGCCTAC 59.201 52.381 0.00 0.00 0.00 3.18
4861 6887 1.068474 CGACCAAGAAACAGCCTACG 58.932 55.000 0.00 0.00 0.00 3.51
4862 6888 0.796927 GACCAAGAAACAGCCTACGC 59.203 55.000 0.00 0.00 0.00 4.42
4863 6889 0.949105 ACCAAGAAACAGCCTACGCG 60.949 55.000 3.53 3.53 41.18 6.01
4864 6890 1.132640 CAAGAAACAGCCTACGCGC 59.867 57.895 5.73 0.00 41.18 6.86
4865 6891 2.380410 AAGAAACAGCCTACGCGCG 61.380 57.895 30.96 30.96 41.18 6.86
4866 6892 2.758770 AAGAAACAGCCTACGCGCGA 62.759 55.000 39.36 19.16 41.18 5.87
4867 6893 2.789203 GAAACAGCCTACGCGCGAG 61.789 63.158 39.36 26.91 41.18 5.03
4879 6905 2.579787 CGCGAGCCAGAACCTACG 60.580 66.667 0.00 0.00 0.00 3.51
4880 6906 2.882876 GCGAGCCAGAACCTACGA 59.117 61.111 0.00 0.00 0.00 3.43
4881 6907 1.437986 GCGAGCCAGAACCTACGAT 59.562 57.895 0.00 0.00 0.00 3.73
4882 6908 0.179108 GCGAGCCAGAACCTACGATT 60.179 55.000 0.00 0.00 0.00 3.34
4883 6909 1.560923 CGAGCCAGAACCTACGATTG 58.439 55.000 0.00 0.00 0.00 2.67
4884 6910 1.291132 GAGCCAGAACCTACGATTGC 58.709 55.000 0.00 0.00 0.00 3.56
4885 6911 0.613260 AGCCAGAACCTACGATTGCA 59.387 50.000 0.00 0.00 0.00 4.08
4886 6912 1.210478 AGCCAGAACCTACGATTGCAT 59.790 47.619 0.00 0.00 0.00 3.96
4887 6913 2.017049 GCCAGAACCTACGATTGCATT 58.983 47.619 0.00 0.00 0.00 3.56
4888 6914 3.118408 AGCCAGAACCTACGATTGCATTA 60.118 43.478 0.00 0.00 0.00 1.90
4889 6915 3.815401 GCCAGAACCTACGATTGCATTAT 59.185 43.478 0.00 0.00 0.00 1.28
4890 6916 4.275936 GCCAGAACCTACGATTGCATTATT 59.724 41.667 0.00 0.00 0.00 1.40
4891 6917 5.560953 GCCAGAACCTACGATTGCATTATTC 60.561 44.000 0.00 0.00 0.00 1.75
4892 6918 5.333339 CCAGAACCTACGATTGCATTATTCG 60.333 44.000 0.00 7.15 37.96 3.34
4893 6919 5.462068 CAGAACCTACGATTGCATTATTCGA 59.538 40.000 13.53 0.00 36.10 3.71
4894 6920 6.146184 CAGAACCTACGATTGCATTATTCGAT 59.854 38.462 13.53 0.00 36.10 3.59
4895 6921 6.366332 AGAACCTACGATTGCATTATTCGATC 59.634 38.462 13.53 0.00 36.10 3.69
4897 6923 4.857037 CCTACGATTGCATTATTCGATCGA 59.143 41.667 15.15 15.15 45.78 3.59
4898 6924 5.516696 CCTACGATTGCATTATTCGATCGAT 59.483 40.000 20.18 11.53 45.78 3.59
4899 6925 5.441700 ACGATTGCATTATTCGATCGATC 57.558 39.130 20.18 15.68 45.78 3.69
4900 6926 4.923281 ACGATTGCATTATTCGATCGATCA 59.077 37.500 24.40 5.12 45.78 2.92
4901 6927 5.061435 ACGATTGCATTATTCGATCGATCAG 59.939 40.000 24.40 16.57 45.78 2.90
4902 6928 5.061435 CGATTGCATTATTCGATCGATCAGT 59.939 40.000 24.40 11.95 45.78 3.41
4903 6929 5.580911 TTGCATTATTCGATCGATCAGTG 57.419 39.130 24.40 16.32 0.00 3.66
4904 6930 3.429881 TGCATTATTCGATCGATCAGTGC 59.570 43.478 26.31 26.31 0.00 4.40
4905 6931 3.480985 GCATTATTCGATCGATCAGTGCG 60.481 47.826 24.40 11.34 0.00 5.34
4906 6932 2.331809 TATTCGATCGATCAGTGCGG 57.668 50.000 24.40 7.72 0.00 5.69
4907 6933 0.941463 ATTCGATCGATCAGTGCGGC 60.941 55.000 24.40 0.00 0.00 6.53
4908 6934 2.954020 TTCGATCGATCAGTGCGGCC 62.954 60.000 24.40 0.00 0.00 6.13
4909 6935 2.663188 GATCGATCAGTGCGGCCC 60.663 66.667 20.52 0.00 0.00 5.80
4910 6936 3.445518 GATCGATCAGTGCGGCCCA 62.446 63.158 20.52 0.00 0.00 5.36
4911 6937 2.923426 GATCGATCAGTGCGGCCCAA 62.923 60.000 20.52 0.00 0.00 4.12
4912 6938 2.930385 ATCGATCAGTGCGGCCCAAG 62.930 60.000 0.00 0.00 0.00 3.61
4913 6939 2.045926 GATCAGTGCGGCCCAAGT 60.046 61.111 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 5.164119 CGTGTGAAATACAAGTCCGTCTTAC 60.164 44.000 0.00 0.00 41.89 2.34
18 19 6.902948 CGTTTTTCAAGAAGACGTGTGAAATA 59.097 34.615 0.00 0.00 39.15 1.40
47 48 7.174946 ACATAGTACTCCATTGAACTTTTGTGG 59.825 37.037 0.00 0.00 0.00 4.17
48 49 8.099364 ACATAGTACTCCATTGAACTTTTGTG 57.901 34.615 0.00 0.00 0.00 3.33
53 54 7.126421 AGGATGACATAGTACTCCATTGAACTT 59.874 37.037 0.00 0.00 0.00 2.66
70 71 6.015918 CCTCATCTTCTAGGTAGGATGACAT 58.984 44.000 3.04 0.00 39.37 3.06
71 72 5.134509 TCCTCATCTTCTAGGTAGGATGACA 59.865 44.000 3.04 0.00 39.37 3.58
72 73 5.475564 GTCCTCATCTTCTAGGTAGGATGAC 59.524 48.000 3.04 0.46 39.37 3.06
87 88 3.799432 ATAGTCCGCTAGTCCTCATCT 57.201 47.619 0.00 0.00 0.00 2.90
88 89 4.278669 TGAAATAGTCCGCTAGTCCTCATC 59.721 45.833 0.00 0.00 0.00 2.92
89 90 4.215908 TGAAATAGTCCGCTAGTCCTCAT 58.784 43.478 0.00 0.00 0.00 2.90
101 102 9.622004 TCGAGATTAATACGATTGAAATAGTCC 57.378 33.333 11.45 0.00 0.00 3.85
236 238 4.790765 TCCTGAGTTAGTGATGTGTCTG 57.209 45.455 0.00 0.00 0.00 3.51
237 239 4.588951 TGTTCCTGAGTTAGTGATGTGTCT 59.411 41.667 0.00 0.00 0.00 3.41
238 240 4.686554 GTGTTCCTGAGTTAGTGATGTGTC 59.313 45.833 0.00 0.00 0.00 3.67
255 257 3.503800 AAAAGTGAGTAGGGGTGTTCC 57.496 47.619 0.00 0.00 0.00 3.62
260 262 6.027482 TGGTAGATAAAAAGTGAGTAGGGGT 58.973 40.000 0.00 0.00 0.00 4.95
306 309 6.942576 ACACCAAAATCTGTCAATAGCTAGTT 59.057 34.615 0.00 0.00 0.00 2.24
320 323 3.245052 CCCTCTCAGGAACACCAAAATCT 60.245 47.826 0.00 0.00 37.67 2.40
321 324 3.084786 CCCTCTCAGGAACACCAAAATC 58.915 50.000 0.00 0.00 37.67 2.17
322 325 2.447047 ACCCTCTCAGGAACACCAAAAT 59.553 45.455 0.00 0.00 37.67 1.82
323 326 1.850345 ACCCTCTCAGGAACACCAAAA 59.150 47.619 0.00 0.00 37.67 2.44
324 327 1.142870 CACCCTCTCAGGAACACCAAA 59.857 52.381 0.00 0.00 37.67 3.28
325 328 0.764890 CACCCTCTCAGGAACACCAA 59.235 55.000 0.00 0.00 37.67 3.67
326 329 0.105194 TCACCCTCTCAGGAACACCA 60.105 55.000 0.00 0.00 37.67 4.17
327 330 1.056660 TTCACCCTCTCAGGAACACC 58.943 55.000 0.00 0.00 37.67 4.16
328 331 2.930826 TTTCACCCTCTCAGGAACAC 57.069 50.000 0.00 0.00 37.67 3.32
329 332 4.453480 AAATTTCACCCTCTCAGGAACA 57.547 40.909 0.00 0.00 37.67 3.18
330 333 4.021981 CCAAAATTTCACCCTCTCAGGAAC 60.022 45.833 0.00 0.00 37.67 3.62
331 334 4.151883 CCAAAATTTCACCCTCTCAGGAA 58.848 43.478 0.00 0.00 37.67 3.36
332 335 3.500289 CCCAAAATTTCACCCTCTCAGGA 60.500 47.826 0.00 0.00 37.67 3.86
333 336 2.827921 CCCAAAATTTCACCCTCTCAGG 59.172 50.000 0.00 0.00 34.30 3.86
334 337 2.827921 CCCCAAAATTTCACCCTCTCAG 59.172 50.000 0.00 0.00 0.00 3.35
335 338 2.448961 TCCCCAAAATTTCACCCTCTCA 59.551 45.455 0.00 0.00 0.00 3.27
336 339 3.092301 CTCCCCAAAATTTCACCCTCTC 58.908 50.000 0.00 0.00 0.00 3.20
337 340 2.450886 ACTCCCCAAAATTTCACCCTCT 59.549 45.455 0.00 0.00 0.00 3.69
338 341 2.826128 GACTCCCCAAAATTTCACCCTC 59.174 50.000 0.00 0.00 0.00 4.30
339 342 2.178984 TGACTCCCCAAAATTTCACCCT 59.821 45.455 0.00 0.00 0.00 4.34
340 343 2.299013 GTGACTCCCCAAAATTTCACCC 59.701 50.000 0.00 0.00 0.00 4.61
341 344 2.299013 GGTGACTCCCCAAAATTTCACC 59.701 50.000 6.04 6.04 44.56 4.02
342 345 3.230976 AGGTGACTCCCCAAAATTTCAC 58.769 45.455 0.00 0.00 32.90 3.18
343 346 3.611025 AGGTGACTCCCCAAAATTTCA 57.389 42.857 0.00 0.00 32.90 2.69
344 347 7.898014 ATAATAGGTGACTCCCCAAAATTTC 57.102 36.000 0.00 0.00 43.67 2.17
345 348 9.588096 GATATAATAGGTGACTCCCCAAAATTT 57.412 33.333 0.00 0.00 43.67 1.82
346 349 8.732854 TGATATAATAGGTGACTCCCCAAAATT 58.267 33.333 0.00 0.00 43.67 1.82
347 350 8.287904 TGATATAATAGGTGACTCCCCAAAAT 57.712 34.615 0.00 0.00 43.67 1.82
348 351 7.202186 CCTGATATAATAGGTGACTCCCCAAAA 60.202 40.741 0.00 0.00 43.67 2.44
349 352 6.272324 CCTGATATAATAGGTGACTCCCCAAA 59.728 42.308 0.00 0.00 43.67 3.28
350 353 5.785423 CCTGATATAATAGGTGACTCCCCAA 59.215 44.000 0.00 0.00 43.67 4.12
351 354 5.162760 ACCTGATATAATAGGTGACTCCCCA 60.163 44.000 9.74 0.00 45.30 4.96
352 355 5.342866 ACCTGATATAATAGGTGACTCCCC 58.657 45.833 9.74 0.00 45.30 4.81
361 364 6.831664 ATTAGCCCCACCTGATATAATAGG 57.168 41.667 4.54 4.54 40.01 2.57
362 365 9.838339 CTTTATTAGCCCCACCTGATATAATAG 57.162 37.037 0.00 0.00 0.00 1.73
363 366 8.272173 GCTTTATTAGCCCCACCTGATATAATA 58.728 37.037 0.00 0.00 44.48 0.98
364 367 7.119387 GCTTTATTAGCCCCACCTGATATAAT 58.881 38.462 0.00 0.00 44.48 1.28
365 368 6.481643 GCTTTATTAGCCCCACCTGATATAA 58.518 40.000 0.00 0.00 44.48 0.98
366 369 6.062258 GCTTTATTAGCCCCACCTGATATA 57.938 41.667 0.00 0.00 44.48 0.86
367 370 4.923415 GCTTTATTAGCCCCACCTGATAT 58.077 43.478 0.00 0.00 44.48 1.63
368 371 4.367039 GCTTTATTAGCCCCACCTGATA 57.633 45.455 0.00 0.00 44.48 2.15
369 372 3.229697 GCTTTATTAGCCCCACCTGAT 57.770 47.619 0.00 0.00 44.48 2.90
370 373 2.729028 GCTTTATTAGCCCCACCTGA 57.271 50.000 0.00 0.00 44.48 3.86
380 383 9.430838 CGAACATCTCATTCAAAGCTTTATTAG 57.569 33.333 12.25 4.23 0.00 1.73
381 384 8.946085 ACGAACATCTCATTCAAAGCTTTATTA 58.054 29.630 12.25 0.31 0.00 0.98
382 385 7.820648 ACGAACATCTCATTCAAAGCTTTATT 58.179 30.769 12.25 0.00 0.00 1.40
383 386 7.383102 ACGAACATCTCATTCAAAGCTTTAT 57.617 32.000 12.25 0.00 0.00 1.40
384 387 6.801539 ACGAACATCTCATTCAAAGCTTTA 57.198 33.333 12.25 0.00 0.00 1.85
385 388 5.695851 ACGAACATCTCATTCAAAGCTTT 57.304 34.783 5.69 5.69 0.00 3.51
386 389 5.009010 ACAACGAACATCTCATTCAAAGCTT 59.991 36.000 0.00 0.00 0.00 3.74
387 390 4.516698 ACAACGAACATCTCATTCAAAGCT 59.483 37.500 0.00 0.00 0.00 3.74
388 391 4.614284 CACAACGAACATCTCATTCAAAGC 59.386 41.667 0.00 0.00 0.00 3.51
389 392 5.989249 TCACAACGAACATCTCATTCAAAG 58.011 37.500 0.00 0.00 0.00 2.77
390 393 6.370433 TTCACAACGAACATCTCATTCAAA 57.630 33.333 0.00 0.00 0.00 2.69
391 394 6.370433 TTTCACAACGAACATCTCATTCAA 57.630 33.333 0.00 0.00 31.73 2.69
392 395 6.348458 GGATTTCACAACGAACATCTCATTCA 60.348 38.462 0.00 0.00 31.73 2.57
393 396 6.024049 GGATTTCACAACGAACATCTCATTC 58.976 40.000 0.00 0.00 31.73 2.67
394 397 5.707298 AGGATTTCACAACGAACATCTCATT 59.293 36.000 0.00 0.00 31.73 2.57
395 398 5.248640 AGGATTTCACAACGAACATCTCAT 58.751 37.500 0.00 0.00 31.73 2.90
396 399 4.641396 AGGATTTCACAACGAACATCTCA 58.359 39.130 0.00 0.00 31.73 3.27
397 400 4.690748 TGAGGATTTCACAACGAACATCTC 59.309 41.667 0.00 0.00 31.73 2.75
398 401 4.641396 TGAGGATTTCACAACGAACATCT 58.359 39.130 0.00 0.00 31.73 2.90
399 402 5.551760 ATGAGGATTTCACAACGAACATC 57.448 39.130 0.00 0.00 38.99 3.06
400 403 6.429692 TGTTATGAGGATTTCACAACGAACAT 59.570 34.615 0.00 0.00 44.40 2.71
401 404 5.760743 TGTTATGAGGATTTCACAACGAACA 59.239 36.000 0.00 0.00 44.40 3.18
402 405 6.236017 TGTTATGAGGATTTCACAACGAAC 57.764 37.500 0.00 0.00 44.40 3.95
403 406 7.447374 AATGTTATGAGGATTTCACAACGAA 57.553 32.000 0.00 0.00 44.40 3.85
404 407 7.447374 AAATGTTATGAGGATTTCACAACGA 57.553 32.000 0.00 0.00 44.40 3.85
405 408 8.519492 AAAAATGTTATGAGGATTTCACAACG 57.481 30.769 0.00 0.00 44.40 4.10
440 443 9.248291 CAAGCACAAATAAAAATAGACACACTT 57.752 29.630 0.00 0.00 0.00 3.16
441 444 8.413229 ACAAGCACAAATAAAAATAGACACACT 58.587 29.630 0.00 0.00 0.00 3.55
442 445 8.574196 ACAAGCACAAATAAAAATAGACACAC 57.426 30.769 0.00 0.00 0.00 3.82
455 458 9.213799 GGGAAAATTGAAATACAAGCACAAATA 57.786 29.630 0.00 0.00 42.02 1.40
456 459 7.938490 AGGGAAAATTGAAATACAAGCACAAAT 59.062 29.630 0.00 0.00 42.02 2.32
457 460 7.278875 AGGGAAAATTGAAATACAAGCACAAA 58.721 30.769 0.00 0.00 42.02 2.83
458 461 6.825610 AGGGAAAATTGAAATACAAGCACAA 58.174 32.000 0.00 0.00 42.02 3.33
459 462 6.418057 AGGGAAAATTGAAATACAAGCACA 57.582 33.333 0.00 0.00 42.02 4.57
460 463 7.826690 TCTAGGGAAAATTGAAATACAAGCAC 58.173 34.615 0.00 0.00 42.02 4.40
461 464 7.669722 ACTCTAGGGAAAATTGAAATACAAGCA 59.330 33.333 0.00 0.00 42.02 3.91
462 465 8.056407 ACTCTAGGGAAAATTGAAATACAAGC 57.944 34.615 0.00 0.00 42.02 4.01
468 471 8.713971 ACCAAAAACTCTAGGGAAAATTGAAAT 58.286 29.630 0.00 0.00 0.00 2.17
469 472 7.984617 CACCAAAAACTCTAGGGAAAATTGAAA 59.015 33.333 0.00 0.00 0.00 2.69
470 473 7.418483 CCACCAAAAACTCTAGGGAAAATTGAA 60.418 37.037 0.00 0.00 0.00 2.69
471 474 6.041523 CCACCAAAAACTCTAGGGAAAATTGA 59.958 38.462 0.00 0.00 0.00 2.57
472 475 6.041523 TCCACCAAAAACTCTAGGGAAAATTG 59.958 38.462 0.00 0.00 0.00 2.32
473 476 6.140377 TCCACCAAAAACTCTAGGGAAAATT 58.860 36.000 0.00 0.00 0.00 1.82
474 477 5.711698 TCCACCAAAAACTCTAGGGAAAAT 58.288 37.500 0.00 0.00 0.00 1.82
475 478 5.132043 TCCACCAAAAACTCTAGGGAAAA 57.868 39.130 0.00 0.00 0.00 2.29
476 479 4.799715 TCCACCAAAAACTCTAGGGAAA 57.200 40.909 0.00 0.00 0.00 3.13
477 480 4.352595 TCATCCACCAAAAACTCTAGGGAA 59.647 41.667 0.00 0.00 0.00 3.97
478 481 3.913799 TCATCCACCAAAAACTCTAGGGA 59.086 43.478 0.00 0.00 0.00 4.20
479 482 4.301072 TCATCCACCAAAAACTCTAGGG 57.699 45.455 0.00 0.00 0.00 3.53
480 483 4.641989 CCATCATCCACCAAAAACTCTAGG 59.358 45.833 0.00 0.00 0.00 3.02
481 484 5.500234 TCCATCATCCACCAAAAACTCTAG 58.500 41.667 0.00 0.00 0.00 2.43
482 485 5.512942 TCCATCATCCACCAAAAACTCTA 57.487 39.130 0.00 0.00 0.00 2.43
483 486 4.387026 TCCATCATCCACCAAAAACTCT 57.613 40.909 0.00 0.00 0.00 3.24
484 487 4.142093 CCATCCATCATCCACCAAAAACTC 60.142 45.833 0.00 0.00 0.00 3.01
485 488 3.770933 CCATCCATCATCCACCAAAAACT 59.229 43.478 0.00 0.00 0.00 2.66
486 489 3.118665 CCCATCCATCATCCACCAAAAAC 60.119 47.826 0.00 0.00 0.00 2.43
487 490 3.106054 CCCATCCATCATCCACCAAAAA 58.894 45.455 0.00 0.00 0.00 1.94
488 491 2.044215 ACCCATCCATCATCCACCAAAA 59.956 45.455 0.00 0.00 0.00 2.44
489 492 1.645391 ACCCATCCATCATCCACCAAA 59.355 47.619 0.00 0.00 0.00 3.28
490 493 1.215173 GACCCATCCATCATCCACCAA 59.785 52.381 0.00 0.00 0.00 3.67
491 494 0.846015 GACCCATCCATCATCCACCA 59.154 55.000 0.00 0.00 0.00 4.17
492 495 1.143813 AGACCCATCCATCATCCACC 58.856 55.000 0.00 0.00 0.00 4.61
493 496 2.173356 TGAAGACCCATCCATCATCCAC 59.827 50.000 0.00 0.00 0.00 4.02
494 497 2.490961 TGAAGACCCATCCATCATCCA 58.509 47.619 0.00 0.00 0.00 3.41
495 498 3.117738 AGTTGAAGACCCATCCATCATCC 60.118 47.826 0.00 0.00 0.00 3.51
496 499 4.162040 AGTTGAAGACCCATCCATCATC 57.838 45.455 0.00 0.00 0.00 2.92
497 500 4.598036 AAGTTGAAGACCCATCCATCAT 57.402 40.909 0.00 0.00 0.00 2.45
498 501 4.387026 AAAGTTGAAGACCCATCCATCA 57.613 40.909 0.00 0.00 0.00 3.07
499 502 4.524328 ACAAAAGTTGAAGACCCATCCATC 59.476 41.667 0.00 0.00 0.00 3.51
500 503 4.482990 ACAAAAGTTGAAGACCCATCCAT 58.517 39.130 0.00 0.00 0.00 3.41
501 504 3.888930 GACAAAAGTTGAAGACCCATCCA 59.111 43.478 0.00 0.00 0.00 3.41
502 505 3.888930 TGACAAAAGTTGAAGACCCATCC 59.111 43.478 0.00 0.00 0.00 3.51
503 506 5.514274 TTGACAAAAGTTGAAGACCCATC 57.486 39.130 0.00 0.00 0.00 3.51
504 507 6.484364 AATTGACAAAAGTTGAAGACCCAT 57.516 33.333 0.00 0.00 0.00 4.00
505 508 5.930837 AATTGACAAAAGTTGAAGACCCA 57.069 34.783 0.00 0.00 0.00 4.51
522 525 8.900802 ACCCCTAATAGAGGCAATAATAATTGA 58.099 33.333 2.38 0.00 45.17 2.57
523 526 8.960591 CACCCCTAATAGAGGCAATAATAATTG 58.039 37.037 0.00 0.00 45.17 2.32
524 527 8.116026 CCACCCCTAATAGAGGCAATAATAATT 58.884 37.037 0.00 0.00 45.17 1.40
525 528 7.312567 CCCACCCCTAATAGAGGCAATAATAAT 60.313 40.741 0.00 0.00 45.17 1.28
526 529 6.011981 CCCACCCCTAATAGAGGCAATAATAA 60.012 42.308 0.00 0.00 45.17 1.40
527 530 5.491078 CCCACCCCTAATAGAGGCAATAATA 59.509 44.000 0.00 0.00 45.17 0.98
528 531 4.292306 CCCACCCCTAATAGAGGCAATAAT 59.708 45.833 0.00 0.00 45.17 1.28
529 532 3.655777 CCCACCCCTAATAGAGGCAATAA 59.344 47.826 0.00 0.00 45.17 1.40
530 533 3.256704 CCCACCCCTAATAGAGGCAATA 58.743 50.000 0.00 0.00 45.17 1.90
531 534 2.065799 CCCACCCCTAATAGAGGCAAT 58.934 52.381 0.00 0.00 45.17 3.56
532 535 1.518367 CCCACCCCTAATAGAGGCAA 58.482 55.000 0.00 0.00 45.17 4.52
533 536 1.060163 GCCCACCCCTAATAGAGGCA 61.060 60.000 0.00 0.00 45.17 4.75
534 537 1.060163 TGCCCACCCCTAATAGAGGC 61.060 60.000 0.00 0.00 45.17 4.70
535 538 0.765510 GTGCCCACCCCTAATAGAGG 59.234 60.000 0.00 0.00 46.25 3.69
536 539 1.141053 GTGTGCCCACCCCTAATAGAG 59.859 57.143 0.00 0.00 35.44 2.43
537 540 1.209621 GTGTGCCCACCCCTAATAGA 58.790 55.000 0.00 0.00 35.44 1.98
538 541 1.141053 GAGTGTGCCCACCCCTAATAG 59.859 57.143 0.00 0.00 42.88 1.73
539 542 1.209621 GAGTGTGCCCACCCCTAATA 58.790 55.000 0.00 0.00 42.88 0.98
540 543 0.844661 TGAGTGTGCCCACCCCTAAT 60.845 55.000 0.00 0.00 42.88 1.73
1599 3363 6.569179 ATTCGGTTAAGCAAACAACTGTAT 57.431 33.333 5.38 0.00 40.08 2.29
1851 3625 5.046304 CCTCTTCAAAACATCTCCCTCTACA 60.046 44.000 0.00 0.00 0.00 2.74
3040 5009 0.821301 TCGCTTTCACACCATTGCCA 60.821 50.000 0.00 0.00 0.00 4.92
3368 5337 4.520492 TCTTTTGAGCAATCAAGGACTTCC 59.480 41.667 0.00 0.00 0.00 3.46
4637 6663 3.257627 CCCCCTGCCTCCAACTATA 57.742 57.895 0.00 0.00 0.00 1.31
4638 6664 4.089839 CCCCCTGCCTCCAACTAT 57.910 61.111 0.00 0.00 0.00 2.12
4652 6678 3.124921 CATCAACGTGCGTCCCCC 61.125 66.667 0.00 0.00 0.00 5.40
4653 6679 2.869503 ATCCATCAACGTGCGTCCCC 62.870 60.000 0.00 0.00 0.00 4.81
4654 6680 1.449601 ATCCATCAACGTGCGTCCC 60.450 57.895 0.00 0.00 0.00 4.46
4655 6681 1.019278 ACATCCATCAACGTGCGTCC 61.019 55.000 0.00 0.00 0.00 4.79
4656 6682 0.095245 CACATCCATCAACGTGCGTC 59.905 55.000 0.00 0.00 0.00 5.19
4657 6683 1.298157 CCACATCCATCAACGTGCGT 61.298 55.000 0.00 0.00 0.00 5.24
4658 6684 1.425031 CCACATCCATCAACGTGCG 59.575 57.895 0.00 0.00 0.00 5.34
4659 6685 1.656818 CCCCACATCCATCAACGTGC 61.657 60.000 0.00 0.00 0.00 5.34
4660 6686 1.031571 CCCCCACATCCATCAACGTG 61.032 60.000 0.00 0.00 0.00 4.49
4661 6687 1.302949 CCCCCACATCCATCAACGT 59.697 57.895 0.00 0.00 0.00 3.99
4662 6688 2.120909 GCCCCCACATCCATCAACG 61.121 63.158 0.00 0.00 0.00 4.10
4663 6689 1.000233 TGCCCCCACATCCATCAAC 60.000 57.895 0.00 0.00 0.00 3.18
4664 6690 1.307309 CTGCCCCCACATCCATCAA 59.693 57.895 0.00 0.00 0.00 2.57
4682 6708 1.250840 AAAAATCGAGTGGGGGCAGC 61.251 55.000 0.00 0.00 0.00 5.25
4685 6711 0.966179 AACAAAAATCGAGTGGGGGC 59.034 50.000 0.00 0.00 0.00 5.80
4686 6712 1.199097 CGAACAAAAATCGAGTGGGGG 59.801 52.381 0.00 0.00 42.76 5.40
4687 6713 1.401018 GCGAACAAAAATCGAGTGGGG 60.401 52.381 0.00 0.00 42.76 4.96
4688 6714 1.265635 TGCGAACAAAAATCGAGTGGG 59.734 47.619 0.00 0.00 42.76 4.61
4689 6715 2.307049 GTGCGAACAAAAATCGAGTGG 58.693 47.619 0.00 0.00 42.76 4.00
4692 6718 0.967803 GCGTGCGAACAAAAATCGAG 59.032 50.000 0.00 0.00 42.76 4.04
4694 6720 1.120551 CAAGCGTGCGAACAAAAATCG 59.879 47.619 0.00 0.00 42.99 3.34
4695 6721 1.451651 CCAAGCGTGCGAACAAAAATC 59.548 47.619 0.00 0.00 0.00 2.17
4696 6722 1.066303 TCCAAGCGTGCGAACAAAAAT 59.934 42.857 0.00 0.00 0.00 1.82
4698 6724 0.665835 ATCCAAGCGTGCGAACAAAA 59.334 45.000 0.00 0.00 0.00 2.44
4701 6727 2.379634 CGATCCAAGCGTGCGAACA 61.380 57.895 0.00 0.00 0.00 3.18
4702 6728 1.421410 ATCGATCCAAGCGTGCGAAC 61.421 55.000 5.15 0.00 34.46 3.95
4703 6729 1.145759 GATCGATCCAAGCGTGCGAA 61.146 55.000 14.76 0.00 34.46 4.70
4706 6732 3.324035 GGATCGATCCAAGCGTGC 58.676 61.111 34.65 8.76 46.38 5.34
4715 6741 2.656085 CGTAGCTTGACAGGATCGATC 58.344 52.381 17.36 17.36 0.00 3.69
4716 6742 2.783828 CGTAGCTTGACAGGATCGAT 57.216 50.000 0.00 0.00 0.00 3.59
4731 6757 4.388499 AAGTGGGGGCACGCGTAG 62.388 66.667 13.44 7.98 44.67 3.51
4732 6758 4.690719 CAAGTGGGGGCACGCGTA 62.691 66.667 13.44 0.00 44.67 4.42
4740 6766 1.381191 GTAATGGGCCAAGTGGGGG 60.381 63.158 11.89 0.00 37.04 5.40
4741 6767 0.041090 AAGTAATGGGCCAAGTGGGG 59.959 55.000 11.89 0.00 37.04 4.96
4742 6768 1.550072 CAAAGTAATGGGCCAAGTGGG 59.450 52.381 11.89 0.00 40.85 4.61
4743 6769 1.066929 GCAAAGTAATGGGCCAAGTGG 60.067 52.381 11.89 0.00 38.53 4.00
4744 6770 1.066929 GGCAAAGTAATGGGCCAAGTG 60.067 52.381 11.89 3.67 45.70 3.16
4745 6771 1.266178 GGCAAAGTAATGGGCCAAGT 58.734 50.000 11.89 3.92 45.70 3.16
4749 6775 2.063979 GGGGGCAAAGTAATGGGCC 61.064 63.158 0.00 0.00 45.67 5.80
4750 6776 2.423064 CGGGGGCAAAGTAATGGGC 61.423 63.158 0.00 0.00 0.00 5.36
4751 6777 2.423064 GCGGGGGCAAAGTAATGGG 61.423 63.158 0.00 0.00 0.00 4.00
4752 6778 1.379843 AGCGGGGGCAAAGTAATGG 60.380 57.895 0.00 0.00 0.00 3.16
4753 6779 0.679640 TGAGCGGGGGCAAAGTAATG 60.680 55.000 0.00 0.00 0.00 1.90
4754 6780 0.394352 CTGAGCGGGGGCAAAGTAAT 60.394 55.000 0.00 0.00 0.00 1.89
4755 6781 1.002624 CTGAGCGGGGGCAAAGTAA 60.003 57.895 0.00 0.00 0.00 2.24
4756 6782 2.668632 CTGAGCGGGGGCAAAGTA 59.331 61.111 0.00 0.00 0.00 2.24
4763 6789 3.963124 AAATTGGGCTGAGCGGGGG 62.963 63.158 0.00 0.00 0.00 5.40
4764 6790 2.362889 AAATTGGGCTGAGCGGGG 60.363 61.111 0.00 0.00 0.00 5.73
4765 6791 0.967380 AAGAAATTGGGCTGAGCGGG 60.967 55.000 0.00 0.00 0.00 6.13
4766 6792 0.171903 CAAGAAATTGGGCTGAGCGG 59.828 55.000 0.00 0.00 0.00 5.52
4767 6793 0.883833 ACAAGAAATTGGGCTGAGCG 59.116 50.000 0.00 0.00 0.00 5.03
4768 6794 3.391506 AAACAAGAAATTGGGCTGAGC 57.608 42.857 0.00 0.00 0.00 4.26
4769 6795 7.656948 TCAAAATAAACAAGAAATTGGGCTGAG 59.343 33.333 0.00 0.00 0.00 3.35
4770 6796 7.504403 TCAAAATAAACAAGAAATTGGGCTGA 58.496 30.769 0.00 0.00 0.00 4.26
4771 6797 7.727331 TCAAAATAAACAAGAAATTGGGCTG 57.273 32.000 0.00 0.00 0.00 4.85
4772 6798 8.744568 TTTCAAAATAAACAAGAAATTGGGCT 57.255 26.923 0.00 0.00 0.00 5.19
4773 6799 9.449550 CTTTTCAAAATAAACAAGAAATTGGGC 57.550 29.630 0.00 0.00 0.00 5.36
4774 6800 9.449550 GCTTTTCAAAATAAACAAGAAATTGGG 57.550 29.630 0.00 0.00 0.00 4.12
4775 6801 9.449550 GGCTTTTCAAAATAAACAAGAAATTGG 57.550 29.630 0.00 0.00 0.00 3.16
4776 6802 9.449550 GGGCTTTTCAAAATAAACAAGAAATTG 57.550 29.630 0.00 0.00 0.00 2.32
4777 6803 9.183368 TGGGCTTTTCAAAATAAACAAGAAATT 57.817 25.926 0.00 0.00 0.00 1.82
4778 6804 8.744568 TGGGCTTTTCAAAATAAACAAGAAAT 57.255 26.923 0.00 0.00 0.00 2.17
4779 6805 8.744568 ATGGGCTTTTCAAAATAAACAAGAAA 57.255 26.923 0.00 0.00 0.00 2.52
4780 6806 9.838339 TTATGGGCTTTTCAAAATAAACAAGAA 57.162 25.926 0.00 0.00 0.00 2.52
4781 6807 9.838339 TTTATGGGCTTTTCAAAATAAACAAGA 57.162 25.926 0.00 0.00 0.00 3.02
4810 6836 9.073475 TGCTTCTAGCCTTCTACAAATTTAAAA 57.927 29.630 0.00 0.00 41.51 1.52
4811 6837 8.630054 TGCTTCTAGCCTTCTACAAATTTAAA 57.370 30.769 0.00 0.00 41.51 1.52
4812 6838 7.148239 GCTGCTTCTAGCCTTCTACAAATTTAA 60.148 37.037 0.00 0.00 41.51 1.52
4813 6839 6.316390 GCTGCTTCTAGCCTTCTACAAATTTA 59.684 38.462 0.00 0.00 41.51 1.40
4814 6840 5.124617 GCTGCTTCTAGCCTTCTACAAATTT 59.875 40.000 0.00 0.00 41.51 1.82
4815 6841 4.637977 GCTGCTTCTAGCCTTCTACAAATT 59.362 41.667 0.00 0.00 41.51 1.82
4816 6842 4.195416 GCTGCTTCTAGCCTTCTACAAAT 58.805 43.478 0.00 0.00 41.51 2.32
4817 6843 3.600388 GCTGCTTCTAGCCTTCTACAAA 58.400 45.455 0.00 0.00 41.51 2.83
4818 6844 3.252974 GCTGCTTCTAGCCTTCTACAA 57.747 47.619 0.00 0.00 41.51 2.41
4819 6845 2.969628 GCTGCTTCTAGCCTTCTACA 57.030 50.000 0.00 0.00 41.51 2.74
4827 6853 1.811679 GTCGTGGGCTGCTTCTAGC 60.812 63.158 0.00 0.00 42.82 3.42
4828 6854 1.153549 GGTCGTGGGCTGCTTCTAG 60.154 63.158 0.00 0.00 0.00 2.43
4829 6855 1.476845 TTGGTCGTGGGCTGCTTCTA 61.477 55.000 0.00 0.00 0.00 2.10
4830 6856 2.738213 CTTGGTCGTGGGCTGCTTCT 62.738 60.000 0.00 0.00 0.00 2.85
4831 6857 2.281484 TTGGTCGTGGGCTGCTTC 60.281 61.111 0.00 0.00 0.00 3.86
4832 6858 2.281761 CTTGGTCGTGGGCTGCTT 60.282 61.111 0.00 0.00 0.00 3.91
4833 6859 2.337879 TTTCTTGGTCGTGGGCTGCT 62.338 55.000 0.00 0.00 0.00 4.24
4834 6860 1.896660 TTTCTTGGTCGTGGGCTGC 60.897 57.895 0.00 0.00 0.00 5.25
4835 6861 0.817634 TGTTTCTTGGTCGTGGGCTG 60.818 55.000 0.00 0.00 0.00 4.85
4836 6862 0.535102 CTGTTTCTTGGTCGTGGGCT 60.535 55.000 0.00 0.00 0.00 5.19
4837 6863 1.949257 CTGTTTCTTGGTCGTGGGC 59.051 57.895 0.00 0.00 0.00 5.36
4838 6864 1.515521 GGCTGTTTCTTGGTCGTGGG 61.516 60.000 0.00 0.00 0.00 4.61
4839 6865 0.535102 AGGCTGTTTCTTGGTCGTGG 60.535 55.000 0.00 0.00 0.00 4.94
4840 6866 1.798813 GTAGGCTGTTTCTTGGTCGTG 59.201 52.381 0.00 0.00 0.00 4.35
4841 6867 1.604693 CGTAGGCTGTTTCTTGGTCGT 60.605 52.381 0.00 0.00 0.00 4.34
4842 6868 1.068474 CGTAGGCTGTTTCTTGGTCG 58.932 55.000 0.00 0.00 0.00 4.79
4843 6869 0.796927 GCGTAGGCTGTTTCTTGGTC 59.203 55.000 0.00 0.00 35.83 4.02
4844 6870 0.949105 CGCGTAGGCTGTTTCTTGGT 60.949 55.000 5.78 0.00 36.88 3.67
4845 6871 1.787847 CGCGTAGGCTGTTTCTTGG 59.212 57.895 5.78 0.00 36.88 3.61
4846 6872 1.132640 GCGCGTAGGCTGTTTCTTG 59.867 57.895 8.43 0.00 36.88 3.02
4847 6873 2.380410 CGCGCGTAGGCTGTTTCTT 61.380 57.895 24.19 0.00 36.88 2.52
4848 6874 2.809601 CGCGCGTAGGCTGTTTCT 60.810 61.111 24.19 0.00 36.88 2.52
4849 6875 2.789203 CTCGCGCGTAGGCTGTTTC 61.789 63.158 30.98 0.00 36.88 2.78
4850 6876 2.809601 CTCGCGCGTAGGCTGTTT 60.810 61.111 30.98 0.00 36.88 2.83
4856 6882 4.492160 TTCTGGCTCGCGCGTAGG 62.492 66.667 30.98 20.85 36.88 3.18
4857 6883 3.248171 GTTCTGGCTCGCGCGTAG 61.248 66.667 30.98 24.62 36.88 3.51
4858 6884 4.789075 GGTTCTGGCTCGCGCGTA 62.789 66.667 30.98 15.53 36.88 4.42
4860 6886 4.492160 TAGGTTCTGGCTCGCGCG 62.492 66.667 26.76 26.76 36.88 6.86
4861 6887 2.886124 GTAGGTTCTGGCTCGCGC 60.886 66.667 0.00 0.00 0.00 6.86
4862 6888 2.337749 ATCGTAGGTTCTGGCTCGCG 62.338 60.000 0.00 0.00 0.00 5.87
4863 6889 0.179108 AATCGTAGGTTCTGGCTCGC 60.179 55.000 0.00 0.00 0.00 5.03
4864 6890 1.560923 CAATCGTAGGTTCTGGCTCG 58.439 55.000 0.00 0.00 0.00 5.03
4865 6891 1.291132 GCAATCGTAGGTTCTGGCTC 58.709 55.000 0.00 0.00 0.00 4.70
4866 6892 0.613260 TGCAATCGTAGGTTCTGGCT 59.387 50.000 0.00 0.00 0.00 4.75
4867 6893 1.668419 ATGCAATCGTAGGTTCTGGC 58.332 50.000 0.00 0.00 0.00 4.85
4868 6894 5.333339 CGAATAATGCAATCGTAGGTTCTGG 60.333 44.000 0.00 0.00 0.00 3.86
4869 6895 5.462068 TCGAATAATGCAATCGTAGGTTCTG 59.538 40.000 12.27 0.00 37.79 3.02
4870 6896 5.597806 TCGAATAATGCAATCGTAGGTTCT 58.402 37.500 12.27 0.00 37.79 3.01
4871 6897 5.900339 TCGAATAATGCAATCGTAGGTTC 57.100 39.130 12.27 0.32 37.79 3.62
4872 6898 5.118664 CGATCGAATAATGCAATCGTAGGTT 59.881 40.000 10.26 0.00 37.79 3.50
4873 6899 4.621460 CGATCGAATAATGCAATCGTAGGT 59.379 41.667 10.26 0.00 37.79 3.08
4874 6900 4.857037 TCGATCGAATAATGCAATCGTAGG 59.143 41.667 16.99 5.43 39.98 3.18
4875 6901 5.992489 TCGATCGAATAATGCAATCGTAG 57.008 39.130 16.99 7.18 39.98 3.51
4876 6902 6.090129 TGATCGATCGAATAATGCAATCGTA 58.910 36.000 23.50 0.00 39.98 3.43
4877 6903 4.923281 TGATCGATCGAATAATGCAATCGT 59.077 37.500 23.50 0.00 39.98 3.73
4878 6904 5.061435 ACTGATCGATCGAATAATGCAATCG 59.939 40.000 23.50 8.10 40.30 3.34
4879 6905 6.239226 CACTGATCGATCGAATAATGCAATC 58.761 40.000 23.50 11.97 0.00 2.67
4880 6906 5.390251 GCACTGATCGATCGAATAATGCAAT 60.390 40.000 28.27 11.16 0.00 3.56
4881 6907 4.084380 GCACTGATCGATCGAATAATGCAA 60.084 41.667 28.27 6.41 0.00 4.08
4882 6908 3.429881 GCACTGATCGATCGAATAATGCA 59.570 43.478 28.27 17.30 0.00 3.96
4883 6909 3.480985 CGCACTGATCGATCGAATAATGC 60.481 47.826 23.50 24.86 0.00 3.56
4884 6910 3.059966 CCGCACTGATCGATCGAATAATG 59.940 47.826 23.50 18.16 0.00 1.90
4885 6911 3.245797 CCGCACTGATCGATCGAATAAT 58.754 45.455 23.50 5.07 0.00 1.28
4886 6912 2.661594 CCGCACTGATCGATCGAATAA 58.338 47.619 23.50 9.61 0.00 1.40
4887 6913 1.666023 GCCGCACTGATCGATCGAATA 60.666 52.381 23.50 12.87 0.00 1.75
4888 6914 0.941463 GCCGCACTGATCGATCGAAT 60.941 55.000 23.50 10.75 0.00 3.34
4889 6915 1.588932 GCCGCACTGATCGATCGAA 60.589 57.895 23.50 5.51 0.00 3.71
4890 6916 2.026157 GCCGCACTGATCGATCGA 59.974 61.111 21.86 21.86 0.00 3.59
4891 6917 3.032609 GGCCGCACTGATCGATCG 61.033 66.667 20.03 9.36 0.00 3.69
4892 6918 2.663188 GGGCCGCACTGATCGATC 60.663 66.667 18.72 18.72 0.00 3.69
4893 6919 2.930385 CTTGGGCCGCACTGATCGAT 62.930 60.000 0.00 0.00 0.00 3.59
4894 6920 3.664025 CTTGGGCCGCACTGATCGA 62.664 63.158 0.00 0.00 0.00 3.59
4895 6921 3.197790 CTTGGGCCGCACTGATCG 61.198 66.667 0.00 0.00 0.00 3.69
4896 6922 2.045926 ACTTGGGCCGCACTGATC 60.046 61.111 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.