Multiple sequence alignment - TraesCS5B01G376700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G376700 chr5B 100.000 2795 0 0 1 2795 554635813 554638607 0.000000e+00 5162.0
1 TraesCS5B01G376700 chr5B 90.385 52 2 3 230 281 692520268 692520316 6.460000e-07 65.8
2 TraesCS5B01G376700 chr5D 86.943 1570 127 43 9 1510 453880642 453882201 0.000000e+00 1692.0
3 TraesCS5B01G376700 chr5D 88.223 467 23 15 1496 1958 453882232 453882670 1.910000e-146 529.0
4 TraesCS5B01G376700 chr5D 83.200 250 35 7 2451 2695 565739114 565738867 3.620000e-54 222.0
5 TraesCS5B01G376700 chr5D 87.591 137 4 3 2564 2700 453883644 453883767 2.240000e-31 147.0
6 TraesCS5B01G376700 chr5D 87.500 112 4 9 2438 2548 453883477 453883579 1.360000e-23 121.0
7 TraesCS5B01G376700 chr5A 88.627 976 59 16 985 1941 572987527 572988469 0.000000e+00 1140.0
8 TraesCS5B01G376700 chr5A 94.203 69 2 2 2110 2176 572988497 572988565 1.370000e-18 104.0
9 TraesCS5B01G376700 chr5A 91.228 57 4 1 468 523 572986984 572987040 2.990000e-10 76.8
10 TraesCS5B01G376700 chr5A 90.000 50 5 0 233 282 320275772 320275821 6.460000e-07 65.8
11 TraesCS5B01G376700 chr1B 100.000 131 0 0 1979 2109 688707704 688707834 2.780000e-60 243.0
12 TraesCS5B01G376700 chr1B 96.212 132 5 0 1981 2112 526375923 526375792 1.690000e-52 217.0
13 TraesCS5B01G376700 chr6A 96.296 135 5 0 1982 2116 617047777 617047911 3.620000e-54 222.0
14 TraesCS5B01G376700 chr7D 96.269 134 5 0 1976 2109 246023477 246023344 1.300000e-53 220.0
15 TraesCS5B01G376700 chr3A 96.296 135 4 1 1979 2113 547196117 547195984 1.300000e-53 220.0
16 TraesCS5B01G376700 chr3A 84.286 70 7 4 233 301 115386573 115386507 6.460000e-07 65.8
17 TraesCS5B01G376700 chr1A 94.964 139 7 0 1975 2113 35531104 35530966 4.690000e-53 219.0
18 TraesCS5B01G376700 chr1A 78.947 114 15 8 168 279 456336268 456336374 5.000000e-08 69.4
19 TraesCS5B01G376700 chr2A 94.964 139 6 1 1982 2120 757947763 757947900 1.690000e-52 217.0
20 TraesCS5B01G376700 chr2A 92.568 148 9 1 1983 2130 83032122 83031977 7.840000e-51 211.0
21 TraesCS5B01G376700 chr2A 75.645 349 58 19 2412 2754 59577420 59577747 6.240000e-32 148.0
22 TraesCS5B01G376700 chr7B 93.750 144 8 1 1983 2126 728671957 728671815 6.060000e-52 215.0
23 TraesCS5B01G376700 chr2D 77.513 378 71 12 2354 2729 17017722 17018087 6.060000e-52 215.0
24 TraesCS5B01G376700 chr2D 81.250 128 10 13 2414 2539 32559801 32559916 1.070000e-14 91.6
25 TraesCS5B01G376700 chr4A 81.818 253 36 6 2451 2695 607287937 607287687 1.310000e-48 204.0
26 TraesCS5B01G376700 chr4A 72.222 252 56 12 16 260 18055029 18055273 6.460000e-07 65.8
27 TraesCS5B01G376700 chr7A 90.196 51 3 2 233 283 653011582 653011534 6.460000e-07 65.8
28 TraesCS5B01G376700 chr2B 88.679 53 5 1 230 281 677044883 677044935 2.320000e-06 63.9
29 TraesCS5B01G376700 chr4D 85.000 60 7 2 223 281 477757233 477757175 3.010000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G376700 chr5B 554635813 554638607 2794 False 5162.000000 5162 100.000000 1 2795 1 chr5B.!!$F1 2794
1 TraesCS5B01G376700 chr5D 453880642 453883767 3125 False 622.250000 1692 87.564250 9 2700 4 chr5D.!!$F1 2691
2 TraesCS5B01G376700 chr5A 572986984 572988565 1581 False 440.266667 1140 91.352667 468 2176 3 chr5A.!!$F2 1708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
304 309 0.025513 GTGACGCTCACGCATTGATC 59.974 55.0 3.05 0.0 45.53 2.92 F
955 1047 0.036732 TTGACAAGCCTGCCTACCTG 59.963 55.0 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1366 1536 0.040646 TGGTCACCACCTCCTACGAT 59.959 55.0 0.0 0.0 44.17 3.73 R
2381 2615 0.105401 TGGATGGGCTGGACGGTATA 60.105 55.0 0.0 0.0 0.00 1.47 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.488778 AGATCACTTCCCTCATGATGC 57.511 47.619 0.00 0.00 33.21 3.91
28 29 2.106166 AGATCACTTCCCTCATGATGCC 59.894 50.000 0.00 0.00 33.21 4.40
30 31 1.211212 TCACTTCCCTCATGATGCCTG 59.789 52.381 0.00 0.00 0.00 4.85
36 37 1.489649 CCCTCATGATGCCTGTCTCTT 59.510 52.381 0.00 0.00 0.00 2.85
37 38 2.562635 CCTCATGATGCCTGTCTCTTG 58.437 52.381 0.00 0.00 0.00 3.02
38 39 1.941294 CTCATGATGCCTGTCTCTTGC 59.059 52.381 0.00 0.00 0.00 4.01
46 47 0.167470 CCTGTCTCTTGCGCAATGTG 59.833 55.000 25.26 17.23 0.00 3.21
54 55 1.469703 CTTGCGCAATGTGGAATGAGA 59.530 47.619 25.26 0.00 0.00 3.27
60 61 3.684305 CGCAATGTGGAATGAGAGTAACA 59.316 43.478 0.00 0.00 0.00 2.41
61 62 4.436050 CGCAATGTGGAATGAGAGTAACAC 60.436 45.833 0.00 0.00 0.00 3.32
62 63 4.436050 GCAATGTGGAATGAGAGTAACACG 60.436 45.833 0.00 0.00 0.00 4.49
80 81 1.841663 CGAGGGTGTTCCGCAACAAG 61.842 60.000 0.00 0.00 44.32 3.16
81 82 0.534203 GAGGGTGTTCCGCAACAAGA 60.534 55.000 0.00 0.00 44.32 3.02
82 83 0.535102 AGGGTGTTCCGCAACAAGAG 60.535 55.000 0.00 0.00 44.32 2.85
83 84 0.818040 GGGTGTTCCGCAACAAGAGT 60.818 55.000 0.00 0.00 44.32 3.24
84 85 0.307760 GGTGTTCCGCAACAAGAGTG 59.692 55.000 0.00 0.00 44.32 3.51
89 90 3.726517 CGCAACAAGAGTGCCCCG 61.727 66.667 0.00 0.00 0.00 5.73
104 105 2.577059 CCGCCACGGTCATAGTGT 59.423 61.111 0.00 0.00 42.73 3.55
139 140 2.405618 AGGCTGGCCTATGAGTATCA 57.594 50.000 12.94 0.00 46.14 2.15
174 175 2.254918 TTGTGTAATTTGATGCCGCG 57.745 45.000 0.00 0.00 0.00 6.46
175 176 0.449786 TGTGTAATTTGATGCCGCGG 59.550 50.000 24.05 24.05 0.00 6.46
192 193 1.954382 GCGGGAGTGACCTTTTTCTTT 59.046 47.619 0.00 0.00 38.98 2.52
194 195 3.477530 CGGGAGTGACCTTTTTCTTTCT 58.522 45.455 0.00 0.00 38.98 2.52
196 197 4.023963 CGGGAGTGACCTTTTTCTTTCTTC 60.024 45.833 0.00 0.00 38.98 2.87
201 202 7.101652 AGTGACCTTTTTCTTTCTTCTTTCC 57.898 36.000 0.00 0.00 0.00 3.13
202 203 6.096987 AGTGACCTTTTTCTTTCTTCTTTCCC 59.903 38.462 0.00 0.00 0.00 3.97
203 204 5.955355 TGACCTTTTTCTTTCTTCTTTCCCA 59.045 36.000 0.00 0.00 0.00 4.37
205 206 7.125659 TGACCTTTTTCTTTCTTCTTTCCCATT 59.874 33.333 0.00 0.00 0.00 3.16
208 209 7.254898 CCTTTTTCTTTCTTCTTTCCCATTTGC 60.255 37.037 0.00 0.00 0.00 3.68
216 217 0.034616 TTTCCCATTTGCGGGCTTTG 59.965 50.000 0.00 0.00 46.92 2.77
225 226 1.206831 GCGGGCTTTGTTCGAACTC 59.793 57.895 27.32 14.04 0.00 3.01
231 232 3.596214 GGCTTTGTTCGAACTCCTATCA 58.404 45.455 27.32 4.05 0.00 2.15
254 255 8.070034 TCATAATCAATGAAATGGCAAGTCTT 57.930 30.769 8.47 0.00 41.75 3.01
268 269 3.492011 GCAAGTCTTTTGCCACATTTCAG 59.508 43.478 0.54 0.00 39.38 3.02
269 270 4.737352 GCAAGTCTTTTGCCACATTTCAGA 60.737 41.667 0.54 0.00 39.38 3.27
271 272 5.192327 AGTCTTTTGCCACATTTCAGAAG 57.808 39.130 0.00 0.00 0.00 2.85
274 275 5.689068 GTCTTTTGCCACATTTCAGAAGAAG 59.311 40.000 0.00 0.00 35.91 2.85
276 277 5.850557 TTTGCCACATTTCAGAAGAAGAA 57.149 34.783 0.00 0.00 34.71 2.52
279 280 6.219417 TGCCACATTTCAGAAGAAGAAAAA 57.781 33.333 0.00 0.00 38.36 1.94
302 307 3.549467 GTGACGCTCACGCATTGA 58.451 55.556 3.05 0.00 45.53 2.57
303 308 2.081526 GTGACGCTCACGCATTGAT 58.918 52.632 3.05 0.00 45.53 2.57
304 309 0.025513 GTGACGCTCACGCATTGATC 59.974 55.000 3.05 0.00 45.53 2.92
323 328 6.519679 TGATCATCAAAGATGAAACAAGGG 57.480 37.500 13.07 0.00 39.49 3.95
325 330 4.996793 TCATCAAAGATGAAACAAGGGGA 58.003 39.130 7.20 0.00 39.49 4.81
335 340 5.732331 TGAAACAAGGGGATATCTGGATT 57.268 39.130 2.05 0.00 0.00 3.01
349 354 2.242965 TCTGGATTGGTGCCATTCATCT 59.757 45.455 13.14 0.00 34.33 2.90
360 365 3.190323 ATTCATCTGGCGCGCATGC 62.190 57.895 34.42 16.64 37.91 4.06
362 367 4.182315 CATCTGGCGCGCATGCAA 62.182 61.111 34.42 13.40 42.97 4.08
363 368 3.214123 ATCTGGCGCGCATGCAAT 61.214 55.556 34.42 15.17 42.97 3.56
364 369 2.777972 ATCTGGCGCGCATGCAATT 61.778 52.632 34.42 8.76 42.97 2.32
366 371 1.226632 CTGGCGCGCATGCAATTAA 60.227 52.632 34.42 5.03 42.97 1.40
367 372 1.473857 CTGGCGCGCATGCAATTAAC 61.474 55.000 34.42 11.73 42.97 2.01
368 373 1.226660 GGCGCGCATGCAATTAACT 60.227 52.632 34.42 0.00 42.97 2.24
373 378 1.919918 GCGCATGCAATTAACTGAACC 59.080 47.619 19.57 0.00 42.15 3.62
392 397 5.656416 TGAACCCAATGAGTCTTGAGTTTTT 59.344 36.000 0.00 0.00 28.62 1.94
402 407 2.159114 TCTTGAGTTTTTGTGGGCTTGC 60.159 45.455 0.00 0.00 0.00 4.01
403 408 1.484038 TGAGTTTTTGTGGGCTTGCT 58.516 45.000 0.00 0.00 0.00 3.91
409 414 0.396974 TTTGTGGGCTTGCTCCTGTT 60.397 50.000 0.00 0.00 0.00 3.16
411 416 2.598394 TGGGCTTGCTCCTGTTGC 60.598 61.111 0.00 0.00 0.00 4.17
412 417 2.598394 GGGCTTGCTCCTGTTGCA 60.598 61.111 0.00 0.00 38.80 4.08
414 419 1.601759 GGCTTGCTCCTGTTGCAGA 60.602 57.895 0.00 0.00 41.71 4.26
416 421 0.888285 GCTTGCTCCTGTTGCAGAGT 60.888 55.000 3.00 0.00 41.71 3.24
436 442 5.597182 AGAGTTGGCCGTATAATTCAGAGTA 59.403 40.000 0.00 0.00 0.00 2.59
440 446 7.280205 AGTTGGCCGTATAATTCAGAGTAAAAG 59.720 37.037 0.00 0.00 0.00 2.27
444 450 8.837389 GGCCGTATAATTCAGAGTAAAAGAAAT 58.163 33.333 0.00 0.00 0.00 2.17
529 539 1.009389 GCTAGGCGTGTCACAGTCAC 61.009 60.000 3.42 0.00 0.00 3.67
536 558 0.235665 GTGTCACAGTCACGCCATTG 59.764 55.000 0.00 0.00 0.00 2.82
607 646 1.330829 CTAGACAGCACGCGAGATGTA 59.669 52.381 26.39 11.94 0.00 2.29
625 667 1.279271 GTAGCATGGGTGGAGTTCAGT 59.721 52.381 0.00 0.00 0.00 3.41
668 728 1.006086 TCCATTCTAATGCACGCACG 58.994 50.000 0.00 0.00 35.08 5.34
671 731 0.096976 ATTCTAATGCACGCACGCAC 59.903 50.000 0.00 0.00 46.56 5.34
672 732 2.221704 TTCTAATGCACGCACGCACG 62.222 55.000 0.00 0.00 46.56 5.34
673 733 4.437959 TAATGCACGCACGCACGC 62.438 61.111 0.00 0.00 46.56 5.34
719 779 0.321021 TTTACCCTAGAAACCGCGCA 59.679 50.000 8.75 0.00 0.00 6.09
814 900 2.676839 TCTAGAGCCGAGACACGTAAAG 59.323 50.000 0.00 0.00 40.78 1.85
820 906 1.320555 CCGAGACACGTAAAGCAATCG 59.679 52.381 0.00 0.00 40.78 3.34
927 1019 2.743928 GGGTCACAGGCAGCTTCG 60.744 66.667 0.00 0.00 0.00 3.79
954 1046 0.771127 TTTGACAAGCCTGCCTACCT 59.229 50.000 0.00 0.00 0.00 3.08
955 1047 0.036732 TTGACAAGCCTGCCTACCTG 59.963 55.000 0.00 0.00 0.00 4.00
982 1113 5.208890 TCTTAGCTAGCTCAGGGTCAAATA 58.791 41.667 23.26 0.00 0.00 1.40
992 1156 5.123979 GCTCAGGGTCAAATAAGTAGTTTGG 59.876 44.000 0.00 0.00 37.22 3.28
1084 1248 0.689623 CTCCCTGCCCATCATCTACC 59.310 60.000 0.00 0.00 0.00 3.18
1232 1396 1.000233 CACCAGTACAACGACGACGG 61.000 60.000 12.58 0.00 44.46 4.79
1329 1499 4.552365 CCGCTGATGGCACCCGAT 62.552 66.667 0.00 0.00 41.91 4.18
1362 1532 2.223525 GCCGGTCGATATATCCACTAGC 60.224 54.545 1.90 9.16 0.00 3.42
1366 1536 3.688185 GGTCGATATATCCACTAGCGTCA 59.312 47.826 9.88 0.00 30.53 4.35
1387 1557 0.898789 CGTAGGAGGTGGTGACCAGT 60.899 60.000 3.58 0.00 45.98 4.00
1461 1637 2.126850 GCGAGCAAGCCGAAAACC 60.127 61.111 7.03 0.00 0.00 3.27
1486 1662 1.796617 CGGACCATACGTCGGTTCTTC 60.797 57.143 10.67 0.00 42.99 2.87
1487 1663 1.542544 GACCATACGTCGGTTCTTCG 58.457 55.000 10.67 0.00 36.69 3.79
1516 1737 0.942410 CGACGAAGAAGAAACGCCCA 60.942 55.000 0.00 0.00 0.00 5.36
1663 1884 0.250513 GTGCTTGGGTACAGAGGAGG 59.749 60.000 0.00 0.00 0.00 4.30
1804 2028 4.230314 GCAGTCTGCTGATCGACTATAA 57.770 45.455 17.89 0.00 45.28 0.98
1809 2033 5.772672 AGTCTGCTGATCGACTATAAGGATT 59.227 40.000 0.00 0.00 38.63 3.01
1810 2034 6.943146 AGTCTGCTGATCGACTATAAGGATTA 59.057 38.462 0.00 0.00 38.63 1.75
1812 2036 7.753132 GTCTGCTGATCGACTATAAGGATTAAG 59.247 40.741 0.00 0.00 32.17 1.85
1813 2037 6.390721 TGCTGATCGACTATAAGGATTAAGC 58.609 40.000 0.00 0.00 32.17 3.09
1814 2038 6.015434 TGCTGATCGACTATAAGGATTAAGCA 60.015 38.462 0.00 0.00 37.60 3.91
1815 2039 6.868864 GCTGATCGACTATAAGGATTAAGCAA 59.131 38.462 0.00 0.00 32.17 3.91
1816 2040 7.062839 GCTGATCGACTATAAGGATTAAGCAAG 59.937 40.741 0.00 0.00 32.17 4.01
1817 2041 7.952671 TGATCGACTATAAGGATTAAGCAAGT 58.047 34.615 0.00 0.00 32.17 3.16
1818 2042 7.867909 TGATCGACTATAAGGATTAAGCAAGTG 59.132 37.037 0.00 0.00 32.17 3.16
1819 2043 5.983720 TCGACTATAAGGATTAAGCAAGTGC 59.016 40.000 0.00 0.00 32.17 4.40
1887 2112 4.857679 ACTAAGGAGTACTCAGTAGGGTG 58.142 47.826 23.91 7.99 32.65 4.61
1910 2135 8.180267 GGTGTCACTATCCATGTACGTATATAC 58.820 40.741 4.36 2.53 0.00 1.47
1911 2136 8.944029 GTGTCACTATCCATGTACGTATATACT 58.056 37.037 11.05 1.45 0.00 2.12
1913 2138 8.610896 GTCACTATCCATGTACGTATATACTCC 58.389 40.741 11.05 0.00 0.00 3.85
1914 2139 8.323567 TCACTATCCATGTACGTATATACTCCA 58.676 37.037 11.05 5.15 0.00 3.86
1915 2140 8.613482 CACTATCCATGTACGTATATACTCCAG 58.387 40.741 11.05 2.48 0.00 3.86
1917 2142 9.828039 CTATCCATGTACGTATATACTCCAGTA 57.172 37.037 11.05 3.29 34.67 2.74
1962 2187 4.069232 CGTGGGCAGCGAGAGGAA 62.069 66.667 0.00 0.00 0.00 3.36
1969 2196 1.168714 GCAGCGAGAGGAAAATGGTT 58.831 50.000 0.00 0.00 0.00 3.67
1990 2217 9.682465 ATGGTTTTCTTTATTTACTACTCCCTC 57.318 33.333 0.00 0.00 0.00 4.30
1991 2218 8.105197 TGGTTTTCTTTATTTACTACTCCCTCC 58.895 37.037 0.00 0.00 0.00 4.30
1992 2219 7.279536 GGTTTTCTTTATTTACTACTCCCTCCG 59.720 40.741 0.00 0.00 0.00 4.63
1993 2220 7.486407 TTTCTTTATTTACTACTCCCTCCGT 57.514 36.000 0.00 0.00 0.00 4.69
1994 2221 7.486407 TTCTTTATTTACTACTCCCTCCGTT 57.514 36.000 0.00 0.00 0.00 4.44
1995 2222 7.105241 TCTTTATTTACTACTCCCTCCGTTC 57.895 40.000 0.00 0.00 0.00 3.95
1996 2223 5.859205 TTATTTACTACTCCCTCCGTTCC 57.141 43.478 0.00 0.00 0.00 3.62
1997 2224 1.755179 TTACTACTCCCTCCGTTCCG 58.245 55.000 0.00 0.00 0.00 4.30
1998 2225 0.911769 TACTACTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
1999 2226 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
2000 2227 1.341778 ACTACTCCCTCCGTTCCGAAT 60.342 52.381 0.00 0.00 0.00 3.34
2001 2228 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
2002 2229 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
2003 2230 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
2004 2231 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
2005 2232 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
2006 2233 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2007 2234 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2008 2235 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2009 2236 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
2010 2237 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
2011 2238 3.991773 TCCGTTCCGAATTACTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
2012 2239 3.124636 CCGTTCCGAATTACTTGTCTTGG 59.875 47.826 0.00 0.00 0.00 3.61
2013 2240 3.991773 CGTTCCGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
2014 2241 4.630069 CGTTCCGAATTACTTGTCTTGGAT 59.370 41.667 0.00 0.00 0.00 3.41
2015 2242 5.121768 CGTTCCGAATTACTTGTCTTGGATT 59.878 40.000 0.00 0.00 0.00 3.01
2016 2243 6.348213 CGTTCCGAATTACTTGTCTTGGATTT 60.348 38.462 0.00 0.00 0.00 2.17
2017 2244 6.494893 TCCGAATTACTTGTCTTGGATTTG 57.505 37.500 0.00 0.00 0.00 2.32
2018 2245 6.001460 TCCGAATTACTTGTCTTGGATTTGT 58.999 36.000 0.00 0.00 0.00 2.83
2019 2246 6.148811 TCCGAATTACTTGTCTTGGATTTGTC 59.851 38.462 0.00 0.00 0.00 3.18
2020 2247 6.149474 CCGAATTACTTGTCTTGGATTTGTCT 59.851 38.462 0.00 0.00 0.00 3.41
2021 2248 7.333423 CCGAATTACTTGTCTTGGATTTGTCTA 59.667 37.037 0.00 0.00 0.00 2.59
2022 2249 8.383619 CGAATTACTTGTCTTGGATTTGTCTAG 58.616 37.037 0.00 0.00 0.00 2.43
2023 2250 9.436957 GAATTACTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
2024 2251 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
2026 2253 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
2027 2254 7.036220 ACTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
2028 2255 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
2029 2256 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
2030 2257 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
2031 2258 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
2032 2259 6.323996 TCTTGGATTTGTCTAGATACGGATGT 59.676 38.462 0.00 0.00 0.00 3.06
2033 2260 7.504574 TCTTGGATTTGTCTAGATACGGATGTA 59.495 37.037 0.00 0.00 34.45 2.29
2034 2261 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
2050 2277 8.466617 ACGGATGTATCTAGACTCATTTTAGT 57.533 34.615 11.25 7.70 0.00 2.24
2051 2278 9.570468 ACGGATGTATCTAGACTCATTTTAGTA 57.430 33.333 11.25 0.00 0.00 1.82
2052 2279 9.828852 CGGATGTATCTAGACTCATTTTAGTAC 57.171 37.037 11.25 0.88 0.00 2.73
2060 2287 9.628500 TCTAGACTCATTTTAGTACTAGATGCA 57.372 33.333 17.25 0.00 34.69 3.96
2063 2290 8.364142 AGACTCATTTTAGTACTAGATGCATCC 58.636 37.037 23.06 7.42 0.00 3.51
2064 2291 7.148641 ACTCATTTTAGTACTAGATGCATCCG 58.851 38.462 23.06 16.38 0.00 4.18
2065 2292 7.050970 TCATTTTAGTACTAGATGCATCCGT 57.949 36.000 23.06 20.89 0.00 4.69
2066 2293 8.173542 TCATTTTAGTACTAGATGCATCCGTA 57.826 34.615 23.06 19.92 0.00 4.02
2067 2294 8.803235 TCATTTTAGTACTAGATGCATCCGTAT 58.197 33.333 23.06 14.88 0.00 3.06
2068 2295 9.077674 CATTTTAGTACTAGATGCATCCGTATC 57.922 37.037 23.06 16.40 34.68 2.24
2069 2296 7.997773 TTTAGTACTAGATGCATCCGTATCT 57.002 36.000 23.06 20.89 45.39 1.98
2070 2297 9.511272 TTTTAGTACTAGATGCATCCGTATCTA 57.489 33.333 23.06 20.13 42.15 1.98
2076 2303 5.791336 AGATGCATCCGTATCTAGACAAA 57.209 39.130 23.06 0.00 42.15 2.83
2077 2304 6.352016 AGATGCATCCGTATCTAGACAAAT 57.648 37.500 23.06 0.00 42.15 2.32
2078 2305 6.393990 AGATGCATCCGTATCTAGACAAATC 58.606 40.000 23.06 0.00 42.15 2.17
2079 2306 5.791336 TGCATCCGTATCTAGACAAATCT 57.209 39.130 0.00 0.00 39.15 2.40
2080 2307 6.894339 TGCATCCGTATCTAGACAAATCTA 57.106 37.500 0.00 0.00 36.29 1.98
2081 2308 7.284919 TGCATCCGTATCTAGACAAATCTAA 57.715 36.000 0.00 0.00 36.98 2.10
2082 2309 7.371159 TGCATCCGTATCTAGACAAATCTAAG 58.629 38.462 0.00 0.00 36.98 2.18
2083 2310 7.230712 TGCATCCGTATCTAGACAAATCTAAGA 59.769 37.037 0.00 0.00 36.98 2.10
2084 2311 7.539366 GCATCCGTATCTAGACAAATCTAAGAC 59.461 40.741 0.00 0.00 36.98 3.01
2085 2312 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
2086 2313 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
2087 2314 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
2088 2315 8.407064 CCGTATCTAGACAAATCTAAGACAAGT 58.593 37.037 0.00 0.00 36.98 3.16
2096 2323 9.793259 AGACAAATCTAAGACAAGTAATTTGGA 57.207 29.630 9.60 0.00 38.04 3.53
2099 2326 9.329913 CAAATCTAAGACAAGTAATTTGGAACG 57.670 33.333 0.00 0.00 41.25 3.95
2100 2327 7.611213 ATCTAAGACAAGTAATTTGGAACGG 57.389 36.000 0.00 0.00 41.25 4.44
2101 2328 6.761312 TCTAAGACAAGTAATTTGGAACGGA 58.239 36.000 0.00 0.00 41.25 4.69
2102 2329 5.941948 AAGACAAGTAATTTGGAACGGAG 57.058 39.130 0.00 0.00 41.25 4.63
2103 2330 4.324267 AGACAAGTAATTTGGAACGGAGG 58.676 43.478 0.00 0.00 41.25 4.30
2104 2331 3.418047 ACAAGTAATTTGGAACGGAGGG 58.582 45.455 0.00 0.00 41.25 4.30
2105 2332 3.073356 ACAAGTAATTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 41.25 4.20
2106 2333 3.629142 AGTAATTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
2107 2334 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2108 2335 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
2164 2391 8.731275 TTGCACTTTAGCTATACACATGTAAT 57.269 30.769 0.00 0.00 32.87 1.89
2210 2441 4.651778 TCAATTCCTTGACCGTTGATTCT 58.348 39.130 0.00 0.00 36.46 2.40
2211 2442 5.070001 TCAATTCCTTGACCGTTGATTCTT 58.930 37.500 0.00 0.00 36.46 2.52
2212 2443 5.534654 TCAATTCCTTGACCGTTGATTCTTT 59.465 36.000 0.00 0.00 36.46 2.52
2213 2444 6.040391 TCAATTCCTTGACCGTTGATTCTTTT 59.960 34.615 0.00 0.00 36.46 2.27
2214 2445 5.845391 TTCCTTGACCGTTGATTCTTTTT 57.155 34.783 0.00 0.00 0.00 1.94
2233 2464 4.864704 TTTTATTGAGCAACCCTTGACC 57.135 40.909 0.00 0.00 0.00 4.02
2234 2465 2.107950 TATTGAGCAACCCTTGACCG 57.892 50.000 0.00 0.00 0.00 4.79
2235 2466 0.110486 ATTGAGCAACCCTTGACCGT 59.890 50.000 0.00 0.00 0.00 4.83
2236 2467 0.106918 TTGAGCAACCCTTGACCGTT 60.107 50.000 0.00 0.00 0.00 4.44
2237 2468 0.817634 TGAGCAACCCTTGACCGTTG 60.818 55.000 0.00 0.00 41.84 4.10
2238 2469 0.534203 GAGCAACCCTTGACCGTTGA 60.534 55.000 4.21 0.00 41.53 3.18
2250 2481 2.224281 TGACCGTTGATTCTTGCTCTGT 60.224 45.455 0.00 0.00 0.00 3.41
2251 2482 2.146342 ACCGTTGATTCTTGCTCTGTG 58.854 47.619 0.00 0.00 0.00 3.66
2256 2487 4.391216 CGTTGATTCTTGCTCTGTGATTCT 59.609 41.667 0.00 0.00 0.00 2.40
2259 2490 5.311265 TGATTCTTGCTCTGTGATTCTTGT 58.689 37.500 0.00 0.00 0.00 3.16
2260 2491 5.180680 TGATTCTTGCTCTGTGATTCTTGTG 59.819 40.000 0.00 0.00 0.00 3.33
2261 2492 2.810274 TCTTGCTCTGTGATTCTTGTGC 59.190 45.455 0.00 0.00 0.00 4.57
2264 2495 3.216800 TGCTCTGTGATTCTTGTGCTTT 58.783 40.909 0.00 0.00 0.00 3.51
2265 2496 3.633525 TGCTCTGTGATTCTTGTGCTTTT 59.366 39.130 0.00 0.00 0.00 2.27
2266 2497 4.098349 TGCTCTGTGATTCTTGTGCTTTTT 59.902 37.500 0.00 0.00 0.00 1.94
2285 2516 2.961522 TTTCGGATTGTTCAACGAGC 57.038 45.000 0.00 0.00 36.65 5.03
2286 2517 2.163818 TTCGGATTGTTCAACGAGCT 57.836 45.000 0.00 0.00 36.65 4.09
2287 2518 2.163818 TCGGATTGTTCAACGAGCTT 57.836 45.000 0.00 0.00 0.00 3.74
2288 2519 2.489971 TCGGATTGTTCAACGAGCTTT 58.510 42.857 0.00 0.00 0.00 3.51
2323 2554 9.914131 GGTTTTGATTTTTCTATGAGCTAGTTT 57.086 29.630 0.00 0.00 0.00 2.66
2356 2590 1.143305 CTGAGCAGTCAGTCGGTTTG 58.857 55.000 0.00 0.00 44.72 2.93
2357 2591 0.464036 TGAGCAGTCAGTCGGTTTGT 59.536 50.000 0.00 0.00 0.00 2.83
2367 2601 3.008157 TCAGTCGGTTTGTTATTGGGCTA 59.992 43.478 0.00 0.00 0.00 3.93
2368 2602 3.754323 CAGTCGGTTTGTTATTGGGCTAA 59.246 43.478 0.00 0.00 0.00 3.09
2387 2621 5.169295 GCTAAGAGCCCATTACTTATACCG 58.831 45.833 0.00 0.00 34.48 4.02
2388 2622 5.279356 GCTAAGAGCCCATTACTTATACCGT 60.279 44.000 0.00 0.00 34.48 4.83
2411 2646 3.102204 CAGCCCATCCATCTTTTCCTTT 58.898 45.455 0.00 0.00 0.00 3.11
2412 2647 3.102204 AGCCCATCCATCTTTTCCTTTG 58.898 45.455 0.00 0.00 0.00 2.77
2424 2659 8.992073 CCATCTTTTCCTTTGTTTTTATTCTGG 58.008 33.333 0.00 0.00 0.00 3.86
2430 2665 9.952030 TTTCCTTTGTTTTTATTCTGGTTTTCT 57.048 25.926 0.00 0.00 0.00 2.52
2432 2667 7.984617 TCCTTTGTTTTTATTCTGGTTTTCTGG 59.015 33.333 0.00 0.00 0.00 3.86
2436 2671 9.508642 TTGTTTTTATTCTGGTTTTCTGGTTTT 57.491 25.926 0.00 0.00 0.00 2.43
2448 3161 6.423905 GGTTTTCTGGTTTTATGCTTTTCTCC 59.576 38.462 0.00 0.00 0.00 3.71
2464 3177 8.700973 TGCTTTTCTCCTTTTATTAGTTGGTTT 58.299 29.630 0.00 0.00 0.00 3.27
2465 3178 9.542462 GCTTTTCTCCTTTTATTAGTTGGTTTT 57.458 29.630 0.00 0.00 0.00 2.43
2602 3365 4.829064 AAGTGCGATTTTAGTGCAAAGA 57.171 36.364 0.00 0.00 40.83 2.52
2603 3366 5.376854 AAGTGCGATTTTAGTGCAAAGAT 57.623 34.783 0.00 0.00 40.83 2.40
2604 3367 4.726416 AGTGCGATTTTAGTGCAAAGATG 58.274 39.130 0.00 0.00 40.83 2.90
2605 3368 4.216257 AGTGCGATTTTAGTGCAAAGATGT 59.784 37.500 0.00 0.00 40.83 3.06
2606 3369 4.321745 GTGCGATTTTAGTGCAAAGATGTG 59.678 41.667 0.00 0.00 40.83 3.21
2607 3370 4.023279 TGCGATTTTAGTGCAAAGATGTGT 60.023 37.500 0.00 0.00 35.33 3.72
2608 3371 4.321745 GCGATTTTAGTGCAAAGATGTGTG 59.678 41.667 0.00 0.00 0.00 3.82
2609 3372 4.321745 CGATTTTAGTGCAAAGATGTGTGC 59.678 41.667 0.00 0.00 41.29 4.57
2756 3519 8.319143 TCTTCTTTTAAGTGTAGTACCAATGC 57.681 34.615 0.00 0.00 0.00 3.56
2757 3520 7.389607 TCTTCTTTTAAGTGTAGTACCAATGCC 59.610 37.037 0.00 0.00 0.00 4.40
2758 3521 6.535540 TCTTTTAAGTGTAGTACCAATGCCA 58.464 36.000 0.00 0.00 0.00 4.92
2759 3522 6.999272 TCTTTTAAGTGTAGTACCAATGCCAA 59.001 34.615 0.00 0.00 0.00 4.52
2760 3523 7.668052 TCTTTTAAGTGTAGTACCAATGCCAAT 59.332 33.333 0.00 0.00 0.00 3.16
2761 3524 7.768807 TTTAAGTGTAGTACCAATGCCAATT 57.231 32.000 0.00 0.00 0.00 2.32
2762 3525 8.865420 TTTAAGTGTAGTACCAATGCCAATTA 57.135 30.769 0.00 0.00 0.00 1.40
2763 3526 9.469097 TTTAAGTGTAGTACCAATGCCAATTAT 57.531 29.630 0.00 0.00 0.00 1.28
2764 3527 7.954666 AAGTGTAGTACCAATGCCAATTATT 57.045 32.000 0.00 0.00 0.00 1.40
2765 3528 7.568199 AGTGTAGTACCAATGCCAATTATTC 57.432 36.000 0.00 0.00 0.00 1.75
2766 3529 7.116075 AGTGTAGTACCAATGCCAATTATTCA 58.884 34.615 0.00 0.00 0.00 2.57
2767 3530 7.779798 AGTGTAGTACCAATGCCAATTATTCAT 59.220 33.333 0.00 0.00 0.00 2.57
2768 3531 8.076178 GTGTAGTACCAATGCCAATTATTCATC 58.924 37.037 0.00 0.00 0.00 2.92
2769 3532 6.655078 AGTACCAATGCCAATTATTCATCC 57.345 37.500 0.00 0.00 0.00 3.51
2770 3533 4.961438 ACCAATGCCAATTATTCATCCC 57.039 40.909 0.00 0.00 0.00 3.85
2771 3534 4.559726 ACCAATGCCAATTATTCATCCCT 58.440 39.130 0.00 0.00 0.00 4.20
2772 3535 4.970640 ACCAATGCCAATTATTCATCCCTT 59.029 37.500 0.00 0.00 0.00 3.95
2773 3536 5.070847 ACCAATGCCAATTATTCATCCCTTC 59.929 40.000 0.00 0.00 0.00 3.46
2774 3537 5.306160 CCAATGCCAATTATTCATCCCTTCT 59.694 40.000 0.00 0.00 0.00 2.85
2775 3538 6.183361 CCAATGCCAATTATTCATCCCTTCTT 60.183 38.462 0.00 0.00 0.00 2.52
2776 3539 7.015487 CCAATGCCAATTATTCATCCCTTCTTA 59.985 37.037 0.00 0.00 0.00 2.10
2777 3540 8.423349 CAATGCCAATTATTCATCCCTTCTTAA 58.577 33.333 0.00 0.00 0.00 1.85
2778 3541 8.731591 ATGCCAATTATTCATCCCTTCTTAAT 57.268 30.769 0.00 0.00 0.00 1.40
2779 3542 8.551682 TGCCAATTATTCATCCCTTCTTAATT 57.448 30.769 0.00 0.00 0.00 1.40
2780 3543 8.991275 TGCCAATTATTCATCCCTTCTTAATTT 58.009 29.630 0.00 0.00 0.00 1.82
2781 3544 9.836864 GCCAATTATTCATCCCTTCTTAATTTT 57.163 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.002250 TCATGAGGGAAGTGATCTTATGATC 57.998 40.000 10.87 10.87 46.89 2.92
1 2 7.395617 CATCATGAGGGAAGTGATCTTATGAT 58.604 38.462 0.09 0.00 36.03 2.45
2 3 6.743490 GCATCATGAGGGAAGTGATCTTATGA 60.743 42.308 9.76 0.00 32.11 2.15
3 4 5.411977 GCATCATGAGGGAAGTGATCTTATG 59.588 44.000 9.76 0.00 33.64 1.90
4 5 5.514484 GGCATCATGAGGGAAGTGATCTTAT 60.514 44.000 9.76 0.00 33.64 1.73
5 6 4.202398 GGCATCATGAGGGAAGTGATCTTA 60.202 45.833 9.76 0.00 33.64 2.10
6 7 3.434739 GGCATCATGAGGGAAGTGATCTT 60.435 47.826 9.76 0.00 36.51 2.40
7 8 2.106166 GGCATCATGAGGGAAGTGATCT 59.894 50.000 9.76 0.00 30.57 2.75
27 28 0.167470 CACATTGCGCAAGAGACAGG 59.833 55.000 28.62 8.39 43.02 4.00
28 29 0.167470 CCACATTGCGCAAGAGACAG 59.833 55.000 28.62 14.91 43.02 3.51
30 31 0.874390 TTCCACATTGCGCAAGAGAC 59.126 50.000 28.62 0.00 43.02 3.36
36 37 1.089112 CTCTCATTCCACATTGCGCA 58.911 50.000 5.66 5.66 0.00 6.09
37 38 1.089920 ACTCTCATTCCACATTGCGC 58.910 50.000 0.00 0.00 0.00 6.09
38 39 3.684305 TGTTACTCTCATTCCACATTGCG 59.316 43.478 0.00 0.00 0.00 4.85
46 47 2.496470 ACCCTCGTGTTACTCTCATTCC 59.504 50.000 0.00 0.00 0.00 3.01
60 61 2.280592 GTTGCGGAACACCCTCGT 60.281 61.111 15.52 0.00 31.78 4.18
61 62 1.841663 CTTGTTGCGGAACACCCTCG 61.842 60.000 22.84 5.07 41.92 4.63
62 63 0.534203 TCTTGTTGCGGAACACCCTC 60.534 55.000 22.84 0.00 41.92 4.30
89 90 1.463444 GTTTCACACTATGACCGTGGC 59.537 52.381 0.00 0.00 36.92 5.01
94 95 5.245531 TCCTTGATGTTTCACACTATGACC 58.754 41.667 0.00 0.00 36.92 4.02
100 101 3.244700 CCTCCTCCTTGATGTTTCACACT 60.245 47.826 0.00 0.00 0.00 3.55
104 105 1.988107 AGCCTCCTCCTTGATGTTTCA 59.012 47.619 0.00 0.00 0.00 2.69
130 131 7.750229 ATATTTTGCAACCGATGATACTCAT 57.250 32.000 0.00 0.00 40.34 2.90
133 134 7.701924 CACAAATATTTTGCAACCGATGATACT 59.298 33.333 0.00 0.00 0.00 2.12
138 139 7.573916 TTACACAAATATTTTGCAACCGATG 57.426 32.000 0.00 0.00 0.00 3.84
139 140 8.770438 AATTACACAAATATTTTGCAACCGAT 57.230 26.923 0.00 0.00 0.00 4.18
140 141 8.491152 CAAATTACACAAATATTTTGCAACCGA 58.509 29.630 0.00 0.00 0.00 4.69
144 145 9.823098 GCATCAAATTACACAAATATTTTGCAA 57.177 25.926 0.00 0.00 30.64 4.08
152 153 4.346970 CGCGGCATCAAATTACACAAATA 58.653 39.130 0.00 0.00 0.00 1.40
153 154 3.178267 CGCGGCATCAAATTACACAAAT 58.822 40.909 0.00 0.00 0.00 2.32
169 170 4.699522 AAAGGTCACTCCCGCGGC 62.700 66.667 22.85 4.27 36.75 6.53
174 175 5.133941 AGAAGAAAGAAAAAGGTCACTCCC 58.866 41.667 0.00 0.00 36.75 4.30
175 176 6.701145 AAGAAGAAAGAAAAAGGTCACTCC 57.299 37.500 0.00 0.00 0.00 3.85
201 202 1.008361 CGAACAAAGCCCGCAAATGG 61.008 55.000 0.00 0.00 0.00 3.16
202 203 0.039617 TCGAACAAAGCCCGCAAATG 60.040 50.000 0.00 0.00 0.00 2.32
203 204 0.671251 TTCGAACAAAGCCCGCAAAT 59.329 45.000 0.00 0.00 0.00 2.32
205 206 1.098712 AGTTCGAACAAAGCCCGCAA 61.099 50.000 28.78 0.00 0.00 4.85
208 209 0.602905 AGGAGTTCGAACAAAGCCCG 60.603 55.000 28.78 0.00 0.00 6.13
216 217 8.818141 TCATTGATTATGATAGGAGTTCGAAC 57.182 34.615 20.71 20.71 38.35 3.95
225 226 8.582437 ACTTGCCATTTCATTGATTATGATAGG 58.418 33.333 9.61 0.00 42.69 2.57
231 232 9.158233 CAAAAGACTTGCCATTTCATTGATTAT 57.842 29.630 0.00 0.00 0.00 1.28
254 255 5.850557 TTCTTCTTCTGAAATGTGGCAAA 57.149 34.783 0.00 0.00 0.00 3.68
276 277 0.040425 GTGAGCGTCACGGCATTTTT 60.040 50.000 0.00 0.00 37.67 1.94
296 301 7.010183 CCTTGTTTCATCTTTGATGATCAATGC 59.990 37.037 8.90 0.00 36.11 3.56
300 305 5.419788 CCCCTTGTTTCATCTTTGATGATCA 59.580 40.000 10.52 0.00 0.00 2.92
301 306 5.653769 TCCCCTTGTTTCATCTTTGATGATC 59.346 40.000 10.52 8.13 0.00 2.92
302 307 5.582953 TCCCCTTGTTTCATCTTTGATGAT 58.417 37.500 10.52 0.00 0.00 2.45
303 308 4.996793 TCCCCTTGTTTCATCTTTGATGA 58.003 39.130 6.19 6.19 0.00 2.92
304 309 5.927281 ATCCCCTTGTTTCATCTTTGATG 57.073 39.130 1.45 1.45 0.00 3.07
323 328 2.957402 TGGCACCAATCCAGATATCC 57.043 50.000 0.00 0.00 0.00 2.59
325 330 4.458256 TGAATGGCACCAATCCAGATAT 57.542 40.909 2.33 0.00 36.98 1.63
349 354 1.515952 GTTAATTGCATGCGCGCCA 60.516 52.632 30.77 17.20 42.97 5.69
360 365 6.824305 AGACTCATTGGGTTCAGTTAATTG 57.176 37.500 0.00 0.00 0.00 2.32
362 367 6.542821 TCAAGACTCATTGGGTTCAGTTAAT 58.457 36.000 0.00 0.00 0.00 1.40
363 368 5.935945 TCAAGACTCATTGGGTTCAGTTAA 58.064 37.500 0.00 0.00 0.00 2.01
364 369 5.071788 ACTCAAGACTCATTGGGTTCAGTTA 59.928 40.000 0.00 0.00 41.10 2.24
366 371 3.392616 ACTCAAGACTCATTGGGTTCAGT 59.607 43.478 0.00 0.00 41.10 3.41
367 372 4.013267 ACTCAAGACTCATTGGGTTCAG 57.987 45.455 0.00 0.00 41.10 3.02
373 378 5.284079 CCACAAAAACTCAAGACTCATTGG 58.716 41.667 0.00 0.00 0.00 3.16
392 397 1.529010 CAACAGGAGCAAGCCCACA 60.529 57.895 0.00 0.00 0.00 4.17
402 407 1.239968 GGCCAACTCTGCAACAGGAG 61.240 60.000 0.00 0.00 31.51 3.69
403 408 1.228245 GGCCAACTCTGCAACAGGA 60.228 57.895 0.00 0.00 31.51 3.86
409 414 3.202906 GAATTATACGGCCAACTCTGCA 58.797 45.455 2.24 0.00 0.00 4.41
411 416 4.693283 TCTGAATTATACGGCCAACTCTG 58.307 43.478 2.24 0.00 0.00 3.35
412 417 4.406003 ACTCTGAATTATACGGCCAACTCT 59.594 41.667 2.24 0.00 0.00 3.24
414 419 4.755266 ACTCTGAATTATACGGCCAACT 57.245 40.909 2.24 0.00 0.00 3.16
416 421 7.332557 TCTTTTACTCTGAATTATACGGCCAA 58.667 34.615 2.24 0.00 0.00 4.52
436 442 2.837498 GCACCTGGCACAATTTCTTTT 58.163 42.857 0.00 0.00 43.97 2.27
536 558 3.867226 GAAACAACCGCGGCCGTTC 62.867 63.158 28.58 19.37 0.00 3.95
555 577 0.698818 AAACGGAAGCCCCTGATTCT 59.301 50.000 0.00 0.00 37.08 2.40
597 636 1.068083 ACCCATGCTACATCTCGCG 59.932 57.895 0.00 0.00 0.00 5.87
607 646 0.773644 AACTGAACTCCACCCATGCT 59.226 50.000 0.00 0.00 0.00 3.79
625 667 3.179048 CGTACGTGATGCTTCATGAGAA 58.821 45.455 24.24 9.54 40.70 2.87
684 744 2.347731 GTAAAAAGAGCTCTCGGGTGG 58.652 52.381 18.55 0.00 34.09 4.61
685 745 2.347731 GGTAAAAAGAGCTCTCGGGTG 58.652 52.381 18.55 0.00 34.09 4.61
686 746 1.278413 GGGTAAAAAGAGCTCTCGGGT 59.722 52.381 18.55 5.57 34.09 5.28
687 747 1.555533 AGGGTAAAAAGAGCTCTCGGG 59.444 52.381 18.55 0.00 34.09 5.14
688 748 3.700038 TCTAGGGTAAAAAGAGCTCTCGG 59.300 47.826 18.55 1.88 34.09 4.63
689 749 4.985538 TCTAGGGTAAAAAGAGCTCTCG 57.014 45.455 18.55 0.00 34.09 4.04
690 750 5.875910 GGTTTCTAGGGTAAAAAGAGCTCTC 59.124 44.000 18.55 3.48 0.00 3.20
691 751 5.569026 CGGTTTCTAGGGTAAAAAGAGCTCT 60.569 44.000 11.45 11.45 0.00 4.09
692 752 4.630505 CGGTTTCTAGGGTAAAAAGAGCTC 59.369 45.833 5.27 5.27 0.00 4.09
693 753 4.576879 CGGTTTCTAGGGTAAAAAGAGCT 58.423 43.478 0.00 0.00 0.00 4.09
719 779 2.268076 GCGTGGTGAATGGCAAGGT 61.268 57.895 0.00 0.00 0.00 3.50
771 857 0.179108 GCACCGCTACTCCTACTTGG 60.179 60.000 0.00 0.00 37.10 3.61
814 900 1.400500 CGTGGTGGGTTTAACGATTGC 60.400 52.381 0.00 0.00 38.27 3.56
820 906 1.570967 GTCGCGTGGTGGGTTTAAC 59.429 57.895 5.77 0.00 0.00 2.01
849 935 1.433053 CCGAGCGTGGTTGTGTTTCA 61.433 55.000 0.00 0.00 0.00 2.69
927 1019 3.629858 GGCTTGTCAAATGCCGATC 57.370 52.632 0.43 0.00 37.11 3.69
954 1046 2.501723 CCCTGAGCTAGCTAAGAAACCA 59.498 50.000 28.28 14.27 0.00 3.67
955 1047 2.502130 ACCCTGAGCTAGCTAAGAAACC 59.498 50.000 28.28 10.30 0.00 3.27
982 1113 1.888512 CATGCCACTGCCAAACTACTT 59.111 47.619 0.00 0.00 36.33 2.24
1222 1386 4.988486 GTCGTGGCCGTCGTCGTT 62.988 66.667 17.32 0.00 35.01 3.85
1232 1396 2.432628 CGGAGAGGTTGTCGTGGC 60.433 66.667 0.00 0.00 0.00 5.01
1337 1507 1.226888 GATATATCGACCGGCGCCC 60.227 63.158 23.46 5.88 40.61 6.13
1362 1532 0.100682 CACCACCTCCTACGATGACG 59.899 60.000 0.00 0.00 45.75 4.35
1366 1536 0.040646 TGGTCACCACCTCCTACGAT 59.959 55.000 0.00 0.00 44.17 3.73
1461 1637 1.581912 CGACGTATGGTCCGTGTCG 60.582 63.158 8.97 8.97 45.06 4.35
1486 1662 0.451628 TCTTCGTCGTCACGCTTACG 60.452 55.000 3.66 3.66 46.28 3.18
1487 1663 1.642843 CTTCTTCGTCGTCACGCTTAC 59.357 52.381 0.00 0.00 46.28 2.34
1500 1721 1.334689 GGTTTGGGCGTTTCTTCTTCG 60.335 52.381 0.00 0.00 0.00 3.79
1510 1731 1.964373 CGCTAACTGGTTTGGGCGT 60.964 57.895 14.53 0.00 38.20 5.68
1516 1737 1.336755 CTTGTTGGCGCTAACTGGTTT 59.663 47.619 32.31 0.00 0.00 3.27
1581 1802 4.081642 TCAGGTGTTACTGTAATCTGAGCC 60.082 45.833 18.39 9.91 39.48 4.70
1649 1870 2.363795 CGGCCTCCTCTGTACCCA 60.364 66.667 0.00 0.00 0.00 4.51
1652 1873 0.173708 CTTGTCGGCCTCCTCTGTAC 59.826 60.000 0.00 0.00 0.00 2.90
1768 1992 2.047844 TGCTGCTTCCTGCTCGAC 60.048 61.111 0.00 0.00 43.37 4.20
1821 2045 8.885722 GCTAATCAAGTCGCTAGTATATCTACT 58.114 37.037 0.00 0.00 41.19 2.57
1822 2046 8.885722 AGCTAATCAAGTCGCTAGTATATCTAC 58.114 37.037 0.00 0.00 0.00 2.59
1824 2048 7.931578 AGCTAATCAAGTCGCTAGTATATCT 57.068 36.000 0.00 0.00 0.00 1.98
1825 2049 8.124199 GGTAGCTAATCAAGTCGCTAGTATATC 58.876 40.741 0.00 0.00 35.83 1.63
1826 2050 7.830201 AGGTAGCTAATCAAGTCGCTAGTATAT 59.170 37.037 0.00 0.00 35.83 0.86
1827 2051 7.166851 AGGTAGCTAATCAAGTCGCTAGTATA 58.833 38.462 0.00 0.00 35.83 1.47
1828 2052 6.005198 AGGTAGCTAATCAAGTCGCTAGTAT 58.995 40.000 0.00 0.00 35.83 2.12
1829 2053 5.374921 AGGTAGCTAATCAAGTCGCTAGTA 58.625 41.667 0.00 0.00 35.83 1.82
1884 2109 3.795623 ACGTACATGGATAGTGACACC 57.204 47.619 0.84 0.00 0.00 4.16
1887 2112 8.610896 GGAGTATATACGTACATGGATAGTGAC 58.389 40.741 7.23 0.00 0.00 3.67
1910 2135 6.741992 TTTGTACAAAGCATCATACTGGAG 57.258 37.500 17.01 0.00 0.00 3.86
1911 2136 7.701539 AATTTGTACAAAGCATCATACTGGA 57.298 32.000 24.22 0.00 33.32 3.86
1917 2142 7.010367 CCGCATAAAATTTGTACAAAGCATCAT 59.990 33.333 24.22 11.78 33.32 2.45
1918 2143 6.309980 CCGCATAAAATTTGTACAAAGCATCA 59.690 34.615 24.22 10.19 33.32 3.07
1969 2196 7.486407 ACGGAGGGAGTAGTAAATAAAGAAA 57.514 36.000 0.00 0.00 0.00 2.52
1992 2219 6.496338 AATCCAAGACAAGTAATTCGGAAC 57.504 37.500 0.00 0.00 0.00 3.62
1993 2220 6.488683 ACAAATCCAAGACAAGTAATTCGGAA 59.511 34.615 0.00 0.00 0.00 4.30
1994 2221 6.001460 ACAAATCCAAGACAAGTAATTCGGA 58.999 36.000 0.00 0.00 0.00 4.55
1995 2222 6.149474 AGACAAATCCAAGACAAGTAATTCGG 59.851 38.462 0.00 0.00 0.00 4.30
1996 2223 7.133891 AGACAAATCCAAGACAAGTAATTCG 57.866 36.000 0.00 0.00 0.00 3.34
1997 2224 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
1998 2225 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
2000 2227 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
2001 2228 8.188799 CGTATCTAGACAAATCCAAGACAAGTA 58.811 37.037 0.00 0.00 0.00 2.24
2002 2229 7.036220 CGTATCTAGACAAATCCAAGACAAGT 58.964 38.462 0.00 0.00 0.00 3.16
2003 2230 6.477033 CCGTATCTAGACAAATCCAAGACAAG 59.523 42.308 0.00 0.00 0.00 3.16
2004 2231 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
2005 2232 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
2006 2233 6.145338 TCCGTATCTAGACAAATCCAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
2007 2234 6.323996 ACATCCGTATCTAGACAAATCCAAGA 59.676 38.462 0.00 0.00 0.00 3.02
2008 2235 6.516718 ACATCCGTATCTAGACAAATCCAAG 58.483 40.000 0.00 0.00 0.00 3.61
2009 2236 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
2010 2237 7.776618 ATACATCCGTATCTAGACAAATCCA 57.223 36.000 0.00 0.00 32.66 3.41
2024 2251 9.570468 ACTAAAATGAGTCTAGATACATCCGTA 57.430 33.333 12.66 6.93 0.00 4.02
2025 2252 8.466617 ACTAAAATGAGTCTAGATACATCCGT 57.533 34.615 12.66 7.10 0.00 4.69
2026 2253 9.828852 GTACTAAAATGAGTCTAGATACATCCG 57.171 37.037 12.66 6.68 0.00 4.18
2034 2261 9.628500 TGCATCTAGTACTAAAATGAGTCTAGA 57.372 33.333 21.06 7.35 38.76 2.43
2037 2264 8.364142 GGATGCATCTAGTACTAAAATGAGTCT 58.636 37.037 25.28 8.04 0.00 3.24
2038 2265 7.327275 CGGATGCATCTAGTACTAAAATGAGTC 59.673 40.741 25.28 17.19 0.00 3.36
2039 2266 7.148641 CGGATGCATCTAGTACTAAAATGAGT 58.851 38.462 25.28 12.27 0.00 3.41
2040 2267 7.148641 ACGGATGCATCTAGTACTAAAATGAG 58.851 38.462 25.28 5.66 0.00 2.90
2041 2268 7.050970 ACGGATGCATCTAGTACTAAAATGA 57.949 36.000 25.28 9.63 0.00 2.57
2042 2269 8.988064 ATACGGATGCATCTAGTACTAAAATG 57.012 34.615 26.05 15.76 0.00 2.32
2043 2270 9.026121 AGATACGGATGCATCTAGTACTAAAAT 57.974 33.333 26.05 16.35 29.66 1.82
2044 2271 8.405418 AGATACGGATGCATCTAGTACTAAAA 57.595 34.615 26.05 13.44 29.66 1.52
2045 2272 7.997773 AGATACGGATGCATCTAGTACTAAA 57.002 36.000 26.05 13.96 29.66 1.85
2046 2273 8.537858 TCTAGATACGGATGCATCTAGTACTAA 58.462 37.037 26.05 17.27 45.78 2.24
2047 2274 7.980662 GTCTAGATACGGATGCATCTAGTACTA 59.019 40.741 26.05 24.20 45.78 1.82
2048 2275 6.819649 GTCTAGATACGGATGCATCTAGTACT 59.180 42.308 26.05 24.31 45.78 2.73
2049 2276 6.594547 TGTCTAGATACGGATGCATCTAGTAC 59.405 42.308 26.05 20.95 45.78 2.73
2050 2277 6.708285 TGTCTAGATACGGATGCATCTAGTA 58.292 40.000 25.28 25.63 45.78 1.82
2051 2278 5.561679 TGTCTAGATACGGATGCATCTAGT 58.438 41.667 25.28 24.53 45.78 2.57
2052 2279 6.502136 TTGTCTAGATACGGATGCATCTAG 57.498 41.667 25.28 20.66 46.48 2.43
2053 2280 6.894339 TTTGTCTAGATACGGATGCATCTA 57.106 37.500 25.28 12.00 33.58 1.98
2054 2281 5.791336 TTTGTCTAGATACGGATGCATCT 57.209 39.130 25.28 10.06 35.67 2.90
2055 2282 6.393990 AGATTTGTCTAGATACGGATGCATC 58.606 40.000 18.81 18.81 0.00 3.91
2056 2283 6.352016 AGATTTGTCTAGATACGGATGCAT 57.648 37.500 0.00 0.00 0.00 3.96
2057 2284 5.791336 AGATTTGTCTAGATACGGATGCA 57.209 39.130 0.00 0.00 0.00 3.96
2058 2285 7.539366 GTCTTAGATTTGTCTAGATACGGATGC 59.461 40.741 0.00 0.00 0.00 3.91
2059 2286 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
2060 2287 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
2061 2288 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
2062 2289 8.407064 ACTTGTCTTAGATTTGTCTAGATACGG 58.593 37.037 0.00 0.00 0.00 4.02
2070 2297 9.793259 TCCAAATTACTTGTCTTAGATTTGTCT 57.207 29.630 0.00 0.00 34.40 3.41
2073 2300 9.329913 CGTTCCAAATTACTTGTCTTAGATTTG 57.670 33.333 0.00 0.00 35.40 2.32
2074 2301 8.512138 CCGTTCCAAATTACTTGTCTTAGATTT 58.488 33.333 0.00 0.00 32.65 2.17
2075 2302 7.881232 TCCGTTCCAAATTACTTGTCTTAGATT 59.119 33.333 0.00 0.00 32.65 2.40
2076 2303 7.391620 TCCGTTCCAAATTACTTGTCTTAGAT 58.608 34.615 0.00 0.00 32.65 1.98
2077 2304 6.761312 TCCGTTCCAAATTACTTGTCTTAGA 58.239 36.000 0.00 0.00 32.65 2.10
2078 2305 6.092259 CCTCCGTTCCAAATTACTTGTCTTAG 59.908 42.308 0.00 0.00 32.65 2.18
2079 2306 5.935789 CCTCCGTTCCAAATTACTTGTCTTA 59.064 40.000 0.00 0.00 32.65 2.10
2080 2307 4.760204 CCTCCGTTCCAAATTACTTGTCTT 59.240 41.667 0.00 0.00 32.65 3.01
2081 2308 4.324267 CCTCCGTTCCAAATTACTTGTCT 58.676 43.478 0.00 0.00 32.65 3.41
2082 2309 3.439129 CCCTCCGTTCCAAATTACTTGTC 59.561 47.826 0.00 0.00 32.65 3.18
2083 2310 3.073356 TCCCTCCGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
2084 2311 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
2085 2312 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
2086 2313 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2087 2314 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2088 2315 4.355549 TCTACTCCCTCCGTTCCAAATTA 58.644 43.478 0.00 0.00 0.00 1.40
2089 2316 3.178865 TCTACTCCCTCCGTTCCAAATT 58.821 45.455 0.00 0.00 0.00 1.82
2090 2317 2.829023 TCTACTCCCTCCGTTCCAAAT 58.171 47.619 0.00 0.00 0.00 2.32
2091 2318 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
2092 2319 2.176889 CTTCTACTCCCTCCGTTCCAA 58.823 52.381 0.00 0.00 0.00 3.53
2093 2320 1.356738 TCTTCTACTCCCTCCGTTCCA 59.643 52.381 0.00 0.00 0.00 3.53
2094 2321 1.750206 GTCTTCTACTCCCTCCGTTCC 59.250 57.143 0.00 0.00 0.00 3.62
2095 2322 2.424246 CAGTCTTCTACTCCCTCCGTTC 59.576 54.545 0.00 0.00 35.76 3.95
2096 2323 2.041350 TCAGTCTTCTACTCCCTCCGTT 59.959 50.000 0.00 0.00 35.76 4.44
2097 2324 1.634459 TCAGTCTTCTACTCCCTCCGT 59.366 52.381 0.00 0.00 35.76 4.69
2098 2325 2.421751 TCAGTCTTCTACTCCCTCCG 57.578 55.000 0.00 0.00 35.76 4.63
2099 2326 3.118920 GCTTTCAGTCTTCTACTCCCTCC 60.119 52.174 0.00 0.00 35.76 4.30
2100 2327 3.428316 CGCTTTCAGTCTTCTACTCCCTC 60.428 52.174 0.00 0.00 35.76 4.30
2101 2328 2.494073 CGCTTTCAGTCTTCTACTCCCT 59.506 50.000 0.00 0.00 35.76 4.20
2102 2329 2.492484 TCGCTTTCAGTCTTCTACTCCC 59.508 50.000 0.00 0.00 35.76 4.30
2103 2330 3.057456 TGTCGCTTTCAGTCTTCTACTCC 60.057 47.826 0.00 0.00 35.76 3.85
2104 2331 3.915569 GTGTCGCTTTCAGTCTTCTACTC 59.084 47.826 0.00 0.00 35.76 2.59
2105 2332 3.318275 TGTGTCGCTTTCAGTCTTCTACT 59.682 43.478 0.00 0.00 39.81 2.57
2106 2333 3.639538 TGTGTCGCTTTCAGTCTTCTAC 58.360 45.455 0.00 0.00 0.00 2.59
2107 2334 4.237724 CATGTGTCGCTTTCAGTCTTCTA 58.762 43.478 0.00 0.00 0.00 2.10
2108 2335 2.890808 TGTGTCGCTTTCAGTCTTCT 57.109 45.000 0.00 0.00 0.00 2.85
2164 2391 5.602145 ACTGACCCAATTTCAAAATTCAGGA 59.398 36.000 15.68 0.86 36.52 3.86
2178 2409 4.082125 GTCAAGGAATTGACTGACCCAAT 58.918 43.478 12.64 0.00 45.77 3.16
2211 2442 4.261825 CGGTCAAGGGTTGCTCAATAAAAA 60.262 41.667 0.00 0.00 0.00 1.94
2212 2443 3.254657 CGGTCAAGGGTTGCTCAATAAAA 59.745 43.478 0.00 0.00 0.00 1.52
2213 2444 2.817258 CGGTCAAGGGTTGCTCAATAAA 59.183 45.455 0.00 0.00 0.00 1.40
2214 2445 2.224670 ACGGTCAAGGGTTGCTCAATAA 60.225 45.455 0.00 0.00 0.00 1.40
2215 2446 1.349688 ACGGTCAAGGGTTGCTCAATA 59.650 47.619 0.00 0.00 0.00 1.90
2216 2447 0.110486 ACGGTCAAGGGTTGCTCAAT 59.890 50.000 0.00 0.00 0.00 2.57
2217 2448 0.106918 AACGGTCAAGGGTTGCTCAA 60.107 50.000 0.00 0.00 0.00 3.02
2218 2449 0.817634 CAACGGTCAAGGGTTGCTCA 60.818 55.000 0.00 0.00 37.34 4.26
2219 2450 0.534203 TCAACGGTCAAGGGTTGCTC 60.534 55.000 0.00 0.00 42.42 4.26
2220 2451 0.110486 ATCAACGGTCAAGGGTTGCT 59.890 50.000 0.00 0.00 42.42 3.91
2221 2452 0.958822 AATCAACGGTCAAGGGTTGC 59.041 50.000 0.00 0.00 42.42 4.17
2222 2453 2.504367 AGAATCAACGGTCAAGGGTTG 58.496 47.619 0.00 0.00 43.69 3.77
2223 2454 2.884639 CAAGAATCAACGGTCAAGGGTT 59.115 45.455 0.00 0.00 0.00 4.11
2224 2455 2.504367 CAAGAATCAACGGTCAAGGGT 58.496 47.619 0.00 0.00 0.00 4.34
2225 2456 1.200020 GCAAGAATCAACGGTCAAGGG 59.800 52.381 0.00 0.00 0.00 3.95
2226 2457 2.154462 AGCAAGAATCAACGGTCAAGG 58.846 47.619 0.00 0.00 0.00 3.61
2227 2458 3.070018 AGAGCAAGAATCAACGGTCAAG 58.930 45.455 0.00 0.00 0.00 3.02
2228 2459 2.807967 CAGAGCAAGAATCAACGGTCAA 59.192 45.455 0.00 0.00 0.00 3.18
2229 2460 2.224281 ACAGAGCAAGAATCAACGGTCA 60.224 45.455 0.00 0.00 0.00 4.02
2230 2461 2.158449 CACAGAGCAAGAATCAACGGTC 59.842 50.000 0.00 0.00 0.00 4.79
2231 2462 2.146342 CACAGAGCAAGAATCAACGGT 58.854 47.619 0.00 0.00 0.00 4.83
2232 2463 2.416747 TCACAGAGCAAGAATCAACGG 58.583 47.619 0.00 0.00 0.00 4.44
2233 2464 4.391216 AGAATCACAGAGCAAGAATCAACG 59.609 41.667 0.00 0.00 0.00 4.10
2234 2465 5.876612 AGAATCACAGAGCAAGAATCAAC 57.123 39.130 0.00 0.00 0.00 3.18
2235 2466 5.766670 ACAAGAATCACAGAGCAAGAATCAA 59.233 36.000 0.00 0.00 0.00 2.57
2236 2467 5.180680 CACAAGAATCACAGAGCAAGAATCA 59.819 40.000 0.00 0.00 0.00 2.57
2237 2468 5.629097 CACAAGAATCACAGAGCAAGAATC 58.371 41.667 0.00 0.00 0.00 2.52
2238 2469 4.082895 GCACAAGAATCACAGAGCAAGAAT 60.083 41.667 0.00 0.00 0.00 2.40
2264 2495 3.314080 AGCTCGTTGAACAATCCGAAAAA 59.686 39.130 0.00 0.00 0.00 1.94
2265 2496 2.875933 AGCTCGTTGAACAATCCGAAAA 59.124 40.909 0.00 0.00 0.00 2.29
2266 2497 2.489971 AGCTCGTTGAACAATCCGAAA 58.510 42.857 0.00 0.00 0.00 3.46
2267 2498 2.163818 AGCTCGTTGAACAATCCGAA 57.836 45.000 0.00 0.00 0.00 4.30
2268 2499 2.163818 AAGCTCGTTGAACAATCCGA 57.836 45.000 0.00 0.00 0.00 4.55
2296 2527 8.870075 ACTAGCTCATAGAAAAATCAAAACCT 57.130 30.769 0.00 0.00 35.30 3.50
2297 2528 9.914131 AAACTAGCTCATAGAAAAATCAAAACC 57.086 29.630 0.00 0.00 35.30 3.27
2299 2530 9.912634 CCAAACTAGCTCATAGAAAAATCAAAA 57.087 29.630 0.00 0.00 35.30 2.44
2300 2531 8.522830 CCCAAACTAGCTCATAGAAAAATCAAA 58.477 33.333 0.00 0.00 35.30 2.69
2302 2533 6.095440 GCCCAAACTAGCTCATAGAAAAATCA 59.905 38.462 0.00 0.00 35.30 2.57
2305 2536 4.705023 GGCCCAAACTAGCTCATAGAAAAA 59.295 41.667 0.00 0.00 35.30 1.94
2307 2538 3.523564 AGGCCCAAACTAGCTCATAGAAA 59.476 43.478 0.00 0.00 35.30 2.52
2341 2575 3.364964 CCAATAACAAACCGACTGACTGC 60.365 47.826 0.00 0.00 0.00 4.40
2344 2578 2.095415 GCCCAATAACAAACCGACTGAC 60.095 50.000 0.00 0.00 0.00 3.51
2367 2601 4.040095 GGACGGTATAAGTAATGGGCTCTT 59.960 45.833 0.00 0.00 0.00 2.85
2368 2602 3.577415 GGACGGTATAAGTAATGGGCTCT 59.423 47.826 0.00 0.00 0.00 4.09
2380 2614 1.053424 GGATGGGCTGGACGGTATAA 58.947 55.000 0.00 0.00 0.00 0.98
2381 2615 0.105401 TGGATGGGCTGGACGGTATA 60.105 55.000 0.00 0.00 0.00 1.47
2387 2621 2.027385 GAAAAGATGGATGGGCTGGAC 58.973 52.381 0.00 0.00 0.00 4.02
2388 2622 1.063717 GGAAAAGATGGATGGGCTGGA 60.064 52.381 0.00 0.00 0.00 3.86
2424 2659 7.210174 AGGAGAAAAGCATAAAACCAGAAAAC 58.790 34.615 0.00 0.00 0.00 2.43
2429 2664 9.710900 AATAAAAGGAGAAAAGCATAAAACCAG 57.289 29.630 0.00 0.00 0.00 4.00
2436 2671 9.528489 ACCAACTAATAAAAGGAGAAAAGCATA 57.472 29.630 0.00 0.00 0.00 3.14
2467 3180 9.554395 CTCCCAAAAATACCTTTAAAACACAAT 57.446 29.630 0.00 0.00 0.00 2.71
2468 3181 8.541234 ACTCCCAAAAATACCTTTAAAACACAA 58.459 29.630 0.00 0.00 0.00 3.33
2469 3182 8.080363 ACTCCCAAAAATACCTTTAAAACACA 57.920 30.769 0.00 0.00 0.00 3.72
2470 3183 8.822855 CAACTCCCAAAAATACCTTTAAAACAC 58.177 33.333 0.00 0.00 0.00 3.32
2471 3184 7.988028 CCAACTCCCAAAAATACCTTTAAAACA 59.012 33.333 0.00 0.00 0.00 2.83
2472 3185 8.205512 TCCAACTCCCAAAAATACCTTTAAAAC 58.794 33.333 0.00 0.00 0.00 2.43
2473 3186 8.320338 TCCAACTCCCAAAAATACCTTTAAAA 57.680 30.769 0.00 0.00 0.00 1.52
2642 3405 9.729281 TTAGTTCTGTTGGTATTACCCTTTAAG 57.271 33.333 10.37 1.98 37.50 1.85
2730 3493 8.780249 GCATTGGTACTACACTTAAAAGAAGAA 58.220 33.333 0.00 0.00 0.00 2.52
2731 3494 7.389607 GGCATTGGTACTACACTTAAAAGAAGA 59.610 37.037 0.00 0.00 0.00 2.87
2732 3495 7.174253 TGGCATTGGTACTACACTTAAAAGAAG 59.826 37.037 0.00 0.00 0.00 2.85
2733 3496 6.999272 TGGCATTGGTACTACACTTAAAAGAA 59.001 34.615 0.00 0.00 0.00 2.52
2734 3497 6.535540 TGGCATTGGTACTACACTTAAAAGA 58.464 36.000 0.00 0.00 0.00 2.52
2735 3498 6.811253 TGGCATTGGTACTACACTTAAAAG 57.189 37.500 0.00 0.00 0.00 2.27
2736 3499 7.768807 ATTGGCATTGGTACTACACTTAAAA 57.231 32.000 0.00 0.00 0.00 1.52
2737 3500 7.768807 AATTGGCATTGGTACTACACTTAAA 57.231 32.000 0.00 0.00 0.00 1.52
2738 3501 9.469097 AATAATTGGCATTGGTACTACACTTAA 57.531 29.630 0.00 0.00 0.00 1.85
2739 3502 9.116067 GAATAATTGGCATTGGTACTACACTTA 57.884 33.333 0.00 0.00 0.00 2.24
2740 3503 7.613801 TGAATAATTGGCATTGGTACTACACTT 59.386 33.333 0.00 0.00 0.00 3.16
2741 3504 7.116075 TGAATAATTGGCATTGGTACTACACT 58.884 34.615 0.00 0.00 0.00 3.55
2742 3505 7.328277 TGAATAATTGGCATTGGTACTACAC 57.672 36.000 0.00 0.00 0.00 2.90
2743 3506 7.230510 GGATGAATAATTGGCATTGGTACTACA 59.769 37.037 0.00 0.00 0.00 2.74
2744 3507 7.309194 GGGATGAATAATTGGCATTGGTACTAC 60.309 40.741 0.00 0.00 0.00 2.73
2745 3508 6.719370 GGGATGAATAATTGGCATTGGTACTA 59.281 38.462 0.00 0.00 0.00 1.82
2746 3509 5.539955 GGGATGAATAATTGGCATTGGTACT 59.460 40.000 0.00 0.00 0.00 2.73
2747 3510 5.539955 AGGGATGAATAATTGGCATTGGTAC 59.460 40.000 0.00 0.00 0.00 3.34
2748 3511 5.714863 AGGGATGAATAATTGGCATTGGTA 58.285 37.500 0.00 0.00 0.00 3.25
2749 3512 4.559726 AGGGATGAATAATTGGCATTGGT 58.440 39.130 0.00 0.00 0.00 3.67
2750 3513 5.306160 AGAAGGGATGAATAATTGGCATTGG 59.694 40.000 0.00 0.00 0.00 3.16
2751 3514 6.415206 AGAAGGGATGAATAATTGGCATTG 57.585 37.500 0.00 0.00 0.00 2.82
2752 3515 8.551682 TTAAGAAGGGATGAATAATTGGCATT 57.448 30.769 0.00 0.00 0.00 3.56
2753 3516 8.731591 ATTAAGAAGGGATGAATAATTGGCAT 57.268 30.769 0.00 0.00 0.00 4.40
2754 3517 8.551682 AATTAAGAAGGGATGAATAATTGGCA 57.448 30.769 0.00 0.00 0.00 4.92
2755 3518 9.836864 AAAATTAAGAAGGGATGAATAATTGGC 57.163 29.630 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.