Multiple sequence alignment - TraesCS5B01G376100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G376100 chr5B 100.000 4323 0 0 1 4323 553943271 553947593 0.000000e+00 7984.0
1 TraesCS5B01G376100 chr5B 80.186 752 137 12 2410 3155 403534546 403535291 1.760000e-153 553.0
2 TraesCS5B01G376100 chr5B 96.284 296 11 0 1 296 375645052 375644757 1.810000e-133 486.0
3 TraesCS5B01G376100 chr5A 92.795 3359 133 54 293 3628 572699818 572696546 0.000000e+00 4761.0
4 TraesCS5B01G376100 chr5A 80.826 751 134 10 2410 3155 444088565 444089310 8.060000e-162 580.0
5 TraesCS5B01G376100 chr5A 89.189 74 8 0 3538 3611 506131246 506131319 4.600000e-15 93.5
6 TraesCS5B01G376100 chr5D 92.965 2047 70 42 321 2332 453412268 453414275 0.000000e+00 2915.0
7 TraesCS5B01G376100 chr5D 89.758 2021 128 33 2340 4303 453421778 453423776 0.000000e+00 2512.0
8 TraesCS5B01G376100 chr5D 79.708 754 137 16 2410 3155 343119543 343120288 8.230000e-147 531.0
9 TraesCS5B01G376100 chr1A 81.669 671 115 8 2410 3076 73093601 73092935 6.320000e-153 551.0
10 TraesCS5B01G376100 chr1A 87.671 73 9 0 4157 4229 149353897 149353969 7.700000e-13 86.1
11 TraesCS5B01G376100 chr1D 79.916 717 136 8 2410 3122 73316438 73315726 1.780000e-143 520.0
12 TraesCS5B01G376100 chr7B 96.633 297 9 1 1 296 192454235 192454531 3.880000e-135 492.0
13 TraesCS5B01G376100 chr7B 95.695 302 12 1 1 301 439997318 439997017 6.500000e-133 484.0
14 TraesCS5B01G376100 chr7B 85.714 182 19 7 3533 3711 212782507 212782330 7.380000e-43 185.0
15 TraesCS5B01G376100 chr4A 96.296 297 10 1 1 296 1078262 1077966 1.810000e-133 486.0
16 TraesCS5B01G376100 chr4B 96.271 295 10 1 1 294 133611257 133610963 2.340000e-132 483.0
17 TraesCS5B01G376100 chr6B 95.960 297 11 1 1 296 520868320 520868616 8.410000e-132 481.0
18 TraesCS5B01G376100 chr6B 95.638 298 11 1 1 296 586544848 586544551 1.090000e-130 477.0
19 TraesCS5B01G376100 chrUn 95.932 295 11 1 1 294 266373886 266374180 1.090000e-130 477.0
20 TraesCS5B01G376100 chr1B 95.638 298 12 1 1 297 62411979 62411682 1.090000e-130 477.0
21 TraesCS5B01G376100 chr6D 76.912 680 147 9 2436 3110 271086269 271085595 1.130000e-100 377.0
22 TraesCS5B01G376100 chr6A 76.946 681 145 11 2436 3110 384921559 384922233 1.130000e-100 377.0
23 TraesCS5B01G376100 chr6A 89.560 182 14 5 3533 3711 169514800 169514979 4.350000e-55 226.0
24 TraesCS5B01G376100 chr2B 84.946 186 21 2 3533 3711 693317385 693317200 9.550000e-42 182.0
25 TraesCS5B01G376100 chr2B 85.556 90 13 0 4165 4254 164656750 164656661 1.280000e-15 95.3
26 TraesCS5B01G376100 chr2B 91.489 47 4 0 3533 3579 332335977 332335931 1.000000e-06 65.8
27 TraesCS5B01G376100 chr2D 83.505 97 11 4 3616 3709 640583708 640583614 7.700000e-13 86.1
28 TraesCS5B01G376100 chr2D 88.710 62 6 1 3568 3629 78525448 78525388 1.670000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G376100 chr5B 553943271 553947593 4322 False 7984 7984 100.000 1 4323 1 chr5B.!!$F2 4322
1 TraesCS5B01G376100 chr5B 403534546 403535291 745 False 553 553 80.186 2410 3155 1 chr5B.!!$F1 745
2 TraesCS5B01G376100 chr5A 572696546 572699818 3272 True 4761 4761 92.795 293 3628 1 chr5A.!!$R1 3335
3 TraesCS5B01G376100 chr5A 444088565 444089310 745 False 580 580 80.826 2410 3155 1 chr5A.!!$F1 745
4 TraesCS5B01G376100 chr5D 453412268 453414275 2007 False 2915 2915 92.965 321 2332 1 chr5D.!!$F2 2011
5 TraesCS5B01G376100 chr5D 453421778 453423776 1998 False 2512 2512 89.758 2340 4303 1 chr5D.!!$F3 1963
6 TraesCS5B01G376100 chr5D 343119543 343120288 745 False 531 531 79.708 2410 3155 1 chr5D.!!$F1 745
7 TraesCS5B01G376100 chr1A 73092935 73093601 666 True 551 551 81.669 2410 3076 1 chr1A.!!$R1 666
8 TraesCS5B01G376100 chr1D 73315726 73316438 712 True 520 520 79.916 2410 3122 1 chr1D.!!$R1 712
9 TraesCS5B01G376100 chr6D 271085595 271086269 674 True 377 377 76.912 2436 3110 1 chr6D.!!$R1 674
10 TraesCS5B01G376100 chr6A 384921559 384922233 674 False 377 377 76.946 2436 3110 1 chr6A.!!$F2 674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 261 0.035458 CCCCAGGCCGCTCTATTTAG 59.965 60.0 0.00 0.00 0.0 1.85 F
1863 1902 0.108615 CCTTCTGGTACCTGCTGTCG 60.109 60.0 14.36 0.37 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2075 2114 0.106149 GTCTTTGGAGGTGGTCACGT 59.894 55.0 0.0 0.0 0.0 4.49 R
3771 3861 0.592247 CGTTCGCCCATTAGCATTGC 60.592 55.0 0.0 0.0 0.0 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 4.143333 CGACCCCGCCGAGTGAAT 62.143 66.667 0.00 0.00 0.00 2.57
50 51 2.202892 GACCCCGCCGAGTGAATC 60.203 66.667 0.00 0.00 0.00 2.52
58 59 3.155424 CGAGTGAATCGTTGCGCA 58.845 55.556 5.66 5.66 46.62 6.09
59 60 1.225475 CGAGTGAATCGTTGCGCAC 60.225 57.895 11.12 4.51 46.62 5.34
67 68 4.643385 CGTTGCGCACGCGAACTT 62.643 61.111 23.80 0.00 43.37 2.66
68 69 3.085010 GTTGCGCACGCGAACTTG 61.085 61.111 15.93 0.22 45.51 3.16
69 70 4.954680 TTGCGCACGCGAACTTGC 62.955 61.111 15.93 11.86 45.51 4.01
90 91 3.050275 GGCGGCGCTCTGTTTCTT 61.050 61.111 32.30 0.00 0.00 2.52
91 92 2.174349 GCGGCGCTCTGTTTCTTG 59.826 61.111 26.86 0.00 0.00 3.02
92 93 2.607892 GCGGCGCTCTGTTTCTTGT 61.608 57.895 26.86 0.00 0.00 3.16
93 94 1.289109 GCGGCGCTCTGTTTCTTGTA 61.289 55.000 26.86 0.00 0.00 2.41
94 95 1.144969 CGGCGCTCTGTTTCTTGTAA 58.855 50.000 7.64 0.00 0.00 2.41
95 96 1.136336 CGGCGCTCTGTTTCTTGTAAC 60.136 52.381 7.64 0.00 0.00 2.50
96 97 1.136336 GGCGCTCTGTTTCTTGTAACG 60.136 52.381 7.64 0.00 0.00 3.18
97 98 1.721804 GCGCTCTGTTTCTTGTAACGC 60.722 52.381 0.00 0.00 36.82 4.84
98 99 1.136336 CGCTCTGTTTCTTGTAACGCC 60.136 52.381 0.00 0.00 0.00 5.68
99 100 1.871039 GCTCTGTTTCTTGTAACGCCA 59.129 47.619 0.00 0.00 0.00 5.69
100 101 2.096218 GCTCTGTTTCTTGTAACGCCAG 60.096 50.000 0.00 0.00 0.00 4.85
101 102 3.390135 CTCTGTTTCTTGTAACGCCAGA 58.610 45.455 0.00 0.00 0.00 3.86
102 103 3.128349 TCTGTTTCTTGTAACGCCAGAC 58.872 45.455 0.00 0.00 0.00 3.51
103 104 3.131396 CTGTTTCTTGTAACGCCAGACT 58.869 45.455 0.00 0.00 0.00 3.24
104 105 4.038282 TCTGTTTCTTGTAACGCCAGACTA 59.962 41.667 0.00 0.00 0.00 2.59
105 106 4.053295 TGTTTCTTGTAACGCCAGACTAC 58.947 43.478 0.00 0.00 0.00 2.73
106 107 2.624316 TCTTGTAACGCCAGACTACG 57.376 50.000 0.00 0.00 0.00 3.51
107 108 1.881973 TCTTGTAACGCCAGACTACGT 59.118 47.619 0.00 0.00 46.07 3.57
108 109 2.095567 TCTTGTAACGCCAGACTACGTC 60.096 50.000 0.00 0.00 42.68 4.34
109 110 0.523072 TGTAACGCCAGACTACGTCC 59.477 55.000 0.00 0.00 42.68 4.79
110 111 0.522076 GTAACGCCAGACTACGTCCG 60.522 60.000 0.00 0.00 42.68 4.79
111 112 0.673333 TAACGCCAGACTACGTCCGA 60.673 55.000 0.00 0.00 42.68 4.55
112 113 1.310933 AACGCCAGACTACGTCCGAT 61.311 55.000 0.00 0.00 42.68 4.18
113 114 1.009900 CGCCAGACTACGTCCGATC 60.010 63.158 0.00 0.00 32.18 3.69
114 115 1.009900 GCCAGACTACGTCCGATCG 60.010 63.158 8.51 8.51 32.18 3.69
115 116 1.009900 CCAGACTACGTCCGATCGC 60.010 63.158 10.32 0.00 32.18 4.58
116 117 1.009900 CAGACTACGTCCGATCGCC 60.010 63.158 10.32 0.86 32.18 5.54
117 118 2.052414 GACTACGTCCGATCGCCG 60.052 66.667 19.54 19.54 38.18 6.46
132 133 2.202824 CCGGATTTGCGGCGTCTA 60.203 61.111 9.37 0.00 0.00 2.59
133 134 1.594293 CCGGATTTGCGGCGTCTAT 60.594 57.895 9.37 0.00 0.00 1.98
134 135 1.157870 CCGGATTTGCGGCGTCTATT 61.158 55.000 9.37 0.00 0.00 1.73
135 136 0.042188 CGGATTTGCGGCGTCTATTG 60.042 55.000 9.37 0.00 0.00 1.90
136 137 1.295792 GGATTTGCGGCGTCTATTGA 58.704 50.000 9.37 0.00 0.00 2.57
137 138 1.261619 GGATTTGCGGCGTCTATTGAG 59.738 52.381 9.37 0.00 0.00 3.02
138 139 2.201732 GATTTGCGGCGTCTATTGAGA 58.798 47.619 9.37 0.00 0.00 3.27
139 140 1.640428 TTTGCGGCGTCTATTGAGAG 58.360 50.000 9.37 0.00 30.20 3.20
140 141 0.806102 TTGCGGCGTCTATTGAGAGC 60.806 55.000 9.37 0.00 30.20 4.09
141 142 2.296480 GCGGCGTCTATTGAGAGCG 61.296 63.158 9.37 0.00 30.20 5.03
142 143 1.658717 CGGCGTCTATTGAGAGCGG 60.659 63.158 0.00 0.05 30.20 5.52
143 144 1.300233 GGCGTCTATTGAGAGCGGG 60.300 63.158 0.00 0.00 30.20 6.13
144 145 1.734137 GCGTCTATTGAGAGCGGGA 59.266 57.895 0.00 0.00 30.20 5.14
145 146 0.102481 GCGTCTATTGAGAGCGGGAA 59.898 55.000 0.00 0.00 30.20 3.97
146 147 1.841450 CGTCTATTGAGAGCGGGAAC 58.159 55.000 0.00 0.00 30.20 3.62
164 165 5.224888 GGGAACGACCAAGTTTAAATTTCC 58.775 41.667 0.00 0.00 41.20 3.13
165 166 5.010314 GGGAACGACCAAGTTTAAATTTCCT 59.990 40.000 0.00 0.00 41.20 3.36
166 167 5.918576 GGAACGACCAAGTTTAAATTTCCTG 59.081 40.000 0.00 0.00 38.79 3.86
167 168 4.866921 ACGACCAAGTTTAAATTTCCTGC 58.133 39.130 0.00 0.00 0.00 4.85
168 169 4.339814 ACGACCAAGTTTAAATTTCCTGCA 59.660 37.500 0.00 0.00 0.00 4.41
169 170 5.010617 ACGACCAAGTTTAAATTTCCTGCAT 59.989 36.000 0.00 0.00 0.00 3.96
170 171 5.572896 CGACCAAGTTTAAATTTCCTGCATC 59.427 40.000 0.00 0.00 0.00 3.91
171 172 5.793817 ACCAAGTTTAAATTTCCTGCATCC 58.206 37.500 0.00 0.00 0.00 3.51
172 173 5.543790 ACCAAGTTTAAATTTCCTGCATCCT 59.456 36.000 0.00 0.00 0.00 3.24
173 174 5.870978 CCAAGTTTAAATTTCCTGCATCCTG 59.129 40.000 0.00 0.00 0.00 3.86
174 175 6.295236 CCAAGTTTAAATTTCCTGCATCCTGA 60.295 38.462 0.00 0.00 0.00 3.86
175 176 6.521151 AGTTTAAATTTCCTGCATCCTGAG 57.479 37.500 0.00 0.00 0.00 3.35
176 177 5.420104 AGTTTAAATTTCCTGCATCCTGAGG 59.580 40.000 0.00 0.00 0.00 3.86
177 178 1.772836 AATTTCCTGCATCCTGAGGC 58.227 50.000 0.00 0.00 38.80 4.70
178 179 0.106318 ATTTCCTGCATCCTGAGGCC 60.106 55.000 0.00 0.00 37.30 5.19
179 180 2.541547 TTTCCTGCATCCTGAGGCCG 62.542 60.000 0.00 0.00 37.30 6.13
180 181 4.559063 CCTGCATCCTGAGGCCGG 62.559 72.222 0.00 0.00 37.30 6.13
200 201 4.329545 CGTGGGGGTGTGACTGGG 62.330 72.222 0.00 0.00 0.00 4.45
201 202 2.852075 GTGGGGGTGTGACTGGGA 60.852 66.667 0.00 0.00 0.00 4.37
202 203 2.529136 TGGGGGTGTGACTGGGAG 60.529 66.667 0.00 0.00 0.00 4.30
203 204 4.035102 GGGGGTGTGACTGGGAGC 62.035 72.222 0.00 0.00 0.00 4.70
204 205 2.930562 GGGGTGTGACTGGGAGCT 60.931 66.667 0.00 0.00 0.00 4.09
205 206 1.612442 GGGGTGTGACTGGGAGCTA 60.612 63.158 0.00 0.00 0.00 3.32
206 207 1.617947 GGGGTGTGACTGGGAGCTAG 61.618 65.000 0.00 0.00 0.00 3.42
207 208 1.617947 GGGTGTGACTGGGAGCTAGG 61.618 65.000 0.00 0.00 0.00 3.02
208 209 0.905337 GGTGTGACTGGGAGCTAGGT 60.905 60.000 0.00 0.00 0.00 3.08
209 210 0.533032 GTGTGACTGGGAGCTAGGTC 59.467 60.000 13.67 13.67 0.00 3.85
210 211 0.965866 TGTGACTGGGAGCTAGGTCG 60.966 60.000 15.43 4.94 0.00 4.79
211 212 2.052690 TGACTGGGAGCTAGGTCGC 61.053 63.158 26.90 26.90 0.00 5.19
212 213 2.760385 ACTGGGAGCTAGGTCGCC 60.760 66.667 29.34 23.22 0.00 5.54
213 214 3.541713 CTGGGAGCTAGGTCGCCC 61.542 72.222 29.34 20.74 45.10 6.13
217 218 3.541713 GAGCTAGGTCGCCCCCAG 61.542 72.222 6.12 0.00 0.00 4.45
218 219 4.075793 AGCTAGGTCGCCCCCAGA 62.076 66.667 0.00 0.00 0.00 3.86
219 220 3.541713 GCTAGGTCGCCCCCAGAG 61.542 72.222 0.00 0.00 0.00 3.35
220 221 2.279073 CTAGGTCGCCCCCAGAGA 59.721 66.667 0.00 0.00 0.00 3.10
221 222 2.043248 TAGGTCGCCCCCAGAGAC 60.043 66.667 0.00 0.00 0.00 3.36
225 226 4.689549 TCGCCCCCAGAGACCGAA 62.690 66.667 0.00 0.00 0.00 4.30
226 227 4.452733 CGCCCCCAGAGACCGAAC 62.453 72.222 0.00 0.00 0.00 3.95
227 228 3.003763 GCCCCCAGAGACCGAACT 61.004 66.667 0.00 0.00 0.00 3.01
228 229 1.684734 GCCCCCAGAGACCGAACTA 60.685 63.158 0.00 0.00 0.00 2.24
229 230 1.677637 GCCCCCAGAGACCGAACTAG 61.678 65.000 0.00 0.00 0.00 2.57
230 231 1.677637 CCCCCAGAGACCGAACTAGC 61.678 65.000 0.00 0.00 0.00 3.42
231 232 1.433879 CCCAGAGACCGAACTAGCG 59.566 63.158 0.00 0.00 0.00 4.26
232 233 1.226717 CCAGAGACCGAACTAGCGC 60.227 63.158 0.00 0.00 0.00 5.92
233 234 1.226717 CAGAGACCGAACTAGCGCC 60.227 63.158 2.29 0.00 0.00 6.53
234 235 2.278013 GAGACCGAACTAGCGCCG 60.278 66.667 2.29 0.00 0.00 6.46
257 258 3.171388 CCCCCAGGCCGCTCTATT 61.171 66.667 0.00 0.00 0.00 1.73
258 259 2.757124 CCCCCAGGCCGCTCTATTT 61.757 63.158 0.00 0.00 0.00 1.40
259 260 1.415672 CCCCCAGGCCGCTCTATTTA 61.416 60.000 0.00 0.00 0.00 1.40
260 261 0.035458 CCCCAGGCCGCTCTATTTAG 59.965 60.000 0.00 0.00 0.00 1.85
261 262 0.035458 CCCAGGCCGCTCTATTTAGG 59.965 60.000 0.00 0.00 0.00 2.69
264 265 3.245084 GCCGCTCTATTTAGGCGC 58.755 61.111 0.00 0.00 46.29 6.53
265 266 2.318352 GCCGCTCTATTTAGGCGCC 61.318 63.158 21.89 21.89 46.29 6.53
266 267 1.668151 CCGCTCTATTTAGGCGCCC 60.668 63.158 26.15 5.07 46.29 6.13
267 268 1.367840 CGCTCTATTTAGGCGCCCT 59.632 57.895 26.15 13.52 42.28 5.19
268 269 0.946221 CGCTCTATTTAGGCGCCCTG 60.946 60.000 26.15 7.22 42.28 4.45
269 270 0.603975 GCTCTATTTAGGCGCCCTGG 60.604 60.000 26.15 7.92 34.61 4.45
270 271 0.035458 CTCTATTTAGGCGCCCTGGG 59.965 60.000 26.15 8.86 34.61 4.45
271 272 1.073199 CTATTTAGGCGCCCTGGGG 59.927 63.158 26.15 5.60 34.61 4.96
288 289 4.162690 GGGCGAACGGCTGGAGAT 62.163 66.667 18.90 0.00 42.94 2.75
289 290 2.892425 GGCGAACGGCTGGAGATG 60.892 66.667 13.15 0.00 42.94 2.90
290 291 2.892425 GCGAACGGCTGGAGATGG 60.892 66.667 0.00 0.00 39.11 3.51
291 292 2.892425 CGAACGGCTGGAGATGGC 60.892 66.667 0.00 0.00 0.00 4.40
303 304 1.236628 GAGATGGCCTAATGCAGCTG 58.763 55.000 10.11 10.11 43.89 4.24
499 504 0.583917 GAGCGAGCGATTGGGATTTC 59.416 55.000 0.00 0.00 0.00 2.17
516 525 6.209391 TGGGATTTCCTTTCTTTCTGATGAAC 59.791 38.462 0.00 0.00 36.20 3.18
577 593 5.000012 TCGAGAGGCTTCTTGTTCTTATC 58.000 43.478 12.50 0.00 36.40 1.75
593 609 6.317642 TGTTCTTATCACGGGTATCATTTTGG 59.682 38.462 0.00 0.00 0.00 3.28
594 610 4.819630 TCTTATCACGGGTATCATTTTGGC 59.180 41.667 0.00 0.00 0.00 4.52
595 611 2.799126 TCACGGGTATCATTTTGGCT 57.201 45.000 0.00 0.00 0.00 4.75
596 612 3.080300 TCACGGGTATCATTTTGGCTT 57.920 42.857 0.00 0.00 0.00 4.35
597 613 4.223556 TCACGGGTATCATTTTGGCTTA 57.776 40.909 0.00 0.00 0.00 3.09
598 614 4.787551 TCACGGGTATCATTTTGGCTTAT 58.212 39.130 0.00 0.00 0.00 1.73
599 615 4.819630 TCACGGGTATCATTTTGGCTTATC 59.180 41.667 0.00 0.00 0.00 1.75
600 616 4.578516 CACGGGTATCATTTTGGCTTATCA 59.421 41.667 0.00 0.00 0.00 2.15
601 617 5.241506 CACGGGTATCATTTTGGCTTATCAT 59.758 40.000 0.00 0.00 0.00 2.45
602 618 5.473504 ACGGGTATCATTTTGGCTTATCATC 59.526 40.000 0.00 0.00 0.00 2.92
603 619 5.707298 CGGGTATCATTTTGGCTTATCATCT 59.293 40.000 0.00 0.00 0.00 2.90
604 620 6.348786 CGGGTATCATTTTGGCTTATCATCTG 60.349 42.308 0.00 0.00 0.00 2.90
605 621 6.071728 GGGTATCATTTTGGCTTATCATCTGG 60.072 42.308 0.00 0.00 0.00 3.86
606 622 4.924305 TCATTTTGGCTTATCATCTGGC 57.076 40.909 0.00 0.00 0.00 4.85
659 675 1.003839 TTCCGCGGCAGAATTCTGT 60.004 52.632 30.88 0.00 45.45 3.41
662 678 1.512734 CGCGGCAGAATTCTGTTGC 60.513 57.895 30.88 29.84 45.45 4.17
669 689 2.127270 AATTCTGTTGCGCACGCG 60.127 55.556 11.12 3.53 45.51 6.01
736 760 3.945921 CACAGTGCTCTGAATGAATGGAT 59.054 43.478 21.96 0.00 43.76 3.41
737 761 3.945921 ACAGTGCTCTGAATGAATGGATG 59.054 43.478 21.96 0.00 43.76 3.51
738 762 3.315470 CAGTGCTCTGAATGAATGGATGG 59.685 47.826 10.27 0.00 43.76 3.51
739 763 3.201487 AGTGCTCTGAATGAATGGATGGA 59.799 43.478 0.00 0.00 0.00 3.41
752 776 1.729881 GATGGAATCAACCAGCGGC 59.270 57.895 0.00 0.00 44.70 6.53
753 777 1.728490 GATGGAATCAACCAGCGGCC 61.728 60.000 0.00 0.00 44.70 6.13
754 778 2.361104 GGAATCAACCAGCGGCCA 60.361 61.111 2.24 0.00 0.00 5.36
826 850 4.812476 TCATCGACGGCGGCAAGG 62.812 66.667 15.54 0.00 38.28 3.61
869 893 3.302555 CCGGATGCATTTCATTTCATCG 58.697 45.455 0.00 0.00 36.95 3.84
870 894 3.003585 CCGGATGCATTTCATTTCATCGA 59.996 43.478 0.00 0.00 36.95 3.59
871 895 4.216731 CGGATGCATTTCATTTCATCGAG 58.783 43.478 0.00 0.00 36.95 4.04
873 897 5.050159 CGGATGCATTTCATTTCATCGAGTA 60.050 40.000 0.00 0.00 36.95 2.59
874 898 6.138761 GGATGCATTTCATTTCATCGAGTAC 58.861 40.000 0.00 0.00 36.95 2.73
875 899 6.017605 GGATGCATTTCATTTCATCGAGTACT 60.018 38.462 0.00 0.00 36.95 2.73
876 900 6.349973 TGCATTTCATTTCATCGAGTACTC 57.650 37.500 13.18 13.18 0.00 2.59
877 901 5.294306 TGCATTTCATTTCATCGAGTACTCC 59.706 40.000 17.23 0.00 0.00 3.85
878 902 5.294306 GCATTTCATTTCATCGAGTACTCCA 59.706 40.000 17.23 4.78 0.00 3.86
879 903 6.017605 GCATTTCATTTCATCGAGTACTCCAT 60.018 38.462 17.23 7.27 0.00 3.41
880 904 7.467811 GCATTTCATTTCATCGAGTACTCCATT 60.468 37.037 17.23 0.00 0.00 3.16
881 905 7.921786 TTTCATTTCATCGAGTACTCCATTT 57.078 32.000 17.23 0.00 0.00 2.32
882 906 7.539712 TTCATTTCATCGAGTACTCCATTTC 57.460 36.000 17.23 0.00 0.00 2.17
884 908 7.275183 TCATTTCATCGAGTACTCCATTTCAT 58.725 34.615 17.23 0.84 0.00 2.57
885 909 7.439356 TCATTTCATCGAGTACTCCATTTCATC 59.561 37.037 17.23 0.00 0.00 2.92
886 910 6.471233 TTCATCGAGTACTCCATTTCATCT 57.529 37.500 17.23 0.00 0.00 2.90
887 911 6.078202 TCATCGAGTACTCCATTTCATCTC 57.922 41.667 17.23 0.00 0.00 2.75
888 912 5.594317 TCATCGAGTACTCCATTTCATCTCA 59.406 40.000 17.23 0.00 0.00 3.27
889 913 6.266330 TCATCGAGTACTCCATTTCATCTCAT 59.734 38.462 17.23 0.00 0.00 2.90
890 914 6.471233 TCGAGTACTCCATTTCATCTCATT 57.529 37.500 17.23 0.00 0.00 2.57
895 919 9.770097 GAGTACTCCATTTCATCTCATTTCATA 57.230 33.333 12.13 0.00 0.00 2.15
917 941 2.646798 AGGGATCCCTTAGATGATTGGC 59.353 50.000 28.96 0.00 45.70 4.52
1020 1059 1.298190 GTCGTACGAGGCGTCCATC 60.298 63.158 20.18 0.00 41.54 3.51
1386 1425 4.410400 CCCGGGGAGCAGAACACC 62.410 72.222 14.71 0.00 0.00 4.16
1457 1496 0.172578 CGCACCCTGTTCGACATCTA 59.827 55.000 0.00 0.00 0.00 1.98
1524 1563 2.683933 TCCTCCAGGGTCTTCGGC 60.684 66.667 0.00 0.00 36.25 5.54
1641 1680 3.454082 AGATGGTCATCTGGAAGTTCCTC 59.546 47.826 22.41 8.47 45.77 3.71
1809 1848 4.281947 GGCGCCGCCTACTACCTC 62.282 72.222 23.30 0.00 46.69 3.85
1812 1851 2.553727 CGCCGCCTACTACCTCCTC 61.554 68.421 0.00 0.00 0.00 3.71
1863 1902 0.108615 CCTTCTGGTACCTGCTGTCG 60.109 60.000 14.36 0.37 0.00 4.35
2070 2109 3.434319 TACTCGTCGGCCGTCACC 61.434 66.667 27.15 10.76 37.94 4.02
2221 2289 1.237533 TGTGGTCGAACAGTACGCTA 58.762 50.000 1.63 0.00 0.00 4.26
2333 2401 2.139917 TCGGAAACATTCAGGTCAACG 58.860 47.619 0.00 0.00 0.00 4.10
2337 2405 3.127030 GGAAACATTCAGGTCAACGATCC 59.873 47.826 0.00 0.00 0.00 3.36
2338 2406 3.703001 AACATTCAGGTCAACGATCCT 57.297 42.857 0.00 0.00 33.96 3.24
2379 2447 3.562176 GCCTAGCTGCCCCATTTATGTAT 60.562 47.826 0.00 0.00 0.00 2.29
2380 2448 4.012374 CCTAGCTGCCCCATTTATGTATG 58.988 47.826 0.00 0.00 0.00 2.39
2381 2449 3.600448 AGCTGCCCCATTTATGTATGT 57.400 42.857 0.00 0.00 0.00 2.29
2383 2451 2.958355 GCTGCCCCATTTATGTATGTGT 59.042 45.455 0.00 0.00 0.00 3.72
2386 2454 3.131933 TGCCCCATTTATGTATGTGTTGC 59.868 43.478 0.00 0.00 0.00 4.17
2563 2642 4.402528 TGGATCAACACCCGCGGG 62.403 66.667 42.17 42.17 42.03 6.13
2644 2723 4.463879 CTCTGCCTGGGCCTCGTG 62.464 72.222 4.53 0.00 41.09 4.35
3124 3203 2.747855 CACCTCAAGCGGAAGGCC 60.748 66.667 0.00 0.00 45.17 5.19
3190 3269 3.265791 GAGCTTCAAGACCACCATACTG 58.734 50.000 0.00 0.00 0.00 2.74
3390 3474 8.643324 ACTTTGACAGTTTGACTATTCTCTACT 58.357 33.333 0.00 0.00 27.32 2.57
3490 3574 6.102663 AGAACACGAGATTCAACAATAGGAG 58.897 40.000 0.00 0.00 0.00 3.69
3511 3595 8.052621 AGGAGATAGAACCAGACTAGTATCTT 57.947 38.462 0.00 0.00 0.00 2.40
3522 3606 9.036980 ACCAGACTAGTATCTTTGATAAGTGTT 57.963 33.333 0.00 0.00 32.98 3.32
3523 3607 9.307121 CCAGACTAGTATCTTTGATAAGTGTTG 57.693 37.037 0.00 0.00 32.98 3.33
3529 3613 7.094631 AGTATCTTTGATAAGTGTTGCACGTA 58.905 34.615 0.00 0.00 39.64 3.57
3530 3614 6.795098 ATCTTTGATAAGTGTTGCACGTAA 57.205 33.333 0.00 0.00 39.64 3.18
3531 3615 6.606234 TCTTTGATAAGTGTTGCACGTAAA 57.394 33.333 0.00 0.00 39.64 2.01
3593 3677 9.003658 CAACTTTAGTTAACTGAGGATGACAAT 57.996 33.333 18.56 0.00 36.32 2.71
3634 3718 4.081198 ACAACTTTCTGTTTGGATGGCAAA 60.081 37.500 0.00 0.00 36.63 3.68
3638 3722 5.759763 ACTTTCTGTTTGGATGGCAAATTTC 59.240 36.000 0.00 0.00 0.00 2.17
3639 3723 5.549742 TTCTGTTTGGATGGCAAATTTCT 57.450 34.783 0.00 0.00 0.00 2.52
3688 3772 9.421806 TGGCAATTTTACTTATGAAAATGTCAG 57.578 29.630 0.00 0.00 40.43 3.51
3690 3774 9.638239 GCAATTTTACTTATGAAAATGTCAGGA 57.362 29.630 0.00 0.00 40.43 3.86
3698 3782 4.074627 TGAAAATGTCAGGACGGTGTTA 57.925 40.909 0.00 0.00 0.00 2.41
3700 3784 3.764237 AAATGTCAGGACGGTGTTACT 57.236 42.857 0.00 0.00 0.00 2.24
3711 3795 1.519408 GGTGTTACTTCGTGCCACAT 58.481 50.000 0.00 0.00 0.00 3.21
3729 3819 6.663093 TGCCACATCACTTATCATTTAGGTTT 59.337 34.615 0.00 0.00 0.00 3.27
3731 3821 7.489113 GCCACATCACTTATCATTTAGGTTTTG 59.511 37.037 0.00 0.00 0.00 2.44
3732 3822 8.522830 CCACATCACTTATCATTTAGGTTTTGT 58.477 33.333 0.00 0.00 0.00 2.83
3752 3842 4.593157 TGTAAAACAACGTGTCTCATTGC 58.407 39.130 0.00 0.00 0.00 3.56
3771 3861 3.194861 TGCCGATTTCATTAGAGAACCG 58.805 45.455 0.00 0.00 0.00 4.44
3793 3883 0.732571 ATGCTAATGGGCGAACGTTG 59.267 50.000 5.00 0.00 34.52 4.10
3808 3899 1.489230 ACGTTGTTGGGAAGGAACTCT 59.511 47.619 0.00 0.00 38.49 3.24
3809 3900 1.873591 CGTTGTTGGGAAGGAACTCTG 59.126 52.381 0.00 0.00 38.49 3.35
3812 3903 2.408565 TGTTGGGAAGGAACTCTGAGT 58.591 47.619 4.06 4.06 38.49 3.41
3813 3904 2.104792 TGTTGGGAAGGAACTCTGAGTG 59.895 50.000 11.71 0.00 38.49 3.51
3818 3909 1.614413 GAAGGAACTCTGAGTGGACGT 59.386 52.381 11.71 3.15 38.49 4.34
3819 3910 0.962489 AGGAACTCTGAGTGGACGTG 59.038 55.000 11.71 0.00 0.00 4.49
3820 3911 0.667792 GGAACTCTGAGTGGACGTGC 60.668 60.000 11.71 0.00 0.00 5.34
3821 3912 1.004277 GAACTCTGAGTGGACGTGCG 61.004 60.000 11.71 0.00 0.00 5.34
3826 3917 3.106407 GAGTGGACGTGCGCTCAC 61.106 66.667 36.13 17.74 39.78 3.51
3832 3923 1.565156 GGACGTGCGCTCACAATTGA 61.565 55.000 13.59 0.00 43.28 2.57
3838 3929 1.733912 TGCGCTCACAATTGACTGATC 59.266 47.619 13.59 1.21 0.00 2.92
3850 3941 3.150848 TGACTGATCGAGATCAAACGG 57.849 47.619 15.57 7.63 46.10 4.44
3862 3953 5.169836 AGATCAAACGGTGTCAGTTTTTC 57.830 39.130 0.00 0.00 39.50 2.29
3863 3954 3.768468 TCAAACGGTGTCAGTTTTTCC 57.232 42.857 0.00 0.00 39.50 3.13
3864 3955 3.082548 TCAAACGGTGTCAGTTTTTCCA 58.917 40.909 0.00 0.00 39.50 3.53
3865 3956 3.506455 TCAAACGGTGTCAGTTTTTCCAA 59.494 39.130 0.00 0.00 39.50 3.53
3866 3957 4.022242 TCAAACGGTGTCAGTTTTTCCAAA 60.022 37.500 0.00 0.00 39.50 3.28
3867 3958 4.522722 AACGGTGTCAGTTTTTCCAAAA 57.477 36.364 0.00 0.00 0.00 2.44
3868 3959 4.522722 ACGGTGTCAGTTTTTCCAAAAA 57.477 36.364 0.00 0.00 35.67 1.94
3901 3992 7.880105 TCTATGTAGACATTGCTGATAGTCTG 58.120 38.462 0.00 0.00 41.14 3.51
3913 4004 4.637534 GCTGATAGTCTGAAGAAATTGCCA 59.362 41.667 0.00 0.00 0.00 4.92
3920 4011 2.751806 CTGAAGAAATTGCCACCCTCTC 59.248 50.000 0.00 0.00 0.00 3.20
3926 4017 1.588239 ATTGCCACCCTCTCAGATCA 58.412 50.000 0.00 0.00 0.00 2.92
3928 4019 0.979709 TGCCACCCTCTCAGATCAGG 60.980 60.000 0.00 0.00 0.00 3.86
3932 4023 2.506061 CCCTCTCAGATCAGGGCCG 61.506 68.421 3.02 0.00 43.29 6.13
3935 4026 1.000359 TCTCAGATCAGGGCCGACA 60.000 57.895 0.00 0.00 0.00 4.35
3950 4041 1.229428 CGACACATGAGCAACCAGTT 58.771 50.000 0.00 0.00 0.00 3.16
3951 4042 1.195448 CGACACATGAGCAACCAGTTC 59.805 52.381 0.00 0.00 0.00 3.01
3952 4043 1.537202 GACACATGAGCAACCAGTTCC 59.463 52.381 0.00 0.00 0.00 3.62
3953 4044 1.133823 ACACATGAGCAACCAGTTCCA 60.134 47.619 0.00 0.00 0.00 3.53
3954 4045 1.955778 CACATGAGCAACCAGTTCCAA 59.044 47.619 0.00 0.00 0.00 3.53
3956 4047 1.270550 CATGAGCAACCAGTTCCAACC 59.729 52.381 0.00 0.00 0.00 3.77
3957 4048 0.550914 TGAGCAACCAGTTCCAACCT 59.449 50.000 0.00 0.00 0.00 3.50
3958 4049 1.239347 GAGCAACCAGTTCCAACCTC 58.761 55.000 0.00 0.00 0.00 3.85
3959 4050 0.535102 AGCAACCAGTTCCAACCTCG 60.535 55.000 0.00 0.00 0.00 4.63
3960 4051 1.515521 GCAACCAGTTCCAACCTCGG 61.516 60.000 0.00 0.00 0.00 4.63
3961 4052 0.107831 CAACCAGTTCCAACCTCGGA 59.892 55.000 0.00 0.00 0.00 4.55
3962 4053 1.064825 AACCAGTTCCAACCTCGGAT 58.935 50.000 0.00 0.00 34.19 4.18
3963 4054 1.064825 ACCAGTTCCAACCTCGGATT 58.935 50.000 0.00 0.00 34.19 3.01
3964 4055 1.423921 ACCAGTTCCAACCTCGGATTT 59.576 47.619 0.00 0.00 34.19 2.17
3965 4056 1.812571 CCAGTTCCAACCTCGGATTTG 59.187 52.381 0.00 0.00 34.19 2.32
3967 4058 3.558321 CCAGTTCCAACCTCGGATTTGTA 60.558 47.826 0.00 0.00 34.19 2.41
3968 4059 3.684788 CAGTTCCAACCTCGGATTTGTAG 59.315 47.826 0.00 0.00 34.19 2.74
3970 4061 2.262637 TCCAACCTCGGATTTGTAGGT 58.737 47.619 0.00 0.00 45.62 3.08
4004 4101 9.442033 GGTGAATTTTATAGTAATTTACCGCAC 57.558 33.333 14.81 9.47 39.94 5.34
4009 4106 6.810888 TTATAGTAATTTACCGCACGACAC 57.189 37.500 2.92 0.00 0.00 3.67
4028 4125 2.735134 CACGTAGCTAAAGACCCACAAC 59.265 50.000 0.00 0.00 0.00 3.32
4030 4127 2.993899 CGTAGCTAAAGACCCACAACTG 59.006 50.000 0.00 0.00 0.00 3.16
4031 4128 2.568623 AGCTAAAGACCCACAACTGG 57.431 50.000 0.00 0.00 37.29 4.00
4037 4140 1.150536 GACCCACAACTGGCTGGAA 59.849 57.895 0.00 0.00 36.00 3.53
4039 4142 1.152777 CCCACAACTGGCTGGAACA 60.153 57.895 0.00 0.00 36.00 3.18
4043 4146 0.532862 ACAACTGGCTGGAACACTCG 60.533 55.000 0.00 0.00 0.00 4.18
4066 4169 5.868801 CGAGGCAAAAACATGGATAAAACAT 59.131 36.000 0.00 0.00 0.00 2.71
4078 4181 8.332464 ACATGGATAAAACATATTACAACGTCG 58.668 33.333 0.00 0.00 0.00 5.12
4093 4196 3.580794 ACGTCGAACACTAGCAAAAAC 57.419 42.857 0.00 0.00 0.00 2.43
4094 4197 2.286025 ACGTCGAACACTAGCAAAAACC 59.714 45.455 0.00 0.00 0.00 3.27
4096 4199 3.059188 CGTCGAACACTAGCAAAAACCAT 60.059 43.478 0.00 0.00 0.00 3.55
4097 4200 4.464112 GTCGAACACTAGCAAAAACCATC 58.536 43.478 0.00 0.00 0.00 3.51
4098 4201 4.213482 GTCGAACACTAGCAAAAACCATCT 59.787 41.667 0.00 0.00 0.00 2.90
4099 4202 4.451096 TCGAACACTAGCAAAAACCATCTC 59.549 41.667 0.00 0.00 0.00 2.75
4101 4204 5.438761 AACACTAGCAAAAACCATCTCAC 57.561 39.130 0.00 0.00 0.00 3.51
4173 4291 5.214293 ACTATTACAGGTATTCCCTCCGTT 58.786 41.667 0.00 0.00 43.86 4.44
4175 4293 1.946984 ACAGGTATTCCCTCCGTTCA 58.053 50.000 0.00 0.00 43.86 3.18
4176 4294 2.262637 ACAGGTATTCCCTCCGTTCAA 58.737 47.619 0.00 0.00 43.86 2.69
4182 4300 4.633126 GGTATTCCCTCCGTTCAAGTTTAC 59.367 45.833 0.00 0.00 0.00 2.01
4192 4310 3.607741 GTTCAAGTTTACTAGGCCCTCC 58.392 50.000 0.00 0.00 0.00 4.30
4194 4312 1.829222 CAAGTTTACTAGGCCCTCCGA 59.171 52.381 0.00 0.00 37.47 4.55
4195 4313 1.482954 AGTTTACTAGGCCCTCCGAC 58.517 55.000 0.00 0.00 37.47 4.79
4196 4314 1.006878 AGTTTACTAGGCCCTCCGACT 59.993 52.381 0.00 0.00 37.47 4.18
4197 4315 2.243221 AGTTTACTAGGCCCTCCGACTA 59.757 50.000 0.00 0.00 37.47 2.59
4198 4316 3.026694 GTTTACTAGGCCCTCCGACTAA 58.973 50.000 0.00 0.00 37.47 2.24
4199 4317 3.386932 TTACTAGGCCCTCCGACTAAA 57.613 47.619 0.00 0.00 37.47 1.85
4213 4331 4.021719 TCCGACTAAAACTCAGGTACCAAG 60.022 45.833 15.94 13.44 0.00 3.61
4229 4347 7.558444 CAGGTACCAAGGCAACCTATTAATTTA 59.442 37.037 15.94 0.00 41.75 1.40
4231 4349 8.410912 GGTACCAAGGCAACCTATTAATTTAAG 58.589 37.037 7.15 0.00 31.13 1.85
4256 4374 4.796830 TGCTACTTTAGACAGTAAATCGCG 59.203 41.667 0.00 0.00 0.00 5.87
4262 4380 1.927174 AGACAGTAAATCGCGTGCATC 59.073 47.619 5.77 0.00 0.00 3.91
4267 4385 3.297979 CAGTAAATCGCGTGCATCAAAAC 59.702 43.478 5.77 0.00 0.00 2.43
4268 4386 2.704725 AAATCGCGTGCATCAAAACT 57.295 40.000 5.77 0.00 0.00 2.66
4303 4421 6.693315 TGCTTGTTAATTGCCCTATAAGAC 57.307 37.500 0.00 0.00 0.00 3.01
4304 4422 5.295787 TGCTTGTTAATTGCCCTATAAGACG 59.704 40.000 0.00 0.00 0.00 4.18
4305 4423 5.277828 GCTTGTTAATTGCCCTATAAGACGG 60.278 44.000 0.00 0.00 0.00 4.79
4306 4424 4.710324 TGTTAATTGCCCTATAAGACGGG 58.290 43.478 0.00 0.00 43.60 5.28
4307 4425 4.164604 TGTTAATTGCCCTATAAGACGGGT 59.835 41.667 0.00 0.00 42.67 5.28
4308 4426 3.945640 AATTGCCCTATAAGACGGGTT 57.054 42.857 0.00 0.00 42.67 4.11
4309 4427 3.945640 ATTGCCCTATAAGACGGGTTT 57.054 42.857 0.00 0.00 42.67 3.27
4310 4428 2.702592 TGCCCTATAAGACGGGTTTG 57.297 50.000 0.00 0.00 42.67 2.93
4311 4429 1.210967 TGCCCTATAAGACGGGTTTGG 59.789 52.381 0.00 0.00 42.67 3.28
4312 4430 1.963172 CCCTATAAGACGGGTTTGGC 58.037 55.000 0.00 0.00 35.65 4.52
4313 4431 1.489230 CCCTATAAGACGGGTTTGGCT 59.511 52.381 0.00 0.00 35.65 4.75
4314 4432 2.484947 CCCTATAAGACGGGTTTGGCTC 60.485 54.545 0.00 0.00 35.65 4.70
4315 4433 2.169769 CCTATAAGACGGGTTTGGCTCA 59.830 50.000 0.00 0.00 0.00 4.26
4316 4434 2.403252 ATAAGACGGGTTTGGCTCAG 57.597 50.000 0.00 0.00 0.00 3.35
4317 4435 0.321298 TAAGACGGGTTTGGCTCAGC 60.321 55.000 0.00 0.00 0.00 4.26
4318 4436 2.032681 GACGGGTTTGGCTCAGCT 59.967 61.111 0.00 0.00 0.00 4.24
4319 4437 2.281761 ACGGGTTTGGCTCAGCTG 60.282 61.111 7.63 7.63 0.00 4.24
4320 4438 3.058160 CGGGTTTGGCTCAGCTGG 61.058 66.667 15.13 5.82 0.00 4.85
4321 4439 2.436109 GGGTTTGGCTCAGCTGGA 59.564 61.111 15.13 0.00 0.00 3.86
4322 4440 1.676967 GGGTTTGGCTCAGCTGGAG 60.677 63.158 15.13 11.07 46.93 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.143333 ATTCACTCGGCGGGGTCG 62.143 66.667 13.20 0.00 39.81 4.79
33 34 2.202892 GATTCACTCGGCGGGGTC 60.203 66.667 13.20 0.00 0.00 4.46
34 35 4.143333 CGATTCACTCGGCGGGGT 62.143 66.667 13.20 6.13 43.82 4.95
42 43 4.725758 GTGCGCAACGATTCACTC 57.274 55.556 14.00 0.00 0.00 3.51
51 52 3.085010 CAAGTTCGCGTGCGCAAC 61.085 61.111 14.00 6.31 42.06 4.17
52 53 4.954680 GCAAGTTCGCGTGCGCAA 62.955 61.111 14.00 0.00 42.15 4.85
73 74 3.050275 AAGAAACAGAGCGCCGCC 61.050 61.111 4.98 0.00 0.00 6.13
74 75 1.289109 TACAAGAAACAGAGCGCCGC 61.289 55.000 2.29 0.00 0.00 6.53
75 76 1.136336 GTTACAAGAAACAGAGCGCCG 60.136 52.381 2.29 0.00 0.00 6.46
76 77 1.136336 CGTTACAAGAAACAGAGCGCC 60.136 52.381 2.29 0.00 0.00 6.53
77 78 1.721804 GCGTTACAAGAAACAGAGCGC 60.722 52.381 0.00 0.00 35.77 5.92
78 79 1.136336 GGCGTTACAAGAAACAGAGCG 60.136 52.381 0.00 0.00 0.00 5.03
79 80 1.871039 TGGCGTTACAAGAAACAGAGC 59.129 47.619 0.00 0.00 0.00 4.09
80 81 3.184581 GTCTGGCGTTACAAGAAACAGAG 59.815 47.826 0.00 0.00 34.55 3.35
81 82 3.128349 GTCTGGCGTTACAAGAAACAGA 58.872 45.455 0.00 0.00 0.00 3.41
82 83 3.131396 AGTCTGGCGTTACAAGAAACAG 58.869 45.455 0.00 0.00 0.00 3.16
83 84 3.188159 AGTCTGGCGTTACAAGAAACA 57.812 42.857 0.00 0.00 0.00 2.83
84 85 3.120782 CGTAGTCTGGCGTTACAAGAAAC 59.879 47.826 0.00 0.00 0.00 2.78
85 86 3.243501 ACGTAGTCTGGCGTTACAAGAAA 60.244 43.478 0.00 0.00 29.74 2.52
86 87 2.294233 ACGTAGTCTGGCGTTACAAGAA 59.706 45.455 0.00 0.00 29.74 2.52
87 88 1.881973 ACGTAGTCTGGCGTTACAAGA 59.118 47.619 0.00 0.00 29.74 3.02
88 89 2.342910 ACGTAGTCTGGCGTTACAAG 57.657 50.000 0.00 0.00 29.74 3.16
116 117 0.042188 CAATAGACGCCGCAAATCCG 60.042 55.000 0.00 0.00 0.00 4.18
117 118 1.261619 CTCAATAGACGCCGCAAATCC 59.738 52.381 0.00 0.00 0.00 3.01
118 119 2.201732 TCTCAATAGACGCCGCAAATC 58.798 47.619 0.00 0.00 0.00 2.17
119 120 2.205074 CTCTCAATAGACGCCGCAAAT 58.795 47.619 0.00 0.00 0.00 2.32
120 121 1.640428 CTCTCAATAGACGCCGCAAA 58.360 50.000 0.00 0.00 0.00 3.68
121 122 0.806102 GCTCTCAATAGACGCCGCAA 60.806 55.000 0.00 0.00 0.00 4.85
122 123 1.226974 GCTCTCAATAGACGCCGCA 60.227 57.895 0.00 0.00 0.00 5.69
123 124 2.296480 CGCTCTCAATAGACGCCGC 61.296 63.158 0.00 0.00 0.00 6.53
124 125 1.658717 CCGCTCTCAATAGACGCCG 60.659 63.158 0.00 0.00 0.00 6.46
125 126 1.300233 CCCGCTCTCAATAGACGCC 60.300 63.158 0.00 0.00 0.00 5.68
126 127 0.102481 TTCCCGCTCTCAATAGACGC 59.898 55.000 0.00 0.00 0.00 5.19
127 128 1.841450 GTTCCCGCTCTCAATAGACG 58.159 55.000 0.00 0.00 0.00 4.18
128 129 1.404391 TCGTTCCCGCTCTCAATAGAC 59.596 52.381 0.00 0.00 0.00 2.59
129 130 1.404391 GTCGTTCCCGCTCTCAATAGA 59.596 52.381 0.00 0.00 0.00 1.98
130 131 1.536284 GGTCGTTCCCGCTCTCAATAG 60.536 57.143 0.00 0.00 0.00 1.73
131 132 0.458669 GGTCGTTCCCGCTCTCAATA 59.541 55.000 0.00 0.00 0.00 1.90
132 133 1.218316 GGTCGTTCCCGCTCTCAAT 59.782 57.895 0.00 0.00 0.00 2.57
133 134 1.750341 TTGGTCGTTCCCGCTCTCAA 61.750 55.000 0.00 0.00 34.77 3.02
134 135 2.154798 CTTGGTCGTTCCCGCTCTCA 62.155 60.000 0.00 0.00 34.77 3.27
135 136 1.446272 CTTGGTCGTTCCCGCTCTC 60.446 63.158 0.00 0.00 34.77 3.20
136 137 1.755393 AACTTGGTCGTTCCCGCTCT 61.755 55.000 0.00 0.00 34.77 4.09
137 138 0.883370 AAACTTGGTCGTTCCCGCTC 60.883 55.000 0.00 0.00 34.77 5.03
138 139 0.393820 TAAACTTGGTCGTTCCCGCT 59.606 50.000 0.00 0.00 34.77 5.52
139 140 1.228533 TTAAACTTGGTCGTTCCCGC 58.771 50.000 0.00 0.00 34.77 6.13
140 141 4.492791 AATTTAAACTTGGTCGTTCCCG 57.507 40.909 0.00 0.00 34.77 5.14
141 142 5.010314 AGGAAATTTAAACTTGGTCGTTCCC 59.990 40.000 0.00 0.00 33.91 3.97
142 143 5.918576 CAGGAAATTTAAACTTGGTCGTTCC 59.081 40.000 0.00 0.00 33.66 3.62
143 144 5.401376 GCAGGAAATTTAAACTTGGTCGTTC 59.599 40.000 0.00 0.00 0.00 3.95
144 145 5.163499 TGCAGGAAATTTAAACTTGGTCGTT 60.163 36.000 0.00 0.00 0.00 3.85
145 146 4.339814 TGCAGGAAATTTAAACTTGGTCGT 59.660 37.500 0.00 0.00 0.00 4.34
146 147 4.865776 TGCAGGAAATTTAAACTTGGTCG 58.134 39.130 0.00 0.00 0.00 4.79
147 148 5.869344 GGATGCAGGAAATTTAAACTTGGTC 59.131 40.000 0.00 0.00 0.00 4.02
148 149 5.543790 AGGATGCAGGAAATTTAAACTTGGT 59.456 36.000 0.00 0.00 0.00 3.67
149 150 5.870978 CAGGATGCAGGAAATTTAAACTTGG 59.129 40.000 0.00 0.00 0.00 3.61
150 151 6.690530 TCAGGATGCAGGAAATTTAAACTTG 58.309 36.000 0.00 0.00 34.76 3.16
151 152 6.071165 CCTCAGGATGCAGGAAATTTAAACTT 60.071 38.462 0.00 0.00 36.06 2.66
152 153 5.420104 CCTCAGGATGCAGGAAATTTAAACT 59.580 40.000 0.00 0.00 36.06 2.66
153 154 5.654497 CCTCAGGATGCAGGAAATTTAAAC 58.346 41.667 0.00 0.00 36.06 2.01
154 155 4.160252 GCCTCAGGATGCAGGAAATTTAAA 59.840 41.667 0.00 0.00 36.06 1.52
155 156 3.701040 GCCTCAGGATGCAGGAAATTTAA 59.299 43.478 0.00 0.00 36.06 1.52
156 157 3.290710 GCCTCAGGATGCAGGAAATTTA 58.709 45.455 0.00 0.00 36.06 1.40
157 158 2.105766 GCCTCAGGATGCAGGAAATTT 58.894 47.619 0.00 0.00 36.06 1.82
158 159 1.687368 GGCCTCAGGATGCAGGAAATT 60.687 52.381 0.00 0.00 36.06 1.82
159 160 0.106318 GGCCTCAGGATGCAGGAAAT 60.106 55.000 0.00 0.00 36.06 2.17
160 161 1.304282 GGCCTCAGGATGCAGGAAA 59.696 57.895 0.00 0.00 36.06 3.13
161 162 3.001514 GGCCTCAGGATGCAGGAA 58.998 61.111 0.00 0.00 36.06 3.36
162 163 3.473647 CGGCCTCAGGATGCAGGA 61.474 66.667 0.00 0.00 36.06 3.86
163 164 4.559063 CCGGCCTCAGGATGCAGG 62.559 72.222 0.00 1.92 36.76 4.85
183 184 4.329545 CCCAGTCACACCCCCACG 62.330 72.222 0.00 0.00 0.00 4.94
184 185 2.852075 TCCCAGTCACACCCCCAC 60.852 66.667 0.00 0.00 0.00 4.61
185 186 2.529136 CTCCCAGTCACACCCCCA 60.529 66.667 0.00 0.00 0.00 4.96
186 187 4.035102 GCTCCCAGTCACACCCCC 62.035 72.222 0.00 0.00 0.00 5.40
187 188 1.612442 TAGCTCCCAGTCACACCCC 60.612 63.158 0.00 0.00 0.00 4.95
188 189 1.617947 CCTAGCTCCCAGTCACACCC 61.618 65.000 0.00 0.00 0.00 4.61
189 190 0.905337 ACCTAGCTCCCAGTCACACC 60.905 60.000 0.00 0.00 0.00 4.16
190 191 0.533032 GACCTAGCTCCCAGTCACAC 59.467 60.000 0.00 0.00 0.00 3.82
191 192 0.965866 CGACCTAGCTCCCAGTCACA 60.966 60.000 0.00 0.00 0.00 3.58
192 193 1.810532 CGACCTAGCTCCCAGTCAC 59.189 63.158 0.00 0.00 0.00 3.67
193 194 2.052690 GCGACCTAGCTCCCAGTCA 61.053 63.158 0.00 0.00 0.00 3.41
194 195 2.787567 GGCGACCTAGCTCCCAGTC 61.788 68.421 0.00 0.00 37.29 3.51
195 196 2.760385 GGCGACCTAGCTCCCAGT 60.760 66.667 0.00 0.00 37.29 4.00
208 209 4.689549 TTCGGTCTCTGGGGGCGA 62.690 66.667 0.00 0.00 0.00 5.54
209 210 4.452733 GTTCGGTCTCTGGGGGCG 62.453 72.222 0.00 0.00 0.00 6.13
210 211 1.677637 CTAGTTCGGTCTCTGGGGGC 61.678 65.000 0.00 0.00 0.00 5.80
211 212 1.677637 GCTAGTTCGGTCTCTGGGGG 61.678 65.000 0.00 0.00 0.00 5.40
212 213 1.817209 GCTAGTTCGGTCTCTGGGG 59.183 63.158 0.00 0.00 0.00 4.96
213 214 1.433879 CGCTAGTTCGGTCTCTGGG 59.566 63.158 0.00 0.00 0.00 4.45
214 215 1.226717 GCGCTAGTTCGGTCTCTGG 60.227 63.158 0.00 0.00 0.00 3.86
215 216 1.226717 GGCGCTAGTTCGGTCTCTG 60.227 63.158 7.64 0.00 0.00 3.35
216 217 2.762234 CGGCGCTAGTTCGGTCTCT 61.762 63.158 7.64 0.00 0.00 3.10
217 218 2.278013 CGGCGCTAGTTCGGTCTC 60.278 66.667 7.64 0.00 0.00 3.36
218 219 3.823330 CCGGCGCTAGTTCGGTCT 61.823 66.667 7.64 0.00 39.04 3.85
240 241 1.415672 TAAATAGAGCGGCCTGGGGG 61.416 60.000 0.00 0.00 0.00 5.40
241 242 0.035458 CTAAATAGAGCGGCCTGGGG 59.965 60.000 0.00 0.00 0.00 4.96
242 243 0.035458 CCTAAATAGAGCGGCCTGGG 59.965 60.000 0.00 0.00 0.00 4.45
243 244 0.603975 GCCTAAATAGAGCGGCCTGG 60.604 60.000 0.00 0.00 36.56 4.45
244 245 0.946221 CGCCTAAATAGAGCGGCCTG 60.946 60.000 0.00 0.00 45.88 4.85
245 246 1.367840 CGCCTAAATAGAGCGGCCT 59.632 57.895 0.00 0.00 45.88 5.19
246 247 3.952811 CGCCTAAATAGAGCGGCC 58.047 61.111 12.51 0.00 45.88 6.13
250 251 0.603975 CCAGGGCGCCTAAATAGAGC 60.604 60.000 28.56 5.83 29.64 4.09
251 252 0.035458 CCCAGGGCGCCTAAATAGAG 59.965 60.000 28.56 6.58 29.64 2.43
252 253 1.415672 CCCCAGGGCGCCTAAATAGA 61.416 60.000 28.56 0.00 29.64 1.98
253 254 1.073199 CCCCAGGGCGCCTAAATAG 59.927 63.158 28.56 10.47 29.64 1.73
254 255 2.457323 CCCCCAGGGCGCCTAAATA 61.457 63.158 28.56 0.00 35.35 1.40
255 256 3.820843 CCCCCAGGGCGCCTAAAT 61.821 66.667 28.56 7.33 35.35 1.40
271 272 4.162690 ATCTCCAGCCGTTCGCCC 62.163 66.667 0.00 0.00 38.78 6.13
272 273 2.892425 CATCTCCAGCCGTTCGCC 60.892 66.667 0.00 0.00 38.78 5.54
273 274 2.892425 CCATCTCCAGCCGTTCGC 60.892 66.667 0.00 0.00 37.98 4.70
274 275 2.892425 GCCATCTCCAGCCGTTCG 60.892 66.667 0.00 0.00 0.00 3.95
275 276 2.514824 GGCCATCTCCAGCCGTTC 60.515 66.667 0.00 0.00 39.87 3.95
280 281 0.179009 TGCATTAGGCCATCTCCAGC 60.179 55.000 5.01 0.00 43.89 4.85
281 282 1.893544 CTGCATTAGGCCATCTCCAG 58.106 55.000 5.01 1.53 43.89 3.86
282 283 0.179009 GCTGCATTAGGCCATCTCCA 60.179 55.000 5.01 0.00 43.89 3.86
283 284 0.110104 AGCTGCATTAGGCCATCTCC 59.890 55.000 5.01 0.00 43.89 3.71
284 285 1.236628 CAGCTGCATTAGGCCATCTC 58.763 55.000 5.01 0.00 43.89 2.75
285 286 0.549950 ACAGCTGCATTAGGCCATCT 59.450 50.000 15.27 0.00 43.89 2.90
286 287 2.149578 CTACAGCTGCATTAGGCCATC 58.850 52.381 15.27 0.00 43.89 3.51
287 288 1.816961 GCTACAGCTGCATTAGGCCAT 60.817 52.381 15.27 0.00 43.89 4.40
288 289 0.464373 GCTACAGCTGCATTAGGCCA 60.464 55.000 15.27 0.00 43.89 5.36
289 290 2.325218 GCTACAGCTGCATTAGGCC 58.675 57.895 15.27 0.00 43.89 5.19
314 315 4.500887 GCCAGCGGACAGTAGTATTAATCA 60.501 45.833 0.00 0.00 0.00 2.57
318 319 1.335810 CGCCAGCGGACAGTAGTATTA 59.664 52.381 3.61 0.00 35.56 0.98
499 504 4.629200 CCTCTCGTTCATCAGAAAGAAAGG 59.371 45.833 0.42 0.42 41.73 3.11
516 525 1.333636 ACCTGCAATCTCCCCTCTCG 61.334 60.000 0.00 0.00 0.00 4.04
577 593 4.578516 TGATAAGCCAAAATGATACCCGTG 59.421 41.667 0.00 0.00 0.00 4.94
593 609 1.875514 TGCAATCGCCAGATGATAAGC 59.124 47.619 0.00 0.00 37.14 3.09
594 610 3.396560 TCTGCAATCGCCAGATGATAAG 58.603 45.455 0.00 0.00 37.14 1.73
595 611 3.473923 TCTGCAATCGCCAGATGATAA 57.526 42.857 0.00 0.00 37.14 1.75
596 612 3.690475 ATCTGCAATCGCCAGATGATA 57.310 42.857 3.33 0.00 35.80 2.15
597 613 2.563261 ATCTGCAATCGCCAGATGAT 57.437 45.000 3.33 0.00 35.80 2.45
598 614 2.289257 CCTATCTGCAATCGCCAGATGA 60.289 50.000 12.70 0.00 36.94 2.92
599 615 2.074576 CCTATCTGCAATCGCCAGATG 58.925 52.381 12.70 4.71 36.94 2.90
600 616 1.973515 TCCTATCTGCAATCGCCAGAT 59.026 47.619 8.70 8.70 38.61 2.90
601 617 1.413118 TCCTATCTGCAATCGCCAGA 58.587 50.000 0.00 0.00 37.32 3.86
602 618 2.245159 TTCCTATCTGCAATCGCCAG 57.755 50.000 0.00 0.00 37.32 4.85
603 619 2.936919 ATTCCTATCTGCAATCGCCA 57.063 45.000 0.00 0.00 37.32 5.69
604 620 3.406764 AGAATTCCTATCTGCAATCGCC 58.593 45.455 0.65 0.00 37.32 5.54
605 621 3.122613 CGAGAATTCCTATCTGCAATCGC 59.877 47.826 0.65 0.00 39.24 4.58
606 622 3.677121 CCGAGAATTCCTATCTGCAATCG 59.323 47.826 0.65 0.80 0.00 3.34
669 689 1.460497 GTCCCCTCCTCTGGATCCC 60.460 68.421 9.90 0.00 32.20 3.85
736 760 2.361104 GGCCGCTGGTTGATTCCA 60.361 61.111 0.00 0.00 36.00 3.53
737 761 2.361104 TGGCCGCTGGTTGATTCC 60.361 61.111 0.00 0.00 0.00 3.01
738 762 3.056313 GCTGGCCGCTGGTTGATTC 62.056 63.158 11.61 0.00 35.14 2.52
739 763 3.064324 GCTGGCCGCTGGTTGATT 61.064 61.111 11.61 0.00 35.14 2.57
761 785 0.250209 CAAGATCTGCTAGCCGCCAT 60.250 55.000 13.29 0.00 38.05 4.40
826 850 5.447818 CGGCATCTCACCTTACAAATTTCTC 60.448 44.000 0.00 0.00 0.00 2.87
869 893 8.674263 ATGAAATGAGATGAAATGGAGTACTC 57.326 34.615 14.87 14.87 0.00 2.59
873 897 7.504911 CCCTTATGAAATGAGATGAAATGGAGT 59.495 37.037 0.00 0.00 30.21 3.85
874 898 7.722728 TCCCTTATGAAATGAGATGAAATGGAG 59.277 37.037 0.00 0.00 30.21 3.86
875 899 7.585440 TCCCTTATGAAATGAGATGAAATGGA 58.415 34.615 0.00 0.00 30.21 3.41
876 900 7.828508 TCCCTTATGAAATGAGATGAAATGG 57.171 36.000 0.00 0.00 30.21 3.16
877 901 8.521176 GGATCCCTTATGAAATGAGATGAAATG 58.479 37.037 0.00 0.00 30.21 2.32
878 902 7.673082 GGGATCCCTTATGAAATGAGATGAAAT 59.327 37.037 24.69 0.00 30.21 2.17
879 903 7.006509 GGGATCCCTTATGAAATGAGATGAAA 58.993 38.462 24.69 0.00 30.21 2.69
880 904 6.333702 AGGGATCCCTTATGAAATGAGATGAA 59.666 38.462 28.96 0.00 45.70 2.57
881 905 5.853922 AGGGATCCCTTATGAAATGAGATGA 59.146 40.000 28.96 0.00 45.70 2.92
882 906 6.137104 AGGGATCCCTTATGAAATGAGATG 57.863 41.667 28.96 0.00 45.70 2.90
917 941 1.887854 TGCATGCATTCATTATCCCCG 59.112 47.619 18.46 0.00 0.00 5.73
1378 1417 1.267806 GATGCACAGGTTGGTGTTCTG 59.732 52.381 0.00 0.00 40.89 3.02
1623 1662 3.133183 GGTAGAGGAACTTCCAGATGACC 59.867 52.174 10.57 6.20 41.55 4.02
1641 1680 1.664321 CCGTCTTGTCCTCCCGGTAG 61.664 65.000 0.00 0.00 34.10 3.18
1809 1848 1.153086 GGCCAGCATGTACCAGAGG 60.153 63.158 0.00 0.00 31.25 3.69
2070 2109 2.567049 GAGGTGGTCACGTCCGAG 59.433 66.667 11.43 0.00 39.54 4.63
2075 2114 0.106149 GTCTTTGGAGGTGGTCACGT 59.894 55.000 0.00 0.00 0.00 4.49
2190 2233 6.367969 ACTGTTCGACCACATAAATTAGTGAC 59.632 38.462 7.06 0.00 37.97 3.67
2200 2243 1.814394 AGCGTACTGTTCGACCACATA 59.186 47.619 11.07 0.00 0.00 2.29
2203 2246 1.467035 CCTAGCGTACTGTTCGACCAC 60.467 57.143 11.07 0.00 0.00 4.16
2333 2401 7.439955 GGCTTAAGCTAGTAAAGAAGAAGGATC 59.560 40.741 25.88 0.00 41.70 3.36
2337 2405 7.436970 GCTAGGCTTAAGCTAGTAAAGAAGAAG 59.563 40.741 25.88 5.42 41.70 2.85
2338 2406 7.266400 GCTAGGCTTAAGCTAGTAAAGAAGAA 58.734 38.462 25.88 0.00 41.70 2.52
2379 2447 0.869880 CGTCTCGTCAGTGCAACACA 60.870 55.000 0.00 0.00 41.43 3.72
2380 2448 0.594028 TCGTCTCGTCAGTGCAACAC 60.594 55.000 0.00 0.00 41.43 3.32
2381 2449 0.313987 ATCGTCTCGTCAGTGCAACA 59.686 50.000 0.00 0.00 41.43 3.33
2383 2451 0.454452 CGATCGTCTCGTCAGTGCAA 60.454 55.000 7.03 0.00 42.56 4.08
2824 2903 2.260869 GCTGCGGTTGAAGAAGCCA 61.261 57.895 0.00 0.00 0.00 4.75
3390 3474 4.973168 AGGAACACTGTGCTATTTCTTGA 58.027 39.130 7.90 0.00 0.00 3.02
3511 3595 4.273724 TGCTTTACGTGCAACACTTATCAA 59.726 37.500 0.00 0.00 37.51 2.57
3529 3613 2.056094 GCAGAATTGCTTCGTGCTTT 57.944 45.000 5.00 0.01 46.95 3.51
3530 3614 3.780925 GCAGAATTGCTTCGTGCTT 57.219 47.368 5.00 0.00 46.95 3.91
3566 3650 7.506114 TGTCATCCTCAGTTAACTAAAGTTGT 58.494 34.615 8.04 0.00 38.90 3.32
3593 3677 8.715191 AAAGTTGTCATGCTTCACAATTAAAA 57.285 26.923 1.52 0.00 35.05 1.52
3598 3682 5.068198 ACAGAAAGTTGTCATGCTTCACAAT 59.932 36.000 1.52 0.00 35.05 2.71
3673 3757 4.695455 ACACCGTCCTGACATTTTCATAAG 59.305 41.667 0.00 0.00 32.17 1.73
3678 3762 4.062991 AGTAACACCGTCCTGACATTTTC 58.937 43.478 0.00 0.00 0.00 2.29
3683 3767 1.001048 CGAAGTAACACCGTCCTGACA 60.001 52.381 0.00 0.00 0.00 3.58
3684 3768 1.000938 ACGAAGTAACACCGTCCTGAC 60.001 52.381 0.00 0.00 41.94 3.51
3688 3772 1.287041 GGCACGAAGTAACACCGTCC 61.287 60.000 0.00 0.00 41.61 4.79
3690 3774 0.877213 GTGGCACGAAGTAACACCGT 60.877 55.000 0.00 0.00 41.61 4.83
3700 3784 3.326836 TGATAAGTGATGTGGCACGAA 57.673 42.857 13.77 0.00 43.42 3.85
3729 3819 5.031578 GCAATGAGACACGTTGTTTTACAA 58.968 37.500 6.68 0.00 44.58 2.41
3731 3821 3.972502 GGCAATGAGACACGTTGTTTTAC 59.027 43.478 6.68 0.00 44.58 2.01
3732 3822 3.303461 CGGCAATGAGACACGTTGTTTTA 60.303 43.478 6.68 0.00 44.58 1.52
3744 3834 5.917462 TCTCTAATGAAATCGGCAATGAGA 58.083 37.500 0.00 0.00 0.00 3.27
3748 3838 4.273480 CGGTTCTCTAATGAAATCGGCAAT 59.727 41.667 0.00 0.00 0.00 3.56
3752 3842 3.194861 TGCGGTTCTCTAATGAAATCGG 58.805 45.455 0.00 0.00 0.00 4.18
3771 3861 0.592247 CGTTCGCCCATTAGCATTGC 60.592 55.000 0.00 0.00 0.00 3.56
3793 3883 2.551071 CCACTCAGAGTTCCTTCCCAAC 60.551 54.545 0.00 0.00 0.00 3.77
3808 3899 3.601685 TGAGCGCACGTCCACTCA 61.602 61.111 11.47 0.00 36.84 3.41
3809 3900 3.106407 GTGAGCGCACGTCCACTC 61.106 66.667 11.47 0.00 34.94 3.51
3818 3909 1.733912 GATCAGTCAATTGTGAGCGCA 59.266 47.619 11.47 0.00 33.27 6.09
3819 3910 1.267235 CGATCAGTCAATTGTGAGCGC 60.267 52.381 19.35 0.00 44.52 5.92
3820 3911 2.708548 CGATCAGTCAATTGTGAGCG 57.291 50.000 18.28 18.28 44.98 5.03
3821 3912 3.515630 TCTCGATCAGTCAATTGTGAGC 58.484 45.455 5.13 4.85 33.27 4.26
3838 3929 2.065993 ACTGACACCGTTTGATCTCG 57.934 50.000 0.00 0.00 0.00 4.04
3870 3961 8.798859 ATCAGCAATGTCTACATAGAGTTTTT 57.201 30.769 0.00 0.00 35.10 1.94
3874 3965 7.723616 AGACTATCAGCAATGTCTACATAGAGT 59.276 37.037 0.00 0.00 37.92 3.24
3886 3977 6.691818 GCAATTTCTTCAGACTATCAGCAATG 59.308 38.462 0.00 0.00 0.00 2.82
3891 3982 5.065731 GGTGGCAATTTCTTCAGACTATCAG 59.934 44.000 0.00 0.00 0.00 2.90
3894 3985 4.018050 AGGGTGGCAATTTCTTCAGACTAT 60.018 41.667 0.00 0.00 0.00 2.12
3901 3992 2.751806 CTGAGAGGGTGGCAATTTCTTC 59.248 50.000 0.00 0.00 0.00 2.87
3920 4011 0.812811 CATGTGTCGGCCCTGATCTG 60.813 60.000 0.00 0.00 0.00 2.90
3926 4017 2.894257 TTGCTCATGTGTCGGCCCT 61.894 57.895 0.00 0.00 0.00 5.19
3928 4019 2.690778 GGTTGCTCATGTGTCGGCC 61.691 63.158 0.00 0.00 0.00 6.13
3932 4023 1.537202 GGAACTGGTTGCTCATGTGTC 59.463 52.381 0.00 0.00 0.00 3.67
3935 4026 1.956477 GTTGGAACTGGTTGCTCATGT 59.044 47.619 6.54 0.00 0.00 3.21
3950 4041 2.027561 CACCTACAAATCCGAGGTTGGA 60.028 50.000 0.00 0.00 41.80 3.53
3951 4042 2.356135 CACCTACAAATCCGAGGTTGG 58.644 52.381 0.00 0.00 41.80 3.77
3952 4043 2.356135 CCACCTACAAATCCGAGGTTG 58.644 52.381 0.00 0.00 41.80 3.77
3953 4044 1.280998 CCCACCTACAAATCCGAGGTT 59.719 52.381 0.00 0.00 41.80 3.50
3954 4045 0.909623 CCCACCTACAAATCCGAGGT 59.090 55.000 0.00 0.00 44.65 3.85
3956 4047 0.180406 CCCCCACCTACAAATCCGAG 59.820 60.000 0.00 0.00 0.00 4.63
3957 4048 2.303043 CCCCCACCTACAAATCCGA 58.697 57.895 0.00 0.00 0.00 4.55
3958 4049 4.977393 CCCCCACCTACAAATCCG 57.023 61.111 0.00 0.00 0.00 4.18
3978 4075 9.442033 GTGCGGTAAATTACTATAAAATTCACC 57.558 33.333 2.96 3.74 33.08 4.02
3979 4076 9.150653 CGTGCGGTAAATTACTATAAAATTCAC 57.849 33.333 2.96 0.00 0.00 3.18
4000 4097 0.633733 CTTTAGCTACGTGTCGTGCG 59.366 55.000 0.00 0.00 41.39 5.34
4004 4101 1.200716 TGGGTCTTTAGCTACGTGTCG 59.799 52.381 0.00 0.00 0.00 4.35
4009 4106 2.993899 CAGTTGTGGGTCTTTAGCTACG 59.006 50.000 0.00 0.00 37.40 3.51
4028 4125 1.079543 CCTCGAGTGTTCCAGCCAG 60.080 63.158 12.31 0.00 0.00 4.85
4030 4127 2.435059 GCCTCGAGTGTTCCAGCC 60.435 66.667 12.31 0.00 0.00 4.85
4031 4128 0.884704 TTTGCCTCGAGTGTTCCAGC 60.885 55.000 12.31 6.16 0.00 4.85
4037 4140 1.608590 CCATGTTTTTGCCTCGAGTGT 59.391 47.619 12.31 0.00 0.00 3.55
4039 4142 2.270352 TCCATGTTTTTGCCTCGAGT 57.730 45.000 12.31 0.00 0.00 4.18
4043 4146 8.947055 ATATGTTTTATCCATGTTTTTGCCTC 57.053 30.769 0.00 0.00 0.00 4.70
4066 4169 5.045668 TGCTAGTGTTCGACGTTGTAATA 57.954 39.130 1.96 0.00 0.00 0.98
4078 4181 5.452777 GTGAGATGGTTTTTGCTAGTGTTC 58.547 41.667 0.00 0.00 0.00 3.18
4093 4196 5.301045 ACATGATGCAAAATAGGTGAGATGG 59.699 40.000 0.00 0.00 0.00 3.51
4094 4197 6.206498 CACATGATGCAAAATAGGTGAGATG 58.794 40.000 0.00 0.00 0.00 2.90
4096 4199 5.823209 CACATGATGCAAAATAGGTGAGA 57.177 39.130 0.00 0.00 0.00 3.27
4159 4277 3.345508 AACTTGAACGGAGGGAATACC 57.654 47.619 0.00 0.00 40.67 2.73
4163 4281 4.020839 CCTAGTAAACTTGAACGGAGGGAA 60.021 45.833 0.00 0.00 0.00 3.97
4169 4287 2.027469 AGGGCCTAGTAAACTTGAACGG 60.027 50.000 2.82 0.00 0.00 4.44
4173 4291 1.829222 CGGAGGGCCTAGTAAACTTGA 59.171 52.381 5.73 0.00 0.00 3.02
4175 4293 1.829849 GTCGGAGGGCCTAGTAAACTT 59.170 52.381 5.73 0.00 0.00 2.66
4176 4294 1.006878 AGTCGGAGGGCCTAGTAAACT 59.993 52.381 5.73 3.20 0.00 2.66
4182 4300 2.101082 GAGTTTTAGTCGGAGGGCCTAG 59.899 54.545 5.73 3.63 0.00 3.02
4192 4310 4.243270 CCTTGGTACCTGAGTTTTAGTCG 58.757 47.826 14.36 0.00 0.00 4.18
4194 4312 3.393278 TGCCTTGGTACCTGAGTTTTAGT 59.607 43.478 14.36 0.00 0.00 2.24
4195 4313 4.015872 TGCCTTGGTACCTGAGTTTTAG 57.984 45.455 14.36 0.00 0.00 1.85
4196 4314 4.139038 GTTGCCTTGGTACCTGAGTTTTA 58.861 43.478 14.36 0.00 0.00 1.52
4197 4315 2.956333 GTTGCCTTGGTACCTGAGTTTT 59.044 45.455 14.36 0.00 0.00 2.43
4198 4316 2.583143 GTTGCCTTGGTACCTGAGTTT 58.417 47.619 14.36 0.00 0.00 2.66
4199 4317 1.202891 GGTTGCCTTGGTACCTGAGTT 60.203 52.381 14.36 0.00 0.00 3.01
4213 4331 9.067986 AGTAGCATCTTAAATTAATAGGTTGCC 57.932 33.333 0.00 0.00 31.54 4.52
4229 4347 7.222999 GCGATTTACTGTCTAAAGTAGCATCTT 59.777 37.037 0.00 0.00 34.24 2.40
4231 4349 6.345093 CGCGATTTACTGTCTAAAGTAGCATC 60.345 42.308 0.00 0.00 34.24 3.91
4244 4362 1.720805 TGATGCACGCGATTTACTGT 58.279 45.000 15.93 0.00 0.00 3.55
4245 4363 2.804421 TTGATGCACGCGATTTACTG 57.196 45.000 15.93 0.00 0.00 2.74
4252 4370 0.940833 TCAAGTTTTGATGCACGCGA 59.059 45.000 15.93 0.00 34.08 5.87
4262 4380 7.935338 ACAAGCAATGACTAATCAAGTTTTG 57.065 32.000 0.00 0.00 39.07 2.44
4267 4385 8.589629 GCAATTAACAAGCAATGACTAATCAAG 58.410 33.333 0.00 0.00 38.69 3.02
4268 4386 7.545265 GGCAATTAACAAGCAATGACTAATCAA 59.455 33.333 0.00 0.00 38.69 2.57
4277 4395 7.649306 GTCTTATAGGGCAATTAACAAGCAATG 59.351 37.037 0.00 0.00 0.00 2.82
4279 4397 6.183360 CGTCTTATAGGGCAATTAACAAGCAA 60.183 38.462 0.00 0.00 0.00 3.91
4303 4421 3.058160 CCAGCTGAGCCAAACCCG 61.058 66.667 17.39 0.00 0.00 5.28
4304 4422 1.676967 CTCCAGCTGAGCCAAACCC 60.677 63.158 17.39 0.00 33.47 4.11
4305 4423 3.993535 CTCCAGCTGAGCCAAACC 58.006 61.111 17.39 0.00 33.47 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.