Multiple sequence alignment - TraesCS5B01G374700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G374700 chr5B 100.000 2468 0 0 1 2468 551800384 551797917 0.000000e+00 4558.0
1 TraesCS5B01G374700 chr5B 91.312 1128 46 16 998 2095 551764843 551763738 0.000000e+00 1493.0
2 TraesCS5B01G374700 chr5B 90.818 1002 50 17 553 1549 551740792 551739828 0.000000e+00 1303.0
3 TraesCS5B01G374700 chr5B 85.207 845 64 35 97 925 551768204 551767405 0.000000e+00 811.0
4 TraesCS5B01G374700 chr5B 91.364 440 21 8 1572 2011 551739695 551739273 9.830000e-164 586.0
5 TraesCS5B01G374700 chr5B 87.560 209 23 2 2260 2468 551700613 551700408 3.170000e-59 239.0
6 TraesCS5B01G374700 chr5B 89.080 174 17 1 2096 2267 551738749 551738576 5.350000e-52 215.0
7 TraesCS5B01G374700 chr5B 90.909 99 9 0 2 100 551773774 551773676 1.540000e-27 134.0
8 TraesCS5B01G374700 chr5B 98.113 53 1 0 2008 2060 551739218 551739166 2.610000e-15 93.5
9 TraesCS5B01G374700 chr5B 100.000 36 0 0 939 974 551764878 551764843 1.580000e-07 67.6
10 TraesCS5B01G374700 chr5A 90.316 981 54 13 575 1547 570789454 570788507 0.000000e+00 1247.0
11 TraesCS5B01G374700 chr5A 83.878 980 87 38 907 1843 570784986 570784035 0.000000e+00 869.0
12 TraesCS5B01G374700 chr5A 88.473 668 47 11 888 1549 570792023 570791380 0.000000e+00 780.0
13 TraesCS5B01G374700 chr5A 89.474 209 10 8 648 853 570785179 570784980 1.130000e-63 254.0
14 TraesCS5B01G374700 chr5A 87.310 197 12 8 110 301 570789725 570789537 1.920000e-51 213.0
15 TraesCS5B01G374700 chr5A 87.234 94 8 1 1 94 570786837 570786748 1.210000e-18 104.0
16 TraesCS5B01G374700 chr5A 95.349 43 2 0 230 272 570786630 570786588 4.400000e-08 69.4
17 TraesCS5B01G374700 chr5A 100.000 34 0 0 1561 1594 570791345 570791312 2.050000e-06 63.9
18 TraesCS5B01G374700 chr5D 88.817 930 60 22 553 1447 451971103 451970183 0.000000e+00 1101.0
19 TraesCS5B01G374700 chr5D 82.334 1268 99 51 619 1843 451955939 451954754 0.000000e+00 985.0
20 TraesCS5B01G374700 chr5D 85.942 313 19 9 1 301 451972018 451971719 6.630000e-81 311.0
21 TraesCS5B01G374700 chr5D 82.895 76 7 1 1918 1987 451954729 451954654 2.050000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G374700 chr5B 551797917 551800384 2467 True 4558.000000 4558 100.00000 1 2468 1 chr5B.!!$R3 2467
1 TraesCS5B01G374700 chr5B 551763738 551768204 4466 True 790.533333 1493 92.17300 97 2095 3 chr5B.!!$R5 1998
2 TraesCS5B01G374700 chr5B 551738576 551740792 2216 True 549.375000 1303 92.34375 553 2267 4 chr5B.!!$R4 1714
3 TraesCS5B01G374700 chr5A 570784035 570792023 7988 True 450.037500 1247 90.25425 1 1843 8 chr5A.!!$R1 1842
4 TraesCS5B01G374700 chr5D 451970183 451972018 1835 True 706.000000 1101 87.37950 1 1447 2 chr5D.!!$R2 1446
5 TraesCS5B01G374700 chr5D 451954654 451955939 1285 True 524.450000 985 82.61450 619 1987 2 chr5D.!!$R1 1368

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 45 0.249911 AGAAGCGAGCGTGAAGGTTT 60.25 50.0 0.0 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1969 11483 0.76489 AAGCTAGGAACACTGTGGCA 59.235 50.0 13.09 0.0 0.0 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 37 1.746220 AGATGTTCTAGAAGCGAGCGT 59.254 47.619 5.12 0.00 0.00 5.07
42 45 0.249911 AGAAGCGAGCGTGAAGGTTT 60.250 50.000 0.00 0.00 0.00 3.27
77 2267 2.038387 GGCCTACGACACAATTGGAT 57.962 50.000 10.83 0.00 0.00 3.41
108 2326 4.994471 TGCCAGTGTCAGCTGCCG 62.994 66.667 9.47 0.00 35.28 5.69
122 2340 1.067199 CTGCCGCGAATTTTCACAGC 61.067 55.000 8.23 0.00 0.00 4.40
125 2343 1.206578 CGCGAATTTTCACAGCGGT 59.793 52.632 0.00 0.00 46.06 5.68
130 2349 2.734606 CGAATTTTCACAGCGGTGTAGA 59.265 45.455 21.41 16.60 45.45 2.59
133 2352 4.946784 ATTTTCACAGCGGTGTAGAATC 57.053 40.909 21.41 0.00 45.45 2.52
134 2353 3.678056 TTTCACAGCGGTGTAGAATCT 57.322 42.857 21.41 0.00 45.45 2.40
166 2388 2.232696 TGTCCGAGCAAGTGCAGTATAA 59.767 45.455 6.00 0.00 45.16 0.98
176 2398 7.207383 AGCAAGTGCAGTATAAATACATACGA 58.793 34.615 6.00 0.00 45.16 3.43
306 2913 8.202461 TGACGAATACCAGGGATAATAATCTT 57.798 34.615 0.00 0.00 32.29 2.40
307 2914 9.316594 TGACGAATACCAGGGATAATAATCTTA 57.683 33.333 0.00 0.00 32.29 2.10
308 2915 9.583765 GACGAATACCAGGGATAATAATCTTAC 57.416 37.037 0.00 0.00 32.29 2.34
331 2938 1.056660 AGCCCTTCCTGTCTTTTCGA 58.943 50.000 0.00 0.00 0.00 3.71
340 2949 5.677319 TCCTGTCTTTTCGATACTCCATT 57.323 39.130 0.00 0.00 0.00 3.16
450 3064 8.911247 CAAATTCTTTGTAGGTAACCTAATGC 57.089 34.615 0.00 0.00 37.91 3.56
528 3142 3.420893 AGAAACATGATCTCCCGCAAAA 58.579 40.909 0.00 0.00 0.00 2.44
636 3279 4.518970 GTGAGGCTGTTGTAAATGGAAGAA 59.481 41.667 0.00 0.00 0.00 2.52
657 3302 4.455917 AAGCGACGTCGTTTTCATTTTA 57.544 36.364 35.48 0.00 39.71 1.52
665 3313 9.139726 CGACGTCGTTTTCATTTTATATTAAGG 57.860 33.333 29.08 0.00 34.11 2.69
736 3392 9.640952 TTTCAAAAGGGATAAAAAGAGAGAGAA 57.359 29.630 0.00 0.00 0.00 2.87
737 3393 8.854614 TCAAAAGGGATAAAAAGAGAGAGAAG 57.145 34.615 0.00 0.00 0.00 2.85
863 3523 2.108952 ACATTCTGGGAAAGCTCAACCT 59.891 45.455 0.00 0.00 0.00 3.50
864 3524 2.568623 TTCTGGGAAAGCTCAACCTC 57.431 50.000 0.00 0.00 0.00 3.85
865 3525 0.693049 TCTGGGAAAGCTCAACCTCC 59.307 55.000 0.00 0.00 0.00 4.30
866 3526 0.674895 CTGGGAAAGCTCAACCTCCG 60.675 60.000 0.00 0.00 0.00 4.63
918 3582 1.682684 GAAGGCTCTGGACCGGAGA 60.683 63.158 31.11 7.91 39.05 3.71
973 6155 1.002746 TAGTTCGCTGGCATTGGCA 60.003 52.632 12.78 12.78 43.71 4.92
1507 10891 1.202076 GCTGCTTGTTAGGATTCGTGC 60.202 52.381 0.00 0.00 0.00 5.34
1551 10959 4.060038 GCATTGGGCGCTTGCAGT 62.060 61.111 19.29 0.00 41.71 4.40
1616 11112 6.472163 CCAAAGGAAATATTGTATTGTCACGC 59.528 38.462 0.00 0.00 0.00 5.34
1707 11209 1.080501 ACACACAGGCGATCAGACG 60.081 57.895 0.00 0.00 0.00 4.18
1800 11307 2.103042 GCAAGAGCGAGGCGACATT 61.103 57.895 0.00 0.00 0.00 2.71
1850 11358 1.476891 ACGTCGACTGCCATCACTAAT 59.523 47.619 14.70 0.00 0.00 1.73
1851 11359 2.686405 ACGTCGACTGCCATCACTAATA 59.314 45.455 14.70 0.00 0.00 0.98
1852 11360 3.129813 ACGTCGACTGCCATCACTAATAA 59.870 43.478 14.70 0.00 0.00 1.40
1853 11361 3.486108 CGTCGACTGCCATCACTAATAAC 59.514 47.826 14.70 0.00 0.00 1.89
1854 11362 4.683832 GTCGACTGCCATCACTAATAACT 58.316 43.478 8.70 0.00 0.00 2.24
1855 11363 4.504461 GTCGACTGCCATCACTAATAACTG 59.496 45.833 8.70 0.00 0.00 3.16
1856 11364 3.804325 CGACTGCCATCACTAATAACTGG 59.196 47.826 0.00 0.00 0.00 4.00
1857 11365 4.680708 CGACTGCCATCACTAATAACTGGT 60.681 45.833 0.00 0.00 0.00 4.00
1969 11483 1.931172 CGTTGACTTTGACACGTTCCT 59.069 47.619 0.00 0.00 0.00 3.36
2050 11621 5.964958 TTCAAATCTGGTGAGAAACATCC 57.035 39.130 0.00 0.00 0.00 3.51
2106 12070 8.383175 AGACCATCTGGAAATTAAGAAACAGTA 58.617 33.333 2.55 0.00 38.94 2.74
2110 12074 9.442047 CATCTGGAAATTAAGAAACAGTAGAGT 57.558 33.333 0.00 0.00 0.00 3.24
2121 12085 6.075984 AGAAACAGTAGAGTACTCCCTTTGA 58.924 40.000 19.38 0.00 36.76 2.69
2125 12089 5.654650 ACAGTAGAGTACTCCCTTTGATCTG 59.345 44.000 19.38 15.86 36.76 2.90
2186 12150 1.458064 CGTACTGAAACCGCGTCAATT 59.542 47.619 4.92 0.00 0.00 2.32
2192 12156 4.915085 ACTGAAACCGCGTCAATTAATTTG 59.085 37.500 4.92 0.00 36.61 2.32
2196 12160 7.306213 TGAAACCGCGTCAATTAATTTGAATA 58.694 30.769 4.92 0.00 45.71 1.75
2203 12167 6.438763 CGTCAATTAATTTGAATAGGAGGGC 58.561 40.000 0.00 0.00 45.71 5.19
2258 12224 3.384168 TGTGTCTCTATTAGGGCATGGT 58.616 45.455 0.00 0.00 0.00 3.55
2263 12229 4.037222 TCTCTATTAGGGCATGGTCAACA 58.963 43.478 0.00 0.00 0.00 3.33
2267 12233 4.796110 ATTAGGGCATGGTCAACAGTAT 57.204 40.909 0.00 0.00 0.00 2.12
2268 12234 2.425143 AGGGCATGGTCAACAGTATG 57.575 50.000 0.00 0.00 46.00 2.39
2269 12235 0.740737 GGGCATGGTCAACAGTATGC 59.259 55.000 0.00 0.00 42.53 3.14
2271 12237 0.740737 GCATGGTCAACAGTATGCCC 59.259 55.000 0.00 0.00 42.53 5.36
2272 12238 1.392589 CATGGTCAACAGTATGCCCC 58.607 55.000 0.00 0.00 42.53 5.80
2273 12239 0.998928 ATGGTCAACAGTATGCCCCA 59.001 50.000 0.00 0.00 42.53 4.96
2274 12240 0.774276 TGGTCAACAGTATGCCCCAA 59.226 50.000 0.00 0.00 42.53 4.12
2275 12241 1.271871 TGGTCAACAGTATGCCCCAAG 60.272 52.381 0.00 0.00 42.53 3.61
2276 12242 1.463674 GTCAACAGTATGCCCCAAGG 58.536 55.000 0.00 0.00 42.53 3.61
2278 12244 0.039618 CAACAGTATGCCCCAAGGGT 59.960 55.000 4.11 0.00 46.51 4.34
2279 12245 0.039618 AACAGTATGCCCCAAGGGTG 59.960 55.000 4.11 0.00 46.51 4.61
2280 12246 1.754234 CAGTATGCCCCAAGGGTGC 60.754 63.158 4.11 7.92 46.51 5.01
2281 12247 1.930656 AGTATGCCCCAAGGGTGCT 60.931 57.895 16.23 0.66 46.51 4.40
2282 12248 0.623324 AGTATGCCCCAAGGGTGCTA 60.623 55.000 16.23 6.66 46.51 3.49
2283 12249 0.465642 GTATGCCCCAAGGGTGCTAC 60.466 60.000 16.23 12.59 46.51 3.58
2284 12250 1.641552 TATGCCCCAAGGGTGCTACC 61.642 60.000 16.23 0.00 46.51 3.18
2293 12259 2.513897 GGTGCTACCCCGCATGTC 60.514 66.667 0.00 0.00 42.62 3.06
2294 12260 2.267642 GTGCTACCCCGCATGTCA 59.732 61.111 0.00 0.00 42.62 3.58
2295 12261 1.815421 GTGCTACCCCGCATGTCAG 60.815 63.158 0.00 0.00 42.62 3.51
2296 12262 2.897350 GCTACCCCGCATGTCAGC 60.897 66.667 0.00 0.00 0.00 4.26
2297 12263 2.903357 CTACCCCGCATGTCAGCT 59.097 61.111 0.00 0.00 0.00 4.24
2298 12264 2.028125 GCTACCCCGCATGTCAGCTA 62.028 60.000 0.00 0.00 0.00 3.32
2299 12265 0.032678 CTACCCCGCATGTCAGCTAG 59.967 60.000 0.00 0.00 0.00 3.42
2300 12266 1.399744 TACCCCGCATGTCAGCTAGG 61.400 60.000 0.00 0.00 0.00 3.02
2301 12267 2.590007 CCCGCATGTCAGCTAGGC 60.590 66.667 0.00 0.00 0.00 3.93
2302 12268 2.503061 CCGCATGTCAGCTAGGCT 59.497 61.111 0.00 0.00 40.77 4.58
2303 12269 1.593750 CCGCATGTCAGCTAGGCTC 60.594 63.158 0.00 0.00 36.40 4.70
2304 12270 1.948138 CGCATGTCAGCTAGGCTCG 60.948 63.158 0.00 0.00 36.40 5.03
2305 12271 1.593750 GCATGTCAGCTAGGCTCGG 60.594 63.158 0.00 0.00 36.40 4.63
2306 12272 2.021068 GCATGTCAGCTAGGCTCGGA 62.021 60.000 0.00 0.00 36.40 4.55
2307 12273 0.678395 CATGTCAGCTAGGCTCGGAT 59.322 55.000 0.00 0.00 36.40 4.18
2308 12274 0.678395 ATGTCAGCTAGGCTCGGATG 59.322 55.000 0.00 0.00 36.40 3.51
2309 12275 1.300542 GTCAGCTAGGCTCGGATGC 60.301 63.158 0.00 0.00 36.40 3.91
2317 12283 3.869272 GCTCGGATGCCAAGCGTG 61.869 66.667 0.00 0.00 0.00 5.34
2318 12284 2.125552 CTCGGATGCCAAGCGTGA 60.126 61.111 0.00 0.00 0.00 4.35
2319 12285 1.741401 CTCGGATGCCAAGCGTGAA 60.741 57.895 0.00 0.00 0.00 3.18
2320 12286 1.298157 CTCGGATGCCAAGCGTGAAA 61.298 55.000 0.00 0.00 0.00 2.69
2321 12287 1.154225 CGGATGCCAAGCGTGAAAC 60.154 57.895 0.00 0.00 0.00 2.78
2322 12288 1.851021 CGGATGCCAAGCGTGAAACA 61.851 55.000 0.00 0.00 35.74 2.83
2323 12289 0.313672 GGATGCCAAGCGTGAAACAA 59.686 50.000 0.00 0.00 35.74 2.83
2324 12290 1.269517 GGATGCCAAGCGTGAAACAAA 60.270 47.619 0.00 0.00 35.74 2.83
2325 12291 2.468831 GATGCCAAGCGTGAAACAAAA 58.531 42.857 0.00 0.00 35.74 2.44
2326 12292 1.919918 TGCCAAGCGTGAAACAAAAG 58.080 45.000 0.00 0.00 35.74 2.27
2327 12293 1.203523 TGCCAAGCGTGAAACAAAAGT 59.796 42.857 0.00 0.00 35.74 2.66
2328 12294 1.587946 GCCAAGCGTGAAACAAAAGTG 59.412 47.619 0.00 0.00 35.74 3.16
2329 12295 2.192624 CCAAGCGTGAAACAAAAGTGG 58.807 47.619 0.00 0.00 35.74 4.00
2330 12296 2.416701 CCAAGCGTGAAACAAAAGTGGT 60.417 45.455 0.00 0.00 35.74 4.16
2331 12297 3.249917 CAAGCGTGAAACAAAAGTGGTT 58.750 40.909 0.00 0.00 37.38 3.67
2332 12298 2.874849 AGCGTGAAACAAAAGTGGTTG 58.125 42.857 0.00 0.00 33.71 3.77
2333 12299 1.323235 GCGTGAAACAAAAGTGGTTGC 59.677 47.619 0.00 0.00 33.71 4.17
2334 12300 1.923864 CGTGAAACAAAAGTGGTTGCC 59.076 47.619 0.00 0.00 33.71 4.52
2335 12301 2.416701 CGTGAAACAAAAGTGGTTGCCT 60.417 45.455 0.00 0.00 33.71 4.75
2336 12302 3.186909 GTGAAACAAAAGTGGTTGCCTC 58.813 45.455 0.00 0.00 33.71 4.70
2337 12303 2.828520 TGAAACAAAAGTGGTTGCCTCA 59.171 40.909 0.00 0.00 33.71 3.86
2338 12304 2.959507 AACAAAAGTGGTTGCCTCAC 57.040 45.000 0.00 0.00 35.51 3.51
2339 12305 1.846007 ACAAAAGTGGTTGCCTCACA 58.154 45.000 0.00 0.00 37.58 3.58
2340 12306 2.175202 ACAAAAGTGGTTGCCTCACAA 58.825 42.857 0.00 0.00 37.58 3.33
2341 12307 2.564947 ACAAAAGTGGTTGCCTCACAAA 59.435 40.909 0.00 0.00 40.82 2.83
2342 12308 3.189285 CAAAAGTGGTTGCCTCACAAAG 58.811 45.455 0.00 0.00 40.82 2.77
2343 12309 2.435372 AAGTGGTTGCCTCACAAAGA 57.565 45.000 0.00 0.00 40.82 2.52
2344 12310 1.680338 AGTGGTTGCCTCACAAAGAC 58.320 50.000 0.00 0.00 40.82 3.01
2345 12311 1.064758 AGTGGTTGCCTCACAAAGACA 60.065 47.619 0.00 0.00 40.82 3.41
2346 12312 1.334869 GTGGTTGCCTCACAAAGACAG 59.665 52.381 0.00 0.00 40.82 3.51
2347 12313 1.211703 TGGTTGCCTCACAAAGACAGA 59.788 47.619 0.00 0.00 40.82 3.41
2348 12314 2.158623 TGGTTGCCTCACAAAGACAGAT 60.159 45.455 0.00 0.00 40.82 2.90
2349 12315 2.227388 GGTTGCCTCACAAAGACAGATG 59.773 50.000 0.00 0.00 40.82 2.90
2350 12316 3.141398 GTTGCCTCACAAAGACAGATGA 58.859 45.455 0.00 0.00 40.82 2.92
2351 12317 3.708403 TGCCTCACAAAGACAGATGAT 57.292 42.857 0.00 0.00 0.00 2.45
2352 12318 4.025040 TGCCTCACAAAGACAGATGATT 57.975 40.909 0.00 0.00 0.00 2.57
2353 12319 4.005650 TGCCTCACAAAGACAGATGATTC 58.994 43.478 0.00 0.00 0.00 2.52
2354 12320 4.260170 GCCTCACAAAGACAGATGATTCT 58.740 43.478 0.00 0.00 0.00 2.40
2355 12321 4.699257 GCCTCACAAAGACAGATGATTCTT 59.301 41.667 0.00 0.00 33.32 2.52
2356 12322 5.163774 GCCTCACAAAGACAGATGATTCTTC 60.164 44.000 0.00 0.00 30.55 2.87
2357 12323 6.171921 CCTCACAAAGACAGATGATTCTTCT 58.828 40.000 0.00 0.00 30.55 2.85
2358 12324 6.092396 CCTCACAAAGACAGATGATTCTTCTG 59.908 42.308 21.72 21.72 44.95 3.02
2359 12325 5.410746 TCACAAAGACAGATGATTCTTCTGC 59.589 40.000 22.74 16.99 43.57 4.26
2360 12326 5.180680 CACAAAGACAGATGATTCTTCTGCA 59.819 40.000 22.74 0.00 43.57 4.41
2361 12327 5.766670 ACAAAGACAGATGATTCTTCTGCAA 59.233 36.000 22.74 0.00 43.57 4.08
2362 12328 6.072618 ACAAAGACAGATGATTCTTCTGCAAG 60.073 38.462 22.74 13.87 43.57 4.01
2363 12329 5.417754 AGACAGATGATTCTTCTGCAAGA 57.582 39.130 22.74 0.00 43.57 3.02
2375 12341 3.071874 TCTGCAAGAGGTGGGTATTTG 57.928 47.619 0.00 0.00 38.67 2.32
2376 12342 2.094675 CTGCAAGAGGTGGGTATTTGG 58.905 52.381 0.00 0.00 34.07 3.28
2377 12343 1.272425 TGCAAGAGGTGGGTATTTGGG 60.272 52.381 0.00 0.00 0.00 4.12
2378 12344 1.959989 GCAAGAGGTGGGTATTTGGGG 60.960 57.143 0.00 0.00 0.00 4.96
2379 12345 1.638589 CAAGAGGTGGGTATTTGGGGA 59.361 52.381 0.00 0.00 0.00 4.81
2380 12346 1.596496 AGAGGTGGGTATTTGGGGAG 58.404 55.000 0.00 0.00 0.00 4.30
2381 12347 1.082194 AGAGGTGGGTATTTGGGGAGA 59.918 52.381 0.00 0.00 0.00 3.71
2382 12348 1.490910 GAGGTGGGTATTTGGGGAGAG 59.509 57.143 0.00 0.00 0.00 3.20
2383 12349 1.082194 AGGTGGGTATTTGGGGAGAGA 59.918 52.381 0.00 0.00 0.00 3.10
2384 12350 1.490910 GGTGGGTATTTGGGGAGAGAG 59.509 57.143 0.00 0.00 0.00 3.20
2385 12351 1.490910 GTGGGTATTTGGGGAGAGAGG 59.509 57.143 0.00 0.00 0.00 3.69
2386 12352 1.082194 TGGGTATTTGGGGAGAGAGGT 59.918 52.381 0.00 0.00 0.00 3.85
2387 12353 2.206223 GGGTATTTGGGGAGAGAGGTT 58.794 52.381 0.00 0.00 0.00 3.50
2388 12354 2.092375 GGGTATTTGGGGAGAGAGGTTG 60.092 54.545 0.00 0.00 0.00 3.77
2389 12355 2.576648 GGTATTTGGGGAGAGAGGTTGT 59.423 50.000 0.00 0.00 0.00 3.32
2390 12356 2.887151 ATTTGGGGAGAGAGGTTGTG 57.113 50.000 0.00 0.00 0.00 3.33
2391 12357 0.771127 TTTGGGGAGAGAGGTTGTGG 59.229 55.000 0.00 0.00 0.00 4.17
2392 12358 0.401395 TTGGGGAGAGAGGTTGTGGT 60.401 55.000 0.00 0.00 0.00 4.16
2393 12359 0.836400 TGGGGAGAGAGGTTGTGGTC 60.836 60.000 0.00 0.00 0.00 4.02
2394 12360 1.554583 GGGGAGAGAGGTTGTGGTCC 61.555 65.000 0.00 0.00 0.00 4.46
2395 12361 0.836400 GGGAGAGAGGTTGTGGTCCA 60.836 60.000 0.00 0.00 0.00 4.02
2396 12362 1.056660 GGAGAGAGGTTGTGGTCCAA 58.943 55.000 0.00 0.00 0.00 3.53
2411 12377 3.268013 GTCCAACGACCAAAAGTGATG 57.732 47.619 0.00 0.00 32.40 3.07
2412 12378 2.875933 GTCCAACGACCAAAAGTGATGA 59.124 45.455 0.00 0.00 32.40 2.92
2413 12379 3.058914 GTCCAACGACCAAAAGTGATGAG 60.059 47.826 0.00 0.00 32.40 2.90
2414 12380 3.138304 CCAACGACCAAAAGTGATGAGA 58.862 45.455 0.00 0.00 0.00 3.27
2415 12381 3.187227 CCAACGACCAAAAGTGATGAGAG 59.813 47.826 0.00 0.00 0.00 3.20
2416 12382 4.058124 CAACGACCAAAAGTGATGAGAGA 58.942 43.478 0.00 0.00 0.00 3.10
2417 12383 4.336889 ACGACCAAAAGTGATGAGAGAA 57.663 40.909 0.00 0.00 0.00 2.87
2418 12384 4.703897 ACGACCAAAAGTGATGAGAGAAA 58.296 39.130 0.00 0.00 0.00 2.52
2419 12385 4.752101 ACGACCAAAAGTGATGAGAGAAAG 59.248 41.667 0.00 0.00 0.00 2.62
2420 12386 4.991056 CGACCAAAAGTGATGAGAGAAAGA 59.009 41.667 0.00 0.00 0.00 2.52
2421 12387 5.119898 CGACCAAAAGTGATGAGAGAAAGAG 59.880 44.000 0.00 0.00 0.00 2.85
2422 12388 5.312079 ACCAAAAGTGATGAGAGAAAGAGG 58.688 41.667 0.00 0.00 0.00 3.69
2423 12389 4.699257 CCAAAAGTGATGAGAGAAAGAGGG 59.301 45.833 0.00 0.00 0.00 4.30
2424 12390 4.566426 AAAGTGATGAGAGAAAGAGGGG 57.434 45.455 0.00 0.00 0.00 4.79
2425 12391 1.836802 AGTGATGAGAGAAAGAGGGGC 59.163 52.381 0.00 0.00 0.00 5.80
2426 12392 1.556911 GTGATGAGAGAAAGAGGGGCA 59.443 52.381 0.00 0.00 0.00 5.36
2427 12393 2.172293 GTGATGAGAGAAAGAGGGGCAT 59.828 50.000 0.00 0.00 0.00 4.40
2428 12394 2.172082 TGATGAGAGAAAGAGGGGCATG 59.828 50.000 0.00 0.00 0.00 4.06
2429 12395 0.254178 TGAGAGAAAGAGGGGCATGC 59.746 55.000 9.90 9.90 0.00 4.06
2430 12396 0.545646 GAGAGAAAGAGGGGCATGCT 59.454 55.000 18.92 0.00 0.00 3.79
2431 12397 0.255318 AGAGAAAGAGGGGCATGCTG 59.745 55.000 18.92 0.00 0.00 4.41
2432 12398 0.750911 GAGAAAGAGGGGCATGCTGG 60.751 60.000 18.92 0.00 0.00 4.85
2433 12399 2.363406 AAAGAGGGGCATGCTGGC 60.363 61.111 18.92 0.00 42.88 4.85
2434 12400 4.809496 AAGAGGGGCATGCTGGCG 62.809 66.667 18.92 0.00 44.78 5.69
2442 12408 3.190849 CATGCTGGCGACGGTGAG 61.191 66.667 0.00 0.00 39.64 3.51
2451 12417 4.210304 GACGGTGAGCGCGCATTC 62.210 66.667 35.10 23.41 0.00 2.67
2454 12420 2.202878 GGTGAGCGCGCATTCCTA 60.203 61.111 35.10 9.39 0.00 2.94
2455 12421 1.595382 GGTGAGCGCGCATTCCTAT 60.595 57.895 35.10 10.81 0.00 2.57
2456 12422 1.566563 GTGAGCGCGCATTCCTATG 59.433 57.895 35.10 0.00 34.76 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.601558 AACCTTCACGCTCGCTTCTA 59.398 50.000 0.00 0.00 0.00 2.10
27 28 1.206831 GGAAAACCTTCACGCTCGC 59.793 57.895 0.00 0.00 32.75 5.03
28 29 0.512952 CAGGAAAACCTTCACGCTCG 59.487 55.000 0.00 0.00 32.75 5.03
29 30 0.875059 CCAGGAAAACCTTCACGCTC 59.125 55.000 0.00 0.00 32.75 5.03
34 37 0.250727 CCGCTCCAGGAAAACCTTCA 60.251 55.000 0.00 0.00 32.75 3.02
77 2267 0.958091 CTGGCAAAATCGTGGAACCA 59.042 50.000 0.00 0.00 0.00 3.67
108 2326 0.040425 ACACCGCTGTGAAAATTCGC 60.040 50.000 15.72 0.00 45.76 4.70
122 2340 6.583806 ACAGTAACGTTTTAGATTCTACACCG 59.416 38.462 5.91 0.00 0.00 4.94
125 2343 6.803320 CGGACAGTAACGTTTTAGATTCTACA 59.197 38.462 5.91 0.00 0.00 2.74
130 2349 4.624452 GCTCGGACAGTAACGTTTTAGATT 59.376 41.667 5.91 0.00 0.00 2.40
133 2352 3.311106 TGCTCGGACAGTAACGTTTTAG 58.689 45.455 5.91 0.00 0.00 1.85
134 2353 3.367992 TGCTCGGACAGTAACGTTTTA 57.632 42.857 5.91 0.00 0.00 1.52
179 2401 9.852481 CAGTAACGCGCTTTGTTTAAATATATA 57.148 29.630 5.73 0.00 0.00 0.86
180 2402 7.375017 GCAGTAACGCGCTTTGTTTAAATATAT 59.625 33.333 5.73 0.00 0.00 0.86
181 2403 6.683708 GCAGTAACGCGCTTTGTTTAAATATA 59.316 34.615 5.73 0.00 0.00 0.86
182 2404 5.510323 GCAGTAACGCGCTTTGTTTAAATAT 59.490 36.000 5.73 0.00 0.00 1.28
306 2913 5.068723 CGAAAAGACAGGAAGGGCTATAGTA 59.931 44.000 0.84 0.00 0.00 1.82
307 2914 4.141914 CGAAAAGACAGGAAGGGCTATAGT 60.142 45.833 0.84 0.00 0.00 2.12
308 2915 4.099573 TCGAAAAGACAGGAAGGGCTATAG 59.900 45.833 0.00 0.00 0.00 1.31
319 2926 5.986135 CCTAATGGAGTATCGAAAAGACAGG 59.014 44.000 0.00 0.00 34.37 4.00
438 3052 2.011453 CGGTGCGCATTAGGTTACC 58.989 57.895 15.91 6.32 0.00 2.85
502 3116 4.816385 TGCGGGAGATCATGTTTCTAATTC 59.184 41.667 0.00 0.00 0.00 2.17
505 3119 3.904800 TGCGGGAGATCATGTTTCTAA 57.095 42.857 0.00 0.00 0.00 2.10
506 3120 3.904800 TTGCGGGAGATCATGTTTCTA 57.095 42.857 0.00 0.00 0.00 2.10
507 3121 2.787473 TTGCGGGAGATCATGTTTCT 57.213 45.000 0.00 0.00 0.00 2.52
508 3122 3.848272 TTTTGCGGGAGATCATGTTTC 57.152 42.857 0.00 0.00 0.00 2.78
636 3279 3.328237 AAAATGAAAACGACGTCGCTT 57.672 38.095 35.92 28.02 44.43 4.68
651 3294 7.070571 TCCCTTTGCCACCCTTAATATAAAATG 59.929 37.037 0.00 0.00 0.00 2.32
652 3295 7.136203 TCCCTTTGCCACCCTTAATATAAAAT 58.864 34.615 0.00 0.00 0.00 1.82
653 3296 6.503944 TCCCTTTGCCACCCTTAATATAAAA 58.496 36.000 0.00 0.00 0.00 1.52
657 3302 4.832560 ATCCCTTTGCCACCCTTAATAT 57.167 40.909 0.00 0.00 0.00 1.28
665 3313 2.215942 ACTTGTATCCCTTTGCCACC 57.784 50.000 0.00 0.00 0.00 4.61
729 3385 7.537596 TCAATTGTCTTCTTCTCTTCTCTCT 57.462 36.000 5.13 0.00 0.00 3.10
730 3386 8.776376 ATTCAATTGTCTTCTTCTCTTCTCTC 57.224 34.615 5.13 0.00 0.00 3.20
736 3392 9.225436 GGACTTAATTCAATTGTCTTCTTCTCT 57.775 33.333 5.13 0.00 0.00 3.10
737 3393 9.003658 TGGACTTAATTCAATTGTCTTCTTCTC 57.996 33.333 5.13 0.00 0.00 2.87
863 3523 2.762745 GTAGTGTGAAAGAAAGGCGGA 58.237 47.619 0.00 0.00 0.00 5.54
864 3524 1.459592 CGTAGTGTGAAAGAAAGGCGG 59.540 52.381 0.00 0.00 0.00 6.13
865 3525 2.132762 ACGTAGTGTGAAAGAAAGGCG 58.867 47.619 0.00 0.00 42.51 5.52
918 3582 2.703007 CTCCAGCCTTTGTATAGGAGCT 59.297 50.000 0.00 0.00 37.50 4.09
1251 6457 2.967397 CCGTACTCCGACAGGCAA 59.033 61.111 0.00 0.00 39.56 4.52
1453 10828 2.228343 AGACACGCTAAGCTAAAGACGT 59.772 45.455 0.00 0.00 0.00 4.34
1540 10925 1.010419 CATTTCCAACTGCAAGCGCC 61.010 55.000 2.29 0.00 37.60 6.53
1551 10959 8.632906 AAATAATTTGCATTCACCATTTCCAA 57.367 26.923 0.00 0.00 0.00 3.53
1616 11112 5.689819 CGACAGAATTTTCTTGGTAACTGG 58.310 41.667 0.00 0.00 34.74 4.00
1675 11174 4.186926 CCTGTGTGTGAGATGGTATTCTG 58.813 47.826 0.00 0.00 0.00 3.02
1707 11209 5.488341 ACTCCGTATATTGTAATGGCATCC 58.512 41.667 0.00 0.00 0.00 3.51
1793 11300 3.243401 ACCCAAGAAAAACTCAATGTCGC 60.243 43.478 0.00 0.00 0.00 5.19
1800 11307 5.654650 TCTTTGCTTACCCAAGAAAAACTCA 59.345 36.000 0.00 0.00 38.56 3.41
1850 11358 6.999950 TGATAGCTGTGTTTTCTACCAGTTA 58.000 36.000 0.00 0.00 31.06 2.24
1851 11359 5.865085 TGATAGCTGTGTTTTCTACCAGTT 58.135 37.500 0.00 0.00 31.53 3.16
1852 11360 5.483685 TGATAGCTGTGTTTTCTACCAGT 57.516 39.130 0.00 0.00 31.53 4.00
1853 11361 6.108687 TGATGATAGCTGTGTTTTCTACCAG 58.891 40.000 0.00 0.00 0.00 4.00
1854 11362 6.048732 TGATGATAGCTGTGTTTTCTACCA 57.951 37.500 0.00 0.00 0.00 3.25
1855 11363 6.985188 TTGATGATAGCTGTGTTTTCTACC 57.015 37.500 0.00 0.00 0.00 3.18
1856 11364 8.201554 TGATTGATGATAGCTGTGTTTTCTAC 57.798 34.615 0.00 0.00 0.00 2.59
1857 11365 7.011763 GCTGATTGATGATAGCTGTGTTTTCTA 59.988 37.037 0.00 0.00 33.53 2.10
1895 11403 5.681337 TGCTGATTGATAACGTGTTCAAA 57.319 34.783 15.00 2.48 35.63 2.69
1896 11404 5.643348 AGATGCTGATTGATAACGTGTTCAA 59.357 36.000 13.80 13.80 36.38 2.69
1897 11405 5.178061 AGATGCTGATTGATAACGTGTTCA 58.822 37.500 0.00 0.00 0.00 3.18
1900 11408 5.235186 GCTTAGATGCTGATTGATAACGTGT 59.765 40.000 0.00 0.00 0.00 4.49
1969 11483 0.764890 AAGCTAGGAACACTGTGGCA 59.235 50.000 13.09 0.00 0.00 4.92
2050 11621 0.802494 GGCAACAGGTGTGAATACCG 59.198 55.000 0.00 0.00 45.56 4.02
2106 12070 6.882768 AATTCAGATCAAAGGGAGTACTCT 57.117 37.500 21.88 0.44 0.00 3.24
2159 12123 2.089581 CGCGGTTTCAGTACGACTTTAC 59.910 50.000 0.00 0.00 0.00 2.01
2166 12130 1.065358 ATTGACGCGGTTTCAGTACG 58.935 50.000 12.47 0.00 0.00 3.67
2167 12131 4.650545 TTAATTGACGCGGTTTCAGTAC 57.349 40.909 12.47 0.00 0.00 2.73
2186 12150 8.551682 AAAATGATGCCCTCCTATTCAAATTA 57.448 30.769 0.00 0.00 0.00 1.40
2192 12156 5.360714 TGTCAAAAATGATGCCCTCCTATTC 59.639 40.000 0.00 0.00 0.00 1.75
2196 12160 3.173953 TGTCAAAAATGATGCCCTCCT 57.826 42.857 0.00 0.00 0.00 3.69
2235 12201 4.227300 ACCATGCCCTAATAGAGACACAAA 59.773 41.667 0.00 0.00 0.00 2.83
2258 12224 0.331278 CCCTTGGGGCATACTGTTGA 59.669 55.000 0.00 0.00 35.35 3.18
2279 12245 2.028125 TAGCTGACATGCGGGGTAGC 62.028 60.000 0.00 0.00 38.13 3.58
2280 12246 0.032678 CTAGCTGACATGCGGGGTAG 59.967 60.000 0.00 0.00 38.13 3.18
2281 12247 1.399744 CCTAGCTGACATGCGGGGTA 61.400 60.000 0.00 0.00 38.13 3.69
2282 12248 2.735772 CCTAGCTGACATGCGGGGT 61.736 63.158 0.00 0.00 38.13 4.95
2283 12249 2.109799 CCTAGCTGACATGCGGGG 59.890 66.667 0.00 0.00 38.13 5.73
2284 12250 2.590007 GCCTAGCTGACATGCGGG 60.590 66.667 0.00 0.00 38.13 6.13
2285 12251 1.593750 GAGCCTAGCTGACATGCGG 60.594 63.158 0.00 0.00 39.88 5.69
2286 12252 1.948138 CGAGCCTAGCTGACATGCG 60.948 63.158 0.00 0.00 39.88 4.73
2287 12253 1.593750 CCGAGCCTAGCTGACATGC 60.594 63.158 0.00 0.00 39.88 4.06
2288 12254 0.678395 ATCCGAGCCTAGCTGACATG 59.322 55.000 0.00 0.00 39.88 3.21
2289 12255 0.678395 CATCCGAGCCTAGCTGACAT 59.322 55.000 0.00 0.00 39.88 3.06
2290 12256 2.021068 GCATCCGAGCCTAGCTGACA 62.021 60.000 0.00 0.00 39.88 3.58
2291 12257 1.300542 GCATCCGAGCCTAGCTGAC 60.301 63.158 0.00 0.00 39.88 3.51
2292 12258 3.133014 GCATCCGAGCCTAGCTGA 58.867 61.111 0.00 0.00 39.88 4.26
2301 12267 1.298157 TTTCACGCTTGGCATCCGAG 61.298 55.000 13.16 6.39 38.05 4.63
2302 12268 1.302112 TTTCACGCTTGGCATCCGA 60.302 52.632 13.16 0.00 0.00 4.55
2303 12269 1.154225 GTTTCACGCTTGGCATCCG 60.154 57.895 5.86 5.86 0.00 4.18
2304 12270 0.313672 TTGTTTCACGCTTGGCATCC 59.686 50.000 0.00 0.00 0.00 3.51
2305 12271 2.132740 TTTGTTTCACGCTTGGCATC 57.867 45.000 0.00 0.00 0.00 3.91
2306 12272 2.159114 ACTTTTGTTTCACGCTTGGCAT 60.159 40.909 0.00 0.00 0.00 4.40
2307 12273 1.203523 ACTTTTGTTTCACGCTTGGCA 59.796 42.857 0.00 0.00 0.00 4.92
2308 12274 1.587946 CACTTTTGTTTCACGCTTGGC 59.412 47.619 0.00 0.00 0.00 4.52
2309 12275 2.192624 CCACTTTTGTTTCACGCTTGG 58.807 47.619 0.00 0.00 0.00 3.61
2310 12276 2.874849 ACCACTTTTGTTTCACGCTTG 58.125 42.857 0.00 0.00 0.00 4.01
2311 12277 3.249917 CAACCACTTTTGTTTCACGCTT 58.750 40.909 0.00 0.00 0.00 4.68
2312 12278 2.874849 CAACCACTTTTGTTTCACGCT 58.125 42.857 0.00 0.00 0.00 5.07
2313 12279 1.323235 GCAACCACTTTTGTTTCACGC 59.677 47.619 0.00 0.00 0.00 5.34
2314 12280 1.923864 GGCAACCACTTTTGTTTCACG 59.076 47.619 0.00 0.00 0.00 4.35
2315 12281 3.186909 GAGGCAACCACTTTTGTTTCAC 58.813 45.455 0.00 0.00 37.17 3.18
2316 12282 2.828520 TGAGGCAACCACTTTTGTTTCA 59.171 40.909 0.00 0.00 37.17 2.69
2317 12283 3.186909 GTGAGGCAACCACTTTTGTTTC 58.813 45.455 0.00 0.00 35.61 2.78
2318 12284 2.564947 TGTGAGGCAACCACTTTTGTTT 59.435 40.909 0.00 0.00 38.23 2.83
2319 12285 2.175202 TGTGAGGCAACCACTTTTGTT 58.825 42.857 0.00 0.00 38.23 2.83
2320 12286 1.846007 TGTGAGGCAACCACTTTTGT 58.154 45.000 0.00 0.00 38.23 2.83
2321 12287 2.957491 TTGTGAGGCAACCACTTTTG 57.043 45.000 0.00 0.00 38.23 2.44
2322 12288 3.096092 TCTTTGTGAGGCAACCACTTTT 58.904 40.909 0.00 0.00 38.23 2.27
2323 12289 2.427095 GTCTTTGTGAGGCAACCACTTT 59.573 45.455 0.00 0.00 38.23 2.66
2324 12290 2.024414 GTCTTTGTGAGGCAACCACTT 58.976 47.619 0.00 0.00 38.23 3.16
2325 12291 1.064758 TGTCTTTGTGAGGCAACCACT 60.065 47.619 0.00 0.00 36.96 4.00
2326 12292 1.334869 CTGTCTTTGTGAGGCAACCAC 59.665 52.381 0.00 0.00 40.04 4.16
2327 12293 1.211703 TCTGTCTTTGTGAGGCAACCA 59.788 47.619 0.00 0.00 40.04 3.67
2328 12294 1.967319 TCTGTCTTTGTGAGGCAACC 58.033 50.000 0.00 0.00 40.04 3.77
2329 12295 3.141398 TCATCTGTCTTTGTGAGGCAAC 58.859 45.455 0.00 0.00 40.04 4.17
2330 12296 3.490439 TCATCTGTCTTTGTGAGGCAA 57.510 42.857 0.00 0.00 40.04 4.52
2331 12297 3.708403 ATCATCTGTCTTTGTGAGGCA 57.292 42.857 0.00 0.00 37.74 4.75
2332 12298 4.260170 AGAATCATCTGTCTTTGTGAGGC 58.740 43.478 0.00 0.00 33.59 4.70
2333 12299 6.092396 CAGAAGAATCATCTGTCTTTGTGAGG 59.908 42.308 7.28 0.00 39.54 3.86
2334 12300 6.402334 GCAGAAGAATCATCTGTCTTTGTGAG 60.402 42.308 15.63 0.00 44.88 3.51
2335 12301 5.410746 GCAGAAGAATCATCTGTCTTTGTGA 59.589 40.000 15.63 0.00 44.88 3.58
2336 12302 5.180680 TGCAGAAGAATCATCTGTCTTTGTG 59.819 40.000 15.63 0.00 44.88 3.33
2337 12303 5.311265 TGCAGAAGAATCATCTGTCTTTGT 58.689 37.500 15.63 0.00 44.88 2.83
2338 12304 5.874895 TGCAGAAGAATCATCTGTCTTTG 57.125 39.130 15.63 0.00 44.88 2.77
2339 12305 6.236409 TCTTGCAGAAGAATCATCTGTCTTT 58.764 36.000 15.63 0.00 44.88 2.52
2340 12306 5.802465 TCTTGCAGAAGAATCATCTGTCTT 58.198 37.500 15.63 0.00 44.88 3.01
2341 12307 5.417754 TCTTGCAGAAGAATCATCTGTCT 57.582 39.130 15.63 0.45 44.88 3.41
2342 12308 4.571580 CCTCTTGCAGAAGAATCATCTGTC 59.428 45.833 15.63 9.35 44.88 3.51
2343 12309 4.019501 ACCTCTTGCAGAAGAATCATCTGT 60.020 41.667 15.63 0.00 44.88 3.41
2344 12310 4.333095 CACCTCTTGCAGAAGAATCATCTG 59.667 45.833 10.79 10.79 45.65 2.90
2345 12311 4.515361 CACCTCTTGCAGAAGAATCATCT 58.485 43.478 0.00 0.00 37.77 2.90
2346 12312 3.626670 CCACCTCTTGCAGAAGAATCATC 59.373 47.826 0.00 0.00 37.77 2.92
2347 12313 3.618351 CCACCTCTTGCAGAAGAATCAT 58.382 45.455 0.00 0.00 37.77 2.45
2348 12314 2.290514 CCCACCTCTTGCAGAAGAATCA 60.291 50.000 0.00 0.00 37.77 2.57
2349 12315 2.290577 ACCCACCTCTTGCAGAAGAATC 60.291 50.000 0.00 0.00 37.77 2.52
2350 12316 1.707427 ACCCACCTCTTGCAGAAGAAT 59.293 47.619 0.00 0.00 37.77 2.40
2351 12317 1.140312 ACCCACCTCTTGCAGAAGAA 58.860 50.000 0.00 0.00 37.77 2.52
2352 12318 2.024176 TACCCACCTCTTGCAGAAGA 57.976 50.000 0.00 0.00 36.72 2.87
2353 12319 3.356529 AATACCCACCTCTTGCAGAAG 57.643 47.619 0.00 0.00 0.00 2.85
2354 12320 3.420893 CAAATACCCACCTCTTGCAGAA 58.579 45.455 0.00 0.00 0.00 3.02
2355 12321 2.290896 CCAAATACCCACCTCTTGCAGA 60.291 50.000 0.00 0.00 0.00 4.26
2356 12322 2.094675 CCAAATACCCACCTCTTGCAG 58.905 52.381 0.00 0.00 0.00 4.41
2357 12323 1.272425 CCCAAATACCCACCTCTTGCA 60.272 52.381 0.00 0.00 0.00 4.08
2358 12324 1.474330 CCCAAATACCCACCTCTTGC 58.526 55.000 0.00 0.00 0.00 4.01
2359 12325 1.638589 TCCCCAAATACCCACCTCTTG 59.361 52.381 0.00 0.00 0.00 3.02
2360 12326 1.923148 CTCCCCAAATACCCACCTCTT 59.077 52.381 0.00 0.00 0.00 2.85
2361 12327 1.082194 TCTCCCCAAATACCCACCTCT 59.918 52.381 0.00 0.00 0.00 3.69
2362 12328 1.490910 CTCTCCCCAAATACCCACCTC 59.509 57.143 0.00 0.00 0.00 3.85
2363 12329 1.082194 TCTCTCCCCAAATACCCACCT 59.918 52.381 0.00 0.00 0.00 4.00
2364 12330 1.490910 CTCTCTCCCCAAATACCCACC 59.509 57.143 0.00 0.00 0.00 4.61
2365 12331 1.490910 CCTCTCTCCCCAAATACCCAC 59.509 57.143 0.00 0.00 0.00 4.61
2366 12332 1.082194 ACCTCTCTCCCCAAATACCCA 59.918 52.381 0.00 0.00 0.00 4.51
2367 12333 1.894699 ACCTCTCTCCCCAAATACCC 58.105 55.000 0.00 0.00 0.00 3.69
2368 12334 2.576648 ACAACCTCTCTCCCCAAATACC 59.423 50.000 0.00 0.00 0.00 2.73
2369 12335 3.610911 CACAACCTCTCTCCCCAAATAC 58.389 50.000 0.00 0.00 0.00 1.89
2370 12336 2.576191 CCACAACCTCTCTCCCCAAATA 59.424 50.000 0.00 0.00 0.00 1.40
2371 12337 1.355720 CCACAACCTCTCTCCCCAAAT 59.644 52.381 0.00 0.00 0.00 2.32
2372 12338 0.771127 CCACAACCTCTCTCCCCAAA 59.229 55.000 0.00 0.00 0.00 3.28
2373 12339 0.401395 ACCACAACCTCTCTCCCCAA 60.401 55.000 0.00 0.00 0.00 4.12
2374 12340 0.836400 GACCACAACCTCTCTCCCCA 60.836 60.000 0.00 0.00 0.00 4.96
2375 12341 1.554583 GGACCACAACCTCTCTCCCC 61.555 65.000 0.00 0.00 0.00 4.81
2376 12342 0.836400 TGGACCACAACCTCTCTCCC 60.836 60.000 0.00 0.00 0.00 4.30
2377 12343 1.056660 TTGGACCACAACCTCTCTCC 58.943 55.000 0.00 0.00 33.18 3.71
2391 12357 2.875933 TCATCACTTTTGGTCGTTGGAC 59.124 45.455 0.00 0.00 42.66 4.02
2392 12358 3.138304 CTCATCACTTTTGGTCGTTGGA 58.862 45.455 0.00 0.00 0.00 3.53
2393 12359 3.138304 TCTCATCACTTTTGGTCGTTGG 58.862 45.455 0.00 0.00 0.00 3.77
2394 12360 4.058124 TCTCTCATCACTTTTGGTCGTTG 58.942 43.478 0.00 0.00 0.00 4.10
2395 12361 4.336889 TCTCTCATCACTTTTGGTCGTT 57.663 40.909 0.00 0.00 0.00 3.85
2396 12362 4.336889 TTCTCTCATCACTTTTGGTCGT 57.663 40.909 0.00 0.00 0.00 4.34
2397 12363 4.991056 TCTTTCTCTCATCACTTTTGGTCG 59.009 41.667 0.00 0.00 0.00 4.79
2398 12364 5.411053 CCTCTTTCTCTCATCACTTTTGGTC 59.589 44.000 0.00 0.00 0.00 4.02
2399 12365 5.312079 CCTCTTTCTCTCATCACTTTTGGT 58.688 41.667 0.00 0.00 0.00 3.67
2400 12366 4.699257 CCCTCTTTCTCTCATCACTTTTGG 59.301 45.833 0.00 0.00 0.00 3.28
2401 12367 4.699257 CCCCTCTTTCTCTCATCACTTTTG 59.301 45.833 0.00 0.00 0.00 2.44
2402 12368 4.809007 GCCCCTCTTTCTCTCATCACTTTT 60.809 45.833 0.00 0.00 0.00 2.27
2403 12369 3.308046 GCCCCTCTTTCTCTCATCACTTT 60.308 47.826 0.00 0.00 0.00 2.66
2404 12370 2.238395 GCCCCTCTTTCTCTCATCACTT 59.762 50.000 0.00 0.00 0.00 3.16
2405 12371 1.836802 GCCCCTCTTTCTCTCATCACT 59.163 52.381 0.00 0.00 0.00 3.41
2406 12372 1.556911 TGCCCCTCTTTCTCTCATCAC 59.443 52.381 0.00 0.00 0.00 3.06
2407 12373 1.956869 TGCCCCTCTTTCTCTCATCA 58.043 50.000 0.00 0.00 0.00 3.07
2408 12374 2.848691 CATGCCCCTCTTTCTCTCATC 58.151 52.381 0.00 0.00 0.00 2.92
2409 12375 1.133853 GCATGCCCCTCTTTCTCTCAT 60.134 52.381 6.36 0.00 0.00 2.90
2410 12376 0.254178 GCATGCCCCTCTTTCTCTCA 59.746 55.000 6.36 0.00 0.00 3.27
2411 12377 0.545646 AGCATGCCCCTCTTTCTCTC 59.454 55.000 15.66 0.00 0.00 3.20
2412 12378 0.255318 CAGCATGCCCCTCTTTCTCT 59.745 55.000 15.66 0.00 0.00 3.10
2413 12379 0.750911 CCAGCATGCCCCTCTTTCTC 60.751 60.000 15.66 0.00 31.97 2.87
2414 12380 1.305623 CCAGCATGCCCCTCTTTCT 59.694 57.895 15.66 0.00 31.97 2.52
2415 12381 2.421399 GCCAGCATGCCCCTCTTTC 61.421 63.158 15.66 0.00 31.97 2.62
2416 12382 2.363406 GCCAGCATGCCCCTCTTT 60.363 61.111 15.66 0.00 31.97 2.52
2417 12383 4.809496 CGCCAGCATGCCCCTCTT 62.809 66.667 15.66 0.00 31.97 2.85
2425 12391 3.190849 CTCACCGTCGCCAGCATG 61.191 66.667 0.00 0.00 0.00 4.06
2434 12400 4.210304 GAATGCGCGCTCACCGTC 62.210 66.667 33.29 15.46 39.71 4.79
2437 12403 1.595382 ATAGGAATGCGCGCTCACC 60.595 57.895 33.29 28.17 0.00 4.02
2438 12404 1.566563 CATAGGAATGCGCGCTCAC 59.433 57.895 33.29 21.15 0.00 3.51
2439 12405 4.032356 CATAGGAATGCGCGCTCA 57.968 55.556 33.29 14.09 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.