Multiple sequence alignment - TraesCS5B01G374100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G374100 chr5B 100.000 3506 0 0 1 3506 551507910 551511415 0.000000e+00 6475.0
1 TraesCS5B01G374100 chr5D 93.979 2541 112 21 399 2912 451683517 451686043 0.000000e+00 3807.0
2 TraesCS5B01G374100 chr5D 90.234 256 22 3 2944 3198 451686045 451686298 7.250000e-87 331.0
3 TraesCS5B01G374100 chr5D 86.321 212 12 8 66 266 451683270 451683475 7.620000e-52 215.0
4 TraesCS5B01G374100 chr5A 90.798 2608 151 34 362 2934 570507896 570510449 0.000000e+00 3404.0
5 TraesCS5B01G374100 chr5A 93.548 279 17 1 2944 3222 570510595 570510872 7.000000e-112 414.0
6 TraesCS5B01G374100 chr5A 85.714 189 16 6 82 266 570507700 570507881 4.620000e-44 189.0
7 TraesCS5B01G374100 chr5A 91.429 105 7 2 3217 3321 227472581 227472479 3.650000e-30 143.0
8 TraesCS5B01G374100 chr5A 97.143 35 1 0 2906 2940 570510487 570510453 3.780000e-05 60.2
9 TraesCS5B01G374100 chr7A 88.153 574 50 7 2132 2697 635690017 635690580 0.000000e+00 667.0
10 TraesCS5B01G374100 chr7B 87.845 543 45 11 2162 2697 594961169 594961697 4.970000e-173 617.0
11 TraesCS5B01G374100 chr2D 90.036 281 26 2 1228 1507 617891114 617891393 2.570000e-96 363.0
12 TraesCS5B01G374100 chr2D 87.742 155 19 0 2367 2521 617894338 617894492 7.730000e-42 182.0
13 TraesCS5B01G374100 chr2A 90.036 281 26 2 1228 1507 748441351 748441630 2.570000e-96 363.0
14 TraesCS5B01G374100 chr2B 90.299 268 24 2 1241 1507 753804876 753804610 2.000000e-92 350.0
15 TraesCS5B01G374100 chr3B 88.387 155 18 0 2367 2521 165911194 165911040 1.660000e-43 187.0
16 TraesCS5B01G374100 chr3B 96.774 93 3 0 3214 3306 460106388 460106296 4.690000e-34 156.0
17 TraesCS5B01G374100 chr3B 92.453 106 6 2 3206 3309 175772568 175772673 2.180000e-32 150.0
18 TraesCS5B01G374100 chr3B 92.453 106 6 2 3206 3309 175773883 175773988 2.180000e-32 150.0
19 TraesCS5B01G374100 chr3B 93.137 102 6 1 3215 3316 20433730 20433630 7.840000e-32 148.0
20 TraesCS5B01G374100 chr3B 95.000 40 2 0 2908 2947 18776204 18776165 2.920000e-06 63.9
21 TraesCS5B01G374100 chr1B 88.387 155 18 0 2367 2521 82987653 82987807 1.660000e-43 187.0
22 TraesCS5B01G374100 chr6A 87.742 155 19 0 2367 2521 239256528 239256374 7.730000e-42 182.0
23 TraesCS5B01G374100 chr6A 87.742 155 19 0 2367 2521 477475638 477475792 7.730000e-42 182.0
24 TraesCS5B01G374100 chr4B 96.809 94 2 1 3214 3306 600373585 600373492 4.690000e-34 156.0
25 TraesCS5B01G374100 chr6B 96.739 92 2 1 3215 3306 244560610 244560520 6.060000e-33 152.0
26 TraesCS5B01G374100 chr4A 95.699 93 4 0 3214 3306 681667326 681667418 2.180000e-32 150.0
27 TraesCS5B01G374100 chr1D 94.737 95 5 0 3214 3308 12153549 12153643 7.840000e-32 148.0
28 TraesCS5B01G374100 chr1A 90.769 65 6 0 1 65 394589770 394589834 1.730000e-13 87.9
29 TraesCS5B01G374100 chr7D 88.889 63 7 0 1 63 446367570 446367632 1.040000e-10 78.7
30 TraesCS5B01G374100 chr3D 91.071 56 5 0 1 56 395518400 395518345 3.750000e-10 76.8
31 TraesCS5B01G374100 chr4D 88.333 60 6 1 1 59 428719684 428719625 1.750000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G374100 chr5B 551507910 551511415 3505 False 6475.000000 6475 100.000 1 3506 1 chr5B.!!$F1 3505
1 TraesCS5B01G374100 chr5D 451683270 451686298 3028 False 1451.000000 3807 90.178 66 3198 3 chr5D.!!$F1 3132
2 TraesCS5B01G374100 chr5A 570507700 570510872 3172 False 1335.666667 3404 90.020 82 3222 3 chr5A.!!$F1 3140
3 TraesCS5B01G374100 chr7A 635690017 635690580 563 False 667.000000 667 88.153 2132 2697 1 chr7A.!!$F1 565
4 TraesCS5B01G374100 chr7B 594961169 594961697 528 False 617.000000 617 87.845 2162 2697 1 chr7B.!!$F1 535
5 TraesCS5B01G374100 chr2D 617891114 617894492 3378 False 272.500000 363 88.889 1228 2521 2 chr2D.!!$F1 1293

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
350 362 0.035152 ATCCGACCAGCATTGCAAGA 60.035 50.0 11.91 0.00 0.0 3.02 F
352 364 0.169672 CCGACCAGCATTGCAAGAAG 59.830 55.0 11.91 0.00 0.0 2.85 F
353 365 0.169672 CGACCAGCATTGCAAGAAGG 59.830 55.0 11.91 6.86 0.0 3.46 F
435 447 0.255318 CCATGAGCTTGGCCTTCTCT 59.745 55.0 3.32 0.00 0.0 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1844 3029 0.179018 CCCGGTGGAGATCAATTCCC 60.179 60.000 0.00 0.00 33.62 3.97 R
2292 4357 0.254178 AGGATGTGACACAGGATGCC 59.746 55.000 14.66 9.67 42.53 4.40 R
2305 4370 1.561643 TTCTTCCGCAGAGAGGATGT 58.438 50.000 0.00 0.00 37.65 3.06 R
2546 4686 8.560374 AGGAGACAATAAAAACGAAGAAAAGAG 58.440 33.333 0.00 0.00 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.878667 TGTCTACATACATCCGATTTAGAAAAA 57.121 29.630 0.00 0.00 0.00 1.94
60 61 9.327731 ACATCTTATAATAGTAAAGGGAGGGAG 57.672 37.037 0.00 0.00 0.00 4.30
61 62 9.327731 CATCTTATAATAGTAAAGGGAGGGAGT 57.672 37.037 0.00 0.00 0.00 3.85
70 71 0.644937 AGGGAGGGAGTAAGAGGCAT 59.355 55.000 0.00 0.00 0.00 4.40
109 117 3.976169 TGCAACACTGATACAAAAAGCC 58.024 40.909 0.00 0.00 0.00 4.35
159 167 9.439537 GTCACAAGAAAACTAGCTTTAAAGAAG 57.560 33.333 19.48 16.00 0.00 2.85
179 187 2.041620 AGGACCAATGTACAAGCACCAT 59.958 45.455 0.00 0.00 0.00 3.55
187 195 5.981088 ATGTACAAGCACCATCATTTGAA 57.019 34.783 0.00 0.00 0.00 2.69
189 197 6.154203 TGTACAAGCACCATCATTTGAAAA 57.846 33.333 0.00 0.00 0.00 2.29
190 198 5.982516 TGTACAAGCACCATCATTTGAAAAC 59.017 36.000 0.00 0.00 0.00 2.43
191 199 4.050553 ACAAGCACCATCATTTGAAAACG 58.949 39.130 0.00 0.00 0.00 3.60
192 200 4.050553 CAAGCACCATCATTTGAAAACGT 58.949 39.130 0.00 0.00 0.00 3.99
196 204 6.454795 AGCACCATCATTTGAAAACGTAAAT 58.545 32.000 0.00 0.00 0.00 1.40
210 218 9.970395 TGAAAACGTAAATAGACTTCAGAACTA 57.030 29.630 0.00 0.00 0.00 2.24
252 264 2.191128 ATGGACAAGCAGAACAGACC 57.809 50.000 0.00 0.00 0.00 3.85
253 265 0.836606 TGGACAAGCAGAACAGACCA 59.163 50.000 0.00 0.00 0.00 4.02
255 267 2.637382 TGGACAAGCAGAACAGACCATA 59.363 45.455 0.00 0.00 0.00 2.74
266 278 5.579904 CAGAACAGACCATATCAGTGTTCAG 59.420 44.000 14.13 4.38 46.18 3.02
267 279 5.481824 AGAACAGACCATATCAGTGTTCAGA 59.518 40.000 14.13 0.00 46.18 3.27
271 283 8.027524 ACAGACCATATCAGTGTTCAGATTAT 57.972 34.615 0.00 0.00 0.00 1.28
275 287 9.935241 GACCATATCAGTGTTCAGATTATATGT 57.065 33.333 0.00 0.00 0.00 2.29
276 288 9.935241 ACCATATCAGTGTTCAGATTATATGTC 57.065 33.333 0.00 0.00 0.00 3.06
277 289 9.933723 CCATATCAGTGTTCAGATTATATGTCA 57.066 33.333 0.00 0.00 0.00 3.58
281 293 8.492673 TCAGTGTTCAGATTATATGTCAAACC 57.507 34.615 0.00 0.00 0.00 3.27
282 294 7.552687 TCAGTGTTCAGATTATATGTCAAACCC 59.447 37.037 0.00 0.00 0.00 4.11
283 295 7.336679 CAGTGTTCAGATTATATGTCAAACCCA 59.663 37.037 0.00 0.00 0.00 4.51
284 296 7.888021 AGTGTTCAGATTATATGTCAAACCCAA 59.112 33.333 0.00 0.00 0.00 4.12
285 297 8.184192 GTGTTCAGATTATATGTCAAACCCAAG 58.816 37.037 0.00 0.00 0.00 3.61
286 298 8.106462 TGTTCAGATTATATGTCAAACCCAAGA 58.894 33.333 0.00 0.00 0.00 3.02
287 299 8.956426 GTTCAGATTATATGTCAAACCCAAGAA 58.044 33.333 0.00 0.00 0.00 2.52
288 300 8.737168 TCAGATTATATGTCAAACCCAAGAAG 57.263 34.615 0.00 0.00 0.00 2.85
289 301 7.775093 TCAGATTATATGTCAAACCCAAGAAGG 59.225 37.037 0.00 0.00 37.03 3.46
290 302 7.557719 CAGATTATATGTCAAACCCAAGAAGGT 59.442 37.037 0.00 0.00 44.00 3.50
291 303 7.557719 AGATTATATGTCAAACCCAAGAAGGTG 59.442 37.037 0.00 0.00 40.05 4.00
292 304 2.065899 TGTCAAACCCAAGAAGGTGG 57.934 50.000 0.00 0.00 40.05 4.61
293 305 1.286553 TGTCAAACCCAAGAAGGTGGT 59.713 47.619 0.00 0.00 40.05 4.16
294 306 2.510382 TGTCAAACCCAAGAAGGTGGTA 59.490 45.455 0.00 0.00 40.05 3.25
295 307 3.139397 TGTCAAACCCAAGAAGGTGGTAT 59.861 43.478 0.00 0.00 40.05 2.73
296 308 4.351407 TGTCAAACCCAAGAAGGTGGTATA 59.649 41.667 0.00 0.00 40.05 1.47
297 309 5.014755 TGTCAAACCCAAGAAGGTGGTATAT 59.985 40.000 0.00 0.00 40.05 0.86
298 310 5.949952 GTCAAACCCAAGAAGGTGGTATATT 59.050 40.000 0.00 0.00 40.05 1.28
299 311 6.095021 GTCAAACCCAAGAAGGTGGTATATTC 59.905 42.308 0.00 0.00 40.05 1.75
300 312 5.789574 AACCCAAGAAGGTGGTATATTCA 57.210 39.130 0.00 0.00 40.05 2.57
301 313 5.112129 ACCCAAGAAGGTGGTATATTCAC 57.888 43.478 1.84 1.84 39.24 3.18
302 314 4.788617 ACCCAAGAAGGTGGTATATTCACT 59.211 41.667 8.44 0.00 39.24 3.41
303 315 5.253096 ACCCAAGAAGGTGGTATATTCACTT 59.747 40.000 8.44 0.00 39.24 3.16
304 316 5.823045 CCCAAGAAGGTGGTATATTCACTTC 59.177 44.000 8.44 0.00 36.90 3.01
305 317 6.414732 CCAAGAAGGTGGTATATTCACTTCA 58.585 40.000 0.00 0.00 35.61 3.02
306 318 6.316390 CCAAGAAGGTGGTATATTCACTTCAC 59.684 42.308 0.00 0.00 35.61 3.18
307 319 5.990668 AGAAGGTGGTATATTCACTTCACC 58.009 41.667 0.00 0.00 43.41 4.02
310 322 5.099042 GGTGGTATATTCACTTCACCTGT 57.901 43.478 0.00 0.00 40.84 4.00
311 323 5.497474 GGTGGTATATTCACTTCACCTGTT 58.503 41.667 0.00 0.00 40.84 3.16
312 324 5.585047 GGTGGTATATTCACTTCACCTGTTC 59.415 44.000 0.00 0.00 40.84 3.18
313 325 6.170506 GTGGTATATTCACTTCACCTGTTCA 58.829 40.000 0.00 0.00 32.78 3.18
314 326 6.092259 GTGGTATATTCACTTCACCTGTTCAC 59.908 42.308 0.00 0.00 32.78 3.18
315 327 5.585047 GGTATATTCACTTCACCTGTTCACC 59.415 44.000 0.00 0.00 0.00 4.02
316 328 1.948104 TTCACTTCACCTGTTCACCG 58.052 50.000 0.00 0.00 0.00 4.94
317 329 0.828022 TCACTTCACCTGTTCACCGT 59.172 50.000 0.00 0.00 0.00 4.83
318 330 2.033372 TCACTTCACCTGTTCACCGTA 58.967 47.619 0.00 0.00 0.00 4.02
319 331 2.431419 TCACTTCACCTGTTCACCGTAA 59.569 45.455 0.00 0.00 0.00 3.18
320 332 2.542595 CACTTCACCTGTTCACCGTAAC 59.457 50.000 0.00 0.00 0.00 2.50
321 333 2.168936 ACTTCACCTGTTCACCGTAACA 59.831 45.455 0.00 0.00 37.75 2.41
345 357 1.813513 GGGATATCCGACCAGCATTG 58.186 55.000 15.69 0.00 36.71 2.82
346 358 1.160137 GGATATCCGACCAGCATTGC 58.840 55.000 5.86 0.00 0.00 3.56
347 359 1.543208 GGATATCCGACCAGCATTGCA 60.543 52.381 11.91 0.00 0.00 4.08
348 360 2.221169 GATATCCGACCAGCATTGCAA 58.779 47.619 11.91 0.00 0.00 4.08
349 361 1.667236 TATCCGACCAGCATTGCAAG 58.333 50.000 11.91 3.87 0.00 4.01
350 362 0.035152 ATCCGACCAGCATTGCAAGA 60.035 50.000 11.91 0.00 0.00 3.02
351 363 0.250684 TCCGACCAGCATTGCAAGAA 60.251 50.000 11.91 0.00 0.00 2.52
352 364 0.169672 CCGACCAGCATTGCAAGAAG 59.830 55.000 11.91 0.00 0.00 2.85
353 365 0.169672 CGACCAGCATTGCAAGAAGG 59.830 55.000 11.91 6.86 0.00 3.46
354 366 1.538047 GACCAGCATTGCAAGAAGGA 58.462 50.000 11.91 0.00 0.00 3.36
355 367 1.200948 GACCAGCATTGCAAGAAGGAC 59.799 52.381 11.91 1.25 0.00 3.85
356 368 0.529378 CCAGCATTGCAAGAAGGACC 59.471 55.000 11.91 0.00 0.00 4.46
357 369 1.250328 CAGCATTGCAAGAAGGACCA 58.750 50.000 11.91 0.00 0.00 4.02
358 370 1.201647 CAGCATTGCAAGAAGGACCAG 59.798 52.381 11.91 0.00 0.00 4.00
359 371 1.074405 AGCATTGCAAGAAGGACCAGA 59.926 47.619 11.91 0.00 0.00 3.86
360 372 1.200948 GCATTGCAAGAAGGACCAGAC 59.799 52.381 4.94 0.00 0.00 3.51
394 406 5.585820 GGAAGACTTCCTAGTTCCTACTG 57.414 47.826 24.55 0.00 46.57 2.74
395 407 4.142116 GGAAGACTTCCTAGTTCCTACTGC 60.142 50.000 24.55 0.00 46.57 4.40
396 408 3.367321 AGACTTCCTAGTTCCTACTGCC 58.633 50.000 0.00 0.00 35.78 4.85
397 409 2.099427 GACTTCCTAGTTCCTACTGCCG 59.901 54.545 0.00 0.00 35.78 5.69
435 447 0.255318 CCATGAGCTTGGCCTTCTCT 59.745 55.000 3.32 0.00 0.00 3.10
436 448 1.380524 CATGAGCTTGGCCTTCTCTG 58.619 55.000 3.32 4.79 0.00 3.35
468 480 1.399744 CGGGGTTGATCTCGATGGGA 61.400 60.000 0.00 0.00 0.00 4.37
566 580 3.006003 ACGACCACACATACACACACATA 59.994 43.478 0.00 0.00 0.00 2.29
605 627 2.567615 GTCCTAAGCTCCCAAGTCTGAA 59.432 50.000 0.00 0.00 0.00 3.02
625 649 4.529769 TGAAGAGAAATCAGCAGAAGAGGA 59.470 41.667 0.00 0.00 0.00 3.71
720 744 4.470304 ACCAATGGAAGACCCTAGTTAGAC 59.530 45.833 6.16 0.00 35.38 2.59
789 813 0.460284 GCGAACCTGCAGCTTAGCTA 60.460 55.000 16.79 0.00 36.40 3.32
873 897 2.603776 GGGTCCCGACACTGGAGT 60.604 66.667 0.00 0.00 30.98 3.85
1080 1125 3.089788 ACGAACCCCTGTTTGTGTC 57.910 52.632 0.00 0.00 45.43 3.67
1193 1244 2.652113 CCTCCTCCTCCCCTCCCTT 61.652 68.421 0.00 0.00 0.00 3.95
1344 1395 2.501610 GAGGTGTCCCGGCTGATC 59.498 66.667 0.00 0.00 35.12 2.92
1417 1468 4.924187 AGGCCGGGGAGGAGATCG 62.924 72.222 2.18 0.00 45.00 3.69
1674 2041 2.225467 GAGCTTATCCAGGCCATTGTC 58.775 52.381 5.01 0.00 0.00 3.18
1762 2276 2.046892 AGGTGGTGCTCGACATGC 60.047 61.111 3.34 0.00 0.00 4.06
1844 3029 2.682352 TGAGCAGAGACGAGATTGAGAG 59.318 50.000 0.00 0.00 0.00 3.20
1860 3045 2.774234 TGAGAGGGAATTGATCTCCACC 59.226 50.000 2.22 0.00 38.97 4.61
1914 3099 3.320626 TGATGTGCTTTCTCTGAAGTCG 58.679 45.455 0.00 0.00 0.00 4.18
1998 3381 1.807573 CTTCTCCTTCGCCGAGCAC 60.808 63.158 0.00 0.00 0.00 4.40
2094 3563 2.728007 GAGGCTTTTGATAGGCAAGGT 58.272 47.619 0.00 0.00 42.74 3.50
2100 3569 2.698855 TTGATAGGCAAGGTGAGCTC 57.301 50.000 6.82 6.82 31.55 4.09
2276 4341 1.745087 CATTGTCTTCCCGTTGGATGG 59.255 52.381 0.00 0.00 41.40 3.51
2292 4357 1.903877 ATGGTGAGCTTCAGGGACCG 61.904 60.000 0.00 0.00 0.00 4.79
2305 4370 2.662596 GACCGGCATCCTGTGTCA 59.337 61.111 0.00 0.00 30.99 3.58
2546 4686 3.444792 TTTACTTCCAAACCTAGCCCC 57.555 47.619 0.00 0.00 0.00 5.80
2563 4703 4.466827 AGCCCCTCTTTTCTTCGTTTTTA 58.533 39.130 0.00 0.00 0.00 1.52
2570 4710 7.803659 CCCTCTTTTCTTCGTTTTTATTGTCTC 59.196 37.037 0.00 0.00 0.00 3.36
2581 4721 6.577427 CGTTTTTATTGTCTCCTGTTGTTAGC 59.423 38.462 0.00 0.00 0.00 3.09
2599 4739 0.037046 GCCCTCCCTTTGCAACATTG 60.037 55.000 0.00 0.00 0.00 2.82
2609 4749 4.362279 CTTTGCAACATTGTAAGCTGTGT 58.638 39.130 0.00 0.00 34.36 3.72
2610 4750 3.352554 TGCAACATTGTAAGCTGTGTG 57.647 42.857 13.27 0.00 0.00 3.82
2611 4751 2.053627 GCAACATTGTAAGCTGTGTGC 58.946 47.619 6.84 0.00 43.29 4.57
2612 4752 2.664916 CAACATTGTAAGCTGTGTGCC 58.335 47.619 0.00 0.00 44.23 5.01
2614 4754 2.586425 ACATTGTAAGCTGTGTGCCTT 58.414 42.857 0.00 0.00 44.23 4.35
2616 4756 3.004734 ACATTGTAAGCTGTGTGCCTTTC 59.995 43.478 0.00 0.00 44.23 2.62
2617 4757 2.340210 TGTAAGCTGTGTGCCTTTCA 57.660 45.000 0.00 0.00 44.23 2.69
2619 4759 2.553602 TGTAAGCTGTGTGCCTTTCATG 59.446 45.455 0.00 0.00 44.23 3.07
2620 4760 0.316204 AAGCTGTGTGCCTTTCATGC 59.684 50.000 0.00 0.00 44.23 4.06
2621 4761 1.080298 GCTGTGTGCCTTTCATGCC 60.080 57.895 0.00 0.00 35.15 4.40
2684 4829 5.724854 TGAGGCTTAGGTTAAGATAACCACT 59.275 40.000 18.68 9.81 42.69 4.00
2705 4850 6.093219 CCACTACTCCAAGAAATTGTGATCTG 59.907 42.308 0.00 0.00 0.00 2.90
2934 5085 6.110411 ACTCCCTCCGTACCAAAATATATG 57.890 41.667 0.00 0.00 0.00 1.78
2935 5086 5.012768 ACTCCCTCCGTACCAAAATATATGG 59.987 44.000 6.03 6.03 43.84 2.74
2936 5087 4.007659 CCCTCCGTACCAAAATATATGGC 58.992 47.826 7.26 0.00 41.89 4.40
2937 5088 3.682858 CCTCCGTACCAAAATATATGGCG 59.317 47.826 7.26 4.60 41.89 5.69
2938 5089 4.312443 CTCCGTACCAAAATATATGGCGT 58.688 43.478 7.26 0.00 41.89 5.68
2939 5090 4.706035 TCCGTACCAAAATATATGGCGTT 58.294 39.130 7.26 0.00 41.89 4.84
2940 5091 5.124645 TCCGTACCAAAATATATGGCGTTT 58.875 37.500 7.26 0.00 41.89 3.60
2942 5093 6.095160 TCCGTACCAAAATATATGGCGTTTTT 59.905 34.615 7.26 0.00 41.89 1.94
2943 5094 6.197468 CCGTACCAAAATATATGGCGTTTTTG 59.803 38.462 7.26 7.72 41.89 2.44
2946 5097 9.228636 GTACCAAAATATATGGCGTTTTTGTAG 57.771 33.333 11.90 3.51 41.89 2.74
3003 5289 3.060602 GAGCTAATATGCCTGACGAACC 58.939 50.000 0.00 0.00 0.00 3.62
3045 5331 1.001633 GGCTCTAAAGGACGACCAACA 59.998 52.381 6.71 0.00 38.94 3.33
3054 5340 4.487714 AGGACGACCAACATACATTCAT 57.512 40.909 6.71 0.00 38.94 2.57
3078 5364 5.299279 TCATCACCTGACAAAAGAAACTTCC 59.701 40.000 0.00 0.00 0.00 3.46
3087 5373 7.414436 TGACAAAAGAAACTTCCGAACTAATG 58.586 34.615 0.00 0.00 0.00 1.90
3133 5419 7.504924 TCCCATTTATCACGTTTTGGATATC 57.495 36.000 0.00 0.00 0.00 1.63
3216 5503 3.503363 CACATGAACTGGCTTCTGCTAAA 59.497 43.478 0.00 0.00 39.59 1.85
3222 5509 6.106673 TGAACTGGCTTCTGCTAAATACTAC 58.893 40.000 0.00 0.00 39.59 2.73
3223 5510 5.941555 ACTGGCTTCTGCTAAATACTACT 57.058 39.130 0.00 0.00 39.59 2.57
3224 5511 5.908341 ACTGGCTTCTGCTAAATACTACTC 58.092 41.667 0.00 0.00 39.59 2.59
3225 5512 5.163395 ACTGGCTTCTGCTAAATACTACTCC 60.163 44.000 0.00 0.00 39.59 3.85
3226 5513 4.101119 TGGCTTCTGCTAAATACTACTCCC 59.899 45.833 0.00 0.00 39.59 4.30
3227 5514 4.345547 GGCTTCTGCTAAATACTACTCCCT 59.654 45.833 0.00 0.00 39.59 4.20
3228 5515 5.510009 GGCTTCTGCTAAATACTACTCCCTC 60.510 48.000 0.00 0.00 39.59 4.30
3229 5516 5.510009 GCTTCTGCTAAATACTACTCCCTCC 60.510 48.000 0.00 0.00 36.03 4.30
3230 5517 4.142790 TCTGCTAAATACTACTCCCTCCG 58.857 47.826 0.00 0.00 0.00 4.63
3231 5518 3.890147 CTGCTAAATACTACTCCCTCCGT 59.110 47.826 0.00 0.00 0.00 4.69
3232 5519 4.284178 TGCTAAATACTACTCCCTCCGTT 58.716 43.478 0.00 0.00 0.00 4.44
3233 5520 4.340381 TGCTAAATACTACTCCCTCCGTTC 59.660 45.833 0.00 0.00 0.00 3.95
3234 5521 4.583907 GCTAAATACTACTCCCTCCGTTCT 59.416 45.833 0.00 0.00 0.00 3.01
3235 5522 5.767168 GCTAAATACTACTCCCTCCGTTCTA 59.233 44.000 0.00 0.00 0.00 2.10
3236 5523 6.264067 GCTAAATACTACTCCCTCCGTTCTAA 59.736 42.308 0.00 0.00 0.00 2.10
3237 5524 7.201857 GCTAAATACTACTCCCTCCGTTCTAAA 60.202 40.741 0.00 0.00 0.00 1.85
3238 5525 7.486407 AAATACTACTCCCTCCGTTCTAAAA 57.514 36.000 0.00 0.00 0.00 1.52
3239 5526 7.672122 AATACTACTCCCTCCGTTCTAAAAT 57.328 36.000 0.00 0.00 0.00 1.82
3240 5527 8.773033 AATACTACTCCCTCCGTTCTAAAATA 57.227 34.615 0.00 0.00 0.00 1.40
3241 5528 6.712179 ACTACTCCCTCCGTTCTAAAATAG 57.288 41.667 0.00 0.00 0.00 1.73
3242 5529 6.430007 ACTACTCCCTCCGTTCTAAAATAGA 58.570 40.000 0.00 0.00 0.00 1.98
3243 5530 7.068061 ACTACTCCCTCCGTTCTAAAATAGAT 58.932 38.462 0.00 0.00 34.22 1.98
3244 5531 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
3245 5532 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
3246 5533 6.158023 TCCCTCCGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
3247 5534 5.897824 TCCCTCCGTTCTAAAATAGATGACT 59.102 40.000 0.00 0.00 34.22 3.41
3248 5535 6.040616 TCCCTCCGTTCTAAAATAGATGACTC 59.959 42.308 0.00 0.00 34.22 3.36
3249 5536 6.183360 CCCTCCGTTCTAAAATAGATGACTCA 60.183 42.308 0.00 0.00 34.22 3.41
3250 5537 7.265673 CCTCCGTTCTAAAATAGATGACTCAA 58.734 38.462 0.00 0.00 34.22 3.02
3251 5538 7.928706 CCTCCGTTCTAAAATAGATGACTCAAT 59.071 37.037 0.00 0.00 34.22 2.57
3252 5539 9.319143 CTCCGTTCTAAAATAGATGACTCAATT 57.681 33.333 0.00 0.00 34.22 2.32
3253 5540 9.667107 TCCGTTCTAAAATAGATGACTCAATTT 57.333 29.630 0.00 0.00 34.22 1.82
3296 5583 6.683974 AGTTGGATCATCTATTTTGGAACG 57.316 37.500 0.00 0.00 0.00 3.95
3297 5584 5.590259 AGTTGGATCATCTATTTTGGAACGG 59.410 40.000 0.00 0.00 0.00 4.44
3298 5585 5.366482 TGGATCATCTATTTTGGAACGGA 57.634 39.130 0.00 0.00 0.00 4.69
3299 5586 5.368145 TGGATCATCTATTTTGGAACGGAG 58.632 41.667 0.00 0.00 0.00 4.63
3300 5587 4.757149 GGATCATCTATTTTGGAACGGAGG 59.243 45.833 0.00 0.00 0.00 4.30
3301 5588 4.150897 TCATCTATTTTGGAACGGAGGG 57.849 45.455 0.00 0.00 0.00 4.30
3302 5589 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
3303 5590 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
3304 5591 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
3305 5592 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
3306 5593 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
3307 5594 0.611714 TTTGGAACGGAGGGAGTAGC 59.388 55.000 0.00 0.00 0.00 3.58
3308 5595 0.543410 TTGGAACGGAGGGAGTAGCA 60.543 55.000 0.00 0.00 0.00 3.49
3309 5596 0.970937 TGGAACGGAGGGAGTAGCAG 60.971 60.000 0.00 0.00 0.00 4.24
3310 5597 0.971447 GGAACGGAGGGAGTAGCAGT 60.971 60.000 0.00 0.00 0.00 4.40
3311 5598 0.896226 GAACGGAGGGAGTAGCAGTT 59.104 55.000 0.00 0.00 0.00 3.16
3312 5599 2.097825 GAACGGAGGGAGTAGCAGTTA 58.902 52.381 0.00 0.00 0.00 2.24
3313 5600 1.765230 ACGGAGGGAGTAGCAGTTAG 58.235 55.000 0.00 0.00 0.00 2.34
3314 5601 0.386113 CGGAGGGAGTAGCAGTTAGC 59.614 60.000 0.00 0.00 46.19 3.09
3328 5615 4.354587 GCAGTTAGCAATACCAAATGAGC 58.645 43.478 0.00 0.00 44.79 4.26
3329 5616 4.096984 GCAGTTAGCAATACCAAATGAGCT 59.903 41.667 0.00 0.00 44.79 4.09
3330 5617 5.393461 GCAGTTAGCAATACCAAATGAGCTT 60.393 40.000 0.00 0.00 44.79 3.74
3331 5618 6.624423 CAGTTAGCAATACCAAATGAGCTTT 58.376 36.000 0.00 0.00 33.83 3.51
3332 5619 7.628366 GCAGTTAGCAATACCAAATGAGCTTTA 60.628 37.037 0.00 0.00 44.79 1.85
3333 5620 7.698130 CAGTTAGCAATACCAAATGAGCTTTAC 59.302 37.037 0.00 0.00 33.83 2.01
3334 5621 7.611855 AGTTAGCAATACCAAATGAGCTTTACT 59.388 33.333 0.00 0.00 33.83 2.24
3335 5622 8.889717 GTTAGCAATACCAAATGAGCTTTACTA 58.110 33.333 0.00 0.00 33.83 1.82
3336 5623 7.938140 AGCAATACCAAATGAGCTTTACTAA 57.062 32.000 0.00 0.00 0.00 2.24
3337 5624 8.525290 AGCAATACCAAATGAGCTTTACTAAT 57.475 30.769 0.00 0.00 0.00 1.73
3338 5625 9.627123 AGCAATACCAAATGAGCTTTACTAATA 57.373 29.630 0.00 0.00 0.00 0.98
3339 5626 9.665264 GCAATACCAAATGAGCTTTACTAATAC 57.335 33.333 0.00 0.00 0.00 1.89
3344 5631 8.947115 ACCAAATGAGCTTTACTAATACAAGAC 58.053 33.333 0.00 0.00 0.00 3.01
3345 5632 9.167311 CCAAATGAGCTTTACTAATACAAGACT 57.833 33.333 0.00 0.00 0.00 3.24
3361 5648 6.115448 ACAAGACTAATATACCTGATGGCC 57.885 41.667 0.00 0.00 36.63 5.36
3362 5649 5.606749 ACAAGACTAATATACCTGATGGCCA 59.393 40.000 8.56 8.56 36.63 5.36
3363 5650 6.101150 ACAAGACTAATATACCTGATGGCCAA 59.899 38.462 10.96 0.00 36.63 4.52
3364 5651 6.959606 AGACTAATATACCTGATGGCCAAT 57.040 37.500 10.96 0.00 36.63 3.16
3365 5652 6.715280 AGACTAATATACCTGATGGCCAATG 58.285 40.000 10.96 2.26 36.63 2.82
3366 5653 6.273260 AGACTAATATACCTGATGGCCAATGT 59.727 38.462 10.96 7.32 36.63 2.71
3367 5654 7.457852 AGACTAATATACCTGATGGCCAATGTA 59.542 37.037 10.96 9.52 36.63 2.29
3368 5655 7.394816 ACTAATATACCTGATGGCCAATGTAC 58.605 38.462 10.96 0.00 36.63 2.90
3369 5656 5.841267 ATATACCTGATGGCCAATGTACA 57.159 39.130 10.96 0.00 36.63 2.90
3370 5657 2.897271 ACCTGATGGCCAATGTACAA 57.103 45.000 10.96 0.00 36.63 2.41
3371 5658 2.726821 ACCTGATGGCCAATGTACAAG 58.273 47.619 10.96 2.05 36.63 3.16
3372 5659 1.406539 CCTGATGGCCAATGTACAAGC 59.593 52.381 10.96 3.31 0.00 4.01
3373 5660 2.093890 CTGATGGCCAATGTACAAGCA 58.906 47.619 10.96 0.00 0.00 3.91
3374 5661 1.818060 TGATGGCCAATGTACAAGCAC 59.182 47.619 10.96 7.46 0.00 4.40
3375 5662 1.134946 GATGGCCAATGTACAAGCACC 59.865 52.381 10.96 9.11 0.00 5.01
3376 5663 0.178978 TGGCCAATGTACAAGCACCA 60.179 50.000 0.61 11.23 0.00 4.17
3377 5664 1.185315 GGCCAATGTACAAGCACCAT 58.815 50.000 15.24 0.00 0.00 3.55
3378 5665 1.134946 GGCCAATGTACAAGCACCATC 59.865 52.381 15.24 0.00 0.00 3.51
3379 5666 1.818060 GCCAATGTACAAGCACCATCA 59.182 47.619 0.00 0.00 0.00 3.07
3380 5667 2.415893 GCCAATGTACAAGCACCATCAC 60.416 50.000 0.00 0.00 0.00 3.06
3381 5668 3.084039 CCAATGTACAAGCACCATCACT 58.916 45.455 0.00 0.00 0.00 3.41
3382 5669 3.119743 CCAATGTACAAGCACCATCACTG 60.120 47.826 0.00 0.00 0.00 3.66
3384 5671 1.696884 TGTACAAGCACCATCACTGGA 59.303 47.619 0.00 0.00 46.37 3.86
3385 5672 2.105649 TGTACAAGCACCATCACTGGAA 59.894 45.455 0.00 0.00 46.37 3.53
3386 5673 1.609208 ACAAGCACCATCACTGGAAC 58.391 50.000 0.00 0.00 46.37 3.62
3387 5674 1.133823 ACAAGCACCATCACTGGAACA 60.134 47.619 0.00 0.00 46.37 3.18
3388 5675 1.955778 CAAGCACCATCACTGGAACAA 59.044 47.619 0.00 0.00 46.37 2.83
3389 5676 2.361757 CAAGCACCATCACTGGAACAAA 59.638 45.455 0.00 0.00 46.37 2.83
3390 5677 2.665165 AGCACCATCACTGGAACAAAA 58.335 42.857 0.00 0.00 46.37 2.44
3391 5678 3.030291 AGCACCATCACTGGAACAAAAA 58.970 40.909 0.00 0.00 46.37 1.94
3411 5698 4.351874 AAAAAGGACTTCCGATCTGACA 57.648 40.909 0.00 0.00 42.08 3.58
3412 5699 4.351874 AAAAGGACTTCCGATCTGACAA 57.648 40.909 0.00 0.00 42.08 3.18
3413 5700 3.320673 AAGGACTTCCGATCTGACAAC 57.679 47.619 0.00 0.00 42.08 3.32
3414 5701 1.550976 AGGACTTCCGATCTGACAACC 59.449 52.381 0.00 0.00 42.08 3.77
3415 5702 1.275291 GGACTTCCGATCTGACAACCA 59.725 52.381 0.00 0.00 0.00 3.67
3416 5703 2.611518 GACTTCCGATCTGACAACCAG 58.388 52.381 0.00 0.00 44.27 4.00
3417 5704 1.971357 ACTTCCGATCTGACAACCAGT 59.029 47.619 0.00 0.00 43.38 4.00
3418 5705 3.162666 ACTTCCGATCTGACAACCAGTA 58.837 45.455 0.00 0.00 43.38 2.74
3419 5706 3.056749 ACTTCCGATCTGACAACCAGTAC 60.057 47.826 0.00 0.00 43.38 2.73
3420 5707 2.803956 TCCGATCTGACAACCAGTACT 58.196 47.619 0.00 0.00 43.38 2.73
3421 5708 2.753452 TCCGATCTGACAACCAGTACTC 59.247 50.000 0.00 0.00 43.38 2.59
3422 5709 2.492088 CCGATCTGACAACCAGTACTCA 59.508 50.000 0.00 0.00 43.38 3.41
3423 5710 3.428180 CCGATCTGACAACCAGTACTCAG 60.428 52.174 0.00 0.00 43.38 3.35
3424 5711 3.516615 GATCTGACAACCAGTACTCAGC 58.483 50.000 0.00 0.00 43.38 4.26
3425 5712 2.598565 TCTGACAACCAGTACTCAGCT 58.401 47.619 0.00 0.00 43.38 4.24
3426 5713 2.965831 TCTGACAACCAGTACTCAGCTT 59.034 45.455 0.00 0.00 43.38 3.74
3427 5714 4.149598 TCTGACAACCAGTACTCAGCTTA 58.850 43.478 0.00 0.00 43.38 3.09
3428 5715 4.772624 TCTGACAACCAGTACTCAGCTTAT 59.227 41.667 0.00 0.00 43.38 1.73
3429 5716 5.246203 TCTGACAACCAGTACTCAGCTTATT 59.754 40.000 0.00 0.00 43.38 1.40
3430 5717 6.436218 TCTGACAACCAGTACTCAGCTTATTA 59.564 38.462 0.00 0.00 43.38 0.98
3431 5718 6.395629 TGACAACCAGTACTCAGCTTATTAC 58.604 40.000 0.00 0.00 0.00 1.89
3432 5719 5.731591 ACAACCAGTACTCAGCTTATTACC 58.268 41.667 0.00 0.00 0.00 2.85
3433 5720 5.116882 CAACCAGTACTCAGCTTATTACCC 58.883 45.833 0.00 0.00 0.00 3.69
3434 5721 3.710165 ACCAGTACTCAGCTTATTACCCC 59.290 47.826 0.00 0.00 0.00 4.95
3435 5722 3.243771 CCAGTACTCAGCTTATTACCCCG 60.244 52.174 0.00 0.00 0.00 5.73
3436 5723 3.383825 CAGTACTCAGCTTATTACCCCGT 59.616 47.826 0.00 0.00 0.00 5.28
3437 5724 4.028825 AGTACTCAGCTTATTACCCCGTT 58.971 43.478 0.00 0.00 0.00 4.44
3438 5725 3.994931 ACTCAGCTTATTACCCCGTTT 57.005 42.857 0.00 0.00 0.00 3.60
3439 5726 5.658190 AGTACTCAGCTTATTACCCCGTTTA 59.342 40.000 0.00 0.00 0.00 2.01
3440 5727 5.625568 ACTCAGCTTATTACCCCGTTTAT 57.374 39.130 0.00 0.00 0.00 1.40
3441 5728 6.736110 ACTCAGCTTATTACCCCGTTTATA 57.264 37.500 0.00 0.00 0.00 0.98
3442 5729 7.128234 ACTCAGCTTATTACCCCGTTTATAA 57.872 36.000 0.00 0.00 0.00 0.98
3443 5730 7.742767 ACTCAGCTTATTACCCCGTTTATAAT 58.257 34.615 0.00 0.00 0.00 1.28
3444 5731 7.660208 ACTCAGCTTATTACCCCGTTTATAATG 59.340 37.037 0.00 0.00 0.00 1.90
3445 5732 7.511268 TCAGCTTATTACCCCGTTTATAATGT 58.489 34.615 0.00 0.00 0.00 2.71
3446 5733 7.658575 TCAGCTTATTACCCCGTTTATAATGTC 59.341 37.037 0.00 0.00 0.00 3.06
3447 5734 7.660208 CAGCTTATTACCCCGTTTATAATGTCT 59.340 37.037 0.00 0.00 0.00 3.41
3448 5735 7.660208 AGCTTATTACCCCGTTTATAATGTCTG 59.340 37.037 0.00 0.00 0.00 3.51
3449 5736 7.443272 GCTTATTACCCCGTTTATAATGTCTGT 59.557 37.037 0.00 0.00 0.00 3.41
3450 5737 9.985730 CTTATTACCCCGTTTATAATGTCTGTA 57.014 33.333 0.00 0.00 0.00 2.74
3451 5738 9.762933 TTATTACCCCGTTTATAATGTCTGTAC 57.237 33.333 0.00 0.00 0.00 2.90
3452 5739 5.945144 ACCCCGTTTATAATGTCTGTACT 57.055 39.130 0.00 0.00 0.00 2.73
3453 5740 8.532186 TTACCCCGTTTATAATGTCTGTACTA 57.468 34.615 0.00 0.00 0.00 1.82
3454 5741 7.607615 ACCCCGTTTATAATGTCTGTACTAT 57.392 36.000 0.00 0.00 0.00 2.12
3455 5742 7.439381 ACCCCGTTTATAATGTCTGTACTATG 58.561 38.462 0.00 0.00 0.00 2.23
3456 5743 6.872020 CCCCGTTTATAATGTCTGTACTATGG 59.128 42.308 0.00 0.00 0.00 2.74
3457 5744 7.256048 CCCCGTTTATAATGTCTGTACTATGGA 60.256 40.741 0.00 0.00 0.00 3.41
3458 5745 8.145767 CCCGTTTATAATGTCTGTACTATGGAA 58.854 37.037 0.00 0.00 0.00 3.53
3459 5746 8.975439 CCGTTTATAATGTCTGTACTATGGAAC 58.025 37.037 0.00 0.00 0.00 3.62
3460 5747 9.745880 CGTTTATAATGTCTGTACTATGGAACT 57.254 33.333 0.00 0.00 0.00 3.01
3463 5750 9.542462 TTATAATGTCTGTACTATGGAACTTGC 57.458 33.333 0.00 0.00 0.00 4.01
3464 5751 4.882842 TGTCTGTACTATGGAACTTGCA 57.117 40.909 0.00 0.00 0.00 4.08
3465 5752 5.222079 TGTCTGTACTATGGAACTTGCAA 57.778 39.130 0.00 0.00 0.00 4.08
3466 5753 4.994852 TGTCTGTACTATGGAACTTGCAAC 59.005 41.667 0.00 0.00 0.00 4.17
3467 5754 4.392138 GTCTGTACTATGGAACTTGCAACC 59.608 45.833 0.00 0.00 0.00 3.77
3468 5755 4.286032 TCTGTACTATGGAACTTGCAACCT 59.714 41.667 0.00 0.00 0.00 3.50
3469 5756 4.980573 TGTACTATGGAACTTGCAACCTT 58.019 39.130 0.00 0.00 0.00 3.50
3470 5757 4.759693 TGTACTATGGAACTTGCAACCTTG 59.240 41.667 0.00 0.00 0.00 3.61
3471 5758 4.098914 ACTATGGAACTTGCAACCTTGA 57.901 40.909 0.00 0.00 0.00 3.02
3472 5759 4.666512 ACTATGGAACTTGCAACCTTGAT 58.333 39.130 0.00 0.00 0.00 2.57
3473 5760 4.702131 ACTATGGAACTTGCAACCTTGATC 59.298 41.667 0.00 0.00 0.00 2.92
3474 5761 2.942804 TGGAACTTGCAACCTTGATCA 58.057 42.857 0.00 0.00 0.00 2.92
3475 5762 2.622942 TGGAACTTGCAACCTTGATCAC 59.377 45.455 0.00 0.00 0.00 3.06
3476 5763 2.622942 GGAACTTGCAACCTTGATCACA 59.377 45.455 0.00 0.00 0.00 3.58
3477 5764 3.550842 GGAACTTGCAACCTTGATCACAC 60.551 47.826 0.00 0.00 0.00 3.82
3478 5765 1.603802 ACTTGCAACCTTGATCACACG 59.396 47.619 0.00 0.00 0.00 4.49
3479 5766 1.872952 CTTGCAACCTTGATCACACGA 59.127 47.619 0.00 0.00 0.00 4.35
3480 5767 1.225855 TGCAACCTTGATCACACGAC 58.774 50.000 0.00 0.00 0.00 4.34
3481 5768 0.517316 GCAACCTTGATCACACGACC 59.483 55.000 0.00 0.00 0.00 4.79
3482 5769 1.156736 CAACCTTGATCACACGACCC 58.843 55.000 0.00 0.00 0.00 4.46
3483 5770 0.036306 AACCTTGATCACACGACCCC 59.964 55.000 0.00 0.00 0.00 4.95
3484 5771 1.078426 CCTTGATCACACGACCCCC 60.078 63.158 0.00 0.00 0.00 5.40
3498 5785 4.711799 CCCCCATACTACGACCCA 57.288 61.111 0.00 0.00 0.00 4.51
3499 5786 2.437625 CCCCCATACTACGACCCAG 58.562 63.158 0.00 0.00 0.00 4.45
3500 5787 0.105862 CCCCCATACTACGACCCAGA 60.106 60.000 0.00 0.00 0.00 3.86
3501 5788 1.329256 CCCCATACTACGACCCAGAG 58.671 60.000 0.00 0.00 0.00 3.35
3502 5789 1.133575 CCCCATACTACGACCCAGAGA 60.134 57.143 0.00 0.00 0.00 3.10
3503 5790 1.955080 CCCATACTACGACCCAGAGAC 59.045 57.143 0.00 0.00 0.00 3.36
3504 5791 2.651455 CCATACTACGACCCAGAGACA 58.349 52.381 0.00 0.00 0.00 3.41
3505 5792 3.021695 CCATACTACGACCCAGAGACAA 58.978 50.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.878667 TTTTTCTAAATCGGATGTATGTAGACA 57.121 29.630 0.00 0.00 0.00 3.41
34 35 9.327731 CTCCCTCCCTTTACTATTATAAGATGT 57.672 37.037 0.00 0.00 0.00 3.06
35 36 9.327731 ACTCCCTCCCTTTACTATTATAAGATG 57.672 37.037 0.00 0.00 0.00 2.90
41 42 7.956881 CCTCTTACTCCCTCCCTTTACTATTAT 59.043 40.741 0.00 0.00 0.00 1.28
42 43 7.303713 CCTCTTACTCCCTCCCTTTACTATTA 58.696 42.308 0.00 0.00 0.00 0.98
43 44 6.144625 CCTCTTACTCCCTCCCTTTACTATT 58.855 44.000 0.00 0.00 0.00 1.73
44 45 5.718039 CCTCTTACTCCCTCCCTTTACTAT 58.282 45.833 0.00 0.00 0.00 2.12
45 46 4.633153 GCCTCTTACTCCCTCCCTTTACTA 60.633 50.000 0.00 0.00 0.00 1.82
46 47 3.886548 GCCTCTTACTCCCTCCCTTTACT 60.887 52.174 0.00 0.00 0.00 2.24
47 48 2.435069 GCCTCTTACTCCCTCCCTTTAC 59.565 54.545 0.00 0.00 0.00 2.01
48 49 2.045326 TGCCTCTTACTCCCTCCCTTTA 59.955 50.000 0.00 0.00 0.00 1.85
49 50 1.203440 TGCCTCTTACTCCCTCCCTTT 60.203 52.381 0.00 0.00 0.00 3.11
50 51 0.417841 TGCCTCTTACTCCCTCCCTT 59.582 55.000 0.00 0.00 0.00 3.95
51 52 0.644937 ATGCCTCTTACTCCCTCCCT 59.355 55.000 0.00 0.00 0.00 4.20
52 53 1.052617 GATGCCTCTTACTCCCTCCC 58.947 60.000 0.00 0.00 0.00 4.30
53 54 1.691434 CTGATGCCTCTTACTCCCTCC 59.309 57.143 0.00 0.00 0.00 4.30
54 55 2.672098 TCTGATGCCTCTTACTCCCTC 58.328 52.381 0.00 0.00 0.00 4.30
55 56 2.856760 TCTGATGCCTCTTACTCCCT 57.143 50.000 0.00 0.00 0.00 4.20
56 57 4.345257 TGTATTCTGATGCCTCTTACTCCC 59.655 45.833 0.00 0.00 0.00 4.30
57 58 5.537300 TGTATTCTGATGCCTCTTACTCC 57.463 43.478 0.00 0.00 0.00 3.85
58 59 7.849804 TTTTGTATTCTGATGCCTCTTACTC 57.150 36.000 0.00 0.00 0.00 2.59
59 60 9.905713 TTATTTTGTATTCTGATGCCTCTTACT 57.094 29.630 0.00 0.00 0.00 2.24
64 65 9.565213 GCATATTATTTTGTATTCTGATGCCTC 57.435 33.333 0.00 0.00 31.89 4.70
109 117 3.091545 ACATGGTTTGTCAGGCCTAATG 58.908 45.455 3.98 0.00 30.89 1.90
148 156 6.569179 TGTACATTGGTCCTTCTTTAAAGC 57.431 37.500 10.51 0.00 0.00 3.51
159 167 1.904287 TGGTGCTTGTACATTGGTCC 58.096 50.000 0.00 0.00 0.00 4.46
210 218 8.859090 CCATATGTTGGGTACATGATTGTTTAT 58.141 33.333 0.00 0.00 46.81 1.40
211 219 8.055790 TCCATATGTTGGGTACATGATTGTTTA 58.944 33.333 0.00 0.00 46.81 2.01
225 233 3.003394 TCTGCTTGTCCATATGTTGGG 57.997 47.619 1.24 0.00 46.45 4.12
233 241 1.421268 TGGTCTGTTCTGCTTGTCCAT 59.579 47.619 0.00 0.00 0.00 3.41
255 267 9.113838 GGTTTGACATATAATCTGAACACTGAT 57.886 33.333 0.00 0.00 0.00 2.90
266 278 7.201821 CCACCTTCTTGGGTTTGACATATAATC 60.202 40.741 0.00 0.00 41.11 1.75
267 279 6.607198 CCACCTTCTTGGGTTTGACATATAAT 59.393 38.462 0.00 0.00 41.11 1.28
271 283 3.139397 ACCACCTTCTTGGGTTTGACATA 59.861 43.478 0.00 0.00 41.49 2.29
273 285 1.286553 ACCACCTTCTTGGGTTTGACA 59.713 47.619 0.00 0.00 41.49 3.58
275 287 5.789574 ATATACCACCTTCTTGGGTTTGA 57.210 39.130 0.00 0.00 41.49 2.69
276 288 5.949354 TGAATATACCACCTTCTTGGGTTTG 59.051 40.000 0.00 0.00 41.49 2.93
277 289 5.949952 GTGAATATACCACCTTCTTGGGTTT 59.050 40.000 0.00 0.00 41.49 3.27
278 290 5.253096 AGTGAATATACCACCTTCTTGGGTT 59.747 40.000 0.00 0.00 41.49 4.11
280 292 5.373812 AGTGAATATACCACCTTCTTGGG 57.626 43.478 4.98 0.00 41.49 4.12
281 293 6.316390 GTGAAGTGAATATACCACCTTCTTGG 59.684 42.308 0.00 0.00 43.04 3.61
282 294 6.316390 GGTGAAGTGAATATACCACCTTCTTG 59.684 42.308 0.00 0.00 40.48 3.02
283 295 6.415573 GGTGAAGTGAATATACCACCTTCTT 58.584 40.000 0.00 0.00 40.48 2.52
284 296 5.990668 GGTGAAGTGAATATACCACCTTCT 58.009 41.667 0.00 0.00 40.48 2.85
288 300 5.099042 ACAGGTGAAGTGAATATACCACC 57.901 43.478 0.00 0.00 43.08 4.61
289 301 6.092259 GTGAACAGGTGAAGTGAATATACCAC 59.908 42.308 0.00 1.14 33.88 4.16
290 302 6.170506 GTGAACAGGTGAAGTGAATATACCA 58.829 40.000 0.00 0.00 33.88 3.25
291 303 5.585047 GGTGAACAGGTGAAGTGAATATACC 59.415 44.000 0.00 0.00 0.00 2.73
292 304 5.291128 CGGTGAACAGGTGAAGTGAATATAC 59.709 44.000 0.00 0.00 0.00 1.47
293 305 5.046878 ACGGTGAACAGGTGAAGTGAATATA 60.047 40.000 0.00 0.00 0.00 0.86
294 306 4.253685 CGGTGAACAGGTGAAGTGAATAT 58.746 43.478 0.00 0.00 0.00 1.28
295 307 3.070446 ACGGTGAACAGGTGAAGTGAATA 59.930 43.478 0.00 0.00 0.00 1.75
296 308 2.158813 ACGGTGAACAGGTGAAGTGAAT 60.159 45.455 0.00 0.00 0.00 2.57
297 309 1.208535 ACGGTGAACAGGTGAAGTGAA 59.791 47.619 0.00 0.00 0.00 3.18
298 310 0.828022 ACGGTGAACAGGTGAAGTGA 59.172 50.000 0.00 0.00 0.00 3.41
299 311 2.519377 TACGGTGAACAGGTGAAGTG 57.481 50.000 0.00 0.00 0.00 3.16
300 312 2.168936 TGTTACGGTGAACAGGTGAAGT 59.831 45.455 0.00 0.00 34.40 3.01
301 313 2.828877 TGTTACGGTGAACAGGTGAAG 58.171 47.619 0.00 0.00 34.40 3.02
302 314 2.983907 TGTTACGGTGAACAGGTGAA 57.016 45.000 0.00 0.00 34.40 3.18
326 338 1.813513 CAATGCTGGTCGGATATCCC 58.186 55.000 16.36 2.77 0.00 3.85
327 339 1.160137 GCAATGCTGGTCGGATATCC 58.840 55.000 12.14 12.14 0.00 2.59
328 340 1.882912 TGCAATGCTGGTCGGATATC 58.117 50.000 6.82 0.00 0.00 1.63
329 341 2.158769 TCTTGCAATGCTGGTCGGATAT 60.159 45.455 6.82 0.00 0.00 1.63
330 342 1.209261 TCTTGCAATGCTGGTCGGATA 59.791 47.619 6.82 0.00 0.00 2.59
331 343 0.035152 TCTTGCAATGCTGGTCGGAT 60.035 50.000 6.82 0.00 0.00 4.18
332 344 0.250684 TTCTTGCAATGCTGGTCGGA 60.251 50.000 6.82 0.00 0.00 4.55
333 345 0.169672 CTTCTTGCAATGCTGGTCGG 59.830 55.000 6.82 0.00 0.00 4.79
334 346 0.169672 CCTTCTTGCAATGCTGGTCG 59.830 55.000 6.82 0.00 0.00 4.79
335 347 1.200948 GTCCTTCTTGCAATGCTGGTC 59.799 52.381 6.82 0.00 0.00 4.02
336 348 1.251251 GTCCTTCTTGCAATGCTGGT 58.749 50.000 6.82 0.00 0.00 4.00
337 349 0.529378 GGTCCTTCTTGCAATGCTGG 59.471 55.000 6.82 0.42 0.00 4.85
338 350 1.201647 CTGGTCCTTCTTGCAATGCTG 59.798 52.381 6.82 0.00 0.00 4.41
339 351 1.074405 TCTGGTCCTTCTTGCAATGCT 59.926 47.619 6.82 0.00 0.00 3.79
340 352 1.200948 GTCTGGTCCTTCTTGCAATGC 59.799 52.381 0.00 0.00 0.00 3.56
341 353 1.815003 GGTCTGGTCCTTCTTGCAATG 59.185 52.381 0.00 0.00 0.00 2.82
342 354 1.425066 TGGTCTGGTCCTTCTTGCAAT 59.575 47.619 0.00 0.00 0.00 3.56
343 355 0.843309 TGGTCTGGTCCTTCTTGCAA 59.157 50.000 0.00 0.00 0.00 4.08
344 356 1.067295 ATGGTCTGGTCCTTCTTGCA 58.933 50.000 0.00 0.00 0.00 4.08
345 357 2.206576 AATGGTCTGGTCCTTCTTGC 57.793 50.000 0.00 0.00 0.00 4.01
346 358 3.305608 GCAAAATGGTCTGGTCCTTCTTG 60.306 47.826 0.00 0.00 0.00 3.02
347 359 2.893489 GCAAAATGGTCTGGTCCTTCTT 59.107 45.455 0.00 0.00 0.00 2.52
348 360 2.108952 AGCAAAATGGTCTGGTCCTTCT 59.891 45.455 0.00 0.00 0.00 2.85
349 361 2.229784 CAGCAAAATGGTCTGGTCCTTC 59.770 50.000 0.00 0.00 0.00 3.46
350 362 2.242043 CAGCAAAATGGTCTGGTCCTT 58.758 47.619 0.00 0.00 0.00 3.36
351 363 1.145738 ACAGCAAAATGGTCTGGTCCT 59.854 47.619 0.00 0.00 32.42 3.85
352 364 1.270550 CACAGCAAAATGGTCTGGTCC 59.729 52.381 0.00 0.00 32.42 4.46
353 365 1.270550 CCACAGCAAAATGGTCTGGTC 59.729 52.381 0.00 0.00 30.75 4.02
354 366 1.133513 TCCACAGCAAAATGGTCTGGT 60.134 47.619 4.22 0.00 35.76 4.00
355 367 1.619654 TCCACAGCAAAATGGTCTGG 58.380 50.000 0.00 0.00 35.63 3.86
356 368 2.886523 TCTTCCACAGCAAAATGGTCTG 59.113 45.455 0.00 0.00 37.27 3.51
357 369 2.887152 GTCTTCCACAGCAAAATGGTCT 59.113 45.455 0.00 0.00 37.27 3.85
358 370 2.887152 AGTCTTCCACAGCAAAATGGTC 59.113 45.455 0.00 0.00 37.27 4.02
359 371 2.949447 AGTCTTCCACAGCAAAATGGT 58.051 42.857 0.00 0.00 37.27 3.55
360 372 3.905784 GAAGTCTTCCACAGCAAAATGG 58.094 45.455 0.64 0.00 37.32 3.16
383 395 2.431954 AGTAGCGGCAGTAGGAACTA 57.568 50.000 1.45 0.00 41.75 2.24
385 397 2.022934 AGTAGTAGCGGCAGTAGGAAC 58.977 52.381 1.45 0.00 0.00 3.62
387 399 1.211212 TGAGTAGTAGCGGCAGTAGGA 59.789 52.381 1.45 0.00 0.00 2.94
388 400 1.334243 GTGAGTAGTAGCGGCAGTAGG 59.666 57.143 1.45 0.00 0.00 3.18
389 401 1.334243 GGTGAGTAGTAGCGGCAGTAG 59.666 57.143 1.45 0.00 0.00 2.57
390 402 1.340308 TGGTGAGTAGTAGCGGCAGTA 60.340 52.381 1.45 0.00 0.00 2.74
391 403 0.611062 TGGTGAGTAGTAGCGGCAGT 60.611 55.000 1.45 0.00 0.00 4.40
392 404 0.747255 ATGGTGAGTAGTAGCGGCAG 59.253 55.000 1.45 0.00 0.00 4.85
393 405 1.136305 GAATGGTGAGTAGTAGCGGCA 59.864 52.381 1.45 0.00 0.00 5.69
394 406 1.409427 AGAATGGTGAGTAGTAGCGGC 59.591 52.381 0.00 0.00 0.00 6.53
395 407 3.491104 GGAAGAATGGTGAGTAGTAGCGG 60.491 52.174 0.00 0.00 0.00 5.52
396 408 3.130516 TGGAAGAATGGTGAGTAGTAGCG 59.869 47.826 0.00 0.00 0.00 4.26
397 409 4.737855 TGGAAGAATGGTGAGTAGTAGC 57.262 45.455 0.00 0.00 0.00 3.58
435 447 4.776322 CCCGACATTCCGCTGCCA 62.776 66.667 0.00 0.00 0.00 4.92
444 456 1.191535 TCGAGATCAACCCCGACATT 58.808 50.000 0.00 0.00 0.00 2.71
513 525 1.376553 GCTGCTCAGACAGGGGAAC 60.377 63.158 0.29 0.00 38.16 3.62
566 580 5.053978 AGGACTTCAGAGGTTGAATTGTT 57.946 39.130 0.00 0.00 44.48 2.83
605 627 3.118665 GCTCCTCTTCTGCTGATTTCTCT 60.119 47.826 0.00 0.00 0.00 3.10
873 897 2.445845 CCCGGCCTCCATGTCCTA 60.446 66.667 0.00 0.00 0.00 2.94
1080 1125 1.607467 CCAAGGCCAAGGGGAACAG 60.607 63.158 5.01 0.00 35.59 3.16
1161 1212 2.441164 GAGGAGGAGGCGCAGAGA 60.441 66.667 10.83 0.00 0.00 3.10
1344 1395 3.744719 TCCACCTCCTCGAACGCG 61.745 66.667 3.53 3.53 39.35 6.01
1417 1468 2.584694 GCTGTAGAGCTGCTCCGC 60.585 66.667 25.09 18.01 42.52 5.54
1844 3029 0.179018 CCCGGTGGAGATCAATTCCC 60.179 60.000 0.00 0.00 33.62 3.97
1860 3045 3.207669 GCTTCAGATGGCAGCCCG 61.208 66.667 9.64 0.00 0.00 6.13
1998 3381 2.519377 TCCAATCGGCGTAACCATAG 57.481 50.000 6.85 0.00 39.03 2.23
2094 3563 3.086391 GCAGATCGCCCTGAGCTCA 62.086 63.158 17.19 17.19 42.71 4.26
2203 3672 1.777272 ACCCTTCTCCTTCAGCAGTTT 59.223 47.619 0.00 0.00 0.00 2.66
2276 4341 2.266055 CCGGTCCCTGAAGCTCAC 59.734 66.667 0.00 0.00 0.00 3.51
2292 4357 0.254178 AGGATGTGACACAGGATGCC 59.746 55.000 14.66 9.67 42.53 4.40
2305 4370 1.561643 TTCTTCCGCAGAGAGGATGT 58.438 50.000 0.00 0.00 37.65 3.06
2546 4686 8.560374 AGGAGACAATAAAAACGAAGAAAAGAG 58.440 33.333 0.00 0.00 0.00 2.85
2563 4703 2.644798 AGGGCTAACAACAGGAGACAAT 59.355 45.455 0.00 0.00 0.00 2.71
2570 4710 0.698818 AAGGGAGGGCTAACAACAGG 59.301 55.000 0.00 0.00 0.00 4.00
2581 4721 1.341080 ACAATGTTGCAAAGGGAGGG 58.659 50.000 0.00 0.00 0.00 4.30
2599 4739 3.207474 CATGAAAGGCACACAGCTTAC 57.793 47.619 0.00 0.00 44.79 2.34
2611 4751 8.853077 TGATATTTACTCTATGGCATGAAAGG 57.147 34.615 10.98 0.00 0.00 3.11
2614 4754 8.605065 TCCATGATATTTACTCTATGGCATGAA 58.395 33.333 10.98 0.00 36.03 2.57
2616 4756 8.671921 GTTCCATGATATTTACTCTATGGCATG 58.328 37.037 10.98 0.16 36.03 4.06
2617 4757 7.831193 GGTTCCATGATATTTACTCTATGGCAT 59.169 37.037 4.88 4.88 36.03 4.40
2619 4759 7.168219 TGGTTCCATGATATTTACTCTATGGC 58.832 38.462 0.00 0.00 36.03 4.40
2620 4760 9.170734 CATGGTTCCATGATATTTACTCTATGG 57.829 37.037 22.88 0.00 44.61 2.74
2621 4761 9.948964 TCATGGTTCCATGATATTTACTCTATG 57.051 33.333 25.03 1.91 45.19 2.23
2649 4794 0.328258 TAAGCCTCAAGCCCTCAACC 59.672 55.000 0.00 0.00 45.47 3.77
2651 4796 0.620556 CCTAAGCCTCAAGCCCTCAA 59.379 55.000 0.00 0.00 45.47 3.02
2654 4799 1.966845 TAACCTAAGCCTCAAGCCCT 58.033 50.000 0.00 0.00 45.47 5.19
2655 4800 2.238898 TCTTAACCTAAGCCTCAAGCCC 59.761 50.000 0.00 0.00 45.47 5.19
2656 4801 3.629142 TCTTAACCTAAGCCTCAAGCC 57.371 47.619 0.00 0.00 45.47 4.35
2657 4802 5.527951 GGTTATCTTAACCTAAGCCTCAAGC 59.472 44.000 8.81 0.00 38.40 4.01
2658 4803 6.539103 GTGGTTATCTTAACCTAAGCCTCAAG 59.461 42.308 15.44 0.00 40.88 3.02
2684 4829 8.102676 TCAATCAGATCACAATTTCTTGGAGTA 58.897 33.333 0.00 0.00 36.64 2.59
2812 4960 7.250569 ACAAAACTGTTCACAACTGACATAAG 58.749 34.615 0.00 0.00 34.78 1.73
2857 5008 9.825972 ATTTCACAAATAGTTGTCTCAATAACG 57.174 29.630 5.41 0.00 45.00 3.18
2871 5022 9.918630 AGGAAGTTCAATCAATTTCACAAATAG 57.081 29.630 5.01 0.00 33.36 1.73
2894 5045 4.230041 AGGGAGTAGTAGTTAGCAGAAGGA 59.770 45.833 0.00 0.00 0.00 3.36
2934 5085 3.189702 TGTATTCTGCCTACAAAAACGCC 59.810 43.478 0.00 0.00 0.00 5.68
2935 5086 4.413495 TGTATTCTGCCTACAAAAACGC 57.587 40.909 0.00 0.00 0.00 4.84
2942 5093 9.674068 TGTGTATTATTTTGTATTCTGCCTACA 57.326 29.630 0.00 0.00 0.00 2.74
2946 5097 9.072294 GTGTTGTGTATTATTTTGTATTCTGCC 57.928 33.333 0.00 0.00 0.00 4.85
2974 5260 6.349363 CGTCAGGCATATTAGCTCACTGTATA 60.349 42.308 0.00 0.00 34.17 1.47
3003 5289 2.586425 ACCTTTCTTGTGACCCACATG 58.414 47.619 0.27 3.92 44.16 3.21
3045 5331 7.830697 TCTTTTGTCAGGTGATGATGAATGTAT 59.169 33.333 0.00 0.00 40.92 2.29
3054 5340 5.299279 GGAAGTTTCTTTTGTCAGGTGATGA 59.701 40.000 0.00 0.00 34.79 2.92
3202 5489 5.293560 GGAGTAGTATTTAGCAGAAGCCAG 58.706 45.833 0.00 0.00 43.56 4.85
3216 5503 8.223330 TCTATTTTAGAACGGAGGGAGTAGTAT 58.777 37.037 0.00 0.00 0.00 2.12
3222 5509 6.041069 AGTCATCTATTTTAGAACGGAGGGAG 59.959 42.308 0.00 0.00 38.50 4.30
3223 5510 5.897824 AGTCATCTATTTTAGAACGGAGGGA 59.102 40.000 0.00 0.00 38.50 4.20
3224 5511 6.163135 AGTCATCTATTTTAGAACGGAGGG 57.837 41.667 0.00 0.00 38.50 4.30
3225 5512 6.806751 TGAGTCATCTATTTTAGAACGGAGG 58.193 40.000 0.00 0.00 38.50 4.30
3226 5513 8.879342 ATTGAGTCATCTATTTTAGAACGGAG 57.121 34.615 0.00 0.00 38.50 4.63
3227 5514 9.667107 AAATTGAGTCATCTATTTTAGAACGGA 57.333 29.630 0.00 0.00 37.52 4.69
3270 5557 8.673711 CGTTCCAAAATAGATGATCCAACTTTA 58.326 33.333 0.00 0.00 0.00 1.85
3271 5558 7.362920 CCGTTCCAAAATAGATGATCCAACTTT 60.363 37.037 0.00 0.00 0.00 2.66
3272 5559 6.095440 CCGTTCCAAAATAGATGATCCAACTT 59.905 38.462 0.00 0.00 0.00 2.66
3273 5560 5.590259 CCGTTCCAAAATAGATGATCCAACT 59.410 40.000 0.00 0.00 0.00 3.16
3274 5561 5.588648 TCCGTTCCAAAATAGATGATCCAAC 59.411 40.000 0.00 0.00 0.00 3.77
3275 5562 5.750524 TCCGTTCCAAAATAGATGATCCAA 58.249 37.500 0.00 0.00 0.00 3.53
3276 5563 5.366482 TCCGTTCCAAAATAGATGATCCA 57.634 39.130 0.00 0.00 0.00 3.41
3277 5564 4.757149 CCTCCGTTCCAAAATAGATGATCC 59.243 45.833 0.00 0.00 0.00 3.36
3278 5565 4.757149 CCCTCCGTTCCAAAATAGATGATC 59.243 45.833 0.00 0.00 0.00 2.92
3279 5566 4.412199 TCCCTCCGTTCCAAAATAGATGAT 59.588 41.667 0.00 0.00 0.00 2.45
3280 5567 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3281 5568 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
3282 5569 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3283 5570 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
3284 5571 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3285 5572 3.118519 GCTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
3286 5573 2.355818 GCTACTCCCTCCGTTCCAAAAT 60.356 50.000 0.00 0.00 0.00 1.82
3287 5574 1.002773 GCTACTCCCTCCGTTCCAAAA 59.997 52.381 0.00 0.00 0.00 2.44
3288 5575 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
3289 5576 0.543410 TGCTACTCCCTCCGTTCCAA 60.543 55.000 0.00 0.00 0.00 3.53
3290 5577 0.970937 CTGCTACTCCCTCCGTTCCA 60.971 60.000 0.00 0.00 0.00 3.53
3291 5578 0.971447 ACTGCTACTCCCTCCGTTCC 60.971 60.000 0.00 0.00 0.00 3.62
3292 5579 0.896226 AACTGCTACTCCCTCCGTTC 59.104 55.000 0.00 0.00 0.00 3.95
3293 5580 2.100989 CTAACTGCTACTCCCTCCGTT 58.899 52.381 0.00 0.00 0.00 4.44
3294 5581 1.765230 CTAACTGCTACTCCCTCCGT 58.235 55.000 0.00 0.00 0.00 4.69
3295 5582 0.386113 GCTAACTGCTACTCCCTCCG 59.614 60.000 0.00 0.00 38.95 4.63
3296 5583 1.486211 TGCTAACTGCTACTCCCTCC 58.514 55.000 0.00 0.00 43.37 4.30
3297 5584 3.828875 ATTGCTAACTGCTACTCCCTC 57.171 47.619 0.00 0.00 43.37 4.30
3298 5585 3.388350 GGTATTGCTAACTGCTACTCCCT 59.612 47.826 0.00 0.00 43.37 4.20
3299 5586 3.134081 TGGTATTGCTAACTGCTACTCCC 59.866 47.826 0.00 0.00 43.37 4.30
3300 5587 4.402056 TGGTATTGCTAACTGCTACTCC 57.598 45.455 0.00 0.00 43.37 3.85
3301 5588 6.538742 TCATTTGGTATTGCTAACTGCTACTC 59.461 38.462 0.00 0.00 43.37 2.59
3302 5589 6.414732 TCATTTGGTATTGCTAACTGCTACT 58.585 36.000 0.00 0.00 43.37 2.57
3303 5590 6.677781 TCATTTGGTATTGCTAACTGCTAC 57.322 37.500 0.00 0.00 43.37 3.58
3304 5591 5.296780 GCTCATTTGGTATTGCTAACTGCTA 59.703 40.000 0.00 0.00 43.37 3.49
3305 5592 4.096984 GCTCATTTGGTATTGCTAACTGCT 59.903 41.667 0.00 0.00 43.37 4.24
3306 5593 4.096984 AGCTCATTTGGTATTGCTAACTGC 59.903 41.667 0.00 0.00 43.25 4.40
3307 5594 5.824904 AGCTCATTTGGTATTGCTAACTG 57.175 39.130 0.00 0.00 0.00 3.16
3308 5595 6.840780 AAAGCTCATTTGGTATTGCTAACT 57.159 33.333 0.00 0.00 0.00 2.24
3309 5596 7.762382 AGTAAAGCTCATTTGGTATTGCTAAC 58.238 34.615 0.00 0.00 32.01 2.34
3310 5597 7.938140 AGTAAAGCTCATTTGGTATTGCTAA 57.062 32.000 0.00 0.00 32.01 3.09
3311 5598 9.627123 ATTAGTAAAGCTCATTTGGTATTGCTA 57.373 29.630 0.00 0.00 32.01 3.49
3312 5599 7.938140 TTAGTAAAGCTCATTTGGTATTGCT 57.062 32.000 0.00 0.00 32.01 3.91
3313 5600 9.665264 GTATTAGTAAAGCTCATTTGGTATTGC 57.335 33.333 0.00 0.00 32.01 3.56
3318 5605 8.947115 GTCTTGTATTAGTAAAGCTCATTTGGT 58.053 33.333 0.00 0.00 32.01 3.67
3319 5606 9.167311 AGTCTTGTATTAGTAAAGCTCATTTGG 57.833 33.333 0.00 0.00 32.01 3.28
3335 5622 8.322091 GGCCATCAGGTATATTAGTCTTGTATT 58.678 37.037 0.00 0.00 37.19 1.89
3336 5623 7.457852 TGGCCATCAGGTATATTAGTCTTGTAT 59.542 37.037 0.00 0.00 37.19 2.29
3337 5624 6.785466 TGGCCATCAGGTATATTAGTCTTGTA 59.215 38.462 0.00 0.00 37.19 2.41
3338 5625 5.606749 TGGCCATCAGGTATATTAGTCTTGT 59.393 40.000 0.00 0.00 37.19 3.16
3339 5626 6.114187 TGGCCATCAGGTATATTAGTCTTG 57.886 41.667 0.00 0.00 37.19 3.02
3340 5627 6.763715 TTGGCCATCAGGTATATTAGTCTT 57.236 37.500 6.09 0.00 37.19 3.01
3341 5628 6.273260 ACATTGGCCATCAGGTATATTAGTCT 59.727 38.462 6.09 0.00 37.19 3.24
3342 5629 6.476378 ACATTGGCCATCAGGTATATTAGTC 58.524 40.000 6.09 0.00 37.19 2.59
3343 5630 6.454223 ACATTGGCCATCAGGTATATTAGT 57.546 37.500 6.09 0.00 37.19 2.24
3344 5631 7.394016 TGTACATTGGCCATCAGGTATATTAG 58.606 38.462 6.09 0.00 37.19 1.73
3345 5632 7.323052 TGTACATTGGCCATCAGGTATATTA 57.677 36.000 6.09 0.00 37.19 0.98
3346 5633 6.199557 TGTACATTGGCCATCAGGTATATT 57.800 37.500 6.09 0.00 37.19 1.28
3347 5634 5.841267 TGTACATTGGCCATCAGGTATAT 57.159 39.130 6.09 0.00 37.19 0.86
3348 5635 5.620206 CTTGTACATTGGCCATCAGGTATA 58.380 41.667 6.09 0.00 37.19 1.47
3349 5636 4.464008 CTTGTACATTGGCCATCAGGTAT 58.536 43.478 6.09 0.00 37.19 2.73
3350 5637 3.884895 CTTGTACATTGGCCATCAGGTA 58.115 45.455 6.09 1.07 37.19 3.08
3351 5638 2.726821 CTTGTACATTGGCCATCAGGT 58.273 47.619 6.09 2.32 37.19 4.00
3352 5639 1.406539 GCTTGTACATTGGCCATCAGG 59.593 52.381 6.09 0.00 38.23 3.86
3353 5640 2.093890 TGCTTGTACATTGGCCATCAG 58.906 47.619 6.09 1.44 0.00 2.90
3354 5641 1.818060 GTGCTTGTACATTGGCCATCA 59.182 47.619 6.09 0.00 0.00 3.07
3355 5642 1.134946 GGTGCTTGTACATTGGCCATC 59.865 52.381 6.09 0.00 0.00 3.51
3356 5643 1.185315 GGTGCTTGTACATTGGCCAT 58.815 50.000 6.09 0.00 0.00 4.40
3357 5644 0.178978 TGGTGCTTGTACATTGGCCA 60.179 50.000 0.00 0.00 0.00 5.36
3358 5645 1.134946 GATGGTGCTTGTACATTGGCC 59.865 52.381 0.00 0.00 0.00 5.36
3359 5646 1.818060 TGATGGTGCTTGTACATTGGC 59.182 47.619 0.00 2.69 0.00 4.52
3360 5647 3.084039 AGTGATGGTGCTTGTACATTGG 58.916 45.455 0.00 0.00 0.00 3.16
3361 5648 3.119743 CCAGTGATGGTGCTTGTACATTG 60.120 47.826 0.00 0.00 0.00 2.82
3362 5649 3.084039 CCAGTGATGGTGCTTGTACATT 58.916 45.455 0.00 0.00 0.00 2.71
3363 5650 2.305635 TCCAGTGATGGTGCTTGTACAT 59.694 45.455 0.00 0.00 0.00 2.29
3364 5651 1.696884 TCCAGTGATGGTGCTTGTACA 59.303 47.619 0.00 0.00 0.00 2.90
3365 5652 2.472695 TCCAGTGATGGTGCTTGTAC 57.527 50.000 0.00 0.00 0.00 2.90
3366 5653 2.105649 TGTTCCAGTGATGGTGCTTGTA 59.894 45.455 0.00 0.00 0.00 2.41
3367 5654 1.133823 TGTTCCAGTGATGGTGCTTGT 60.134 47.619 0.00 0.00 0.00 3.16
3368 5655 1.608055 TGTTCCAGTGATGGTGCTTG 58.392 50.000 0.00 0.00 0.00 4.01
3369 5656 2.363306 TTGTTCCAGTGATGGTGCTT 57.637 45.000 0.00 0.00 0.00 3.91
3370 5657 2.363306 TTTGTTCCAGTGATGGTGCT 57.637 45.000 0.00 0.00 0.00 4.40
3371 5658 3.451141 TTTTTGTTCCAGTGATGGTGC 57.549 42.857 0.00 0.00 0.00 5.01
3390 5677 4.351874 TGTCAGATCGGAAGTCCTTTTT 57.648 40.909 0.00 0.00 0.00 1.94
3391 5678 4.065789 GTTGTCAGATCGGAAGTCCTTTT 58.934 43.478 0.00 0.00 0.00 2.27
3392 5679 3.557264 GGTTGTCAGATCGGAAGTCCTTT 60.557 47.826 0.00 0.00 0.00 3.11
3393 5680 2.028020 GGTTGTCAGATCGGAAGTCCTT 60.028 50.000 0.00 0.00 0.00 3.36
3394 5681 1.550976 GGTTGTCAGATCGGAAGTCCT 59.449 52.381 0.00 0.00 0.00 3.85
3395 5682 1.275291 TGGTTGTCAGATCGGAAGTCC 59.725 52.381 0.00 1.33 0.00 3.85
3396 5683 2.028930 ACTGGTTGTCAGATCGGAAGTC 60.029 50.000 0.00 0.00 46.18 3.01
3397 5684 1.971357 ACTGGTTGTCAGATCGGAAGT 59.029 47.619 0.00 0.00 46.18 3.01
3398 5685 2.751166 ACTGGTTGTCAGATCGGAAG 57.249 50.000 0.00 0.00 46.18 3.46
3399 5686 3.162666 AGTACTGGTTGTCAGATCGGAA 58.837 45.455 0.00 0.00 46.18 4.30
3400 5687 2.753452 GAGTACTGGTTGTCAGATCGGA 59.247 50.000 0.00 0.00 46.18 4.55
3401 5688 2.492088 TGAGTACTGGTTGTCAGATCGG 59.508 50.000 0.00 0.00 46.18 4.18
3402 5689 3.763902 CTGAGTACTGGTTGTCAGATCG 58.236 50.000 0.00 0.00 46.18 3.69
3403 5690 3.194542 AGCTGAGTACTGGTTGTCAGATC 59.805 47.826 0.00 0.00 46.18 2.75
3404 5691 3.169099 AGCTGAGTACTGGTTGTCAGAT 58.831 45.455 0.00 0.00 46.18 2.90
3405 5692 2.598565 AGCTGAGTACTGGTTGTCAGA 58.401 47.619 0.00 0.00 46.18 3.27
3407 5694 5.483685 AATAAGCTGAGTACTGGTTGTCA 57.516 39.130 0.00 0.00 37.06 3.58
3408 5695 5.811100 GGTAATAAGCTGAGTACTGGTTGTC 59.189 44.000 8.55 0.00 37.06 3.18
3409 5696 5.338137 GGGTAATAAGCTGAGTACTGGTTGT 60.338 44.000 8.55 0.00 37.06 3.32
3410 5697 5.116882 GGGTAATAAGCTGAGTACTGGTTG 58.883 45.833 8.55 0.00 37.06 3.77
3411 5698 4.163649 GGGGTAATAAGCTGAGTACTGGTT 59.836 45.833 8.55 1.04 38.68 3.67
3412 5699 3.710165 GGGGTAATAAGCTGAGTACTGGT 59.290 47.826 8.55 0.00 0.00 4.00
3413 5700 3.243771 CGGGGTAATAAGCTGAGTACTGG 60.244 52.174 8.55 0.00 0.00 4.00
3414 5701 3.383825 ACGGGGTAATAAGCTGAGTACTG 59.616 47.826 8.55 2.41 0.00 2.74
3415 5702 3.639952 ACGGGGTAATAAGCTGAGTACT 58.360 45.455 8.55 0.00 0.00 2.73
3416 5703 4.397481 AACGGGGTAATAAGCTGAGTAC 57.603 45.455 0.00 0.00 0.00 2.73
3417 5704 6.736110 ATAAACGGGGTAATAAGCTGAGTA 57.264 37.500 0.00 0.00 0.00 2.59
3418 5705 3.994931 AAACGGGGTAATAAGCTGAGT 57.005 42.857 0.00 0.00 0.00 3.41
3419 5706 7.660208 ACATTATAAACGGGGTAATAAGCTGAG 59.340 37.037 0.00 0.00 0.00 3.35
3420 5707 7.511268 ACATTATAAACGGGGTAATAAGCTGA 58.489 34.615 0.00 0.00 0.00 4.26
3421 5708 7.660208 AGACATTATAAACGGGGTAATAAGCTG 59.340 37.037 0.00 0.00 0.00 4.24
3422 5709 7.660208 CAGACATTATAAACGGGGTAATAAGCT 59.340 37.037 0.00 0.00 0.00 3.74
3423 5710 7.443272 ACAGACATTATAAACGGGGTAATAAGC 59.557 37.037 0.00 0.00 0.00 3.09
3424 5711 8.897872 ACAGACATTATAAACGGGGTAATAAG 57.102 34.615 0.00 0.00 0.00 1.73
3425 5712 9.762933 GTACAGACATTATAAACGGGGTAATAA 57.237 33.333 0.00 0.00 0.00 1.40
3426 5713 9.146586 AGTACAGACATTATAAACGGGGTAATA 57.853 33.333 0.00 0.00 0.00 0.98
3427 5714 8.026396 AGTACAGACATTATAAACGGGGTAAT 57.974 34.615 0.00 0.00 0.00 1.89
3428 5715 7.422465 AGTACAGACATTATAAACGGGGTAA 57.578 36.000 0.00 0.00 0.00 2.85
3429 5716 8.579006 CATAGTACAGACATTATAAACGGGGTA 58.421 37.037 0.00 0.00 0.00 3.69
3430 5717 5.945144 AGTACAGACATTATAAACGGGGT 57.055 39.130 0.00 0.00 0.00 4.95
3431 5718 6.872020 CCATAGTACAGACATTATAAACGGGG 59.128 42.308 0.00 0.00 0.00 5.73
3432 5719 7.663827 TCCATAGTACAGACATTATAAACGGG 58.336 38.462 0.00 0.00 0.00 5.28
3433 5720 8.975439 GTTCCATAGTACAGACATTATAAACGG 58.025 37.037 0.00 0.00 0.00 4.44
3434 5721 9.745880 AGTTCCATAGTACAGACATTATAAACG 57.254 33.333 0.00 0.00 0.00 3.60
3437 5724 9.542462 GCAAGTTCCATAGTACAGACATTATAA 57.458 33.333 0.00 0.00 0.00 0.98
3438 5725 8.700973 TGCAAGTTCCATAGTACAGACATTATA 58.299 33.333 0.00 0.00 0.00 0.98
3439 5726 7.564793 TGCAAGTTCCATAGTACAGACATTAT 58.435 34.615 0.00 0.00 0.00 1.28
3440 5727 6.941857 TGCAAGTTCCATAGTACAGACATTA 58.058 36.000 0.00 0.00 0.00 1.90
3441 5728 5.804639 TGCAAGTTCCATAGTACAGACATT 58.195 37.500 0.00 0.00 0.00 2.71
3442 5729 5.420725 TGCAAGTTCCATAGTACAGACAT 57.579 39.130 0.00 0.00 0.00 3.06
3443 5730 4.882842 TGCAAGTTCCATAGTACAGACA 57.117 40.909 0.00 0.00 0.00 3.41
3444 5731 4.392138 GGTTGCAAGTTCCATAGTACAGAC 59.608 45.833 0.00 0.00 0.00 3.51
3445 5732 4.286032 AGGTTGCAAGTTCCATAGTACAGA 59.714 41.667 0.00 0.00 0.00 3.41
3446 5733 4.579869 AGGTTGCAAGTTCCATAGTACAG 58.420 43.478 0.00 0.00 0.00 2.74
3447 5734 4.634012 AGGTTGCAAGTTCCATAGTACA 57.366 40.909 0.00 0.00 0.00 2.90
3448 5735 5.001232 TCAAGGTTGCAAGTTCCATAGTAC 58.999 41.667 0.00 0.00 0.00 2.73
3449 5736 5.235850 TCAAGGTTGCAAGTTCCATAGTA 57.764 39.130 0.00 0.00 0.00 1.82
3450 5737 4.098914 TCAAGGTTGCAAGTTCCATAGT 57.901 40.909 0.00 0.00 0.00 2.12
3451 5738 4.701651 TGATCAAGGTTGCAAGTTCCATAG 59.298 41.667 0.00 0.00 0.00 2.23
3452 5739 4.458989 GTGATCAAGGTTGCAAGTTCCATA 59.541 41.667 0.00 0.00 0.00 2.74
3453 5740 3.256631 GTGATCAAGGTTGCAAGTTCCAT 59.743 43.478 0.00 0.00 0.00 3.41
3454 5741 2.622942 GTGATCAAGGTTGCAAGTTCCA 59.377 45.455 0.00 0.00 0.00 3.53
3455 5742 2.622942 TGTGATCAAGGTTGCAAGTTCC 59.377 45.455 0.00 0.00 0.00 3.62
3456 5743 3.632189 GTGTGATCAAGGTTGCAAGTTC 58.368 45.455 0.00 0.00 0.00 3.01
3457 5744 2.033299 CGTGTGATCAAGGTTGCAAGTT 59.967 45.455 0.00 0.00 0.00 2.66
3458 5745 1.603802 CGTGTGATCAAGGTTGCAAGT 59.396 47.619 0.00 0.00 0.00 3.16
3459 5746 1.872952 TCGTGTGATCAAGGTTGCAAG 59.127 47.619 0.00 0.00 0.00 4.01
3460 5747 1.601903 GTCGTGTGATCAAGGTTGCAA 59.398 47.619 0.00 0.00 0.00 4.08
3461 5748 1.225855 GTCGTGTGATCAAGGTTGCA 58.774 50.000 0.00 0.00 0.00 4.08
3462 5749 0.517316 GGTCGTGTGATCAAGGTTGC 59.483 55.000 0.00 0.00 0.00 4.17
3463 5750 1.156736 GGGTCGTGTGATCAAGGTTG 58.843 55.000 0.00 0.00 0.00 3.77
3464 5751 0.036306 GGGGTCGTGTGATCAAGGTT 59.964 55.000 0.00 0.00 0.00 3.50
3465 5752 1.677552 GGGGTCGTGTGATCAAGGT 59.322 57.895 0.00 0.00 0.00 3.50
3466 5753 1.078426 GGGGGTCGTGTGATCAAGG 60.078 63.158 0.00 0.00 0.00 3.61
3467 5754 4.617875 GGGGGTCGTGTGATCAAG 57.382 61.111 0.00 0.00 0.00 3.02
3481 5768 0.105862 TCTGGGTCGTAGTATGGGGG 60.106 60.000 0.00 0.00 0.00 5.40
3482 5769 1.133575 TCTCTGGGTCGTAGTATGGGG 60.134 57.143 0.00 0.00 0.00 4.96
3483 5770 1.955080 GTCTCTGGGTCGTAGTATGGG 59.045 57.143 0.00 0.00 0.00 4.00
3484 5771 2.651455 TGTCTCTGGGTCGTAGTATGG 58.349 52.381 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.