Multiple sequence alignment - TraesCS5B01G373800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G373800 chr5B 100.000 3772 0 0 3225 6996 551418292 551422063 0.000000e+00 6966.0
1 TraesCS5B01G373800 chr5B 100.000 3074 0 0 1 3074 551415068 551418141 0.000000e+00 5677.0
2 TraesCS5B01G373800 chr5B 93.651 189 11 1 3225 3413 551417944 551418131 1.490000e-71 281.0
3 TraesCS5B01G373800 chr4B 99.234 3657 27 1 3271 6926 347577417 347573761 0.000000e+00 6597.0
4 TraesCS5B01G373800 chr4B 98.287 1868 12 8 1209 3058 347579538 347577673 0.000000e+00 3254.0
5 TraesCS5B01G373800 chr4B 94.536 183 9 1 3225 3407 347577854 347577673 1.490000e-71 281.0
6 TraesCS5B01G373800 chr7A 98.917 3692 39 1 3225 6916 59813827 59810137 0.000000e+00 6595.0
7 TraesCS5B01G373800 chr7A 98.150 1838 26 3 1211 3042 59815965 59814130 0.000000e+00 3199.0
8 TraesCS5B01G373800 chr7A 80.000 495 55 19 1209 1683 608490950 608491420 6.770000e-85 326.0
9 TraesCS5B01G373800 chr7A 86.667 105 13 1 2971 3074 59814480 59814376 1.590000e-21 115.0
10 TraesCS5B01G373800 chr6A 98.432 3698 30 3 3225 6922 573127312 573123643 0.000000e+00 6482.0
11 TraesCS5B01G373800 chr6A 97.076 2462 56 8 3225 5674 27201698 27204155 0.000000e+00 4133.0
12 TraesCS5B01G373800 chr6A 97.452 1884 20 3 1209 3074 573129174 573127301 0.000000e+00 3188.0
13 TraesCS5B01G373800 chr6A 95.732 1734 49 9 1270 2985 27199106 27200832 0.000000e+00 2769.0
14 TraesCS5B01G373800 chr6A 96.901 1065 29 3 5670 6730 27212862 27213926 0.000000e+00 1781.0
15 TraesCS5B01G373800 chr6A 96.324 408 14 1 2667 3074 27201488 27201894 0.000000e+00 669.0
16 TraesCS5B01G373800 chr6A 90.418 407 29 9 2672 3074 27201587 27201987 1.730000e-145 527.0
17 TraesCS5B01G373800 chr6A 91.689 373 27 4 2695 3064 573127495 573127124 1.350000e-141 514.0
18 TraesCS5B01G373800 chr6A 91.693 313 23 3 2692 3003 27201698 27202008 1.390000e-116 431.0
19 TraesCS5B01G373800 chr6A 90.823 316 17 6 3225 3528 573127498 573127183 5.050000e-111 412.0
20 TraesCS5B01G373800 chr6A 90.876 274 13 6 3266 3528 27201554 27201826 2.400000e-94 357.0
21 TraesCS5B01G373800 chr6A 88.722 266 26 4 3266 3528 573127633 573127369 8.750000e-84 322.0
22 TraesCS5B01G373800 chr6A 94.146 205 11 1 6724 6928 27244426 27244629 1.890000e-80 311.0
23 TraesCS5B01G373800 chr6A 92.727 55 4 0 2437 2491 39135001 39135055 5.820000e-11 80.5
24 TraesCS5B01G373800 chr1B 97.882 3494 54 6 3254 6730 3176537 3173047 0.000000e+00 6024.0
25 TraesCS5B01G373800 chr1B 96.714 1887 35 9 1202 3070 3178670 3176793 0.000000e+00 3116.0
26 TraesCS5B01G373800 chr1B 84.221 488 48 18 370 842 623884007 623884480 1.380000e-121 448.0
27 TraesCS5B01G373800 chr1B 95.714 210 7 2 6724 6931 3165679 3165470 3.130000e-88 337.0
28 TraesCS5B01G373800 chr1B 87.560 209 12 4 3348 3544 3176536 3176330 5.460000e-56 230.0
29 TraesCS5B01G373800 chr1B 86.316 95 13 0 275 369 623883886 623883980 3.450000e-18 104.0
30 TraesCS5B01G373800 chr2B 91.614 2516 170 23 4193 6704 637753912 637751434 0.000000e+00 3439.0
31 TraesCS5B01G373800 chr2B 89.952 2478 194 25 4265 6730 733836575 733834141 0.000000e+00 3145.0
32 TraesCS5B01G373800 chr2B 91.595 464 27 7 3533 3994 637754379 637753926 1.280000e-176 630.0
33 TraesCS5B01G373800 chr2B 89.462 465 42 6 3533 3994 733837543 733837083 1.310000e-161 580.0
34 TraesCS5B01G373800 chr2B 84.121 529 54 18 370 883 152651551 152651038 1.060000e-132 484.0
35 TraesCS5B01G373800 chr2B 86.215 428 40 10 1296 1711 637755866 637755446 4.980000e-121 446.0
36 TraesCS5B01G373800 chr2B 87.601 371 36 8 1210 1576 733841256 733840892 8.390000e-114 422.0
37 TraesCS5B01G373800 chr2B 82.863 461 46 18 1857 2313 637755333 637754902 3.960000e-102 383.0
38 TraesCS5B01G373800 chr2B 82.787 122 9 6 2954 3074 637754548 637754438 1.610000e-16 99.0
39 TraesCS5B01G373800 chr2B 94.444 54 3 0 2437 2490 637754835 637754782 4.500000e-12 84.2
40 TraesCS5B01G373800 chr2B 100.000 30 0 0 1877 1906 637755414 637755385 1.000000e-03 56.5
41 TraesCS5B01G373800 chr5A 93.436 1889 78 17 1209 3074 20133598 20131733 0.000000e+00 2760.0
42 TraesCS5B01G373800 chr5A 97.455 1218 26 4 3631 4846 20131549 20130335 0.000000e+00 2073.0
43 TraesCS5B01G373800 chr5A 88.806 402 35 9 3228 3627 20132003 20131610 1.060000e-132 484.0
44 TraesCS5B01G373800 chr5A 100.000 28 0 0 1174 1201 326041153 326041180 1.300000e-02 52.8
45 TraesCS5B01G373800 chr4D 79.588 2430 382 82 4352 6730 422229596 422227230 0.000000e+00 1635.0
46 TraesCS5B01G373800 chr7D 79.140 2464 397 76 4334 6730 587277763 587280176 0.000000e+00 1594.0
47 TraesCS5B01G373800 chr7D 79.565 690 67 38 1211 1857 604358997 604358339 6.490000e-115 425.0
48 TraesCS5B01G373800 chr1D 78.809 2468 401 75 4334 6730 431412735 431415151 0.000000e+00 1548.0
49 TraesCS5B01G373800 chr1D 78.415 366 51 16 865 1210 418529841 418530198 5.500000e-51 213.0
50 TraesCS5B01G373800 chr7B 77.548 2463 420 99 4335 6730 328558841 328561237 0.000000e+00 1362.0
51 TraesCS5B01G373800 chr2A 93.884 883 27 6 370 1233 748695767 748694893 0.000000e+00 1306.0
52 TraesCS5B01G373800 chr2A 81.272 283 31 13 1417 1683 72711157 72711433 7.110000e-50 209.0
53 TraesCS5B01G373800 chr2A 91.753 97 8 0 273 369 748695890 748695794 1.220000e-27 135.0
54 TraesCS5B01G373800 chr2A 100.000 66 0 0 6931 6996 748694919 748694854 9.530000e-24 122.0
55 TraesCS5B01G373800 chr4A 87.437 398 37 11 1209 1595 624740319 624740714 4.980000e-121 446.0
56 TraesCS5B01G373800 chr4A 79.630 594 94 20 3531 4116 590317144 590316570 1.090000e-107 401.0
57 TraesCS5B01G373800 chr6D 81.707 574 50 28 1215 1755 55900033 55899482 1.800000e-115 427.0
58 TraesCS5B01G373800 chr3A 89.062 64 5 2 6931 6993 7508787 7508849 2.090000e-10 78.7
59 TraesCS5B01G373800 chr3A 100.000 28 0 0 1174 1201 736478467 736478494 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G373800 chr5B 551415068 551422063 6995 False 4308.000000 6966 97.883667 1 6996 3 chr5B.!!$F1 6995
1 TraesCS5B01G373800 chr4B 347573761 347579538 5777 True 3377.333333 6597 97.352333 1209 6926 3 chr4B.!!$R1 5717
2 TraesCS5B01G373800 chr7A 59810137 59815965 5828 True 3303.000000 6595 94.578000 1211 6916 3 chr7A.!!$R1 5705
3 TraesCS5B01G373800 chr6A 573123643 573129174 5531 True 2183.600000 6482 93.423600 1209 6922 5 chr6A.!!$R1 5713
4 TraesCS5B01G373800 chr6A 27212862 27213926 1064 False 1781.000000 1781 96.901000 5670 6730 1 chr6A.!!$F1 1060
5 TraesCS5B01G373800 chr6A 27199106 27204155 5049 False 1481.000000 4133 93.686500 1270 5674 6 chr6A.!!$F4 4404
6 TraesCS5B01G373800 chr1B 3173047 3178670 5623 True 3123.333333 6024 94.052000 1202 6730 3 chr1B.!!$R2 5528
7 TraesCS5B01G373800 chr1B 623883886 623884480 594 False 276.000000 448 85.268500 275 842 2 chr1B.!!$F1 567
8 TraesCS5B01G373800 chr2B 733834141 733841256 7115 True 1382.333333 3145 89.005000 1210 6730 3 chr2B.!!$R3 5520
9 TraesCS5B01G373800 chr2B 637751434 637755866 4432 True 733.957143 3439 89.931143 1296 6704 7 chr2B.!!$R2 5408
10 TraesCS5B01G373800 chr2B 152651038 152651551 513 True 484.000000 484 84.121000 370 883 1 chr2B.!!$R1 513
11 TraesCS5B01G373800 chr5A 20130335 20133598 3263 True 1772.333333 2760 93.232333 1209 4846 3 chr5A.!!$R1 3637
12 TraesCS5B01G373800 chr4D 422227230 422229596 2366 True 1635.000000 1635 79.588000 4352 6730 1 chr4D.!!$R1 2378
13 TraesCS5B01G373800 chr7D 587277763 587280176 2413 False 1594.000000 1594 79.140000 4334 6730 1 chr7D.!!$F1 2396
14 TraesCS5B01G373800 chr7D 604358339 604358997 658 True 425.000000 425 79.565000 1211 1857 1 chr7D.!!$R1 646
15 TraesCS5B01G373800 chr1D 431412735 431415151 2416 False 1548.000000 1548 78.809000 4334 6730 1 chr1D.!!$F2 2396
16 TraesCS5B01G373800 chr7B 328558841 328561237 2396 False 1362.000000 1362 77.548000 4335 6730 1 chr7B.!!$F1 2395
17 TraesCS5B01G373800 chr2A 748694854 748695890 1036 True 521.000000 1306 95.212333 273 6996 3 chr2A.!!$R1 6723
18 TraesCS5B01G373800 chr4A 590316570 590317144 574 True 401.000000 401 79.630000 3531 4116 1 chr4A.!!$R1 585
19 TraesCS5B01G373800 chr6D 55899482 55900033 551 True 427.000000 427 81.707000 1215 1755 1 chr6D.!!$R1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.032267 GGCACCCGTAGAGCAGTATC 59.968 60.000 0.00 0.00 0.00 2.24 F
904 931 0.037232 AGCAGGAGAAGTACGTTGCC 60.037 55.000 0.00 0.00 0.00 4.52 F
1147 1174 0.387202 CATTTGTTGGTTCCACGCCA 59.613 50.000 0.00 0.00 0.00 5.69 F
1148 1175 0.387565 ATTTGTTGGTTCCACGCCAC 59.612 50.000 0.00 0.00 35.46 5.01 F
1662 2250 0.976641 TCAGTTCATGTCGCCCTCTT 59.023 50.000 0.00 0.00 0.00 2.85 F
1814 2418 3.106827 TGTTCATGTAGATGAGAGGGCA 58.893 45.455 2.46 0.00 39.81 5.36 F
3563 7612 4.290196 ACAGGTTTAAATGGGTAGGCTACA 59.710 41.667 24.96 7.14 0.00 2.74 F
4349 8900 7.122055 TGTGTCTCTCCTTTTGTTGTTTTGTAT 59.878 33.333 0.00 0.00 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1117 1144 0.249826 CAACAAATGTGTGGCCCACC 60.250 55.000 12.25 3.29 43.85 4.61 R
1814 2418 4.202161 CGCCTACAGGAACATCTACAGATT 60.202 45.833 0.00 0.00 37.39 2.40 R
2837 6244 7.023171 ACACTGGAATTAAATGGGTACACTA 57.977 36.000 0.00 0.00 0.00 2.74 R
3321 7327 8.440059 CGCTGAAACTACAATCAAATTACACTA 58.560 33.333 0.00 0.00 0.00 2.74 R
3563 7612 5.486526 GAACATCCTGATGAGACACTTTCT 58.513 41.667 13.81 0.00 41.20 2.52 R
4101 8226 5.183904 GGAGGACAGAAAACATTACATGCTT 59.816 40.000 0.00 0.00 0.00 3.91 R
4542 9093 5.298777 GGAATTCAGATGAAGGGACATCAAG 59.701 44.000 7.93 0.00 46.11 3.02 R
5999 10685 0.948678 CCCCAACACTAACAACACCG 59.051 55.000 0.00 0.00 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.298009 GGACGAGACACGAGAGGA 57.702 61.111 0.00 0.00 45.77 3.71
18 19 2.783228 GGACGAGACACGAGAGGAT 58.217 57.895 0.00 0.00 45.77 3.24
19 20 0.378962 GGACGAGACACGAGAGGATG 59.621 60.000 0.00 0.00 45.77 3.51
20 21 1.370609 GACGAGACACGAGAGGATGA 58.629 55.000 0.00 0.00 45.77 2.92
21 22 1.329292 GACGAGACACGAGAGGATGAG 59.671 57.143 0.00 0.00 45.77 2.90
22 23 0.660488 CGAGACACGAGAGGATGAGG 59.340 60.000 0.00 0.00 45.77 3.86
23 24 1.744114 CGAGACACGAGAGGATGAGGA 60.744 57.143 0.00 0.00 45.77 3.71
24 25 1.946768 GAGACACGAGAGGATGAGGAG 59.053 57.143 0.00 0.00 0.00 3.69
25 26 1.028905 GACACGAGAGGATGAGGAGG 58.971 60.000 0.00 0.00 0.00 4.30
26 27 0.626382 ACACGAGAGGATGAGGAGGA 59.374 55.000 0.00 0.00 0.00 3.71
27 28 1.317613 CACGAGAGGATGAGGAGGAG 58.682 60.000 0.00 0.00 0.00 3.69
28 29 0.184933 ACGAGAGGATGAGGAGGAGG 59.815 60.000 0.00 0.00 0.00 4.30
29 30 0.476338 CGAGAGGATGAGGAGGAGGA 59.524 60.000 0.00 0.00 0.00 3.71
30 31 1.817740 CGAGAGGATGAGGAGGAGGAC 60.818 61.905 0.00 0.00 0.00 3.85
31 32 1.216678 GAGAGGATGAGGAGGAGGACA 59.783 57.143 0.00 0.00 0.00 4.02
32 33 1.217689 AGAGGATGAGGAGGAGGACAG 59.782 57.143 0.00 0.00 0.00 3.51
33 34 1.216678 GAGGATGAGGAGGAGGACAGA 59.783 57.143 0.00 0.00 0.00 3.41
34 35 1.217689 AGGATGAGGAGGAGGACAGAG 59.782 57.143 0.00 0.00 0.00 3.35
35 36 1.039856 GATGAGGAGGAGGACAGAGC 58.960 60.000 0.00 0.00 0.00 4.09
36 37 0.754957 ATGAGGAGGAGGACAGAGCG 60.755 60.000 0.00 0.00 0.00 5.03
37 38 2.043450 AGGAGGAGGACAGAGCGG 60.043 66.667 0.00 0.00 0.00 5.52
38 39 2.043852 GGAGGAGGACAGAGCGGA 60.044 66.667 0.00 0.00 0.00 5.54
39 40 2.419739 GGAGGAGGACAGAGCGGAC 61.420 68.421 0.00 0.00 0.00 4.79
40 41 2.363147 AGGAGGACAGAGCGGACC 60.363 66.667 0.00 0.00 0.00 4.46
41 42 2.363147 GGAGGACAGAGCGGACCT 60.363 66.667 0.00 0.00 35.29 3.85
42 43 2.716017 GGAGGACAGAGCGGACCTG 61.716 68.421 0.00 0.00 37.64 4.00
43 44 2.681778 AGGACAGAGCGGACCTGG 60.682 66.667 0.00 0.00 36.03 4.45
44 45 2.997897 GGACAGAGCGGACCTGGT 60.998 66.667 0.00 0.00 36.03 4.00
45 46 1.681327 GGACAGAGCGGACCTGGTA 60.681 63.158 0.00 0.00 36.03 3.25
46 47 1.043673 GGACAGAGCGGACCTGGTAT 61.044 60.000 0.00 0.00 36.03 2.73
47 48 0.103208 GACAGAGCGGACCTGGTATG 59.897 60.000 0.00 8.07 36.03 2.39
48 49 1.330655 ACAGAGCGGACCTGGTATGG 61.331 60.000 0.00 0.00 36.03 2.74
49 50 1.043116 CAGAGCGGACCTGGTATGGA 61.043 60.000 0.00 0.00 0.00 3.41
50 51 0.757188 AGAGCGGACCTGGTATGGAG 60.757 60.000 0.00 0.00 0.00 3.86
51 52 1.001760 AGCGGACCTGGTATGGAGT 59.998 57.895 0.00 0.00 0.00 3.85
52 53 1.043673 AGCGGACCTGGTATGGAGTC 61.044 60.000 0.00 0.00 0.00 3.36
53 54 1.043673 GCGGACCTGGTATGGAGTCT 61.044 60.000 0.00 0.00 0.00 3.24
54 55 1.486211 CGGACCTGGTATGGAGTCTT 58.514 55.000 0.00 0.00 0.00 3.01
55 56 2.662866 CGGACCTGGTATGGAGTCTTA 58.337 52.381 0.00 0.00 0.00 2.10
56 57 2.623889 CGGACCTGGTATGGAGTCTTAG 59.376 54.545 0.00 0.00 0.00 2.18
57 58 3.687551 CGGACCTGGTATGGAGTCTTAGA 60.688 52.174 0.00 0.00 0.00 2.10
58 59 4.287552 GGACCTGGTATGGAGTCTTAGAA 58.712 47.826 0.00 0.00 0.00 2.10
59 60 4.342665 GGACCTGGTATGGAGTCTTAGAAG 59.657 50.000 0.00 0.00 0.00 2.85
60 61 4.290942 ACCTGGTATGGAGTCTTAGAAGG 58.709 47.826 0.00 0.00 0.00 3.46
61 62 3.070302 CCTGGTATGGAGTCTTAGAAGGC 59.930 52.174 0.00 0.00 0.00 4.35
62 63 2.693591 TGGTATGGAGTCTTAGAAGGCG 59.306 50.000 0.00 0.00 35.32 5.52
63 64 2.036089 GGTATGGAGTCTTAGAAGGCGG 59.964 54.545 0.00 0.00 35.32 6.13
64 65 1.123928 ATGGAGTCTTAGAAGGCGGG 58.876 55.000 0.00 0.00 35.32 6.13
65 66 0.976073 TGGAGTCTTAGAAGGCGGGG 60.976 60.000 0.00 0.00 35.32 5.73
66 67 1.687297 GGAGTCTTAGAAGGCGGGGG 61.687 65.000 0.00 0.00 35.32 5.40
67 68 0.976590 GAGTCTTAGAAGGCGGGGGT 60.977 60.000 0.00 0.00 35.32 4.95
68 69 1.221021 GTCTTAGAAGGCGGGGGTG 59.779 63.158 0.00 0.00 0.00 4.61
69 70 1.993391 TCTTAGAAGGCGGGGGTGG 60.993 63.158 0.00 0.00 0.00 4.61
70 71 3.699134 CTTAGAAGGCGGGGGTGGC 62.699 68.421 0.00 0.00 0.00 5.01
97 98 3.760035 CGGCACCCGTAGAGCAGT 61.760 66.667 0.00 0.00 42.73 4.40
98 99 2.412323 CGGCACCCGTAGAGCAGTA 61.412 63.158 0.00 0.00 42.73 2.74
99 100 1.735376 CGGCACCCGTAGAGCAGTAT 61.735 60.000 0.00 0.00 42.73 2.12
100 101 0.032267 GGCACCCGTAGAGCAGTATC 59.968 60.000 0.00 0.00 0.00 2.24
101 102 0.317938 GCACCCGTAGAGCAGTATCG 60.318 60.000 0.00 0.00 0.00 2.92
102 103 1.306148 CACCCGTAGAGCAGTATCGA 58.694 55.000 0.00 0.00 0.00 3.59
103 104 1.880675 CACCCGTAGAGCAGTATCGAT 59.119 52.381 2.16 2.16 0.00 3.59
104 105 3.072211 CACCCGTAGAGCAGTATCGATA 58.928 50.000 0.00 0.00 0.00 2.92
105 106 3.690139 CACCCGTAGAGCAGTATCGATAT 59.310 47.826 8.66 0.00 0.00 1.63
106 107 3.940221 ACCCGTAGAGCAGTATCGATATC 59.060 47.826 8.66 1.99 0.00 1.63
107 108 3.001431 CCCGTAGAGCAGTATCGATATCG 59.999 52.174 19.14 19.14 41.45 2.92
108 109 3.544440 CCGTAGAGCAGTATCGATATCGC 60.544 52.174 20.34 16.95 39.60 4.58
109 110 3.544440 CGTAGAGCAGTATCGATATCGCC 60.544 52.174 20.34 10.24 39.60 5.54
110 111 1.746220 AGAGCAGTATCGATATCGCCC 59.254 52.381 20.34 11.99 39.60 6.13
111 112 1.472878 GAGCAGTATCGATATCGCCCA 59.527 52.381 20.34 3.72 39.60 5.36
112 113 1.474478 AGCAGTATCGATATCGCCCAG 59.526 52.381 20.34 9.63 39.60 4.45
113 114 1.202582 GCAGTATCGATATCGCCCAGT 59.797 52.381 20.34 7.48 39.60 4.00
114 115 2.732597 GCAGTATCGATATCGCCCAGTC 60.733 54.545 20.34 7.22 39.60 3.51
115 116 1.738350 AGTATCGATATCGCCCAGTCG 59.262 52.381 20.34 0.00 39.60 4.18
116 117 1.467734 GTATCGATATCGCCCAGTCGT 59.532 52.381 20.34 1.70 39.60 4.34
117 118 0.522180 ATCGATATCGCCCAGTCGTC 59.478 55.000 20.34 0.00 39.60 4.20
118 119 1.440518 CGATATCGCCCAGTCGTCG 60.441 63.158 12.95 0.00 0.00 5.12
119 120 1.729838 GATATCGCCCAGTCGTCGC 60.730 63.158 0.00 0.00 0.00 5.19
120 121 2.131294 GATATCGCCCAGTCGTCGCT 62.131 60.000 0.00 0.00 0.00 4.93
121 122 2.407846 ATATCGCCCAGTCGTCGCTG 62.408 60.000 8.99 8.99 36.31 5.18
127 128 3.114616 CAGTCGTCGCTGGCCAAG 61.115 66.667 7.01 3.85 33.11 3.61
128 129 3.303135 AGTCGTCGCTGGCCAAGA 61.303 61.111 7.01 6.70 0.00 3.02
129 130 2.811317 GTCGTCGCTGGCCAAGAG 60.811 66.667 7.01 3.04 0.00 2.85
130 131 2.989253 TCGTCGCTGGCCAAGAGA 60.989 61.111 7.01 5.68 31.52 3.10
131 132 2.048222 CGTCGCTGGCCAAGAGAA 60.048 61.111 7.01 0.00 36.38 2.87
132 133 2.097038 CGTCGCTGGCCAAGAGAAG 61.097 63.158 7.01 7.15 36.38 2.85
133 134 1.743252 GTCGCTGGCCAAGAGAAGG 60.743 63.158 7.01 0.00 36.38 3.46
134 135 2.437359 CGCTGGCCAAGAGAAGGG 60.437 66.667 7.01 0.00 0.00 3.95
135 136 2.959484 CGCTGGCCAAGAGAAGGGA 61.959 63.158 7.01 0.00 0.00 4.20
136 137 1.377856 GCTGGCCAAGAGAAGGGAC 60.378 63.158 7.01 0.00 0.00 4.46
137 138 1.078848 CTGGCCAAGAGAAGGGACG 60.079 63.158 7.01 0.00 33.70 4.79
138 139 1.535444 TGGCCAAGAGAAGGGACGA 60.535 57.895 0.61 0.00 33.70 4.20
139 140 1.219393 GGCCAAGAGAAGGGACGAG 59.781 63.158 0.00 0.00 0.00 4.18
140 141 1.258445 GGCCAAGAGAAGGGACGAGA 61.258 60.000 0.00 0.00 0.00 4.04
141 142 0.174617 GCCAAGAGAAGGGACGAGAG 59.825 60.000 0.00 0.00 0.00 3.20
142 143 1.840737 CCAAGAGAAGGGACGAGAGA 58.159 55.000 0.00 0.00 0.00 3.10
143 144 1.748493 CCAAGAGAAGGGACGAGAGAG 59.252 57.143 0.00 0.00 0.00 3.20
144 145 2.619332 CCAAGAGAAGGGACGAGAGAGA 60.619 54.545 0.00 0.00 0.00 3.10
145 146 2.682856 CAAGAGAAGGGACGAGAGAGAG 59.317 54.545 0.00 0.00 0.00 3.20
146 147 2.193127 AGAGAAGGGACGAGAGAGAGA 58.807 52.381 0.00 0.00 0.00 3.10
147 148 2.170607 AGAGAAGGGACGAGAGAGAGAG 59.829 54.545 0.00 0.00 0.00 3.20
148 149 1.211949 AGAAGGGACGAGAGAGAGAGG 59.788 57.143 0.00 0.00 0.00 3.69
149 150 0.257616 AAGGGACGAGAGAGAGAGGG 59.742 60.000 0.00 0.00 0.00 4.30
150 151 0.917333 AGGGACGAGAGAGAGAGGGT 60.917 60.000 0.00 0.00 0.00 4.34
151 152 0.750182 GGGACGAGAGAGAGAGGGTG 60.750 65.000 0.00 0.00 0.00 4.61
152 153 0.253610 GGACGAGAGAGAGAGGGTGA 59.746 60.000 0.00 0.00 0.00 4.02
153 154 1.663695 GACGAGAGAGAGAGGGTGAG 58.336 60.000 0.00 0.00 0.00 3.51
154 155 0.254747 ACGAGAGAGAGAGGGTGAGG 59.745 60.000 0.00 0.00 0.00 3.86
155 156 0.465460 CGAGAGAGAGAGGGTGAGGG 60.465 65.000 0.00 0.00 0.00 4.30
156 157 0.923358 GAGAGAGAGAGGGTGAGGGA 59.077 60.000 0.00 0.00 0.00 4.20
157 158 1.286553 GAGAGAGAGAGGGTGAGGGAA 59.713 57.143 0.00 0.00 0.00 3.97
158 159 1.287739 AGAGAGAGAGGGTGAGGGAAG 59.712 57.143 0.00 0.00 0.00 3.46
159 160 0.338120 AGAGAGAGGGTGAGGGAAGG 59.662 60.000 0.00 0.00 0.00 3.46
160 161 0.336737 GAGAGAGGGTGAGGGAAGGA 59.663 60.000 0.00 0.00 0.00 3.36
161 162 0.338120 AGAGAGGGTGAGGGAAGGAG 59.662 60.000 0.00 0.00 0.00 3.69
162 163 0.689412 GAGAGGGTGAGGGAAGGAGG 60.689 65.000 0.00 0.00 0.00 4.30
163 164 2.285743 AGGGTGAGGGAAGGAGGC 60.286 66.667 0.00 0.00 0.00 4.70
164 165 3.412408 GGGTGAGGGAAGGAGGCC 61.412 72.222 0.00 0.00 0.00 5.19
165 166 3.412408 GGTGAGGGAAGGAGGCCC 61.412 72.222 0.00 0.00 46.40 5.80
170 171 3.342477 GGGAAGGAGGCCCAAGCT 61.342 66.667 0.00 0.00 45.31 3.74
171 172 2.273776 GGAAGGAGGCCCAAGCTC 59.726 66.667 0.00 0.00 39.73 4.09
172 173 2.304831 GGAAGGAGGCCCAAGCTCT 61.305 63.158 0.00 0.00 39.73 4.09
173 174 1.688211 GAAGGAGGCCCAAGCTCTT 59.312 57.895 0.00 0.00 39.73 2.85
174 175 0.393673 GAAGGAGGCCCAAGCTCTTC 60.394 60.000 0.00 0.32 39.73 2.87
175 176 0.844221 AAGGAGGCCCAAGCTCTTCT 60.844 55.000 0.00 0.00 39.73 2.85
176 177 0.844221 AGGAGGCCCAAGCTCTTCTT 60.844 55.000 0.00 0.00 39.73 2.52
177 178 0.393673 GGAGGCCCAAGCTCTTCTTC 60.394 60.000 0.00 0.00 39.73 2.87
178 179 0.617935 GAGGCCCAAGCTCTTCTTCT 59.382 55.000 0.00 0.00 39.73 2.85
179 180 0.617935 AGGCCCAAGCTCTTCTTCTC 59.382 55.000 0.00 0.00 39.73 2.87
180 181 0.326264 GGCCCAAGCTCTTCTTCTCA 59.674 55.000 0.00 0.00 39.73 3.27
181 182 1.271597 GGCCCAAGCTCTTCTTCTCAA 60.272 52.381 0.00 0.00 39.73 3.02
182 183 2.508526 GCCCAAGCTCTTCTTCTCAAA 58.491 47.619 0.00 0.00 35.50 2.69
183 184 2.887152 GCCCAAGCTCTTCTTCTCAAAA 59.113 45.455 0.00 0.00 35.50 2.44
184 185 3.057666 GCCCAAGCTCTTCTTCTCAAAAG 60.058 47.826 0.00 0.00 35.50 2.27
185 186 4.392940 CCCAAGCTCTTCTTCTCAAAAGA 58.607 43.478 0.00 0.00 31.27 2.52
186 187 4.823989 CCCAAGCTCTTCTTCTCAAAAGAA 59.176 41.667 0.00 0.77 39.22 2.52
187 188 5.300286 CCCAAGCTCTTCTTCTCAAAAGAAA 59.700 40.000 2.25 0.00 40.95 2.52
188 189 6.183360 CCCAAGCTCTTCTTCTCAAAAGAAAA 60.183 38.462 2.25 0.00 40.95 2.29
189 190 6.916932 CCAAGCTCTTCTTCTCAAAAGAAAAG 59.083 38.462 2.25 0.07 40.95 2.27
190 191 7.201767 CCAAGCTCTTCTTCTCAAAAGAAAAGA 60.202 37.037 5.31 5.68 40.95 2.52
191 192 7.872113 AGCTCTTCTTCTCAAAAGAAAAGAA 57.128 32.000 5.31 0.00 40.95 2.52
192 193 8.286191 AGCTCTTCTTCTCAAAAGAAAAGAAA 57.714 30.769 5.31 0.00 40.95 2.52
193 194 8.743714 AGCTCTTCTTCTCAAAAGAAAAGAAAA 58.256 29.630 5.31 0.00 40.95 2.29
194 195 9.358872 GCTCTTCTTCTCAAAAGAAAAGAAAAA 57.641 29.630 5.31 0.00 40.95 1.94
212 213 4.813296 AAAAAGTACCAAGTTCTCGCTG 57.187 40.909 0.00 0.00 0.00 5.18
213 214 2.457366 AAGTACCAAGTTCTCGCTGG 57.543 50.000 0.00 0.00 0.00 4.85
214 215 1.629043 AGTACCAAGTTCTCGCTGGA 58.371 50.000 0.00 0.00 0.00 3.86
215 216 1.546476 AGTACCAAGTTCTCGCTGGAG 59.454 52.381 0.00 0.00 41.89 3.86
229 230 2.688364 CTGGAGACGGCAAAGTTTTC 57.312 50.000 0.00 0.00 0.00 2.29
230 231 2.222027 CTGGAGACGGCAAAGTTTTCT 58.778 47.619 0.00 0.00 0.00 2.52
231 232 3.399330 CTGGAGACGGCAAAGTTTTCTA 58.601 45.455 0.00 0.00 0.00 2.10
232 233 3.399330 TGGAGACGGCAAAGTTTTCTAG 58.601 45.455 0.00 0.00 0.00 2.43
233 234 2.742589 GGAGACGGCAAAGTTTTCTAGG 59.257 50.000 0.00 0.00 0.00 3.02
234 235 3.400255 GAGACGGCAAAGTTTTCTAGGT 58.600 45.455 0.00 0.00 0.00 3.08
235 236 3.813724 GAGACGGCAAAGTTTTCTAGGTT 59.186 43.478 0.00 0.00 0.00 3.50
236 237 4.204799 AGACGGCAAAGTTTTCTAGGTTT 58.795 39.130 0.00 0.00 0.00 3.27
237 238 4.643334 AGACGGCAAAGTTTTCTAGGTTTT 59.357 37.500 0.00 0.00 0.00 2.43
238 239 4.928601 ACGGCAAAGTTTTCTAGGTTTTC 58.071 39.130 0.00 0.00 0.00 2.29
239 240 3.972502 CGGCAAAGTTTTCTAGGTTTTCG 59.027 43.478 0.00 0.00 0.00 3.46
240 241 4.496840 CGGCAAAGTTTTCTAGGTTTTCGT 60.497 41.667 0.00 0.00 0.00 3.85
241 242 5.277442 CGGCAAAGTTTTCTAGGTTTTCGTA 60.277 40.000 0.00 0.00 0.00 3.43
242 243 6.140786 GGCAAAGTTTTCTAGGTTTTCGTAG 58.859 40.000 0.00 0.00 38.98 3.51
243 244 6.140786 GCAAAGTTTTCTAGGTTTTCGTAGG 58.859 40.000 0.00 0.00 38.40 3.18
244 245 5.936686 AAGTTTTCTAGGTTTTCGTAGGC 57.063 39.130 0.00 0.00 38.40 3.93
245 246 3.992427 AGTTTTCTAGGTTTTCGTAGGCG 59.008 43.478 0.00 0.00 38.40 5.52
246 247 3.940209 TTTCTAGGTTTTCGTAGGCGA 57.060 42.857 0.00 0.00 46.36 5.54
254 255 3.104766 TCGTAGGCGATCGACCAC 58.895 61.111 19.53 14.35 42.81 4.16
255 256 2.352001 CGTAGGCGATCGACCACG 60.352 66.667 26.39 26.39 41.33 4.94
256 257 2.025727 GTAGGCGATCGACCACGG 59.974 66.667 19.53 0.00 40.21 4.94
261 262 3.186047 CGATCGACCACGGCCAAC 61.186 66.667 10.26 0.00 40.21 3.77
262 263 2.047655 GATCGACCACGGCCAACA 60.048 61.111 2.24 0.00 40.21 3.33
263 264 2.047274 ATCGACCACGGCCAACAG 60.047 61.111 2.24 0.00 40.21 3.16
264 265 2.781595 GATCGACCACGGCCAACAGT 62.782 60.000 2.24 0.00 40.21 3.55
265 266 2.391724 ATCGACCACGGCCAACAGTT 62.392 55.000 2.24 0.00 40.21 3.16
266 267 2.184167 CGACCACGGCCAACAGTTT 61.184 57.895 2.24 0.00 35.72 2.66
267 268 1.720694 CGACCACGGCCAACAGTTTT 61.721 55.000 2.24 0.00 35.72 2.43
268 269 0.458260 GACCACGGCCAACAGTTTTT 59.542 50.000 2.24 0.00 0.00 1.94
269 270 0.174617 ACCACGGCCAACAGTTTTTG 59.825 50.000 2.24 0.00 0.00 2.44
319 320 9.319223 CAACTTCTTCGAAAGTTTAGAAATAGC 57.681 33.333 11.62 0.00 44.95 2.97
329 330 6.140968 AGTTTAGAAATAGCCCCTGAACTT 57.859 37.500 0.00 0.00 34.46 2.66
483 510 4.137872 GGCGGTAGTACTGGCGCA 62.138 66.667 18.85 0.00 40.30 6.09
505 532 4.056125 CCTGCCACGTCGAGCTCA 62.056 66.667 15.40 0.00 0.00 4.26
677 704 1.069765 CTCCTGAAGCACCGTGTGT 59.930 57.895 0.00 0.00 35.75 3.72
715 742 0.179065 TCATCTGCTCGCCTGGATTG 60.179 55.000 0.00 0.00 0.00 2.67
732 759 4.084888 GGGAAACCGTTCGCGCTG 62.085 66.667 5.56 0.00 43.64 5.18
733 760 3.343421 GGAAACCGTTCGCGCTGT 61.343 61.111 5.56 0.00 39.70 4.40
734 761 2.127758 GAAACCGTTCGCGCTGTG 60.128 61.111 5.56 0.00 39.70 3.66
735 762 4.307908 AAACCGTTCGCGCTGTGC 62.308 61.111 5.56 2.45 39.70 4.57
739 766 4.126390 CGTTCGCGCTGTGCTGAG 62.126 66.667 11.82 0.00 43.27 3.35
740 767 3.038417 GTTCGCGCTGTGCTGAGT 61.038 61.111 11.82 0.00 43.27 3.41
741 768 3.037833 TTCGCGCTGTGCTGAGTG 61.038 61.111 11.82 0.00 43.27 3.51
744 771 3.418068 GCGCTGTGCTGAGTGGAC 61.418 66.667 5.84 0.00 41.73 4.02
745 772 2.740055 CGCTGTGCTGAGTGGACC 60.740 66.667 0.00 0.00 36.06 4.46
746 773 2.740055 GCTGTGCTGAGTGGACCG 60.740 66.667 0.00 0.00 36.06 4.79
747 774 2.740055 CTGTGCTGAGTGGACCGC 60.740 66.667 0.00 0.00 36.06 5.68
748 775 4.314440 TGTGCTGAGTGGACCGCC 62.314 66.667 0.08 0.00 36.06 6.13
752 779 4.778415 CTGAGTGGACCGCCGTCG 62.778 72.222 0.08 0.00 40.17 5.12
754 781 4.047059 GAGTGGACCGCCGTCGAA 62.047 66.667 0.08 0.00 40.17 3.71
755 782 4.353437 AGTGGACCGCCGTCGAAC 62.353 66.667 0.08 1.13 40.17 3.95
771 798 2.528797 AACGCGATGTTCACTCCAC 58.471 52.632 15.93 0.00 35.27 4.02
772 799 0.949105 AACGCGATGTTCACTCCACC 60.949 55.000 15.93 0.00 35.27 4.61
773 800 2.444624 CGCGATGTTCACTCCACCG 61.445 63.158 0.00 0.00 0.00 4.94
774 801 2.740714 GCGATGTTCACTCCACCGC 61.741 63.158 0.00 0.00 0.00 5.68
775 802 2.100631 CGATGTTCACTCCACCGCC 61.101 63.158 0.00 0.00 0.00 6.13
776 803 1.003839 GATGTTCACTCCACCGCCA 60.004 57.895 0.00 0.00 0.00 5.69
777 804 1.298859 GATGTTCACTCCACCGCCAC 61.299 60.000 0.00 0.00 0.00 5.01
778 805 2.668550 GTTCACTCCACCGCCACC 60.669 66.667 0.00 0.00 0.00 4.61
779 806 2.847234 TTCACTCCACCGCCACCT 60.847 61.111 0.00 0.00 0.00 4.00
780 807 2.879233 TTCACTCCACCGCCACCTC 61.879 63.158 0.00 0.00 0.00 3.85
781 808 4.742201 CACTCCACCGCCACCTCG 62.742 72.222 0.00 0.00 0.00 4.63
802 829 4.643385 GCCGTCGTGCGTGTTGTG 62.643 66.667 0.00 0.00 39.32 3.33
803 830 4.643385 CCGTCGTGCGTGTTGTGC 62.643 66.667 0.00 0.00 39.32 4.57
804 831 4.643385 CGTCGTGCGTGTTGTGCC 62.643 66.667 0.00 0.00 35.54 5.01
805 832 3.568743 GTCGTGCGTGTTGTGCCA 61.569 61.111 0.00 0.00 0.00 4.92
806 833 3.568743 TCGTGCGTGTTGTGCCAC 61.569 61.111 0.00 0.00 0.00 5.01
807 834 4.605967 CGTGCGTGTTGTGCCACC 62.606 66.667 0.00 0.00 31.47 4.61
808 835 3.513438 GTGCGTGTTGTGCCACCA 61.513 61.111 0.00 0.00 31.47 4.17
809 836 3.513438 TGCGTGTTGTGCCACCAC 61.513 61.111 0.00 0.00 42.40 4.16
810 837 4.264638 GCGTGTTGTGCCACCACC 62.265 66.667 0.00 0.00 41.35 4.61
811 838 3.947841 CGTGTTGTGCCACCACCG 61.948 66.667 0.00 0.00 41.35 4.94
812 839 4.264638 GTGTTGTGCCACCACCGC 62.265 66.667 0.00 0.00 41.35 5.68
813 840 4.497984 TGTTGTGCCACCACCGCT 62.498 61.111 0.00 0.00 41.35 5.52
814 841 3.964875 GTTGTGCCACCACCGCTG 61.965 66.667 0.00 0.00 41.35 5.18
844 871 3.645975 CGACACGCAACCACCACC 61.646 66.667 0.00 0.00 0.00 4.61
845 872 3.645975 GACACGCAACCACCACCG 61.646 66.667 0.00 0.00 0.00 4.94
875 902 4.057428 GCGTCACCGAGCTCACCT 62.057 66.667 15.40 0.00 35.63 4.00
876 903 2.651361 CGTCACCGAGCTCACCTT 59.349 61.111 15.40 0.00 35.63 3.50
877 904 1.734477 CGTCACCGAGCTCACCTTG 60.734 63.158 15.40 4.59 35.63 3.61
885 912 4.752879 GCTCACCTTGGCGGCGTA 62.753 66.667 9.37 0.00 35.61 4.42
886 913 2.509336 CTCACCTTGGCGGCGTAG 60.509 66.667 9.37 4.07 35.61 3.51
901 928 2.915738 CGTAGCAGGAGAAGTACGTT 57.084 50.000 0.00 0.00 34.84 3.99
902 929 2.516923 CGTAGCAGGAGAAGTACGTTG 58.483 52.381 0.00 0.00 34.84 4.10
903 930 2.260481 GTAGCAGGAGAAGTACGTTGC 58.740 52.381 0.00 0.00 0.00 4.17
904 931 0.037232 AGCAGGAGAAGTACGTTGCC 60.037 55.000 0.00 0.00 0.00 4.52
905 932 1.352156 GCAGGAGAAGTACGTTGCCG 61.352 60.000 0.00 0.00 40.83 5.69
906 933 0.736325 CAGGAGAAGTACGTTGCCGG 60.736 60.000 0.00 0.00 38.78 6.13
907 934 2.098831 GGAGAAGTACGTTGCCGGC 61.099 63.158 22.73 22.73 38.78 6.13
908 935 1.373748 GAGAAGTACGTTGCCGGCA 60.374 57.895 29.03 29.03 38.78 5.69
909 936 0.739813 GAGAAGTACGTTGCCGGCAT 60.740 55.000 33.25 19.10 38.78 4.40
910 937 0.533491 AGAAGTACGTTGCCGGCATA 59.467 50.000 33.25 17.85 38.78 3.14
911 938 0.648958 GAAGTACGTTGCCGGCATAC 59.351 55.000 33.25 28.15 38.78 2.39
912 939 0.741927 AAGTACGTTGCCGGCATACC 60.742 55.000 33.25 19.92 38.78 2.73
913 940 2.175621 GTACGTTGCCGGCATACCC 61.176 63.158 33.25 17.27 38.78 3.69
914 941 2.360767 TACGTTGCCGGCATACCCT 61.361 57.895 33.25 17.97 38.78 4.34
915 942 2.581208 TACGTTGCCGGCATACCCTG 62.581 60.000 33.25 18.09 38.78 4.45
923 950 2.267642 GCATACCCTGCGACCACA 59.732 61.111 0.00 0.00 41.97 4.17
924 951 2.106683 GCATACCCTGCGACCACAC 61.107 63.158 0.00 0.00 41.97 3.82
925 952 1.809619 CATACCCTGCGACCACACG 60.810 63.158 0.00 0.00 0.00 4.49
933 960 4.450122 CGACCACACGCATGCTGC 62.450 66.667 17.13 0.00 40.69 5.25
934 961 3.356267 GACCACACGCATGCTGCA 61.356 61.111 17.13 4.13 45.36 4.41
935 962 3.318539 GACCACACGCATGCTGCAG 62.319 63.158 17.13 10.11 45.36 4.41
936 963 4.771356 CCACACGCATGCTGCAGC 62.771 66.667 31.89 31.89 45.36 5.25
978 1005 4.308458 CCAGACCGGGCACGACAA 62.308 66.667 11.66 0.00 44.60 3.18
979 1006 2.738521 CAGACCGGGCACGACAAG 60.739 66.667 11.66 0.00 44.60 3.16
980 1007 4.681978 AGACCGGGCACGACAAGC 62.682 66.667 11.66 0.00 44.60 4.01
990 1017 3.014036 CGACAAGCGTGCAACTGT 58.986 55.556 0.00 0.00 34.64 3.55
991 1018 1.351707 CGACAAGCGTGCAACTGTT 59.648 52.632 0.00 0.00 34.64 3.16
992 1019 0.654472 CGACAAGCGTGCAACTGTTC 60.654 55.000 0.00 0.00 34.64 3.18
993 1020 0.657840 GACAAGCGTGCAACTGTTCT 59.342 50.000 0.00 0.00 31.75 3.01
994 1021 0.657840 ACAAGCGTGCAACTGTTCTC 59.342 50.000 0.00 0.00 31.75 2.87
995 1022 0.657312 CAAGCGTGCAACTGTTCTCA 59.343 50.000 0.00 0.00 31.75 3.27
996 1023 0.940126 AAGCGTGCAACTGTTCTCAG 59.060 50.000 0.00 0.00 46.18 3.35
1005 1032 3.802613 CTGTTCTCAGTCACCGGAG 57.197 57.895 9.46 0.00 36.97 4.63
1006 1033 0.389166 CTGTTCTCAGTCACCGGAGC 60.389 60.000 9.46 0.00 36.97 4.70
1007 1034 0.827925 TGTTCTCAGTCACCGGAGCT 60.828 55.000 9.46 0.00 33.46 4.09
1008 1035 0.389166 GTTCTCAGTCACCGGAGCTG 60.389 60.000 9.46 12.61 33.46 4.24
1009 1036 2.125753 CTCAGTCACCGGAGCTGC 60.126 66.667 9.46 0.00 0.00 5.25
1010 1037 2.917227 TCAGTCACCGGAGCTGCA 60.917 61.111 9.46 0.49 0.00 4.41
1011 1038 2.433838 CAGTCACCGGAGCTGCAG 60.434 66.667 9.46 10.11 0.00 4.41
1012 1039 3.699894 AGTCACCGGAGCTGCAGG 61.700 66.667 17.12 10.20 37.91 4.85
1013 1040 4.008933 GTCACCGGAGCTGCAGGT 62.009 66.667 20.31 20.31 46.64 4.00
1014 1041 3.695606 TCACCGGAGCTGCAGGTC 61.696 66.667 32.87 32.87 43.66 3.85
1025 1052 3.807538 GCAGGTCCAGCATGCGTG 61.808 66.667 13.01 10.84 45.11 5.34
1026 1053 2.359107 CAGGTCCAGCATGCGTGT 60.359 61.111 13.01 0.00 31.97 4.49
1027 1054 2.359107 AGGTCCAGCATGCGTGTG 60.359 61.111 13.01 5.14 31.97 3.82
1028 1055 2.669569 GGTCCAGCATGCGTGTGT 60.670 61.111 13.01 0.00 31.97 3.72
1029 1056 2.557805 GTCCAGCATGCGTGTGTG 59.442 61.111 13.01 4.32 31.97 3.82
1030 1057 2.669229 TCCAGCATGCGTGTGTGG 60.669 61.111 18.60 18.60 34.59 4.17
1031 1058 3.740397 CCAGCATGCGTGTGTGGG 61.740 66.667 13.01 7.09 31.52 4.61
1032 1059 4.409218 CAGCATGCGTGTGTGGGC 62.409 66.667 13.01 0.00 0.00 5.36
1049 1076 4.697756 CCGTGTGGGCGTGATGGT 62.698 66.667 0.00 0.00 0.00 3.55
1050 1077 3.422303 CGTGTGGGCGTGATGGTG 61.422 66.667 0.00 0.00 0.00 4.17
1051 1078 3.737172 GTGTGGGCGTGATGGTGC 61.737 66.667 0.00 0.00 0.00 5.01
1052 1079 4.262089 TGTGGGCGTGATGGTGCA 62.262 61.111 0.00 0.00 0.00 4.57
1053 1080 3.434319 GTGGGCGTGATGGTGCAG 61.434 66.667 0.00 0.00 0.00 4.41
1054 1081 4.720902 TGGGCGTGATGGTGCAGG 62.721 66.667 0.00 0.00 0.00 4.85
1055 1082 4.408821 GGGCGTGATGGTGCAGGA 62.409 66.667 0.00 0.00 0.00 3.86
1056 1083 3.127533 GGCGTGATGGTGCAGGAC 61.128 66.667 0.00 0.00 0.00 3.85
1057 1084 3.490759 GCGTGATGGTGCAGGACG 61.491 66.667 0.00 0.00 0.00 4.79
1058 1085 2.048222 CGTGATGGTGCAGGACGT 60.048 61.111 0.00 0.00 0.00 4.34
1059 1086 2.094659 CGTGATGGTGCAGGACGTC 61.095 63.158 7.13 7.13 0.00 4.34
1060 1087 1.005037 GTGATGGTGCAGGACGTCA 60.005 57.895 18.91 4.31 0.00 4.35
1061 1088 1.005037 TGATGGTGCAGGACGTCAC 60.005 57.895 18.91 7.25 0.00 3.67
1062 1089 1.005037 GATGGTGCAGGACGTCACA 60.005 57.895 18.91 9.47 35.04 3.58
1063 1090 1.291877 GATGGTGCAGGACGTCACAC 61.292 60.000 18.91 20.12 35.04 3.82
1085 1112 3.670991 CGTAAGTGAGACAGACAAAGAGC 59.329 47.826 0.00 0.00 0.00 4.09
1086 1113 3.827008 AAGTGAGACAGACAAAGAGCA 57.173 42.857 0.00 0.00 0.00 4.26
1087 1114 3.383620 AGTGAGACAGACAAAGAGCAG 57.616 47.619 0.00 0.00 0.00 4.24
1088 1115 2.961741 AGTGAGACAGACAAAGAGCAGA 59.038 45.455 0.00 0.00 0.00 4.26
1089 1116 3.386078 AGTGAGACAGACAAAGAGCAGAA 59.614 43.478 0.00 0.00 0.00 3.02
1090 1117 4.122776 GTGAGACAGACAAAGAGCAGAAA 58.877 43.478 0.00 0.00 0.00 2.52
1091 1118 4.754114 GTGAGACAGACAAAGAGCAGAAAT 59.246 41.667 0.00 0.00 0.00 2.17
1092 1119 4.993584 TGAGACAGACAAAGAGCAGAAATC 59.006 41.667 0.00 0.00 0.00 2.17
1093 1120 4.965814 AGACAGACAAAGAGCAGAAATCA 58.034 39.130 0.00 0.00 0.00 2.57
1094 1121 5.371526 AGACAGACAAAGAGCAGAAATCAA 58.628 37.500 0.00 0.00 0.00 2.57
1095 1122 5.824624 AGACAGACAAAGAGCAGAAATCAAA 59.175 36.000 0.00 0.00 0.00 2.69
1096 1123 6.017275 AGACAGACAAAGAGCAGAAATCAAAG 60.017 38.462 0.00 0.00 0.00 2.77
1097 1124 5.591877 ACAGACAAAGAGCAGAAATCAAAGT 59.408 36.000 0.00 0.00 0.00 2.66
1098 1125 5.913514 CAGACAAAGAGCAGAAATCAAAGTG 59.086 40.000 0.00 0.00 0.00 3.16
1099 1126 5.824624 AGACAAAGAGCAGAAATCAAAGTGA 59.175 36.000 0.00 0.00 0.00 3.41
1100 1127 6.319658 AGACAAAGAGCAGAAATCAAAGTGAA 59.680 34.615 0.00 0.00 0.00 3.18
1101 1128 6.866480 ACAAAGAGCAGAAATCAAAGTGAAA 58.134 32.000 0.00 0.00 0.00 2.69
1102 1129 7.322664 ACAAAGAGCAGAAATCAAAGTGAAAA 58.677 30.769 0.00 0.00 0.00 2.29
1103 1130 7.818930 ACAAAGAGCAGAAATCAAAGTGAAAAA 59.181 29.630 0.00 0.00 0.00 1.94
1123 1150 2.664402 AATGGATAGATGTGGTGGGC 57.336 50.000 0.00 0.00 0.00 5.36
1124 1151 0.773644 ATGGATAGATGTGGTGGGCC 59.226 55.000 0.00 0.00 0.00 5.80
1125 1152 0.623031 TGGATAGATGTGGTGGGCCA 60.623 55.000 0.00 0.00 43.73 5.36
1137 1164 2.131405 TGGGCCACACATTTGTTGG 58.869 52.632 0.00 7.25 31.66 3.77
1138 1165 0.689080 TGGGCCACACATTTGTTGGT 60.689 50.000 0.00 0.00 31.66 3.67
1139 1166 0.467804 GGGCCACACATTTGTTGGTT 59.532 50.000 4.39 0.00 31.66 3.67
1140 1167 1.540146 GGGCCACACATTTGTTGGTTC 60.540 52.381 4.39 6.44 31.66 3.62
1141 1168 1.540146 GGCCACACATTTGTTGGTTCC 60.540 52.381 0.00 4.54 31.66 3.62
1142 1169 1.137872 GCCACACATTTGTTGGTTCCA 59.862 47.619 11.14 0.00 31.66 3.53
1143 1170 2.820330 CCACACATTTGTTGGTTCCAC 58.180 47.619 0.00 0.00 31.66 4.02
1144 1171 2.458951 CACACATTTGTTGGTTCCACG 58.541 47.619 0.00 0.00 31.66 4.94
1145 1172 1.202359 ACACATTTGTTGGTTCCACGC 60.202 47.619 0.00 0.00 28.43 5.34
1146 1173 0.387565 ACATTTGTTGGTTCCACGCC 59.612 50.000 0.00 0.00 0.00 5.68
1147 1174 0.387202 CATTTGTTGGTTCCACGCCA 59.613 50.000 0.00 0.00 0.00 5.69
1148 1175 0.387565 ATTTGTTGGTTCCACGCCAC 59.612 50.000 0.00 0.00 35.46 5.01
1149 1176 1.994507 TTTGTTGGTTCCACGCCACG 61.995 55.000 0.00 0.00 35.46 4.94
1150 1177 2.898343 GTTGGTTCCACGCCACGT 60.898 61.111 0.00 0.00 42.36 4.49
1151 1178 2.589442 TTGGTTCCACGCCACGTC 60.589 61.111 0.00 0.00 38.32 4.34
1152 1179 4.953868 TGGTTCCACGCCACGTCG 62.954 66.667 0.00 0.00 38.32 5.12
1153 1180 4.651008 GGTTCCACGCCACGTCGA 62.651 66.667 0.00 0.00 38.32 4.20
1154 1181 3.400590 GTTCCACGCCACGTCGAC 61.401 66.667 5.18 5.18 38.32 4.20
1155 1182 3.902086 TTCCACGCCACGTCGACA 61.902 61.111 17.16 0.00 38.32 4.35
1156 1183 3.427598 TTCCACGCCACGTCGACAA 62.428 57.895 17.16 0.00 38.32 3.18
1157 1184 2.902759 TTCCACGCCACGTCGACAAA 62.903 55.000 17.16 0.00 38.32 2.83
1158 1185 2.526993 CCACGCCACGTCGACAAAA 61.527 57.895 17.16 0.00 38.32 2.44
1159 1186 1.348938 CACGCCACGTCGACAAAAA 59.651 52.632 17.16 0.00 38.32 1.94
1177 1204 2.736670 AAAACACTTGGAGCAGGACT 57.263 45.000 0.00 0.00 0.00 3.85
1178 1205 3.857157 AAAACACTTGGAGCAGGACTA 57.143 42.857 0.00 0.00 0.00 2.59
1179 1206 3.857157 AAACACTTGGAGCAGGACTAA 57.143 42.857 0.00 0.00 0.00 2.24
1180 1207 3.857157 AACACTTGGAGCAGGACTAAA 57.143 42.857 0.00 0.00 0.00 1.85
1181 1208 3.127425 ACACTTGGAGCAGGACTAAAC 57.873 47.619 0.00 0.00 0.00 2.01
1182 1209 2.706190 ACACTTGGAGCAGGACTAAACT 59.294 45.455 0.00 0.00 0.00 2.66
1183 1210 3.136626 ACACTTGGAGCAGGACTAAACTT 59.863 43.478 0.00 0.00 0.00 2.66
1184 1211 4.347000 ACACTTGGAGCAGGACTAAACTTA 59.653 41.667 0.00 0.00 0.00 2.24
1185 1212 5.013183 ACACTTGGAGCAGGACTAAACTTAT 59.987 40.000 0.00 0.00 0.00 1.73
1186 1213 5.582665 CACTTGGAGCAGGACTAAACTTATC 59.417 44.000 0.00 0.00 0.00 1.75
1187 1214 4.755266 TGGAGCAGGACTAAACTTATCC 57.245 45.455 0.00 0.00 0.00 2.59
1188 1215 3.132289 TGGAGCAGGACTAAACTTATCCG 59.868 47.826 0.00 0.00 37.60 4.18
1189 1216 3.492829 GGAGCAGGACTAAACTTATCCGG 60.493 52.174 0.00 0.00 37.60 5.14
1190 1217 3.105283 AGCAGGACTAAACTTATCCGGT 58.895 45.455 0.00 0.00 37.60 5.28
1191 1218 4.284178 AGCAGGACTAAACTTATCCGGTA 58.716 43.478 0.00 0.00 37.60 4.02
1192 1219 4.900054 AGCAGGACTAAACTTATCCGGTAT 59.100 41.667 0.00 0.00 37.60 2.73
1193 1220 5.365895 AGCAGGACTAAACTTATCCGGTATT 59.634 40.000 0.00 0.00 37.60 1.89
1194 1221 6.552350 AGCAGGACTAAACTTATCCGGTATTA 59.448 38.462 0.00 0.00 37.60 0.98
1195 1222 7.070322 AGCAGGACTAAACTTATCCGGTATTAA 59.930 37.037 0.00 0.00 37.60 1.40
1196 1223 7.712205 GCAGGACTAAACTTATCCGGTATTAAA 59.288 37.037 0.00 0.00 37.60 1.52
1197 1224 9.603921 CAGGACTAAACTTATCCGGTATTAAAA 57.396 33.333 0.00 0.00 37.60 1.52
1198 1225 9.828039 AGGACTAAACTTATCCGGTATTAAAAG 57.172 33.333 0.00 0.22 37.60 2.27
1199 1226 9.605275 GGACTAAACTTATCCGGTATTAAAAGT 57.395 33.333 0.00 0.86 0.00 2.66
1290 1317 1.787847 CGTTCTTGCGCGGAGATTT 59.212 52.632 8.83 0.00 0.00 2.17
1590 2176 3.426615 TGGTTGTTCCTCTCTCTCTCTC 58.573 50.000 0.00 0.00 37.07 3.20
1591 2177 3.075283 TGGTTGTTCCTCTCTCTCTCTCT 59.925 47.826 0.00 0.00 37.07 3.10
1662 2250 0.976641 TCAGTTCATGTCGCCCTCTT 59.023 50.000 0.00 0.00 0.00 2.85
1814 2418 3.106827 TGTTCATGTAGATGAGAGGGCA 58.893 45.455 2.46 0.00 39.81 5.36
2450 4819 9.968870 GTGTAGTTTTATGTGTAATTTTCCCAA 57.031 29.630 0.00 0.00 0.00 4.12
2763 5184 7.003402 ACAGTGCATTGTACCCATTTAATTT 57.997 32.000 13.85 0.00 0.00 1.82
3563 7612 4.290196 ACAGGTTTAAATGGGTAGGCTACA 59.710 41.667 24.96 7.14 0.00 2.74
4349 8900 7.122055 TGTGTCTCTCCTTTTGTTGTTTTGTAT 59.878 33.333 0.00 0.00 0.00 2.29
4542 9093 1.066143 TGAAGTGGCTTGCTAGTAGGC 60.066 52.381 6.37 6.37 38.56 3.93
5344 9971 8.946085 TGTTTTCAGTATGTTCTCATATGGAAC 58.054 33.333 21.03 21.03 42.17 3.62
5792 10452 8.751302 TTTGAAGTTCTTTCCTGTTTTGTTAC 57.249 30.769 4.17 0.00 34.77 2.50
5874 10542 8.610896 CATGTTGTTTCTTTATCCTTTTTGCAA 58.389 29.630 0.00 0.00 0.00 4.08
5999 10685 4.918810 TGAAGCTTCTCCTTTTGTTTCC 57.081 40.909 26.09 0.00 0.00 3.13
6698 11456 2.765502 GTCCCCTCTGGTTCCTATTCT 58.234 52.381 0.00 0.00 34.77 2.40
6926 11928 6.841229 AGTCAGATATCAATTAGACAGTCCCA 59.159 38.462 5.32 0.00 0.00 4.37
6927 11929 7.345653 AGTCAGATATCAATTAGACAGTCCCAA 59.654 37.037 5.32 0.00 0.00 4.12
6928 11930 7.987458 GTCAGATATCAATTAGACAGTCCCAAA 59.013 37.037 5.32 0.00 0.00 3.28
6929 11931 8.717717 TCAGATATCAATTAGACAGTCCCAAAT 58.282 33.333 5.32 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.378962 CATCCTCTCGTGTCTCGTCC 59.621 60.000 0.00 0.00 40.80 4.79
2 3 1.374560 CTCATCCTCTCGTGTCTCGT 58.625 55.000 0.00 0.00 40.80 4.18
3 4 0.660488 CCTCATCCTCTCGTGTCTCG 59.340 60.000 0.00 0.00 41.41 4.04
4 5 1.946768 CTCCTCATCCTCTCGTGTCTC 59.053 57.143 0.00 0.00 0.00 3.36
5 6 1.409521 CCTCCTCATCCTCTCGTGTCT 60.410 57.143 0.00 0.00 0.00 3.41
6 7 1.028905 CCTCCTCATCCTCTCGTGTC 58.971 60.000 0.00 0.00 0.00 3.67
7 8 0.626382 TCCTCCTCATCCTCTCGTGT 59.374 55.000 0.00 0.00 0.00 4.49
8 9 1.317613 CTCCTCCTCATCCTCTCGTG 58.682 60.000 0.00 0.00 0.00 4.35
9 10 0.184933 CCTCCTCCTCATCCTCTCGT 59.815 60.000 0.00 0.00 0.00 4.18
10 11 0.476338 TCCTCCTCCTCATCCTCTCG 59.524 60.000 0.00 0.00 0.00 4.04
11 12 1.216678 TGTCCTCCTCCTCATCCTCTC 59.783 57.143 0.00 0.00 0.00 3.20
12 13 1.217689 CTGTCCTCCTCCTCATCCTCT 59.782 57.143 0.00 0.00 0.00 3.69
13 14 1.216678 TCTGTCCTCCTCCTCATCCTC 59.783 57.143 0.00 0.00 0.00 3.71
14 15 1.217689 CTCTGTCCTCCTCCTCATCCT 59.782 57.143 0.00 0.00 0.00 3.24
15 16 1.703411 CTCTGTCCTCCTCCTCATCC 58.297 60.000 0.00 0.00 0.00 3.51
16 17 1.039856 GCTCTGTCCTCCTCCTCATC 58.960 60.000 0.00 0.00 0.00 2.92
17 18 0.754957 CGCTCTGTCCTCCTCCTCAT 60.755 60.000 0.00 0.00 0.00 2.90
18 19 1.379176 CGCTCTGTCCTCCTCCTCA 60.379 63.158 0.00 0.00 0.00 3.86
19 20 2.124693 CCGCTCTGTCCTCCTCCTC 61.125 68.421 0.00 0.00 0.00 3.71
20 21 2.043450 CCGCTCTGTCCTCCTCCT 60.043 66.667 0.00 0.00 0.00 3.69
21 22 2.043852 TCCGCTCTGTCCTCCTCC 60.044 66.667 0.00 0.00 0.00 4.30
22 23 2.419739 GGTCCGCTCTGTCCTCCTC 61.420 68.421 0.00 0.00 0.00 3.71
23 24 2.363147 GGTCCGCTCTGTCCTCCT 60.363 66.667 0.00 0.00 0.00 3.69
24 25 2.363147 AGGTCCGCTCTGTCCTCC 60.363 66.667 0.00 0.00 0.00 4.30
25 26 2.716017 CCAGGTCCGCTCTGTCCTC 61.716 68.421 0.00 0.00 0.00 3.71
26 27 2.151307 TACCAGGTCCGCTCTGTCCT 62.151 60.000 0.00 0.00 0.00 3.85
27 28 1.043673 ATACCAGGTCCGCTCTGTCC 61.044 60.000 0.00 0.00 0.00 4.02
28 29 0.103208 CATACCAGGTCCGCTCTGTC 59.897 60.000 0.00 0.00 0.00 3.51
29 30 1.330655 CCATACCAGGTCCGCTCTGT 61.331 60.000 0.00 0.00 0.00 3.41
30 31 1.043116 TCCATACCAGGTCCGCTCTG 61.043 60.000 0.00 0.00 0.00 3.35
31 32 0.757188 CTCCATACCAGGTCCGCTCT 60.757 60.000 0.00 0.00 0.00 4.09
32 33 1.043673 ACTCCATACCAGGTCCGCTC 61.044 60.000 0.00 0.00 0.00 5.03
33 34 1.001760 ACTCCATACCAGGTCCGCT 59.998 57.895 0.00 0.00 0.00 5.52
34 35 1.043673 AGACTCCATACCAGGTCCGC 61.044 60.000 0.00 0.00 0.00 5.54
35 36 1.486211 AAGACTCCATACCAGGTCCG 58.514 55.000 0.00 0.00 0.00 4.79
36 37 3.912248 TCTAAGACTCCATACCAGGTCC 58.088 50.000 0.00 0.00 0.00 4.46
37 38 4.342665 CCTTCTAAGACTCCATACCAGGTC 59.657 50.000 0.00 0.00 0.00 3.85
38 39 4.290942 CCTTCTAAGACTCCATACCAGGT 58.709 47.826 0.00 0.00 0.00 4.00
39 40 3.070302 GCCTTCTAAGACTCCATACCAGG 59.930 52.174 0.00 0.00 0.00 4.45
40 41 3.243569 CGCCTTCTAAGACTCCATACCAG 60.244 52.174 0.00 0.00 0.00 4.00
41 42 2.693591 CGCCTTCTAAGACTCCATACCA 59.306 50.000 0.00 0.00 0.00 3.25
42 43 2.036089 CCGCCTTCTAAGACTCCATACC 59.964 54.545 0.00 0.00 0.00 2.73
43 44 2.036089 CCCGCCTTCTAAGACTCCATAC 59.964 54.545 0.00 0.00 0.00 2.39
44 45 2.317040 CCCGCCTTCTAAGACTCCATA 58.683 52.381 0.00 0.00 0.00 2.74
45 46 1.123928 CCCGCCTTCTAAGACTCCAT 58.876 55.000 0.00 0.00 0.00 3.41
46 47 0.976073 CCCCGCCTTCTAAGACTCCA 60.976 60.000 0.00 0.00 0.00 3.86
47 48 1.687297 CCCCCGCCTTCTAAGACTCC 61.687 65.000 0.00 0.00 0.00 3.85
48 49 0.976590 ACCCCCGCCTTCTAAGACTC 60.977 60.000 0.00 0.00 0.00 3.36
49 50 1.080538 ACCCCCGCCTTCTAAGACT 59.919 57.895 0.00 0.00 0.00 3.24
50 51 1.221021 CACCCCCGCCTTCTAAGAC 59.779 63.158 0.00 0.00 0.00 3.01
51 52 1.993391 CCACCCCCGCCTTCTAAGA 60.993 63.158 0.00 0.00 0.00 2.10
52 53 2.590092 CCACCCCCGCCTTCTAAG 59.410 66.667 0.00 0.00 0.00 2.18
53 54 3.723922 GCCACCCCCGCCTTCTAA 61.724 66.667 0.00 0.00 0.00 2.10
81 82 0.032267 GATACTGCTCTACGGGTGCC 59.968 60.000 0.00 0.00 33.94 5.01
82 83 0.317938 CGATACTGCTCTACGGGTGC 60.318 60.000 0.00 0.00 35.27 5.01
83 84 1.306148 TCGATACTGCTCTACGGGTG 58.694 55.000 0.00 0.00 0.00 4.61
84 85 2.273538 ATCGATACTGCTCTACGGGT 57.726 50.000 0.00 0.00 0.00 5.28
85 86 3.001431 CGATATCGATACTGCTCTACGGG 59.999 52.174 20.50 0.00 43.02 5.28
86 87 3.544440 GCGATATCGATACTGCTCTACGG 60.544 52.174 28.63 0.00 43.02 4.02
87 88 3.544440 GGCGATATCGATACTGCTCTACG 60.544 52.174 28.63 13.07 43.02 3.51
88 89 3.242804 GGGCGATATCGATACTGCTCTAC 60.243 52.174 28.63 5.90 43.02 2.59
89 90 2.943690 GGGCGATATCGATACTGCTCTA 59.056 50.000 28.63 0.00 43.02 2.43
90 91 1.746220 GGGCGATATCGATACTGCTCT 59.254 52.381 28.63 2.74 43.02 4.09
91 92 1.472878 TGGGCGATATCGATACTGCTC 59.527 52.381 28.63 20.89 43.02 4.26
92 93 1.474478 CTGGGCGATATCGATACTGCT 59.526 52.381 28.63 3.73 43.02 4.24
93 94 1.202582 ACTGGGCGATATCGATACTGC 59.797 52.381 28.63 17.96 43.02 4.40
94 95 2.476352 CGACTGGGCGATATCGATACTG 60.476 54.545 28.63 20.07 43.02 2.74
95 96 1.738350 CGACTGGGCGATATCGATACT 59.262 52.381 28.63 5.92 43.02 2.12
96 97 1.467734 ACGACTGGGCGATATCGATAC 59.532 52.381 28.63 16.55 43.02 2.24
97 98 1.736126 GACGACTGGGCGATATCGATA 59.264 52.381 28.63 7.75 43.02 2.92
98 99 0.522180 GACGACTGGGCGATATCGAT 59.478 55.000 28.63 2.16 43.02 3.59
99 100 1.838568 CGACGACTGGGCGATATCGA 61.839 60.000 28.63 7.06 43.02 3.59
100 101 1.440518 CGACGACTGGGCGATATCG 60.441 63.158 20.79 20.79 43.27 2.92
101 102 1.729838 GCGACGACTGGGCGATATC 60.730 63.158 1.84 0.00 34.83 1.63
102 103 2.194212 AGCGACGACTGGGCGATAT 61.194 57.895 1.84 0.00 34.83 1.63
103 104 2.827190 AGCGACGACTGGGCGATA 60.827 61.111 1.84 0.00 34.83 2.92
104 105 4.498520 CAGCGACGACTGGGCGAT 62.499 66.667 1.84 0.00 33.85 4.58
110 111 3.114616 CTTGGCCAGCGACGACTG 61.115 66.667 5.11 5.65 37.42 3.51
111 112 3.288308 CTCTTGGCCAGCGACGACT 62.288 63.158 5.11 0.00 0.00 4.18
112 113 2.765250 TTCTCTTGGCCAGCGACGAC 62.765 60.000 5.11 0.00 0.00 4.34
113 114 2.492449 CTTCTCTTGGCCAGCGACGA 62.492 60.000 5.11 4.17 0.00 4.20
114 115 2.048222 TTCTCTTGGCCAGCGACG 60.048 61.111 5.11 1.89 0.00 5.12
115 116 1.743252 CCTTCTCTTGGCCAGCGAC 60.743 63.158 5.11 0.00 0.00 5.19
116 117 2.665000 CCTTCTCTTGGCCAGCGA 59.335 61.111 5.11 6.06 0.00 4.93
117 118 2.437359 CCCTTCTCTTGGCCAGCG 60.437 66.667 5.11 0.87 0.00 5.18
118 119 1.377856 GTCCCTTCTCTTGGCCAGC 60.378 63.158 5.11 0.00 0.00 4.85
119 120 1.078848 CGTCCCTTCTCTTGGCCAG 60.079 63.158 5.11 0.00 0.00 4.85
120 121 1.535444 TCGTCCCTTCTCTTGGCCA 60.535 57.895 0.00 0.00 0.00 5.36
121 122 1.219393 CTCGTCCCTTCTCTTGGCC 59.781 63.158 0.00 0.00 0.00 5.36
122 123 0.174617 CTCTCGTCCCTTCTCTTGGC 59.825 60.000 0.00 0.00 0.00 4.52
123 124 1.748493 CTCTCTCGTCCCTTCTCTTGG 59.252 57.143 0.00 0.00 0.00 3.61
124 125 2.682856 CTCTCTCTCGTCCCTTCTCTTG 59.317 54.545 0.00 0.00 0.00 3.02
125 126 2.574369 TCTCTCTCTCGTCCCTTCTCTT 59.426 50.000 0.00 0.00 0.00 2.85
126 127 2.170607 CTCTCTCTCTCGTCCCTTCTCT 59.829 54.545 0.00 0.00 0.00 3.10
127 128 2.561569 CTCTCTCTCTCGTCCCTTCTC 58.438 57.143 0.00 0.00 0.00 2.87
128 129 1.211949 CCTCTCTCTCTCGTCCCTTCT 59.788 57.143 0.00 0.00 0.00 2.85
129 130 1.675552 CCTCTCTCTCTCGTCCCTTC 58.324 60.000 0.00 0.00 0.00 3.46
130 131 0.257616 CCCTCTCTCTCTCGTCCCTT 59.742 60.000 0.00 0.00 0.00 3.95
131 132 0.917333 ACCCTCTCTCTCTCGTCCCT 60.917 60.000 0.00 0.00 0.00 4.20
132 133 0.750182 CACCCTCTCTCTCTCGTCCC 60.750 65.000 0.00 0.00 0.00 4.46
133 134 0.253610 TCACCCTCTCTCTCTCGTCC 59.746 60.000 0.00 0.00 0.00 4.79
134 135 1.663695 CTCACCCTCTCTCTCTCGTC 58.336 60.000 0.00 0.00 0.00 4.20
135 136 0.254747 CCTCACCCTCTCTCTCTCGT 59.745 60.000 0.00 0.00 0.00 4.18
136 137 0.465460 CCCTCACCCTCTCTCTCTCG 60.465 65.000 0.00 0.00 0.00 4.04
137 138 0.923358 TCCCTCACCCTCTCTCTCTC 59.077 60.000 0.00 0.00 0.00 3.20
138 139 1.287739 CTTCCCTCACCCTCTCTCTCT 59.712 57.143 0.00 0.00 0.00 3.10
139 140 1.687996 CCTTCCCTCACCCTCTCTCTC 60.688 61.905 0.00 0.00 0.00 3.20
140 141 0.338120 CCTTCCCTCACCCTCTCTCT 59.662 60.000 0.00 0.00 0.00 3.10
141 142 0.336737 TCCTTCCCTCACCCTCTCTC 59.663 60.000 0.00 0.00 0.00 3.20
142 143 0.338120 CTCCTTCCCTCACCCTCTCT 59.662 60.000 0.00 0.00 0.00 3.10
143 144 0.689412 CCTCCTTCCCTCACCCTCTC 60.689 65.000 0.00 0.00 0.00 3.20
144 145 1.394151 CCTCCTTCCCTCACCCTCT 59.606 63.158 0.00 0.00 0.00 3.69
145 146 2.371259 GCCTCCTTCCCTCACCCTC 61.371 68.421 0.00 0.00 0.00 4.30
146 147 2.285743 GCCTCCTTCCCTCACCCT 60.286 66.667 0.00 0.00 0.00 4.34
147 148 3.412408 GGCCTCCTTCCCTCACCC 61.412 72.222 0.00 0.00 0.00 4.61
148 149 3.412408 GGGCCTCCTTCCCTCACC 61.412 72.222 0.84 0.00 40.66 4.02
149 150 2.203549 CTTGGGCCTCCTTCCCTCAC 62.204 65.000 4.53 0.00 44.23 3.51
150 151 1.925455 CTTGGGCCTCCTTCCCTCA 60.925 63.158 4.53 0.00 44.23 3.86
151 152 3.002371 CTTGGGCCTCCTTCCCTC 58.998 66.667 4.53 0.00 44.23 4.30
152 153 3.342477 GCTTGGGCCTCCTTCCCT 61.342 66.667 4.53 0.00 44.23 4.20
153 154 3.342477 AGCTTGGGCCTCCTTCCC 61.342 66.667 4.53 0.00 44.17 3.97
154 155 1.857638 AAGAGCTTGGGCCTCCTTCC 61.858 60.000 4.53 0.00 39.73 3.46
155 156 0.393673 GAAGAGCTTGGGCCTCCTTC 60.394 60.000 4.53 6.64 39.73 3.46
156 157 0.844221 AGAAGAGCTTGGGCCTCCTT 60.844 55.000 4.53 0.53 39.73 3.36
157 158 0.844221 AAGAAGAGCTTGGGCCTCCT 60.844 55.000 4.53 0.00 39.73 3.69
158 159 0.393673 GAAGAAGAGCTTGGGCCTCC 60.394 60.000 4.53 0.00 36.83 4.30
159 160 0.617935 AGAAGAAGAGCTTGGGCCTC 59.382 55.000 4.53 0.00 36.83 4.70
160 161 0.617935 GAGAAGAAGAGCTTGGGCCT 59.382 55.000 4.53 0.00 36.83 5.19
161 162 0.326264 TGAGAAGAAGAGCTTGGGCC 59.674 55.000 0.00 0.00 36.83 5.80
162 163 2.191128 TTGAGAAGAAGAGCTTGGGC 57.809 50.000 0.00 0.00 36.83 5.36
163 164 4.392940 TCTTTTGAGAAGAAGAGCTTGGG 58.607 43.478 0.00 0.00 36.83 4.12
164 165 6.382869 TTTCTTTTGAGAAGAAGAGCTTGG 57.617 37.500 0.00 0.00 37.54 3.61
165 166 7.701445 TCTTTTCTTTTGAGAAGAAGAGCTTG 58.299 34.615 10.10 0.00 43.74 4.01
166 167 7.872113 TCTTTTCTTTTGAGAAGAAGAGCTT 57.128 32.000 10.10 0.00 43.74 3.74
191 192 3.564225 CCAGCGAGAACTTGGTACTTTTT 59.436 43.478 0.00 0.00 0.00 1.94
192 193 3.139077 CCAGCGAGAACTTGGTACTTTT 58.861 45.455 0.00 0.00 0.00 2.27
193 194 2.367567 TCCAGCGAGAACTTGGTACTTT 59.632 45.455 0.00 0.00 33.65 2.66
194 195 1.968493 TCCAGCGAGAACTTGGTACTT 59.032 47.619 0.00 0.00 33.65 2.24
195 196 1.546476 CTCCAGCGAGAACTTGGTACT 59.454 52.381 0.00 0.00 38.52 2.73
196 197 1.544691 TCTCCAGCGAGAACTTGGTAC 59.455 52.381 0.00 0.00 42.33 3.34
197 198 1.544691 GTCTCCAGCGAGAACTTGGTA 59.455 52.381 0.00 0.00 46.74 3.25
198 199 0.318762 GTCTCCAGCGAGAACTTGGT 59.681 55.000 0.00 0.00 46.74 3.67
199 200 0.734253 CGTCTCCAGCGAGAACTTGG 60.734 60.000 0.00 0.00 46.74 3.61
200 201 0.734253 CCGTCTCCAGCGAGAACTTG 60.734 60.000 0.00 0.00 46.74 3.16
201 202 1.587054 CCGTCTCCAGCGAGAACTT 59.413 57.895 0.00 0.00 46.74 2.66
202 203 2.995872 GCCGTCTCCAGCGAGAACT 61.996 63.158 0.00 0.00 46.74 3.01
203 204 2.507324 GCCGTCTCCAGCGAGAAC 60.507 66.667 0.00 0.00 46.74 3.01
204 205 2.094757 TTTGCCGTCTCCAGCGAGAA 62.095 55.000 0.00 0.00 46.74 2.87
205 206 2.492449 CTTTGCCGTCTCCAGCGAGA 62.492 60.000 0.00 0.00 43.08 4.04
206 207 2.048222 TTTGCCGTCTCCAGCGAG 60.048 61.111 0.00 0.00 37.48 5.03
207 208 2.048222 CTTTGCCGTCTCCAGCGA 60.048 61.111 0.00 0.00 0.00 4.93
208 209 1.507141 AAACTTTGCCGTCTCCAGCG 61.507 55.000 0.00 0.00 0.00 5.18
209 210 0.668535 AAAACTTTGCCGTCTCCAGC 59.331 50.000 0.00 0.00 0.00 4.85
210 211 2.222027 AGAAAACTTTGCCGTCTCCAG 58.778 47.619 0.00 0.00 0.00 3.86
211 212 2.341846 AGAAAACTTTGCCGTCTCCA 57.658 45.000 0.00 0.00 0.00 3.86
212 213 2.742589 CCTAGAAAACTTTGCCGTCTCC 59.257 50.000 0.00 0.00 0.00 3.71
213 214 3.400255 ACCTAGAAAACTTTGCCGTCTC 58.600 45.455 0.00 0.00 0.00 3.36
214 215 3.487120 ACCTAGAAAACTTTGCCGTCT 57.513 42.857 0.00 0.00 0.00 4.18
215 216 4.563337 AAACCTAGAAAACTTTGCCGTC 57.437 40.909 0.00 0.00 0.00 4.79
216 217 4.496840 CGAAAACCTAGAAAACTTTGCCGT 60.497 41.667 0.00 0.00 0.00 5.68
217 218 3.972502 CGAAAACCTAGAAAACTTTGCCG 59.027 43.478 0.00 0.00 0.00 5.69
218 219 4.928601 ACGAAAACCTAGAAAACTTTGCC 58.071 39.130 0.00 0.00 0.00 4.52
219 220 6.140786 CCTACGAAAACCTAGAAAACTTTGC 58.859 40.000 0.00 0.00 0.00 3.68
220 221 6.140786 GCCTACGAAAACCTAGAAAACTTTG 58.859 40.000 0.00 0.00 0.00 2.77
221 222 5.049886 CGCCTACGAAAACCTAGAAAACTTT 60.050 40.000 0.00 0.00 43.93 2.66
222 223 4.450080 CGCCTACGAAAACCTAGAAAACTT 59.550 41.667 0.00 0.00 43.93 2.66
223 224 3.992427 CGCCTACGAAAACCTAGAAAACT 59.008 43.478 0.00 0.00 43.93 2.66
224 225 4.317804 CGCCTACGAAAACCTAGAAAAC 57.682 45.455 0.00 0.00 43.93 2.43
238 239 2.352001 CGTGGTCGATCGCCTACG 60.352 66.667 19.85 19.85 39.71 3.51
239 240 2.025727 CCGTGGTCGATCGCCTAC 59.974 66.667 22.99 14.86 39.71 3.18
240 241 3.896133 GCCGTGGTCGATCGCCTA 61.896 66.667 22.99 4.13 39.71 3.93
244 245 3.186047 GTTGGCCGTGGTCGATCG 61.186 66.667 9.36 9.36 39.71 3.69
245 246 2.047655 TGTTGGCCGTGGTCGATC 60.048 61.111 0.00 0.00 39.71 3.69
246 247 2.047274 CTGTTGGCCGTGGTCGAT 60.047 61.111 0.00 0.00 39.71 3.59
247 248 2.596553 AAACTGTTGGCCGTGGTCGA 62.597 55.000 0.00 0.00 39.71 4.20
248 249 1.720694 AAAACTGTTGGCCGTGGTCG 61.721 55.000 0.00 0.00 0.00 4.79
249 250 0.458260 AAAAACTGTTGGCCGTGGTC 59.542 50.000 0.00 0.00 0.00 4.02
250 251 0.174617 CAAAAACTGTTGGCCGTGGT 59.825 50.000 0.00 0.00 0.00 4.16
251 252 0.529555 CCAAAAACTGTTGGCCGTGG 60.530 55.000 0.00 0.00 41.63 4.94
252 253 2.970576 CCAAAAACTGTTGGCCGTG 58.029 52.632 0.00 0.00 41.63 4.94
286 287 3.134081 ACTTTCGAAGAAGTTGAGGGACA 59.866 43.478 0.00 0.00 45.90 4.02
287 288 3.729966 ACTTTCGAAGAAGTTGAGGGAC 58.270 45.455 0.00 0.00 45.90 4.46
318 319 6.709018 TTGCTAATATTAAAGTTCAGGGGC 57.291 37.500 0.00 0.00 0.00 5.80
319 320 7.342026 AGGTTTGCTAATATTAAAGTTCAGGGG 59.658 37.037 0.00 0.00 0.00 4.79
355 356 3.553904 ACCACCTGCGGTTTTAAAAGTA 58.446 40.909 0.00 0.00 34.91 2.24
385 412 6.548441 TTTAGTCAAAAACCACTCCATACG 57.452 37.500 0.00 0.00 0.00 3.06
435 462 4.144681 GCAGCAGCGCGAAGTCTG 62.145 66.667 12.10 8.95 0.00 3.51
459 486 2.202837 GTACTACCGCCAAGGCCG 60.203 66.667 5.34 1.30 46.52 6.13
499 526 1.880340 CCTTCGTGCCGATGAGCTC 60.880 63.158 6.82 6.82 35.23 4.09
677 704 2.974148 CAGGCTCGTTGTGCTGCA 60.974 61.111 0.00 0.00 0.00 4.41
728 755 2.740055 GGTCCACTCAGCACAGCG 60.740 66.667 0.00 0.00 0.00 5.18
729 756 2.740055 CGGTCCACTCAGCACAGC 60.740 66.667 0.00 0.00 0.00 4.40
730 757 2.740055 GCGGTCCACTCAGCACAG 60.740 66.667 0.00 0.00 0.00 3.66
731 758 4.314440 GGCGGTCCACTCAGCACA 62.314 66.667 0.00 0.00 0.00 4.57
735 762 4.778415 CGACGGCGGTCCACTCAG 62.778 72.222 17.71 0.04 40.17 3.35
737 764 4.047059 TTCGACGGCGGTCCACTC 62.047 66.667 12.58 0.00 40.17 3.51
738 765 4.353437 GTTCGACGGCGGTCCACT 62.353 66.667 12.58 0.00 40.17 4.00
753 780 0.949105 GGTGGAGTGAACATCGCGTT 60.949 55.000 5.77 0.00 41.86 4.84
754 781 1.374252 GGTGGAGTGAACATCGCGT 60.374 57.895 5.77 0.00 30.95 6.01
755 782 2.444624 CGGTGGAGTGAACATCGCG 61.445 63.158 0.00 0.00 35.52 5.87
756 783 3.474806 CGGTGGAGTGAACATCGC 58.525 61.111 0.00 0.00 35.52 4.58
757 784 2.100631 GGCGGTGGAGTGAACATCG 61.101 63.158 0.00 0.00 44.77 3.84
758 785 1.003839 TGGCGGTGGAGTGAACATC 60.004 57.895 0.00 0.00 0.00 3.06
759 786 1.302511 GTGGCGGTGGAGTGAACAT 60.303 57.895 0.00 0.00 0.00 2.71
760 787 2.110213 GTGGCGGTGGAGTGAACA 59.890 61.111 0.00 0.00 0.00 3.18
761 788 2.668550 GGTGGCGGTGGAGTGAAC 60.669 66.667 0.00 0.00 0.00 3.18
762 789 2.847234 AGGTGGCGGTGGAGTGAA 60.847 61.111 0.00 0.00 0.00 3.18
763 790 3.311110 GAGGTGGCGGTGGAGTGA 61.311 66.667 0.00 0.00 0.00 3.41
764 791 4.742201 CGAGGTGGCGGTGGAGTG 62.742 72.222 0.00 0.00 0.00 3.51
788 815 3.568743 TGGCACAACACGCACGAC 61.569 61.111 0.00 0.00 31.92 4.34
789 816 3.568743 GTGGCACAACACGCACGA 61.569 61.111 13.86 0.00 44.16 4.35
827 854 3.645975 GGTGGTGGTTGCGTGTCG 61.646 66.667 0.00 0.00 0.00 4.35
828 855 3.645975 CGGTGGTGGTTGCGTGTC 61.646 66.667 0.00 0.00 0.00 3.67
860 887 1.374758 CCAAGGTGAGCTCGGTGAC 60.375 63.158 9.64 0.87 0.00 3.67
861 888 3.059982 CCAAGGTGAGCTCGGTGA 58.940 61.111 9.64 0.00 0.00 4.02
862 889 2.743928 GCCAAGGTGAGCTCGGTG 60.744 66.667 9.64 4.11 0.00 4.94
863 890 4.379243 CGCCAAGGTGAGCTCGGT 62.379 66.667 9.64 0.00 0.00 4.69
872 899 4.760047 CTGCTACGCCGCCAAGGT 62.760 66.667 0.00 0.00 43.70 3.50
874 901 4.451150 TCCTGCTACGCCGCCAAG 62.451 66.667 0.00 0.00 0.00 3.61
875 902 4.451150 CTCCTGCTACGCCGCCAA 62.451 66.667 0.00 0.00 0.00 4.52
877 904 4.143333 TTCTCCTGCTACGCCGCC 62.143 66.667 0.00 0.00 0.00 6.13
878 905 2.001361 TACTTCTCCTGCTACGCCGC 62.001 60.000 0.00 0.00 0.00 6.53
879 906 0.248539 GTACTTCTCCTGCTACGCCG 60.249 60.000 0.00 0.00 0.00 6.46
880 907 0.248539 CGTACTTCTCCTGCTACGCC 60.249 60.000 0.00 0.00 0.00 5.68
881 908 0.450983 ACGTACTTCTCCTGCTACGC 59.549 55.000 0.00 0.00 36.31 4.42
882 909 2.516923 CAACGTACTTCTCCTGCTACG 58.483 52.381 0.00 0.00 38.33 3.51
883 910 2.260481 GCAACGTACTTCTCCTGCTAC 58.740 52.381 0.00 0.00 0.00 3.58
884 911 1.203994 GGCAACGTACTTCTCCTGCTA 59.796 52.381 4.76 0.00 0.00 3.49
885 912 0.037232 GGCAACGTACTTCTCCTGCT 60.037 55.000 4.76 0.00 0.00 4.24
886 913 2.457080 GGCAACGTACTTCTCCTGC 58.543 57.895 0.00 0.00 0.00 4.85
907 934 1.809619 CGTGTGGTCGCAGGGTATG 60.810 63.158 0.00 0.00 0.00 2.39
908 935 2.577059 CGTGTGGTCGCAGGGTAT 59.423 61.111 0.00 0.00 0.00 2.73
961 988 4.308458 TTGTCGTGCCCGGTCTGG 62.308 66.667 0.00 0.00 37.55 3.86
962 989 2.738521 CTTGTCGTGCCCGGTCTG 60.739 66.667 0.00 0.00 33.95 3.51
963 990 4.681978 GCTTGTCGTGCCCGGTCT 62.682 66.667 0.00 0.00 33.95 3.85
973 1000 0.654472 GAACAGTTGCACGCTTGTCG 60.654 55.000 0.00 0.00 45.38 4.35
974 1001 0.657840 AGAACAGTTGCACGCTTGTC 59.342 50.000 0.00 0.00 0.00 3.18
975 1002 0.657840 GAGAACAGTTGCACGCTTGT 59.342 50.000 0.00 0.00 0.00 3.16
976 1003 0.657312 TGAGAACAGTTGCACGCTTG 59.343 50.000 0.00 0.00 0.00 4.01
977 1004 0.940126 CTGAGAACAGTTGCACGCTT 59.060 50.000 0.00 0.00 39.11 4.68
978 1005 2.609825 CTGAGAACAGTTGCACGCT 58.390 52.632 0.00 0.00 39.11 5.07
987 1014 0.389166 GCTCCGGTGACTGAGAACAG 60.389 60.000 7.92 0.00 43.69 3.16
988 1015 0.827925 AGCTCCGGTGACTGAGAACA 60.828 55.000 7.92 0.00 43.69 3.18
989 1016 0.389166 CAGCTCCGGTGACTGAGAAC 60.389 60.000 17.55 0.00 43.69 3.01
990 1017 1.967535 CAGCTCCGGTGACTGAGAA 59.032 57.895 17.55 0.00 43.69 2.87
991 1018 2.640302 GCAGCTCCGGTGACTGAGA 61.640 63.158 23.24 0.00 43.69 3.27
992 1019 2.125753 GCAGCTCCGGTGACTGAG 60.126 66.667 23.24 6.67 43.80 3.35
993 1020 2.917227 TGCAGCTCCGGTGACTGA 60.917 61.111 23.24 11.32 33.10 3.41
994 1021 2.433838 CTGCAGCTCCGGTGACTG 60.434 66.667 17.91 17.91 32.22 3.51
995 1022 3.699894 CCTGCAGCTCCGGTGACT 61.700 66.667 8.66 1.06 32.22 3.41
996 1023 3.941657 GACCTGCAGCTCCGGTGAC 62.942 68.421 8.66 0.00 32.22 3.67
997 1024 3.695606 GACCTGCAGCTCCGGTGA 61.696 66.667 8.66 0.00 32.22 4.02
998 1025 4.767255 GGACCTGCAGCTCCGGTG 62.767 72.222 12.30 0.00 0.00 4.94
1000 1027 4.463879 CTGGACCTGCAGCTCCGG 62.464 72.222 20.15 20.15 0.00 5.14
1002 1029 3.341202 ATGCTGGACCTGCAGCTCC 62.341 63.158 27.27 19.59 44.19 4.70
1003 1030 2.113433 CATGCTGGACCTGCAGCTC 61.113 63.158 27.27 3.92 44.19 4.09
1004 1031 2.045242 CATGCTGGACCTGCAGCT 60.045 61.111 27.27 12.17 44.19 4.24
1005 1032 3.823330 GCATGCTGGACCTGCAGC 61.823 66.667 27.27 24.42 41.22 5.25
1006 1033 3.506096 CGCATGCTGGACCTGCAG 61.506 66.667 27.27 20.11 41.22 4.41
1007 1034 4.334118 ACGCATGCTGGACCTGCA 62.334 61.111 26.04 26.04 42.03 4.41
1008 1035 3.807538 CACGCATGCTGGACCTGC 61.808 66.667 17.13 16.03 0.00 4.85
1009 1036 2.359107 ACACGCATGCTGGACCTG 60.359 61.111 17.13 6.27 0.00 4.00
1010 1037 2.359107 CACACGCATGCTGGACCT 60.359 61.111 17.13 0.00 0.00 3.85
1011 1038 2.669569 ACACACGCATGCTGGACC 60.670 61.111 17.13 0.00 0.00 4.46
1012 1039 2.557805 CACACACGCATGCTGGAC 59.442 61.111 17.13 0.00 0.00 4.02
1013 1040 2.669229 CCACACACGCATGCTGGA 60.669 61.111 17.13 0.00 0.00 3.86
1014 1041 3.740397 CCCACACACGCATGCTGG 61.740 66.667 17.13 15.59 0.00 4.85
1015 1042 4.409218 GCCCACACACGCATGCTG 62.409 66.667 17.13 14.95 0.00 4.41
1032 1059 4.697756 ACCATCACGCCCACACGG 62.698 66.667 0.00 0.00 37.37 4.94
1033 1060 3.422303 CACCATCACGCCCACACG 61.422 66.667 0.00 0.00 39.50 4.49
1034 1061 3.737172 GCACCATCACGCCCACAC 61.737 66.667 0.00 0.00 0.00 3.82
1035 1062 4.262089 TGCACCATCACGCCCACA 62.262 61.111 0.00 0.00 0.00 4.17
1036 1063 3.434319 CTGCACCATCACGCCCAC 61.434 66.667 0.00 0.00 0.00 4.61
1037 1064 4.720902 CCTGCACCATCACGCCCA 62.721 66.667 0.00 0.00 0.00 5.36
1038 1065 4.408821 TCCTGCACCATCACGCCC 62.409 66.667 0.00 0.00 0.00 6.13
1039 1066 3.127533 GTCCTGCACCATCACGCC 61.128 66.667 0.00 0.00 0.00 5.68
1040 1067 3.490759 CGTCCTGCACCATCACGC 61.491 66.667 0.00 0.00 0.00 5.34
1041 1068 2.048222 ACGTCCTGCACCATCACG 60.048 61.111 0.00 0.00 36.54 4.35
1042 1069 1.005037 TGACGTCCTGCACCATCAC 60.005 57.895 14.12 0.00 0.00 3.06
1043 1070 1.005037 GTGACGTCCTGCACCATCA 60.005 57.895 14.12 0.00 0.00 3.07
1044 1071 1.005037 TGTGACGTCCTGCACCATC 60.005 57.895 14.12 0.00 34.19 3.51
1045 1072 1.301716 GTGTGACGTCCTGCACCAT 60.302 57.895 14.12 0.00 34.19 3.55
1046 1073 2.108157 GTGTGACGTCCTGCACCA 59.892 61.111 14.12 0.00 34.19 4.17
1047 1074 3.036084 CGTGTGACGTCCTGCACC 61.036 66.667 21.18 9.94 36.74 5.01
1058 1085 2.946990 TGTCTGTCTCACTTACGTGTGA 59.053 45.455 8.29 8.29 43.72 3.58
1059 1086 3.349488 TGTCTGTCTCACTTACGTGTG 57.651 47.619 0.00 0.00 41.89 3.82
1060 1087 4.097437 TCTTTGTCTGTCTCACTTACGTGT 59.903 41.667 0.00 0.00 41.89 4.49
1061 1088 4.607955 TCTTTGTCTGTCTCACTTACGTG 58.392 43.478 0.00 0.00 42.59 4.49
1062 1089 4.793353 GCTCTTTGTCTGTCTCACTTACGT 60.793 45.833 0.00 0.00 0.00 3.57
1063 1090 3.670991 GCTCTTTGTCTGTCTCACTTACG 59.329 47.826 0.00 0.00 0.00 3.18
1064 1091 4.621991 TGCTCTTTGTCTGTCTCACTTAC 58.378 43.478 0.00 0.00 0.00 2.34
1065 1092 4.584743 TCTGCTCTTTGTCTGTCTCACTTA 59.415 41.667 0.00 0.00 0.00 2.24
1066 1093 3.386078 TCTGCTCTTTGTCTGTCTCACTT 59.614 43.478 0.00 0.00 0.00 3.16
1067 1094 2.961741 TCTGCTCTTTGTCTGTCTCACT 59.038 45.455 0.00 0.00 0.00 3.41
1068 1095 3.377346 TCTGCTCTTTGTCTGTCTCAC 57.623 47.619 0.00 0.00 0.00 3.51
1069 1096 4.406648 TTTCTGCTCTTTGTCTGTCTCA 57.593 40.909 0.00 0.00 0.00 3.27
1070 1097 4.993584 TGATTTCTGCTCTTTGTCTGTCTC 59.006 41.667 0.00 0.00 0.00 3.36
1071 1098 4.965814 TGATTTCTGCTCTTTGTCTGTCT 58.034 39.130 0.00 0.00 0.00 3.41
1072 1099 5.679734 TTGATTTCTGCTCTTTGTCTGTC 57.320 39.130 0.00 0.00 0.00 3.51
1073 1100 5.591877 ACTTTGATTTCTGCTCTTTGTCTGT 59.408 36.000 0.00 0.00 0.00 3.41
1074 1101 5.913514 CACTTTGATTTCTGCTCTTTGTCTG 59.086 40.000 0.00 0.00 0.00 3.51
1075 1102 5.824624 TCACTTTGATTTCTGCTCTTTGTCT 59.175 36.000 0.00 0.00 0.00 3.41
1076 1103 6.064846 TCACTTTGATTTCTGCTCTTTGTC 57.935 37.500 0.00 0.00 0.00 3.18
1077 1104 6.455360 TTCACTTTGATTTCTGCTCTTTGT 57.545 33.333 0.00 0.00 0.00 2.83
1078 1105 7.760131 TTTTCACTTTGATTTCTGCTCTTTG 57.240 32.000 0.00 0.00 0.00 2.77
1101 1128 3.706086 GCCCACCACATCTATCCATTTTT 59.294 43.478 0.00 0.00 0.00 1.94
1102 1129 3.299503 GCCCACCACATCTATCCATTTT 58.700 45.455 0.00 0.00 0.00 1.82
1103 1130 2.424812 GGCCCACCACATCTATCCATTT 60.425 50.000 0.00 0.00 35.26 2.32
1104 1131 1.145738 GGCCCACCACATCTATCCATT 59.854 52.381 0.00 0.00 35.26 3.16
1105 1132 0.773644 GGCCCACCACATCTATCCAT 59.226 55.000 0.00 0.00 35.26 3.41
1106 1133 0.623031 TGGCCCACCACATCTATCCA 60.623 55.000 0.00 0.00 42.67 3.41
1107 1134 2.230664 TGGCCCACCACATCTATCC 58.769 57.895 0.00 0.00 42.67 2.59
1116 1143 0.689080 AACAAATGTGTGGCCCACCA 60.689 50.000 12.25 9.44 46.51 4.17
1117 1144 0.249826 CAACAAATGTGTGGCCCACC 60.250 55.000 12.25 3.29 43.85 4.61
1118 1145 0.249826 CCAACAAATGTGTGGCCCAC 60.250 55.000 7.01 7.01 44.78 4.61
1119 1146 0.689080 ACCAACAAATGTGTGGCCCA 60.689 50.000 0.00 0.00 38.27 5.36
1120 1147 0.467804 AACCAACAAATGTGTGGCCC 59.532 50.000 0.00 0.00 38.27 5.80
1121 1148 1.540146 GGAACCAACAAATGTGTGGCC 60.540 52.381 0.00 0.00 38.27 5.36
1122 1149 1.137872 TGGAACCAACAAATGTGTGGC 59.862 47.619 11.95 0.00 38.27 5.01
1123 1150 2.797792 CGTGGAACCAACAAATGTGTGG 60.798 50.000 10.99 10.99 38.27 4.17
1124 1151 2.458951 CGTGGAACCAACAAATGTGTG 58.541 47.619 0.00 0.00 38.27 3.82
1125 1152 1.202359 GCGTGGAACCAACAAATGTGT 60.202 47.619 0.00 0.00 40.75 3.72
1126 1153 1.486439 GCGTGGAACCAACAAATGTG 58.514 50.000 0.00 0.00 0.00 3.21
1127 1154 0.387565 GGCGTGGAACCAACAAATGT 59.612 50.000 0.00 0.00 0.00 2.71
1128 1155 0.387202 TGGCGTGGAACCAACAAATG 59.613 50.000 0.00 0.00 33.12 2.32
1129 1156 0.387565 GTGGCGTGGAACCAACAAAT 59.612 50.000 0.00 0.00 39.39 2.32
1130 1157 1.810532 GTGGCGTGGAACCAACAAA 59.189 52.632 0.00 0.00 39.39 2.83
1131 1158 2.473760 CGTGGCGTGGAACCAACAA 61.474 57.895 0.00 0.00 39.39 2.83
1132 1159 2.897846 CGTGGCGTGGAACCAACA 60.898 61.111 0.00 0.00 39.39 3.33
1133 1160 2.888998 GACGTGGCGTGGAACCAAC 61.889 63.158 0.00 0.00 41.37 3.77
1134 1161 2.589442 GACGTGGCGTGGAACCAA 60.589 61.111 0.00 0.00 41.37 3.67
1135 1162 4.953868 CGACGTGGCGTGGAACCA 62.954 66.667 0.00 0.00 41.37 3.67
1136 1163 4.651008 TCGACGTGGCGTGGAACC 62.651 66.667 0.00 0.00 41.11 3.62
1137 1164 3.400590 GTCGACGTGGCGTGGAAC 61.401 66.667 0.00 0.70 44.94 3.62
1138 1165 2.902759 TTTGTCGACGTGGCGTGGAA 62.903 55.000 11.62 0.00 44.94 3.53
1139 1166 2.902759 TTTTGTCGACGTGGCGTGGA 62.903 55.000 11.62 0.08 41.37 4.02
1140 1167 2.037913 TTTTTGTCGACGTGGCGTGG 62.038 55.000 11.62 0.00 41.37 4.94
1141 1168 1.348938 TTTTTGTCGACGTGGCGTG 59.651 52.632 11.62 0.00 41.37 5.34
1142 1169 3.797008 TTTTTGTCGACGTGGCGT 58.203 50.000 11.62 0.00 45.10 5.68
1157 1184 3.018423 AGTCCTGCTCCAAGTGTTTTT 57.982 42.857 0.00 0.00 0.00 1.94
1158 1185 2.736670 AGTCCTGCTCCAAGTGTTTT 57.263 45.000 0.00 0.00 0.00 2.43
1159 1186 3.857157 TTAGTCCTGCTCCAAGTGTTT 57.143 42.857 0.00 0.00 0.00 2.83
1160 1187 3.136626 AGTTTAGTCCTGCTCCAAGTGTT 59.863 43.478 0.00 0.00 0.00 3.32
1161 1188 2.706190 AGTTTAGTCCTGCTCCAAGTGT 59.294 45.455 0.00 0.00 0.00 3.55
1162 1189 3.409026 AGTTTAGTCCTGCTCCAAGTG 57.591 47.619 0.00 0.00 0.00 3.16
1163 1190 5.338463 GGATAAGTTTAGTCCTGCTCCAAGT 60.338 44.000 0.00 0.00 0.00 3.16
1164 1191 5.119694 GGATAAGTTTAGTCCTGCTCCAAG 58.880 45.833 0.00 0.00 0.00 3.61
1165 1192 4.382685 CGGATAAGTTTAGTCCTGCTCCAA 60.383 45.833 0.00 0.00 0.00 3.53
1166 1193 3.132289 CGGATAAGTTTAGTCCTGCTCCA 59.868 47.826 0.00 0.00 0.00 3.86
1167 1194 3.492829 CCGGATAAGTTTAGTCCTGCTCC 60.493 52.174 0.00 0.00 0.00 4.70
1168 1195 3.132467 ACCGGATAAGTTTAGTCCTGCTC 59.868 47.826 9.46 0.00 0.00 4.26
1169 1196 3.105283 ACCGGATAAGTTTAGTCCTGCT 58.895 45.455 9.46 0.00 0.00 4.24
1170 1197 3.538634 ACCGGATAAGTTTAGTCCTGC 57.461 47.619 9.46 0.00 0.00 4.85
1171 1198 9.603921 TTTTAATACCGGATAAGTTTAGTCCTG 57.396 33.333 9.46 0.00 0.00 3.86
1172 1199 9.828039 CTTTTAATACCGGATAAGTTTAGTCCT 57.172 33.333 9.46 0.00 0.00 3.85
1173 1200 9.605275 ACTTTTAATACCGGATAAGTTTAGTCC 57.395 33.333 9.46 0.00 0.00 3.85
1185 1212 9.139174 CGTAGTCTTTTAACTTTTAATACCGGA 57.861 33.333 9.46 0.00 0.00 5.14
1186 1213 8.382875 CCGTAGTCTTTTAACTTTTAATACCGG 58.617 37.037 0.00 0.00 0.00 5.28
1187 1214 8.925700 ACCGTAGTCTTTTAACTTTTAATACCG 58.074 33.333 0.00 0.00 0.00 4.02
1192 1219 9.288124 GCAAAACCGTAGTCTTTTAACTTTTAA 57.712 29.630 0.00 0.00 0.00 1.52
1193 1220 8.676401 AGCAAAACCGTAGTCTTTTAACTTTTA 58.324 29.630 0.00 0.00 0.00 1.52
1194 1221 7.541162 AGCAAAACCGTAGTCTTTTAACTTTT 58.459 30.769 0.00 0.00 0.00 2.27
1195 1222 7.092137 AGCAAAACCGTAGTCTTTTAACTTT 57.908 32.000 0.00 0.00 0.00 2.66
1196 1223 6.688637 AGCAAAACCGTAGTCTTTTAACTT 57.311 33.333 0.00 0.00 0.00 2.66
1197 1224 7.974482 ATAGCAAAACCGTAGTCTTTTAACT 57.026 32.000 0.00 0.00 0.00 2.24
1198 1225 9.454585 AAAATAGCAAAACCGTAGTCTTTTAAC 57.545 29.630 0.00 0.00 0.00 2.01
1207 1234 6.021596 CAGCTGTAAAATAGCAAAACCGTAG 58.978 40.000 5.25 0.00 43.53 3.51
1290 1317 1.380403 CCGGCAACAAGACCAACACA 61.380 55.000 0.00 0.00 0.00 3.72
1814 2418 4.202161 CGCCTACAGGAACATCTACAGATT 60.202 45.833 0.00 0.00 37.39 2.40
2763 5184 8.698973 TGGAAAATCCACTAAAATTACACTGA 57.301 30.769 0.00 0.00 42.67 3.41
2837 6244 7.023171 ACACTGGAATTAAATGGGTACACTA 57.977 36.000 0.00 0.00 0.00 2.74
3321 7327 8.440059 CGCTGAAACTACAATCAAATTACACTA 58.560 33.333 0.00 0.00 0.00 2.74
3563 7612 5.486526 GAACATCCTGATGAGACACTTTCT 58.513 41.667 13.81 0.00 41.20 2.52
4101 8226 5.183904 GGAGGACAGAAAACATTACATGCTT 59.816 40.000 0.00 0.00 0.00 3.91
4349 8900 5.854010 AATCAGTAGATCGTTTCTGCCTA 57.146 39.130 1.64 0.00 37.77 3.93
4542 9093 5.298777 GGAATTCAGATGAAGGGACATCAAG 59.701 44.000 7.93 0.00 46.11 3.02
5874 10542 1.479709 ATAGAGACAGACTTGGCGCT 58.520 50.000 7.64 0.00 45.21 5.92
5999 10685 0.948678 CCCCAACACTAACAACACCG 59.051 55.000 0.00 0.00 0.00 4.94
6698 11456 0.602638 ATGGAAACGCTGCGACAAGA 60.603 50.000 30.47 9.57 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.