Multiple sequence alignment - TraesCS5B01G373600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G373600 chr5B 100.000 5213 0 0 3681 8893 551336058 551330846 0.000000e+00 9627.0
1 TraesCS5B01G373600 chr5B 100.000 2498 0 0 883 3380 551338856 551336359 0.000000e+00 4614.0
2 TraesCS5B01G373600 chr5B 100.000 623 0 0 1 623 551339738 551339116 0.000000e+00 1151.0
3 TraesCS5B01G373600 chr5B 90.580 138 13 0 4496 4633 478679182 478679045 5.480000e-42 183.0
4 TraesCS5B01G373600 chr5B 92.188 128 10 0 4500 4627 302848301 302848174 1.970000e-41 182.0
5 TraesCS5B01G373600 chr5B 92.188 128 9 1 4500 4627 695950976 695950850 7.090000e-41 180.0
6 TraesCS5B01G373600 chr5B 82.716 81 14 0 1003 1083 24014105 24014025 1.240000e-08 73.1
7 TraesCS5B01G373600 chr5B 87.143 70 2 3 8728 8791 57488488 57488420 1.240000e-08 73.1
8 TraesCS5B01G373600 chr5A 91.152 2543 118 43 903 3380 570331636 570329136 0.000000e+00 3350.0
9 TraesCS5B01G373600 chr5A 90.945 2264 131 27 6670 8893 570325917 570323688 0.000000e+00 2977.0
10 TraesCS5B01G373600 chr5A 93.178 1158 45 10 4719 5846 570328063 570326910 0.000000e+00 1670.0
11 TraesCS5B01G373600 chr5A 96.261 829 25 1 3682 4504 570329043 570328215 0.000000e+00 1354.0
12 TraesCS5B01G373600 chr5A 88.855 332 29 4 14 338 570340784 570340454 1.390000e-107 401.0
13 TraesCS5B01G373600 chr5A 91.844 282 16 3 5851 6126 570326671 570326391 3.890000e-103 387.0
14 TraesCS5B01G373600 chr5A 90.157 254 16 7 6192 6444 570326373 570326128 1.110000e-83 322.0
15 TraesCS5B01G373600 chr5A 87.153 288 17 8 336 621 570332017 570331748 8.670000e-80 309.0
16 TraesCS5B01G373600 chr5A 88.701 177 9 4 6497 6671 570326132 570325965 1.170000e-48 206.0
17 TraesCS5B01G373600 chr5D 91.082 2052 102 32 1299 3321 451136287 451134288 0.000000e+00 2700.0
18 TraesCS5B01G373600 chr5D 91.654 1977 74 27 4719 6671 451132773 451130864 0.000000e+00 2652.0
19 TraesCS5B01G373600 chr5D 93.507 1648 74 11 6670 8295 451130814 451129178 0.000000e+00 2420.0
20 TraesCS5B01G373600 chr5D 91.956 634 31 8 1 616 451137788 451137157 0.000000e+00 870.0
21 TraesCS5B01G373600 chr5D 96.734 398 7 2 3682 4073 451134059 451133662 0.000000e+00 658.0
22 TraesCS5B01G373600 chr5D 91.648 455 26 4 4060 4504 451133619 451133167 3.530000e-173 619.0
23 TraesCS5B01G373600 chr5D 95.894 341 12 2 903 1241 451137072 451136732 1.300000e-152 551.0
24 TraesCS5B01G373600 chr5D 93.082 159 11 0 8735 8893 451129179 451129021 5.370000e-57 233.0
25 TraesCS5B01G373600 chr5D 91.852 135 10 1 4499 4633 439810818 439810685 4.240000e-43 187.0
26 TraesCS5B01G373600 chr2B 93.284 134 9 0 4501 4634 65089831 65089964 1.960000e-46 198.0
27 TraesCS5B01G373600 chr2B 89.655 58 5 1 6194 6250 13365452 13365395 1.240000e-08 73.1
28 TraesCS5B01G373600 chr2B 97.500 40 1 0 8748 8787 134045495 134045456 1.600000e-07 69.4
29 TraesCS5B01G373600 chr4D 90.580 138 12 1 4501 4638 614527 614663 1.970000e-41 182.0
30 TraesCS5B01G373600 chrUn 91.538 130 11 0 4498 4627 98153917 98153788 7.090000e-41 180.0
31 TraesCS5B01G373600 chr6D 89.855 138 13 1 4498 4634 126108391 126108254 9.180000e-40 176.0
32 TraesCS5B01G373600 chr2A 90.370 135 12 1 4493 4627 144677190 144677057 9.180000e-40 176.0
33 TraesCS5B01G373600 chr7B 94.545 55 2 1 6194 6247 696919547 696919601 5.720000e-12 84.2
34 TraesCS5B01G373600 chr7B 92.727 55 3 1 6194 6247 696918493 696918547 2.660000e-10 78.7
35 TraesCS5B01G373600 chr4A 92.727 55 3 1 6194 6247 743337788 743337734 2.660000e-10 78.7
36 TraesCS5B01G373600 chr1A 92.453 53 3 1 8748 8799 581594189 581594137 3.440000e-09 75.0
37 TraesCS5B01G373600 chr7A 89.655 58 4 2 6192 6248 115016672 115016728 1.240000e-08 73.1
38 TraesCS5B01G373600 chr7D 90.566 53 4 1 8748 8799 573982323 573982271 1.600000e-07 69.4
39 TraesCS5B01G373600 chr2D 97.500 40 1 0 8748 8787 83967081 83967042 1.600000e-07 69.4
40 TraesCS5B01G373600 chr2D 97.500 40 1 0 8748 8787 544885003 544885042 1.600000e-07 69.4
41 TraesCS5B01G373600 chr3D 93.182 44 3 0 8748 8791 45243225 45243182 2.070000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G373600 chr5B 551330846 551339738 8892 True 5130.666667 9627 100.000000 1 8893 3 chr5B.!!$R6 8892
1 TraesCS5B01G373600 chr5A 570323688 570332017 8329 True 1321.875000 3350 91.173875 336 8893 8 chr5A.!!$R2 8557
2 TraesCS5B01G373600 chr5D 451129021 451137788 8767 True 1337.875000 2700 93.194625 1 8893 8 chr5D.!!$R2 8892

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 281 0.249155 ACCAACATCGTTGTCGTCGT 60.249 50.000 0.0 0.0 34.06 4.34 F
1247 1281 0.250124 TCCTCTTTTCTTTCGCCGCA 60.250 50.000 0.0 0.0 0.00 5.69 F
1589 2016 0.597637 CGACACGTATCCCTCATGGC 60.598 60.000 0.0 0.0 0.00 4.40 F
2101 2532 0.883833 AGTAGCACTGCAATGTTGGC 59.116 50.000 3.3 0.0 0.00 4.52 F
2709 3152 0.984230 TTGCGACCTCAGATTTCCCT 59.016 50.000 0.0 0.0 0.00 4.20 F
4452 5097 1.003118 TCGGTGAACTTGAGGGGATTG 59.997 52.381 0.0 0.0 0.00 2.67 F
5029 5854 1.058404 GGCACGTCTTTAGTGTCGTC 58.942 55.000 0.0 0.0 41.36 4.20 F
6715 7877 1.673920 GCTTTGTCGTTCAGGACCAAA 59.326 47.619 0.0 0.0 36.07 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1573 1999 0.034059 GAGGCCATGAGGGATACGTG 59.966 60.000 5.01 0.00 40.01 4.49 R
2391 2826 0.040603 GAGACAAAGCACAGCTGCAC 60.041 55.000 15.27 5.98 46.97 4.57 R
2396 2831 0.040958 CAACCGAGACAAAGCACAGC 60.041 55.000 0.00 0.00 0.00 4.40 R
3788 4367 0.178964 CCTTCTTTTCTGGGGGCACA 60.179 55.000 0.00 0.00 0.00 4.57 R
4609 5254 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28 R
6041 7144 0.178068 CCAGCACCACCGTAAGCTAT 59.822 55.000 0.00 0.00 35.19 2.97 R
6856 8038 0.607112 TCTTCTCAGGAGCTGCTGTG 59.393 55.000 31.17 28.44 0.00 3.66 R
8554 9765 1.271871 TGCCCTCCATGTTTGTACCTG 60.272 52.381 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 3.885484 ATCACAAAGTTGTCAAGAGCG 57.115 42.857 0.00 0.00 39.91 5.03
73 74 1.939934 TCACAAAGTTGTCAAGAGCGG 59.060 47.619 0.00 0.00 39.91 5.52
88 89 4.686839 AGAGCGGCAAAATAAAGAAGAC 57.313 40.909 1.45 0.00 0.00 3.01
92 93 3.914364 GCGGCAAAATAAAGAAGACTGTG 59.086 43.478 0.00 0.00 0.00 3.66
114 115 5.125900 GTGTCTAGAGAGAGGAAGGTAAACC 59.874 48.000 0.00 0.00 30.20 3.27
192 197 1.795872 CACATAAGAAACGTGTCCGCA 59.204 47.619 0.95 0.00 37.70 5.69
195 200 3.120338 ACATAAGAAACGTGTCCGCAATG 60.120 43.478 0.95 4.14 37.70 2.82
205 210 3.234386 GTGTCCGCAATGTAAGAAAAGC 58.766 45.455 0.00 0.00 0.00 3.51
244 249 3.897239 AGACAATGACACCTCCAACAAA 58.103 40.909 0.00 0.00 0.00 2.83
250 260 4.927267 TGACACCTCCAACAAAGGATAT 57.073 40.909 0.00 0.00 36.99 1.63
255 265 3.591527 ACCTCCAACAAAGGATATGACCA 59.408 43.478 0.00 0.00 36.99 4.02
268 278 2.163818 ATGACCAACATCGTTGTCGT 57.836 45.000 0.00 0.00 34.06 4.34
271 281 0.249155 ACCAACATCGTTGTCGTCGT 60.249 50.000 0.00 0.00 34.06 4.34
279 289 0.317603 CGTTGTCGTCGTCTCCAACT 60.318 55.000 13.52 0.00 36.04 3.16
286 296 1.699343 GTCGTCTCCAACTAGTGTGC 58.301 55.000 0.00 0.00 0.00 4.57
344 354 1.887854 TGACCTTTACCATGTCGTCGA 59.112 47.619 0.00 0.00 0.00 4.20
368 378 4.822036 TTAACCGGTGAAGATTTGTGTG 57.178 40.909 8.52 0.00 0.00 3.82
406 416 6.628919 GGTACGAAATTTATGTAGCCCATT 57.371 37.500 15.98 0.00 34.86 3.16
427 437 1.198094 TTCCATGGGCACGAAGAGGA 61.198 55.000 13.02 0.00 0.00 3.71
443 454 5.938125 CGAAGAGGAGTTCCCATTCTAAAAA 59.062 40.000 9.82 0.00 37.41 1.94
480 499 8.902806 CCAATACTAGTGATATTTTCTTGCCAA 58.097 33.333 5.39 0.00 0.00 4.52
522 541 2.445427 TGCATTTCCACCGTCATCAAT 58.555 42.857 0.00 0.00 0.00 2.57
527 546 2.849294 TCCACCGTCATCAATTGTCA 57.151 45.000 5.13 0.00 0.00 3.58
593 613 4.711949 CCCGCTCCTGCTTGCACT 62.712 66.667 0.00 0.00 36.97 4.40
621 641 2.769209 AGCTCCTCTCTCTCTCTCTCT 58.231 52.381 0.00 0.00 0.00 3.10
1126 1157 3.490761 GCAGATCTACAAGCAGGAGAGAC 60.491 52.174 0.00 0.00 0.00 3.36
1133 1164 4.803426 GCAGGAGAGACGCGTGGG 62.803 72.222 20.70 0.00 0.00 4.61
1135 1166 2.043852 AGGAGAGACGCGTGGGAT 60.044 61.111 20.70 0.00 0.00 3.85
1141 1175 1.135083 AGAGACGCGTGGGATTAACTG 60.135 52.381 20.70 0.00 0.00 3.16
1145 1179 0.442310 CGCGTGGGATTAACTGTGTG 59.558 55.000 0.00 0.00 0.00 3.82
1172 1206 2.534231 GCGAGTTTCTTGCTGGATTC 57.466 50.000 2.15 0.00 37.84 2.52
1209 1243 5.359756 AGATTTGTTGGAAAAGGCTTCAAC 58.640 37.500 18.33 18.33 39.68 3.18
1243 1277 5.519722 TGATTTGTTCCTCTTTTCTTTCGC 58.480 37.500 0.00 0.00 0.00 4.70
1244 1278 3.982576 TTGTTCCTCTTTTCTTTCGCC 57.017 42.857 0.00 0.00 0.00 5.54
1245 1279 1.871039 TGTTCCTCTTTTCTTTCGCCG 59.129 47.619 0.00 0.00 0.00 6.46
1246 1280 0.872388 TTCCTCTTTTCTTTCGCCGC 59.128 50.000 0.00 0.00 0.00 6.53
1247 1281 0.250124 TCCTCTTTTCTTTCGCCGCA 60.250 50.000 0.00 0.00 0.00 5.69
1296 1330 4.749310 CGCCCGCAGCTCAAGAGT 62.749 66.667 0.00 0.00 40.39 3.24
1297 1331 2.359230 GCCCGCAGCTCAAGAGTT 60.359 61.111 0.00 0.00 38.99 3.01
1353 1774 9.788960 AATTCGTTAGGATTTTGAAAATAGAGC 57.211 29.630 2.71 0.00 0.00 4.09
1391 1812 4.442375 AATCGTCAGAACAGATCGAACT 57.558 40.909 0.00 0.00 34.38 3.01
1424 1845 5.522824 TCTTGCAATCTTCTCATCGAATCTG 59.477 40.000 0.00 0.00 0.00 2.90
1432 1853 5.594317 TCTTCTCATCGAATCTGTGGACATA 59.406 40.000 0.00 0.00 0.00 2.29
1481 1906 6.000219 GTCGAGTTAGTCCACCCTGTATATA 59.000 44.000 0.00 0.00 0.00 0.86
1482 1907 6.658391 GTCGAGTTAGTCCACCCTGTATATAT 59.342 42.308 0.00 0.00 0.00 0.86
1483 1908 7.826252 GTCGAGTTAGTCCACCCTGTATATATA 59.174 40.741 0.00 0.00 0.00 0.86
1484 1909 8.554870 TCGAGTTAGTCCACCCTGTATATATAT 58.445 37.037 0.00 0.00 0.00 0.86
1510 1935 4.156556 GTGTGTGTGATTTGATATGGCTGT 59.843 41.667 0.00 0.00 0.00 4.40
1513 1938 4.766373 TGTGTGATTTGATATGGCTGTGTT 59.234 37.500 0.00 0.00 0.00 3.32
1573 1999 8.797266 ATTGTTGTTTCTTAATTTTCTCCGAC 57.203 30.769 0.00 0.00 0.00 4.79
1589 2016 0.597637 CGACACGTATCCCTCATGGC 60.598 60.000 0.00 0.00 0.00 4.40
1655 2082 6.049790 GGATACTGGGAAGATTAGTCAACAC 58.950 44.000 0.00 0.00 0.00 3.32
1658 2085 5.248640 ACTGGGAAGATTAGTCAACACATG 58.751 41.667 0.00 0.00 0.00 3.21
1659 2086 4.588899 TGGGAAGATTAGTCAACACATGG 58.411 43.478 0.00 0.00 0.00 3.66
1660 2087 3.378427 GGGAAGATTAGTCAACACATGGC 59.622 47.826 0.00 0.00 0.00 4.40
1661 2088 3.378427 GGAAGATTAGTCAACACATGGCC 59.622 47.826 0.00 0.00 32.58 5.36
1685 2112 3.796178 GCTAGCTTTCATTGTCTCTCGAG 59.204 47.826 7.70 5.93 0.00 4.04
1714 2141 5.889853 TGGATTTCTTGCTAGCTTTCATGAT 59.110 36.000 17.23 1.54 0.00 2.45
1726 2156 5.434408 AGCTTTCATGATCTATTGTGCTGA 58.566 37.500 0.00 0.00 0.00 4.26
1881 2311 4.735985 TGCGCGTATACTTTTCTTCTACA 58.264 39.130 8.43 0.00 0.00 2.74
1969 2399 8.020819 TCTGTTATTTTAAATTCGCTCAACCAG 58.979 33.333 0.00 0.00 0.00 4.00
1971 2401 3.569250 TTTAAATTCGCTCAACCAGCC 57.431 42.857 0.00 0.00 46.74 4.85
1977 2407 2.693762 CGCTCAACCAGCCCATGTG 61.694 63.158 0.00 0.00 46.74 3.21
1978 2408 2.998279 GCTCAACCAGCCCATGTGC 61.998 63.158 0.00 0.00 43.17 4.57
2006 2436 4.142271 CCTCACCTTAAACACAAAGCACAA 60.142 41.667 0.00 0.00 0.00 3.33
2010 2440 6.876257 TCACCTTAAACACAAAGCACAAAAAT 59.124 30.769 0.00 0.00 0.00 1.82
2015 2445 4.199432 ACACAAAGCACAAAAATGACCA 57.801 36.364 0.00 0.00 0.00 4.02
2033 2464 9.912634 AAATGACCAGCGAAATTATATATTTGG 57.087 29.630 0.00 0.00 0.00 3.28
2056 2487 9.868277 TTGGGTCAATATAATTTGTAAAAGCTG 57.132 29.630 0.00 0.00 0.00 4.24
2101 2532 0.883833 AGTAGCACTGCAATGTTGGC 59.116 50.000 3.30 0.00 0.00 4.52
2154 2586 6.269077 TCTCAGTCTAATCAGTTGTTTGGGTA 59.731 38.462 0.00 0.00 0.00 3.69
2186 2618 6.228273 TCATCTGAATCAAGTCACGTTTTC 57.772 37.500 0.00 0.00 0.00 2.29
2201 2633 3.784202 ACGTTTTCCCCTGGGAGTATTAT 59.216 43.478 16.20 0.00 46.06 1.28
2203 2635 5.429435 ACGTTTTCCCCTGGGAGTATTATTA 59.571 40.000 16.20 0.00 46.06 0.98
2204 2636 5.761726 CGTTTTCCCCTGGGAGTATTATTAC 59.238 44.000 16.20 0.00 46.06 1.89
2205 2637 6.408891 CGTTTTCCCCTGGGAGTATTATTACT 60.409 42.308 16.20 0.00 46.06 2.24
2206 2638 7.351952 GTTTTCCCCTGGGAGTATTATTACTT 58.648 38.462 16.20 0.00 46.06 2.24
2207 2639 7.533923 TTTCCCCTGGGAGTATTATTACTTT 57.466 36.000 16.20 0.00 46.06 2.66
2208 2640 8.641498 TTTCCCCTGGGAGTATTATTACTTTA 57.359 34.615 16.20 0.00 46.06 1.85
2209 2641 7.622502 TCCCCTGGGAGTATTATTACTTTAC 57.377 40.000 16.20 0.00 38.81 2.01
2210 2642 6.268387 TCCCCTGGGAGTATTATTACTTTACG 59.732 42.308 16.20 0.00 38.81 3.18
2211 2643 5.930569 CCCTGGGAGTATTATTACTTTACGC 59.069 44.000 7.01 0.00 38.81 4.42
2212 2644 6.239515 CCCTGGGAGTATTATTACTTTACGCT 60.240 42.308 7.01 0.00 38.81 5.07
2213 2645 7.039504 CCCTGGGAGTATTATTACTTTACGCTA 60.040 40.741 7.01 0.00 38.81 4.26
2229 2661 4.336889 ACGCTAGCTAGAATTAATGCCA 57.663 40.909 25.15 0.00 0.00 4.92
2250 2682 1.621317 TCGCAACATCCAGACACCTTA 59.379 47.619 0.00 0.00 0.00 2.69
2355 2790 2.224402 GGGATGCTTCCTGTCCTCATAC 60.224 54.545 17.48 0.00 42.20 2.39
2391 2826 2.281276 TGCTCCTGTGCAGCAGTG 60.281 61.111 0.00 0.00 42.09 3.66
2392 2827 2.281345 GCTCCTGTGCAGCAGTGT 60.281 61.111 0.00 0.00 43.55 3.55
2393 2828 2.614446 GCTCCTGTGCAGCAGTGTG 61.614 63.158 0.00 8.13 43.55 3.82
2394 2829 2.592574 TCCTGTGCAGCAGTGTGC 60.593 61.111 0.00 9.81 43.55 4.57
2425 2860 2.151202 TGTCTCGGTTGATTTCCTTGC 58.849 47.619 0.00 0.00 0.00 4.01
2455 2892 5.422666 TCTGTCATGTTTACAAAGTGCTG 57.577 39.130 0.00 0.00 0.00 4.41
2495 2934 5.171476 GGAAGAGTTGATCAGATGTCGAAA 58.829 41.667 0.00 0.00 0.00 3.46
2504 2943 6.042777 TGATCAGATGTCGAAATGGAAGTAC 58.957 40.000 0.00 0.00 0.00 2.73
2616 3055 5.067674 TCACTCTCCATGTCCTTTTGTTTTG 59.932 40.000 0.00 0.00 0.00 2.44
2617 3056 4.342092 ACTCTCCATGTCCTTTTGTTTTGG 59.658 41.667 0.00 0.00 0.00 3.28
2705 3148 1.677217 GGAGCTTGCGACCTCAGATTT 60.677 52.381 0.00 0.00 0.00 2.17
2709 3152 0.984230 TTGCGACCTCAGATTTCCCT 59.016 50.000 0.00 0.00 0.00 4.20
2775 3218 7.822334 TCATTAGTGTGTTTGTACCTATTCCAG 59.178 37.037 0.00 0.00 0.00 3.86
2898 3348 4.501071 GACCTTGAAGTAATGCCGTCTTA 58.499 43.478 0.00 0.00 0.00 2.10
2908 3358 3.914426 ATGCCGTCTTATTGGTCTCTT 57.086 42.857 0.00 0.00 0.00 2.85
2967 3423 6.295802 CCACCCACCAAATCTGAATGTTAAAT 60.296 38.462 0.00 0.00 0.00 1.40
3028 3513 3.190535 TGTTGTCTTCGATCATCGTCTCA 59.809 43.478 7.00 0.35 41.35 3.27
3237 3733 5.209818 TCCTACAGTACAGTGTTTCTTGG 57.790 43.478 0.00 3.76 31.46 3.61
3338 3841 8.243426 GTGTGGCAATTTTAACTCATTATCAGA 58.757 33.333 0.00 0.00 0.00 3.27
3340 3843 9.807649 GTGGCAATTTTAACTCATTATCAGATT 57.192 29.630 0.00 0.00 0.00 2.40
3374 3947 3.470645 AAACGCCCTCAGGATGTATAC 57.529 47.619 0.00 0.00 37.40 1.47
3788 4367 9.656323 TTATACTAGTCATTCTTATGGGAGTGT 57.344 33.333 0.00 0.00 32.40 3.55
3828 4407 3.311966 GCTGTGAGGAATCAAACAAAGC 58.688 45.455 0.00 0.00 36.64 3.51
4077 4712 4.728860 AGAGGGAGAGAGAGAGAGAAATCT 59.271 45.833 0.00 0.00 0.00 2.40
4079 4714 6.389869 AGAGGGAGAGAGAGAGAGAAATCTTA 59.610 42.308 0.00 0.00 0.00 2.10
4081 4716 5.241728 GGGAGAGAGAGAGAGAAATCTTAGC 59.758 48.000 0.00 0.00 0.00 3.09
4084 4719 5.829924 AGAGAGAGAGAGAAATCTTAGCCAG 59.170 44.000 0.00 0.00 0.00 4.85
4093 4728 3.922171 AATCTTAGCCAGGTTCAGAGG 57.078 47.619 0.00 0.00 0.00 3.69
4130 4765 6.716173 TGGCTGTGTGCATATCAACATATATT 59.284 34.615 0.00 0.00 45.15 1.28
4146 4781 9.696917 CAACATATATTAGTGTGTAGATCTGCA 57.303 33.333 9.69 9.69 0.00 4.41
4167 4802 6.286758 TGCATCAGCCTTTTGAAAATGTTTA 58.713 32.000 0.00 0.00 41.13 2.01
4200 4835 5.376854 AGCATTTGTTACTTCATCCACAC 57.623 39.130 0.00 0.00 0.00 3.82
4310 4951 6.183360 GCTGCCCATATTCTTTACAGCTTTAA 60.183 38.462 0.00 0.00 44.25 1.52
4345 4986 2.560981 CCCAACAATTGTGTCCCCTTAC 59.439 50.000 12.82 0.00 36.80 2.34
4346 4987 2.227865 CCAACAATTGTGTCCCCTTACG 59.772 50.000 12.82 0.00 36.80 3.18
4452 5097 1.003118 TCGGTGAACTTGAGGGGATTG 59.997 52.381 0.00 0.00 0.00 2.67
4504 5149 5.487488 TCCCAGGTTGACATGAATAGTACTT 59.513 40.000 0.00 0.00 0.00 2.24
4505 5150 5.817816 CCCAGGTTGACATGAATAGTACTTC 59.182 44.000 0.00 0.00 0.00 3.01
4506 5151 5.817816 CCAGGTTGACATGAATAGTACTTCC 59.182 44.000 0.00 0.00 0.00 3.46
4507 5152 6.352222 CCAGGTTGACATGAATAGTACTTCCT 60.352 42.308 0.00 0.00 0.00 3.36
4508 5153 6.758886 CAGGTTGACATGAATAGTACTTCCTC 59.241 42.308 0.00 0.00 0.00 3.71
4509 5154 6.049790 GGTTGACATGAATAGTACTTCCTCC 58.950 44.000 0.00 0.00 0.00 4.30
4510 5155 5.515797 TGACATGAATAGTACTTCCTCCG 57.484 43.478 0.00 0.00 0.00 4.63
4511 5156 4.954202 TGACATGAATAGTACTTCCTCCGT 59.046 41.667 0.00 0.00 0.00 4.69
4512 5157 5.067413 TGACATGAATAGTACTTCCTCCGTC 59.933 44.000 0.00 3.12 0.00 4.79
4513 5158 4.341520 ACATGAATAGTACTTCCTCCGTCC 59.658 45.833 0.00 0.00 0.00 4.79
4514 5159 3.294214 TGAATAGTACTTCCTCCGTCCC 58.706 50.000 0.00 0.00 0.00 4.46
4519 5164 2.910977 AGTACTTCCTCCGTCCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
4520 5165 2.971901 ACTTCCTCCGTCCCAAAATT 57.028 45.000 0.00 0.00 0.00 1.82
4521 5166 2.791655 ACTTCCTCCGTCCCAAAATTC 58.208 47.619 0.00 0.00 0.00 2.17
4523 5168 3.181433 ACTTCCTCCGTCCCAAAATTCTT 60.181 43.478 0.00 0.00 0.00 2.52
4525 5170 2.373836 TCCTCCGTCCCAAAATTCTTGA 59.626 45.455 3.00 0.00 0.00 3.02
4526 5171 2.488153 CCTCCGTCCCAAAATTCTTGAC 59.512 50.000 3.00 0.00 0.00 3.18
4527 5172 3.412386 CTCCGTCCCAAAATTCTTGACT 58.588 45.455 3.00 0.00 0.00 3.41
4530 5175 5.378332 TCCGTCCCAAAATTCTTGACTTAA 58.622 37.500 3.00 0.00 0.00 1.85
4531 5176 5.828859 TCCGTCCCAAAATTCTTGACTTAAA 59.171 36.000 3.00 0.00 0.00 1.52
4533 5178 7.014808 TCCGTCCCAAAATTCTTGACTTAAATT 59.985 33.333 3.00 0.00 0.00 1.82
4534 5179 7.655732 CCGTCCCAAAATTCTTGACTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
4535 5180 9.685828 CGTCCCAAAATTCTTGACTTAAATTTA 57.314 29.630 0.00 0.00 32.84 1.40
4602 5247 9.109393 ACATCCATATGTACACACATTTAAGAC 57.891 33.333 0.00 0.00 44.66 3.01
4603 5248 9.108284 CATCCATATGTACACACATTTAAGACA 57.892 33.333 0.00 0.00 42.98 3.41
4604 5249 9.679661 ATCCATATGTACACACATTTAAGACAA 57.320 29.630 0.00 0.00 42.98 3.18
4605 5250 9.161629 TCCATATGTACACACATTTAAGACAAG 57.838 33.333 0.00 0.00 42.98 3.16
4606 5251 9.161629 CCATATGTACACACATTTAAGACAAGA 57.838 33.333 0.00 0.00 42.98 3.02
4613 5258 8.647143 ACACACATTTAAGACAAGAATTTTGG 57.353 30.769 5.68 0.00 0.00 3.28
4614 5259 7.710475 ACACACATTTAAGACAAGAATTTTGGG 59.290 33.333 5.68 0.00 0.00 4.12
4615 5260 7.925483 CACACATTTAAGACAAGAATTTTGGGA 59.075 33.333 5.68 0.00 0.00 4.37
4616 5261 7.926018 ACACATTTAAGACAAGAATTTTGGGAC 59.074 33.333 5.68 0.00 0.00 4.46
4617 5262 7.114811 CACATTTAAGACAAGAATTTTGGGACG 59.885 37.037 5.68 0.00 0.00 4.79
4618 5263 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
4620 5265 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
4621 5266 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
4622 5267 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
4633 5395 3.205056 TGGGACGGAGGGAGTACTAATAA 59.795 47.826 0.00 0.00 0.00 1.40
4652 5414 3.976468 AATTCATGAAATTTGCGCGTG 57.024 38.095 13.09 0.00 33.69 5.34
4692 5454 2.738314 ACGGTTGGTGTCGTTAATTAGC 59.262 45.455 0.00 0.00 36.04 3.09
4697 5459 3.592059 TGGTGTCGTTAATTAGCTCACC 58.408 45.455 23.23 23.23 42.56 4.02
4706 5468 7.871463 GTCGTTAATTAGCTCACCCTTATACAT 59.129 37.037 0.00 0.00 0.00 2.29
4713 5475 8.918202 TTAGCTCACCCTTATACATAAAATGG 57.082 34.615 0.00 0.00 33.60 3.16
4714 5476 6.911308 AGCTCACCCTTATACATAAAATGGT 58.089 36.000 0.00 0.00 33.60 3.55
4715 5477 8.041143 AGCTCACCCTTATACATAAAATGGTA 57.959 34.615 0.00 0.00 33.60 3.25
4716 5478 8.669571 AGCTCACCCTTATACATAAAATGGTAT 58.330 33.333 0.00 0.00 34.72 2.73
4717 5479 9.953565 GCTCACCCTTATACATAAAATGGTATA 57.046 33.333 0.00 0.00 32.72 1.47
4736 5561 6.314152 TGGTATACATTTCACATGTTACCGTG 59.686 38.462 12.26 4.67 37.85 4.94
4743 5568 8.447833 ACATTTCACATGTTACCGTGTAATTAG 58.552 33.333 0.00 0.40 38.79 1.73
4799 5624 3.786450 AGGGGGTAGAAAGAATGGTAAGG 59.214 47.826 0.00 0.00 0.00 2.69
4846 5671 4.688879 TGTAGTAGATGCCAAACGAAACTG 59.311 41.667 0.00 0.00 0.00 3.16
4869 5694 1.916181 AGCATGGCTTACCCTAACTGT 59.084 47.619 0.00 0.00 33.89 3.55
5015 5840 2.598589 CTCACATGGAAAAATGGCACG 58.401 47.619 0.00 0.00 31.46 5.34
5029 5854 1.058404 GGCACGTCTTTAGTGTCGTC 58.942 55.000 0.00 0.00 41.36 4.20
5074 5899 9.730420 GTTCTAGTTTTACTGATTTTGAGCAAA 57.270 29.630 0.00 0.00 0.00 3.68
5095 5920 6.676943 GCAAAAGTCTTGCACAGTTTGTACTA 60.677 38.462 0.00 0.00 44.34 1.82
5202 6036 6.179756 TGATGCTTTAGCCTAATGTTCTTCA 58.820 36.000 0.00 0.00 41.18 3.02
5206 6040 2.426842 AGCCTAATGTTCTTCAGGGC 57.573 50.000 0.00 0.00 38.99 5.19
5210 6044 3.282885 CCTAATGTTCTTCAGGGCTTCC 58.717 50.000 0.00 0.00 0.00 3.46
5232 6066 4.518211 CCTCTCCATAATGATGCTTCAACC 59.482 45.833 6.36 0.00 34.96 3.77
5450 6286 8.027771 TGTACGTTTTAGTTTGTGAACCAAAAT 58.972 29.630 0.00 0.00 44.36 1.82
5486 6322 8.561536 TCCCTCTTGACCAACATAAATAGATA 57.438 34.615 0.00 0.00 0.00 1.98
5555 6394 7.651704 ACTTGTGAAACCAGTGCAAAAATATAC 59.348 33.333 0.00 0.00 41.81 1.47
5556 6395 6.146216 TGTGAAACCAGTGCAAAAATATACG 58.854 36.000 0.00 0.00 34.36 3.06
5575 6414 9.498176 AATATACGTTCTTTGACTGGTTTTAGT 57.502 29.630 0.00 0.00 0.00 2.24
5580 6422 5.811399 TCTTTGACTGGTTTTAGTGTGTG 57.189 39.130 0.00 0.00 0.00 3.82
5581 6423 5.250200 TCTTTGACTGGTTTTAGTGTGTGT 58.750 37.500 0.00 0.00 0.00 3.72
5582 6424 4.955925 TTGACTGGTTTTAGTGTGTGTG 57.044 40.909 0.00 0.00 0.00 3.82
5590 6432 3.773860 TTTAGTGTGTGTGTTTGCCAG 57.226 42.857 0.00 0.00 0.00 4.85
5612 6454 7.177216 GCCAGATGGATATAATGGTTTCATTGA 59.823 37.037 2.18 0.00 39.62 2.57
5667 6516 2.721797 CGAAAAGTGAAGATTGTCGCCG 60.722 50.000 0.00 0.00 0.00 6.46
5805 6668 4.974645 TTGGACTATGCTAGTATTGGGG 57.025 45.455 0.00 0.00 39.59 4.96
5938 7036 2.479566 AGTTCCGTACGTGTCCTAGA 57.520 50.000 15.21 0.00 0.00 2.43
6040 7143 9.948964 GTTTAGTAGTTTGGGTCTTATTAGGAA 57.051 33.333 0.00 0.00 0.00 3.36
6078 7181 5.405571 GTGCTGGCTGTGTGTGTATATATAC 59.594 44.000 14.86 14.86 0.00 1.47
6122 7229 3.472652 TCTATCAAGTTGCAACACCGTT 58.527 40.909 30.11 13.68 0.00 4.44
6140 7247 4.218852 ACCGTTGTGGAAAACTGAAAAGAA 59.781 37.500 0.00 0.00 42.00 2.52
6164 7271 9.193133 GAAAATAAAGAAGGAAAAGTAAGGCAC 57.807 33.333 0.00 0.00 0.00 5.01
6167 7274 3.139077 AGAAGGAAAAGTAAGGCACGTG 58.861 45.455 12.28 12.28 0.00 4.49
6223 7330 5.061684 GTGTTCGTCGTGATTTGATGTGATA 59.938 40.000 0.00 0.00 0.00 2.15
6230 7337 7.371159 GTCGTGATTTGATGTGATAGATCCTA 58.629 38.462 0.00 0.00 0.00 2.94
6291 7398 5.103687 GCAAAAACCGACTCCAAAACTAAA 58.896 37.500 0.00 0.00 0.00 1.85
6295 7402 9.471084 CAAAAACCGACTCCAAAACTAAAATAT 57.529 29.630 0.00 0.00 0.00 1.28
6361 7469 2.337583 GATGAGATATGCGCGCCTTTA 58.662 47.619 30.77 17.86 0.00 1.85
6442 7551 6.554605 AGGTTGGTGTTGGTTAACTACTACTA 59.445 38.462 5.42 0.00 37.68 1.82
6465 7574 3.495670 TGGAAACAAAACAGGAACACG 57.504 42.857 0.00 0.00 37.44 4.49
6466 7575 2.820787 TGGAAACAAAACAGGAACACGT 59.179 40.909 0.00 0.00 37.44 4.49
6467 7576 4.008330 TGGAAACAAAACAGGAACACGTA 58.992 39.130 0.00 0.00 37.44 3.57
6468 7577 4.142643 TGGAAACAAAACAGGAACACGTAC 60.143 41.667 0.00 0.00 37.44 3.67
6485 7594 3.631144 CGTACCTCACGTGAAAACTACA 58.369 45.455 20.49 0.00 45.82 2.74
6486 7595 4.043750 CGTACCTCACGTGAAAACTACAA 58.956 43.478 20.49 0.00 45.82 2.41
6487 7596 4.682860 CGTACCTCACGTGAAAACTACAAT 59.317 41.667 20.49 0.19 45.82 2.71
6488 7597 5.858049 CGTACCTCACGTGAAAACTACAATA 59.142 40.000 20.49 0.00 45.82 1.90
6526 7635 8.635877 TGTATTTTTGTTGTTGCGAAAACTAT 57.364 26.923 8.50 0.54 35.36 2.12
6557 7666 1.872952 TGAAACATCTCACGTGCTTGG 59.127 47.619 11.67 3.07 0.00 3.61
6559 7668 2.831685 AACATCTCACGTGCTTGGTA 57.168 45.000 11.67 0.00 0.00 3.25
6560 7669 3.334583 AACATCTCACGTGCTTGGTAT 57.665 42.857 11.67 0.00 0.00 2.73
6561 7670 3.334583 ACATCTCACGTGCTTGGTATT 57.665 42.857 11.67 0.00 0.00 1.89
6562 7671 3.674997 ACATCTCACGTGCTTGGTATTT 58.325 40.909 11.67 0.00 0.00 1.40
6563 7672 4.827692 ACATCTCACGTGCTTGGTATTTA 58.172 39.130 11.67 0.00 0.00 1.40
6703 7865 7.426410 TCTTATAGGAGTTCATAGCTTTGTCG 58.574 38.462 4.00 0.00 0.00 4.35
6709 7871 3.997021 AGTTCATAGCTTTGTCGTTCAGG 59.003 43.478 4.00 0.00 0.00 3.86
6715 7877 1.673920 GCTTTGTCGTTCAGGACCAAA 59.326 47.619 0.00 0.00 36.07 3.28
6716 7878 2.293399 GCTTTGTCGTTCAGGACCAAAT 59.707 45.455 0.00 0.00 36.07 2.32
6718 7880 4.378459 GCTTTGTCGTTCAGGACCAAATAG 60.378 45.833 0.00 0.00 36.07 1.73
6728 7890 7.305474 GTTCAGGACCAAATAGTAACATTGTG 58.695 38.462 0.00 0.00 0.00 3.33
6886 8068 1.304962 TGAGAAGAGGCAGCGGGTA 60.305 57.895 0.00 0.00 0.00 3.69
6951 8133 3.996150 ATTCCAAACTTGCACTGACAG 57.004 42.857 0.00 0.00 0.00 3.51
7235 8419 8.704234 GTCTTGTGTAGAGAAATGTTCTAGTTG 58.296 37.037 0.00 0.00 40.87 3.16
7237 8421 8.958119 TTGTGTAGAGAAATGTTCTAGTTGTT 57.042 30.769 0.00 0.00 40.87 2.83
7365 8551 7.767659 TGATCTACGTACACATAGAGTAACAGT 59.232 37.037 0.00 0.00 31.09 3.55
7369 8555 5.029014 CGTACACATAGAGTAACAGTGAGC 58.971 45.833 0.00 0.00 34.47 4.26
7389 8587 7.611855 AGTGAGCATAAACCAGCTATAAAAAGT 59.388 33.333 0.00 0.00 42.04 2.66
7416 8614 2.359900 GGGTGCTAAGATTGACCACAG 58.640 52.381 0.00 0.00 0.00 3.66
7419 8617 4.265073 GGTGCTAAGATTGACCACAGAAT 58.735 43.478 0.00 0.00 0.00 2.40
7420 8618 4.702131 GGTGCTAAGATTGACCACAGAATT 59.298 41.667 0.00 0.00 0.00 2.17
7459 8658 3.391296 GTGGCATTAGGATCCTTCTGGTA 59.609 47.826 22.03 0.00 34.23 3.25
7472 8671 7.927092 GGATCCTTCTGGTATAAGAGTTACAAC 59.073 40.741 3.84 0.00 34.23 3.32
7491 8690 9.859692 GTTACAACTTACAACTTACAACTGATC 57.140 33.333 0.00 0.00 0.00 2.92
7497 8696 9.046296 ACTTACAACTTACAACTGATCAAAGAG 57.954 33.333 10.37 5.74 0.00 2.85
7499 8698 9.607988 TTACAACTTACAACTGATCAAAGAGAA 57.392 29.630 10.37 0.00 0.00 2.87
7576 8777 4.386867 ACACTACAGCATATAACTGCGT 57.613 40.909 6.14 4.33 46.86 5.24
7592 8793 0.308993 GCGTCATTTCTAGGGCATGC 59.691 55.000 9.90 9.90 0.00 4.06
7680 8881 1.223337 AGAGGGGTCCGGATCCTATTT 59.777 52.381 32.54 16.08 0.00 1.40
7683 8884 3.649502 GAGGGGTCCGGATCCTATTTTTA 59.350 47.826 32.54 0.00 0.00 1.52
7685 8886 4.479425 AGGGGTCCGGATCCTATTTTTAAA 59.521 41.667 32.54 0.00 0.00 1.52
7793 8994 3.088532 TCTATTTCAGTGGGCGCATTTT 58.911 40.909 10.83 0.00 0.00 1.82
7987 9188 7.598869 TGAATCAGTTTGTGAGTGAGTACATAC 59.401 37.037 0.00 0.00 40.90 2.39
8068 9269 3.842820 AGCTAGCTATCGTACATGCATG 58.157 45.455 25.09 25.09 0.00 4.06
8199 9401 4.229123 AGGTCACTTCATCCATCCTCAATT 59.771 41.667 0.00 0.00 0.00 2.32
8207 9409 6.823286 TCATCCATCCTCAATTACCTTACA 57.177 37.500 0.00 0.00 0.00 2.41
8213 9415 8.651389 TCCATCCTCAATTACCTTACATAGAAG 58.349 37.037 0.00 0.00 0.00 2.85
8246 9450 6.997476 ACATTTTTACCCAGTTGATTGCATTT 59.003 30.769 0.00 0.00 0.00 2.32
8307 9511 1.889170 GTGCAAAAAGCTAAGCCTCCT 59.111 47.619 0.00 0.00 45.94 3.69
8313 9523 6.095440 TGCAAAAAGCTAAGCCTCCTATAAAG 59.905 38.462 0.00 0.00 45.94 1.85
8320 9530 1.413077 AGCCTCCTATAAAGTGGACGC 59.587 52.381 0.00 0.00 35.56 5.19
8324 9534 4.618965 CCTCCTATAAAGTGGACGCTTAC 58.381 47.826 0.00 0.00 0.00 2.34
8348 9558 2.442236 AGCACCCATGTCCTTAATGG 57.558 50.000 0.00 0.00 43.66 3.16
8364 9574 7.657336 TCCTTAATGGAAAACATGAAACTGAC 58.343 34.615 0.00 0.00 42.94 3.51
8377 9587 7.047891 ACATGAAACTGACGGATGTTATATGT 58.952 34.615 0.00 0.00 32.85 2.29
8411 9621 9.308000 ACAAGGATTTTATATCCAAAAGTCACA 57.692 29.630 4.61 0.00 40.61 3.58
8512 9723 0.969894 ATCCCTAGCTCGTACATGCC 59.030 55.000 0.00 0.00 0.00 4.40
8515 9726 1.323412 CCTAGCTCGTACATGCCTCT 58.677 55.000 0.00 0.00 0.00 3.69
8524 9735 5.276461 TCGTACATGCCTCTTTGTATGAT 57.724 39.130 0.00 0.00 38.68 2.45
8554 9765 2.430465 TCGAGGGGCGAGTACATATAC 58.570 52.381 0.00 0.00 45.59 1.47
8565 9776 6.267817 GCGAGTACATATACAGGTACAAACA 58.732 40.000 0.00 0.00 42.92 2.83
8654 9865 9.433317 CAAATATCCATTGTGTACACGTATTTC 57.567 33.333 20.61 0.00 0.00 2.17
8673 9884 9.350357 CGTATTTCGTATTATAACAGTATGCCT 57.650 33.333 0.00 0.00 35.20 4.75
8678 9889 8.859236 TCGTATTATAACAGTATGCCTCTAGT 57.141 34.615 0.00 0.00 42.53 2.57
8692 9903 2.628178 CCTCTAGTGTCACAGGAACACA 59.372 50.000 5.62 0.00 36.89 3.72
8716 9927 3.482786 GTTTGCGCTACAGAGTTTGATG 58.517 45.455 9.73 0.00 0.00 3.07
8784 9995 4.018779 ACAAGAATTATGGAACGGAGGGAA 60.019 41.667 0.00 0.00 0.00 3.97
8787 9998 6.509523 AGAATTATGGAACGGAGGGAATAA 57.490 37.500 0.00 0.00 0.00 1.40
8831 10042 7.285401 CCTCATGTAAAATACCCACTGCTTTAT 59.715 37.037 0.00 0.00 0.00 1.40
8860 10071 7.031372 TCATAAACCATGAACGTACTCTGTAC 58.969 38.462 0.00 0.00 40.80 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 6.319141 AGACACAGTCTTCTTTATTTTGCC 57.681 37.500 0.00 0.00 40.28 4.52
73 74 8.311650 TCTAGACACAGTCTTCTTTATTTTGC 57.688 34.615 4.85 0.00 40.28 3.68
88 89 3.963129 ACCTTCCTCTCTCTAGACACAG 58.037 50.000 0.00 0.00 0.00 3.66
92 93 4.646040 GGGTTTACCTTCCTCTCTCTAGAC 59.354 50.000 0.00 0.00 35.85 2.59
169 174 2.410730 CGGACACGTTTCTTATGTGGAC 59.589 50.000 1.13 0.00 46.12 4.02
192 197 4.760204 ACCTTGTAGCGCTTTTCTTACATT 59.240 37.500 18.68 0.00 0.00 2.71
195 200 3.995048 AGACCTTGTAGCGCTTTTCTTAC 59.005 43.478 18.68 7.09 0.00 2.34
228 233 3.814504 ATCCTTTGTTGGAGGTGTCAT 57.185 42.857 0.00 0.00 39.78 3.06
244 249 4.442706 GACAACGATGTTGGTCATATCCT 58.557 43.478 13.62 0.00 40.74 3.24
250 260 1.493772 GACGACAACGATGTTGGTCA 58.506 50.000 16.50 0.00 44.05 4.02
255 265 1.665161 GGAGACGACGACAACGATGTT 60.665 52.381 0.00 0.00 40.74 2.71
268 278 0.240145 CGCACACTAGTTGGAGACGA 59.760 55.000 0.00 0.00 0.00 4.20
271 281 0.888619 CCTCGCACACTAGTTGGAGA 59.111 55.000 16.10 9.36 30.00 3.71
279 289 4.021807 TCACTGATTTAACCTCGCACACTA 60.022 41.667 0.00 0.00 0.00 2.74
344 354 6.212955 CACACAAATCTTCACCGGTTAAATT 58.787 36.000 2.97 3.85 0.00 1.82
368 378 1.129811 CGTACCGTCTTCCATTTTGCC 59.870 52.381 0.00 0.00 0.00 4.52
396 406 2.734755 CCATGGAAGAATGGGCTACA 57.265 50.000 5.56 0.00 43.02 2.74
406 416 0.250234 CTCTTCGTGCCCATGGAAGA 59.750 55.000 15.22 12.75 42.70 2.87
447 458 9.274206 GAAAATATCACTAGTATTGGGAACTCC 57.726 37.037 0.00 0.00 0.00 3.85
451 462 9.120538 GCAAGAAAATATCACTAGTATTGGGAA 57.879 33.333 0.00 0.00 0.00 3.97
452 463 7.719633 GGCAAGAAAATATCACTAGTATTGGGA 59.280 37.037 0.00 0.00 0.00 4.37
453 464 7.502226 TGGCAAGAAAATATCACTAGTATTGGG 59.498 37.037 0.00 0.00 0.00 4.12
454 465 8.450578 TGGCAAGAAAATATCACTAGTATTGG 57.549 34.615 0.00 0.00 0.00 3.16
522 541 1.031571 GCCCTCCATCGCAATGACAA 61.032 55.000 0.00 0.00 34.61 3.18
527 546 2.203070 GTCGCCCTCCATCGCAAT 60.203 61.111 0.00 0.00 0.00 3.56
593 613 3.458118 AGAGAGAGAGGAGCTTGCTAGTA 59.542 47.826 0.00 0.00 0.00 1.82
882 902 4.292186 AGTGAAGGACCACGTACTACTA 57.708 45.455 0.00 0.00 41.67 1.82
883 903 3.151912 AGTGAAGGACCACGTACTACT 57.848 47.619 0.00 0.00 41.67 2.57
884 904 3.505293 AGAAGTGAAGGACCACGTACTAC 59.495 47.826 0.00 0.00 41.67 2.73
1126 1157 0.442310 CACACAGTTAATCCCACGCG 59.558 55.000 3.53 3.53 0.00 6.01
1133 1164 3.180584 CGCTAGATCGCACACAGTTAATC 59.819 47.826 0.00 0.00 0.00 1.75
1135 1166 2.162809 TCGCTAGATCGCACACAGTTAA 59.837 45.455 0.00 0.00 0.00 2.01
1141 1175 1.584308 GAAACTCGCTAGATCGCACAC 59.416 52.381 0.00 0.00 0.00 3.82
1145 1179 1.256635 GCAAGAAACTCGCTAGATCGC 59.743 52.381 0.00 0.00 0.00 4.58
1172 1206 7.041107 TCCAACAAATCTTTGAAAAAGGACAG 58.959 34.615 9.53 0.00 40.55 3.51
1209 1243 8.430801 AAGAGGAACAAATCATAAATCTCTCG 57.569 34.615 0.00 0.00 0.00 4.04
1291 1325 6.129874 AGTAGGGAAAGCAAGAAAAACTCTT 58.870 36.000 0.00 0.00 45.80 2.85
1292 1326 5.696030 AGTAGGGAAAGCAAGAAAAACTCT 58.304 37.500 0.00 0.00 35.13 3.24
1293 1327 6.392625 AAGTAGGGAAAGCAAGAAAAACTC 57.607 37.500 0.00 0.00 0.00 3.01
1294 1328 6.607600 AGAAAGTAGGGAAAGCAAGAAAAACT 59.392 34.615 0.00 0.00 0.00 2.66
1295 1329 6.697455 CAGAAAGTAGGGAAAGCAAGAAAAAC 59.303 38.462 0.00 0.00 0.00 2.43
1296 1330 6.379988 ACAGAAAGTAGGGAAAGCAAGAAAAA 59.620 34.615 0.00 0.00 0.00 1.94
1297 1331 5.891551 ACAGAAAGTAGGGAAAGCAAGAAAA 59.108 36.000 0.00 0.00 0.00 2.29
1347 1768 2.507944 CTGGCCTTGGCGCTCTAT 59.492 61.111 7.64 0.00 0.00 1.98
1348 1769 4.473520 GCTGGCCTTGGCGCTCTA 62.474 66.667 7.64 0.00 0.00 2.43
1353 1774 1.386525 ATTATGTGCTGGCCTTGGCG 61.387 55.000 3.32 0.00 0.00 5.69
1391 1812 4.649692 AGAAGATTGCAAGAAGAGAAGCA 58.350 39.130 4.94 0.00 34.79 3.91
1424 1845 2.209273 TGCGTATGTGCATATGTCCAC 58.791 47.619 6.16 5.61 40.62 4.02
1459 1884 8.622157 CATATATATACAGGGTGGACTAACTCG 58.378 40.741 0.00 0.00 0.00 4.18
1481 1906 7.469043 GCCATATCAAATCACACACACACATAT 60.469 37.037 0.00 0.00 0.00 1.78
1482 1907 6.183360 GCCATATCAAATCACACACACACATA 60.183 38.462 0.00 0.00 0.00 2.29
1483 1908 5.393352 GCCATATCAAATCACACACACACAT 60.393 40.000 0.00 0.00 0.00 3.21
1484 1909 4.082841 GCCATATCAAATCACACACACACA 60.083 41.667 0.00 0.00 0.00 3.72
1505 1930 3.065925 GCAGATTCAGGATTAACACAGCC 59.934 47.826 0.00 0.00 0.00 4.85
1510 1935 7.624360 AATTAACGCAGATTCAGGATTAACA 57.376 32.000 0.00 0.00 0.00 2.41
1513 1938 6.934645 CCCTAATTAACGCAGATTCAGGATTA 59.065 38.462 0.00 0.00 0.00 1.75
1573 1999 0.034059 GAGGCCATGAGGGATACGTG 59.966 60.000 5.01 0.00 40.01 4.49
1589 2016 8.103935 ACTAATCTTCCCAGTAAAAAGAAGAGG 58.896 37.037 7.32 3.59 45.67 3.69
1627 2054 6.143206 TGACTAATCTTCCCAGTATCCATCA 58.857 40.000 0.00 0.00 0.00 3.07
1630 2057 5.724370 TGTTGACTAATCTTCCCAGTATCCA 59.276 40.000 0.00 0.00 0.00 3.41
1636 2063 4.637534 CCATGTGTTGACTAATCTTCCCAG 59.362 45.833 0.00 0.00 0.00 4.45
1655 2082 0.820891 ATGAAAGCTAGCCGGCCATG 60.821 55.000 26.15 14.91 0.00 3.66
1658 2085 1.032114 ACAATGAAAGCTAGCCGGCC 61.032 55.000 26.15 8.19 0.00 6.13
1659 2086 0.378610 GACAATGAAAGCTAGCCGGC 59.621 55.000 21.89 21.89 0.00 6.13
1660 2087 1.936547 GAGACAATGAAAGCTAGCCGG 59.063 52.381 12.13 0.00 0.00 6.13
1661 2088 2.863137 GAGAGACAATGAAAGCTAGCCG 59.137 50.000 12.13 0.00 0.00 5.52
1685 2112 2.751806 AGCTAGCAAGAAATCCACAAGC 59.248 45.455 18.83 0.00 0.00 4.01
1714 2141 3.056588 TGCACACATCAGCACAATAGA 57.943 42.857 0.00 0.00 35.51 1.98
1768 2198 3.808728 TCCATAAGCCATGTAGTGCTTC 58.191 45.455 9.78 0.00 44.12 3.86
1787 2217 3.873952 GACATTAGAAGTGATGGTGCTCC 59.126 47.826 0.00 0.00 0.00 4.70
1798 2228 9.739276 TCAAAACCATTAGATGACATTAGAAGT 57.261 29.630 0.00 0.00 0.00 3.01
1855 2285 6.178239 AGAAGAAAAGTATACGCGCAAAAT 57.822 33.333 5.73 0.00 0.00 1.82
1861 2291 7.445900 TTCATGTAGAAGAAAAGTATACGCG 57.554 36.000 3.53 3.53 0.00 6.01
1889 2319 1.093972 TATTGCATGCTCCGTGTTGG 58.906 50.000 20.33 0.00 40.09 3.77
1893 2323 2.518949 GTTGTTATTGCATGCTCCGTG 58.481 47.619 20.33 0.00 0.00 4.94
1944 2374 7.201350 GCTGGTTGAGCGAATTTAAAATAACAG 60.201 37.037 0.00 0.00 38.15 3.16
2010 2440 7.001674 ACCCAAATATATAATTTCGCTGGTCA 58.998 34.615 0.00 0.00 0.00 4.02
2033 2464 7.978975 TGCCAGCTTTTACAAATTATATTGACC 59.021 33.333 0.00 0.00 34.38 4.02
2089 2520 2.634982 ACATTACGCCAACATTGCAG 57.365 45.000 0.00 0.00 0.00 4.41
2091 2522 1.389784 GCAACATTACGCCAACATTGC 59.610 47.619 0.00 0.00 34.77 3.56
2101 2532 3.009723 ACTTGATCCCAGCAACATTACG 58.990 45.455 0.00 0.00 0.00 3.18
2172 2604 1.476110 CCAGGGGAAAACGTGACTTGA 60.476 52.381 0.00 0.00 0.00 3.02
2186 2618 6.461640 CGTAAAGTAATAATACTCCCAGGGG 58.538 44.000 5.33 0.92 41.57 4.79
2201 2633 8.975439 GCATTAATTCTAGCTAGCGTAAAGTAA 58.025 33.333 16.35 13.94 0.00 2.24
2203 2635 6.424207 GGCATTAATTCTAGCTAGCGTAAAGT 59.576 38.462 16.35 6.96 0.00 2.66
2204 2636 6.423905 TGGCATTAATTCTAGCTAGCGTAAAG 59.576 38.462 16.35 11.03 0.00 1.85
2205 2637 6.285224 TGGCATTAATTCTAGCTAGCGTAAA 58.715 36.000 16.35 5.49 0.00 2.01
2206 2638 5.849510 TGGCATTAATTCTAGCTAGCGTAA 58.150 37.500 16.35 13.03 0.00 3.18
2207 2639 5.462530 TGGCATTAATTCTAGCTAGCGTA 57.537 39.130 16.35 4.98 0.00 4.42
2208 2640 4.336889 TGGCATTAATTCTAGCTAGCGT 57.663 40.909 16.35 3.92 0.00 5.07
2209 2641 4.032217 CGATGGCATTAATTCTAGCTAGCG 59.968 45.833 16.35 5.41 40.55 4.26
2210 2642 4.201763 GCGATGGCATTAATTCTAGCTAGC 60.202 45.833 16.35 6.62 39.62 3.42
2211 2643 4.931601 TGCGATGGCATTAATTCTAGCTAG 59.068 41.667 15.01 15.01 46.21 3.42
2212 2644 4.893608 TGCGATGGCATTAATTCTAGCTA 58.106 39.130 0.00 0.00 46.21 3.32
2213 2645 3.743521 TGCGATGGCATTAATTCTAGCT 58.256 40.909 0.00 0.00 46.21 3.32
2229 2661 0.615331 AGGTGTCTGGATGTTGCGAT 59.385 50.000 0.00 0.00 0.00 4.58
2355 2790 5.530543 GGAGCATGGAGAAGAGGAAAATAAG 59.469 44.000 0.00 0.00 0.00 1.73
2388 2823 1.033746 ACAAAGCACAGCTGCACACT 61.034 50.000 15.27 2.84 46.97 3.55
2389 2824 0.593263 GACAAAGCACAGCTGCACAC 60.593 55.000 15.27 0.12 46.97 3.82
2390 2825 0.749091 AGACAAAGCACAGCTGCACA 60.749 50.000 15.27 0.00 46.97 4.57
2391 2826 0.040603 GAGACAAAGCACAGCTGCAC 60.041 55.000 15.27 5.98 46.97 4.57
2392 2827 1.501337 CGAGACAAAGCACAGCTGCA 61.501 55.000 15.27 0.00 46.97 4.41
2393 2828 1.206072 CGAGACAAAGCACAGCTGC 59.794 57.895 15.27 0.57 44.63 5.25
2394 2829 0.882042 ACCGAGACAAAGCACAGCTG 60.882 55.000 13.48 13.48 39.62 4.24
2395 2830 0.179045 AACCGAGACAAAGCACAGCT 60.179 50.000 0.00 0.00 42.56 4.24
2396 2831 0.040958 CAACCGAGACAAAGCACAGC 60.041 55.000 0.00 0.00 0.00 4.40
2397 2832 1.581934 TCAACCGAGACAAAGCACAG 58.418 50.000 0.00 0.00 0.00 3.66
2425 2860 9.573133 ACTTTGTAAACATGACAGAAGAAAAAG 57.427 29.630 0.00 0.78 0.00 2.27
2455 2892 3.445805 TCTTCCACAAAACCAAGGAACAC 59.554 43.478 0.00 0.00 35.35 3.32
2495 2934 8.556213 TCGCTTTTATTTACTTGTACTTCCAT 57.444 30.769 0.00 0.00 0.00 3.41
2775 3218 0.179100 TCGCCTATGCAGAAGCTGAC 60.179 55.000 0.00 0.00 42.74 3.51
2860 3310 4.994852 TCAAGGTCGAAGTTCTTATTGGTG 59.005 41.667 0.56 0.00 0.00 4.17
2862 3312 6.170675 CTTCAAGGTCGAAGTTCTTATTGG 57.829 41.667 0.56 0.00 38.07 3.16
2898 3348 7.342581 GGATCTCCTTTTTAGAAGAGACCAAT 58.657 38.462 0.00 0.00 38.15 3.16
2908 3358 3.118738 GCTGACCGGATCTCCTTTTTAGA 60.119 47.826 9.46 0.00 0.00 2.10
3028 3513 1.231751 TCATGGGGAGGGGAGAGAGT 61.232 60.000 0.00 0.00 0.00 3.24
3237 3733 7.115378 CAGTGCAAAAAGGATTAAAGATCACAC 59.885 37.037 0.00 0.00 0.00 3.82
3353 3926 3.454812 AGTATACATCCTGAGGGCGTTTT 59.545 43.478 5.50 0.00 0.00 2.43
3680 4253 3.609853 TGGCTCAAATCACACTCCATAC 58.390 45.455 0.00 0.00 0.00 2.39
3788 4367 0.178964 CCTTCTTTTCTGGGGGCACA 60.179 55.000 0.00 0.00 0.00 4.57
3828 4407 4.688511 GACCATGTCCTAGCTATACTCG 57.311 50.000 0.00 0.00 0.00 4.18
4077 4712 0.840288 TGCCCTCTGAACCTGGCTAA 60.840 55.000 0.00 0.00 44.32 3.09
4079 4714 1.719063 TTTGCCCTCTGAACCTGGCT 61.719 55.000 0.00 0.00 44.32 4.75
4081 4716 1.615392 CTTTTTGCCCTCTGAACCTGG 59.385 52.381 0.00 0.00 0.00 4.45
4084 4719 1.332195 AGCTTTTTGCCCTCTGAACC 58.668 50.000 0.00 0.00 44.23 3.62
4130 4765 3.068732 GGCTGATGCAGATCTACACACTA 59.931 47.826 0.00 0.00 41.91 2.74
4146 4781 8.785946 CCAAATAAACATTTTCAAAAGGCTGAT 58.214 29.630 0.00 0.00 0.00 2.90
4147 4782 7.989741 TCCAAATAAACATTTTCAAAAGGCTGA 59.010 29.630 0.00 0.00 0.00 4.26
4167 4802 9.995003 TGAAGTAACAAATGCTAAATTCCAAAT 57.005 25.926 0.00 0.00 0.00 2.32
4200 4835 4.070716 AGAACAAAATGACCAGCTCTCTG 58.929 43.478 0.00 0.00 40.02 3.35
4310 4951 7.661027 CACAATTGTTGGGTTTCCTGAATTAAT 59.339 33.333 8.77 0.00 34.12 1.40
4345 4986 3.721035 TGACCTGCAGATTGATCATACG 58.279 45.455 17.39 0.00 0.00 3.06
4452 5097 1.448540 CACAGGTGGCGACTGGATC 60.449 63.158 12.04 0.00 40.23 3.36
4504 5149 2.373836 TCAAGAATTTTGGGACGGAGGA 59.626 45.455 0.00 0.00 0.00 3.71
4505 5150 2.488153 GTCAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
4506 5151 3.412386 AGTCAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 33.84 4.63
4507 5152 3.502123 AGTCAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 33.84 4.69
4508 5153 5.699097 TTAAGTCAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 33.84 4.79
4509 5154 8.587952 AAATTTAAGTCAAGAATTTTGGGACG 57.412 30.769 0.00 0.00 31.00 4.79
4558 5203 8.948401 ATGGATGTATCTAGTCACATCTTAGT 57.052 34.615 25.12 13.96 46.67 2.24
4562 5207 8.891985 ACATATGGATGTATCTAGTCACATCT 57.108 34.615 25.12 16.04 46.67 2.90
4576 5221 9.109393 GTCTTAAATGTGTGTACATATGGATGT 57.891 33.333 7.80 0.00 46.54 3.06
4577 5222 9.108284 TGTCTTAAATGTGTGTACATATGGATG 57.892 33.333 7.80 0.00 46.54 3.51
4578 5223 9.679661 TTGTCTTAAATGTGTGTACATATGGAT 57.320 29.630 7.80 0.00 46.54 3.41
4579 5224 9.161629 CTTGTCTTAAATGTGTGTACATATGGA 57.838 33.333 7.80 0.00 46.54 3.41
4580 5225 9.161629 TCTTGTCTTAAATGTGTGTACATATGG 57.838 33.333 7.80 0.00 46.54 2.74
4587 5232 9.743057 CCAAAATTCTTGTCTTAAATGTGTGTA 57.257 29.630 0.00 0.00 0.00 2.90
4589 5234 7.925483 TCCCAAAATTCTTGTCTTAAATGTGTG 59.075 33.333 0.00 0.00 0.00 3.82
4590 5235 7.926018 GTCCCAAAATTCTTGTCTTAAATGTGT 59.074 33.333 0.00 0.00 0.00 3.72
4591 5236 7.114811 CGTCCCAAAATTCTTGTCTTAAATGTG 59.885 37.037 0.00 0.00 0.00 3.21
4592 5237 7.145323 CGTCCCAAAATTCTTGTCTTAAATGT 58.855 34.615 0.00 0.00 0.00 2.71
4593 5238 6.586082 CCGTCCCAAAATTCTTGTCTTAAATG 59.414 38.462 0.00 0.00 0.00 2.32
4594 5239 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
4595 5240 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
4599 5244 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
4600 5245 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
4601 5246 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
4602 5247 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
4603 5248 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
4604 5249 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
4605 5250 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
4606 5251 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
4607 5252 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
4608 5253 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
4609 5254 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
4610 5255 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
4611 5256 1.002069 TTAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
4612 5257 2.378378 ATTAGTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
4613 5258 5.537674 TGAATTATTAGTACTCCCTCCGTCC 59.462 44.000 0.00 0.00 0.00 4.79
4614 5259 6.645790 TGAATTATTAGTACTCCCTCCGTC 57.354 41.667 0.00 0.00 0.00 4.79
4615 5260 6.781014 TCATGAATTATTAGTACTCCCTCCGT 59.219 38.462 0.00 0.00 0.00 4.69
4616 5261 7.228314 TCATGAATTATTAGTACTCCCTCCG 57.772 40.000 0.00 0.00 0.00 4.63
4633 5395 1.655099 GCACGCGCAAATTTCATGAAT 59.345 42.857 9.40 0.00 38.36 2.57
4664 5426 0.594540 CGACACCAACCGTTACGACA 60.595 55.000 6.24 0.00 0.00 4.35
4667 5429 1.764851 TAACGACACCAACCGTTACG 58.235 50.000 0.00 0.00 45.65 3.18
4672 5434 2.997986 AGCTAATTAACGACACCAACCG 59.002 45.455 0.00 0.00 0.00 4.44
4710 5472 7.011950 CACGGTAACATGTGAAATGTATACCAT 59.988 37.037 18.57 8.08 38.36 3.55
4711 5473 6.314152 CACGGTAACATGTGAAATGTATACCA 59.686 38.462 18.57 0.00 38.36 3.25
4712 5474 6.314400 ACACGGTAACATGTGAAATGTATACC 59.686 38.462 0.00 4.02 39.38 2.73
4713 5475 7.298507 ACACGGTAACATGTGAAATGTATAC 57.701 36.000 0.00 0.00 39.38 1.47
4714 5476 8.999220 TTACACGGTAACATGTGAAATGTATA 57.001 30.769 0.00 0.00 39.38 1.47
4715 5477 7.908827 TTACACGGTAACATGTGAAATGTAT 57.091 32.000 0.00 0.00 39.38 2.29
4716 5478 7.908827 ATTACACGGTAACATGTGAAATGTA 57.091 32.000 0.00 2.74 39.38 2.29
4717 5479 6.811253 ATTACACGGTAACATGTGAAATGT 57.189 33.333 0.00 3.75 39.38 2.71
4743 5568 8.808529 CACAGATACAAGTAATGCAGTAGTAAC 58.191 37.037 1.27 0.00 0.00 2.50
4799 5624 2.661718 CTCTCCCTTCCAGTAGGAGTC 58.338 57.143 5.27 0.00 46.74 3.36
4846 5671 2.438392 AGTTAGGGTAAGCCATGCTACC 59.562 50.000 7.88 7.88 38.25 3.18
4869 5694 8.418597 TTTTCTCTCCTACAAAGCTAGAGTAA 57.581 34.615 7.19 2.34 34.92 2.24
5015 5840 2.412089 GTGCATGGACGACACTAAAGAC 59.588 50.000 0.10 0.00 0.00 3.01
5074 5899 8.557029 GTTAATAGTACAAACTGTGCAAGACTT 58.443 33.333 0.00 0.00 35.34 3.01
5202 6036 6.337779 GCATCATTATGGAGAGGAAGCCCT 62.338 50.000 0.00 0.00 38.39 5.19
5206 6040 5.618236 TGAAGCATCATTATGGAGAGGAAG 58.382 41.667 0.00 0.00 33.38 3.46
5210 6044 5.374921 AGGTTGAAGCATCATTATGGAGAG 58.625 41.667 0.00 0.00 34.96 3.20
5555 6394 5.163794 ACACACTAAAACCAGTCAAAGAACG 60.164 40.000 0.00 0.00 0.00 3.95
5556 6395 6.027749 CACACACTAAAACCAGTCAAAGAAC 58.972 40.000 0.00 0.00 0.00 3.01
5575 6414 1.031235 CCATCTGGCAAACACACACA 58.969 50.000 0.00 0.00 0.00 3.72
5580 6422 5.536161 ACCATTATATCCATCTGGCAAACAC 59.464 40.000 0.00 0.00 34.44 3.32
5581 6423 5.704354 ACCATTATATCCATCTGGCAAACA 58.296 37.500 0.00 0.00 34.44 2.83
5582 6424 6.655078 AACCATTATATCCATCTGGCAAAC 57.345 37.500 0.00 0.00 34.44 2.93
5612 6454 2.093288 AGATCAACTGCCGACACATGAT 60.093 45.455 0.00 0.00 31.76 2.45
5667 6516 4.335874 TCTCTCACATTCGGTCTAACTAGC 59.664 45.833 0.00 0.00 0.00 3.42
5938 7036 6.598064 GGTTACCTTGAATACTATTGCACTGT 59.402 38.462 0.00 0.00 0.00 3.55
6040 7143 1.406887 CCAGCACCACCGTAAGCTATT 60.407 52.381 0.00 0.00 35.19 1.73
6041 7144 0.178068 CCAGCACCACCGTAAGCTAT 59.822 55.000 0.00 0.00 35.19 2.97
6078 7181 2.633657 GCATAGCCGGTTGATGCG 59.366 61.111 17.65 0.00 36.89 4.73
6082 7189 1.810151 GAACAAAGCATAGCCGGTTGA 59.190 47.619 1.90 0.00 0.00 3.18
6140 7247 7.013942 ACGTGCCTTACTTTTCCTTCTTTATTT 59.986 33.333 0.00 0.00 0.00 1.40
6150 7257 3.767287 GCACGTGCCTTACTTTTCC 57.233 52.632 30.12 0.00 34.31 3.13
6186 7293 0.989805 CGAACACGCGCACGATTTTT 60.990 50.000 5.73 0.00 43.93 1.94
6187 7294 1.438059 CGAACACGCGCACGATTTT 60.438 52.632 5.73 0.00 43.93 1.82
6188 7295 2.170036 CGAACACGCGCACGATTT 59.830 55.556 5.73 0.00 43.93 2.17
6189 7296 2.995450 GACGAACACGCGCACGATT 61.995 57.895 5.73 0.00 43.93 3.34
6190 7297 3.467119 GACGAACACGCGCACGAT 61.467 61.111 5.73 0.00 43.93 3.73
6223 7330 2.562296 TGGAACTTGCCCTTAGGATCT 58.438 47.619 0.00 0.00 33.47 2.75
6230 7337 0.759060 GGGTGTTGGAACTTGCCCTT 60.759 55.000 8.93 0.00 35.10 3.95
6291 7398 8.343787 TCCTAAAATTGGAGAAGGAACCATATT 58.656 33.333 0.00 0.00 36.02 1.28
6295 7402 5.592587 TCCTAAAATTGGAGAAGGAACCA 57.407 39.130 0.00 0.00 33.45 3.67
6327 7435 7.894753 CGCATATCTCATCGTAAATGTGTAATG 59.105 37.037 0.00 0.00 0.00 1.90
6442 7551 5.300792 ACGTGTTCCTGTTTTGTTTCCATAT 59.699 36.000 0.00 0.00 0.00 1.78
6451 7560 3.001939 GTGAGGTACGTGTTCCTGTTTTG 59.998 47.826 12.25 0.00 33.83 2.44
6465 7574 7.330208 ACATATTGTAGTTTTCACGTGAGGTAC 59.670 37.037 19.11 16.63 0.00 3.34
6466 7575 7.329962 CACATATTGTAGTTTTCACGTGAGGTA 59.670 37.037 19.11 0.54 0.00 3.08
6467 7576 6.147164 CACATATTGTAGTTTTCACGTGAGGT 59.853 38.462 19.11 7.25 0.00 3.85
6468 7577 6.147164 ACACATATTGTAGTTTTCACGTGAGG 59.853 38.462 19.11 0.00 36.32 3.86
6588 7697 4.444306 CCATTCCTTTTCCATAGAGCCGTA 60.444 45.833 0.00 0.00 0.00 4.02
6703 7865 7.305474 CACAATGTTACTATTTGGTCCTGAAC 58.695 38.462 0.00 0.00 0.00 3.18
6709 7871 4.658071 CGGCACAATGTTACTATTTGGTC 58.342 43.478 0.00 0.00 0.00 4.02
6715 7877 3.260475 TCTGCGGCACAATGTTACTAT 57.740 42.857 0.00 0.00 0.00 2.12
6716 7878 2.753055 TCTGCGGCACAATGTTACTA 57.247 45.000 0.00 0.00 0.00 1.82
6718 7880 2.095263 ACATTCTGCGGCACAATGTTAC 60.095 45.455 24.77 0.00 37.44 2.50
6728 7890 4.511454 TCATGAATAGTTACATTCTGCGGC 59.489 41.667 0.00 0.00 36.16 6.53
6856 8038 0.607112 TCTTCTCAGGAGCTGCTGTG 59.393 55.000 31.17 28.44 0.00 3.66
6886 8068 3.814005 AATCGGTTATACGCTGAAGGT 57.186 42.857 0.00 0.00 0.00 3.50
7104 8286 8.304596 GTGAGTAGTACAATAATAGCCTATGCA 58.695 37.037 2.52 0.00 41.13 3.96
7105 8287 8.524487 AGTGAGTAGTACAATAATAGCCTATGC 58.476 37.037 2.52 0.00 37.95 3.14
7194 8378 8.147704 TCTACACAAGACATACATTGAAACTCA 58.852 33.333 0.00 0.00 0.00 3.41
7235 8419 1.093496 GTAGCATGGTACCGCCCAAC 61.093 60.000 21.84 0.00 38.20 3.77
7237 8421 2.737881 GGTAGCATGGTACCGCCCA 61.738 63.158 32.19 0.00 39.27 5.36
7345 8531 5.391736 GCTCACTGTTACTCTATGTGTACGT 60.392 44.000 0.00 0.00 0.00 3.57
7346 8532 5.029014 GCTCACTGTTACTCTATGTGTACG 58.971 45.833 0.00 0.00 0.00 3.67
7347 8533 5.950883 TGCTCACTGTTACTCTATGTGTAC 58.049 41.667 0.00 0.00 0.00 2.90
7348 8534 6.775594 ATGCTCACTGTTACTCTATGTGTA 57.224 37.500 0.00 0.00 0.00 2.90
7365 8551 7.938140 ACTTTTTATAGCTGGTTTATGCTCA 57.062 32.000 0.00 0.00 40.35 4.26
7389 8587 5.014202 GGTCAATCTTAGCACCCCTAAAAA 58.986 41.667 0.00 0.00 35.68 1.94
7416 8614 6.422701 GCCACTAACACTTTGGGTAAAAATTC 59.577 38.462 0.00 0.00 0.00 2.17
7419 8617 4.710375 TGCCACTAACACTTTGGGTAAAAA 59.290 37.500 0.00 0.00 0.00 1.94
7420 8618 4.279145 TGCCACTAACACTTTGGGTAAAA 58.721 39.130 0.00 0.00 0.00 1.52
7472 8671 9.261180 TCTCTTTGATCAGTTGTAAGTTGTAAG 57.739 33.333 0.00 0.00 0.00 2.34
7576 8777 3.650281 TCAAGCATGCCCTAGAAATGA 57.350 42.857 15.66 3.72 0.00 2.57
7650 8851 2.158943 CCGGACCCCTCTGAAAGTATTC 60.159 54.545 0.00 0.00 36.04 1.75
7699 8900 9.539194 TTTCTGGAGAGATTCAGCATAGATATA 57.461 33.333 0.00 0.00 0.00 0.86
7793 8994 2.524306 AGCCCGAAATGAATGTTTGGA 58.476 42.857 0.00 0.00 0.00 3.53
7987 9188 3.323243 TGCATATCACTCGCTCATGATG 58.677 45.455 0.00 0.00 36.26 3.07
8068 9269 6.807789 AGGGATTTATTCAGACGTCTTCTAC 58.192 40.000 17.26 6.79 31.12 2.59
8207 9409 9.420118 TGGGTAAAAATGTATTGCATCTTCTAT 57.580 29.630 0.00 0.00 36.67 1.98
8213 9415 7.319646 TCAACTGGGTAAAAATGTATTGCATC 58.680 34.615 0.00 0.00 36.67 3.91
8307 9511 5.981315 GCTACATGTAAGCGTCCACTTTATA 59.019 40.000 7.06 0.00 0.00 0.98
8313 9523 1.659098 GTGCTACATGTAAGCGTCCAC 59.341 52.381 7.06 4.35 0.00 4.02
8324 9534 2.425143 AAGGACATGGGTGCTACATG 57.575 50.000 12.24 12.24 45.86 3.21
8348 9558 5.108385 ACATCCGTCAGTTTCATGTTTTC 57.892 39.130 0.00 0.00 0.00 2.29
8354 9564 7.012327 CCAACATATAACATCCGTCAGTTTCAT 59.988 37.037 0.00 0.00 0.00 2.57
8377 9587 9.486123 TTGGATATAAAATCCTTGTTGATCCAA 57.514 29.630 8.12 8.12 44.58 3.53
8389 9599 9.573133 CTTGTGTGACTTTTGGATATAAAATCC 57.427 33.333 0.00 0.00 38.66 3.01
8405 9615 2.092646 TGCCACTTTACCTTGTGTGACT 60.093 45.455 0.00 0.00 32.72 3.41
8410 9620 9.651913 AATATTAAATTGCCACTTTACCTTGTG 57.348 29.630 0.00 0.00 0.00 3.33
8448 9659 7.319142 ACTTAACGAGAGAGTAGACCATAAC 57.681 40.000 0.00 0.00 0.00 1.89
8504 9715 7.710907 TCAGTAATCATACAAAGAGGCATGTAC 59.289 37.037 0.00 0.00 35.05 2.90
8512 9723 5.689514 CGAGGCTCAGTAATCATACAAAGAG 59.310 44.000 15.95 0.00 34.29 2.85
8515 9726 5.451937 CCTCGAGGCTCAGTAATCATACAAA 60.452 44.000 20.67 0.00 34.29 2.83
8524 9735 4.356979 CCCCTCGAGGCTCAGTAA 57.643 61.111 26.87 0.00 0.00 2.24
8547 9758 6.409234 CCCTCCATGTTTGTACCTGTATATGT 60.409 42.308 0.00 0.00 0.00 2.29
8554 9765 1.271871 TGCCCTCCATGTTTGTACCTG 60.272 52.381 0.00 0.00 0.00 4.00
8565 9776 2.119495 CCTGTACTACTTGCCCTCCAT 58.881 52.381 0.00 0.00 0.00 3.41
8633 9844 5.712217 CGAAATACGTGTACACAATGGAT 57.288 39.130 24.98 8.88 37.22 3.41
8654 9865 8.512956 ACACTAGAGGCATACTGTTATAATACG 58.487 37.037 0.00 0.00 0.00 3.06
8660 9871 5.656859 TGTGACACTAGAGGCATACTGTTAT 59.343 40.000 7.20 0.00 0.00 1.89
8662 9873 3.832490 TGTGACACTAGAGGCATACTGTT 59.168 43.478 7.20 0.00 0.00 3.16
8673 9884 3.006859 CCATGTGTTCCTGTGACACTAGA 59.993 47.826 7.20 0.56 45.79 2.43
8678 9889 2.687425 CAAACCATGTGTTCCTGTGACA 59.313 45.455 0.00 0.00 35.67 3.58
8692 9903 2.185004 AACTCTGTAGCGCAAACCAT 57.815 45.000 11.47 0.00 0.00 3.55
8803 10014 4.096382 GCAGTGGGTATTTTACATGAGGTG 59.904 45.833 0.00 0.00 0.00 4.00
8808 10019 8.250332 ACAATAAAGCAGTGGGTATTTTACATG 58.750 33.333 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.