Multiple sequence alignment - TraesCS5B01G373400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G373400 chr5B 100.000 2375 0 0 1 2375 551140735 551143109 0.000000e+00 4386
1 TraesCS5B01G373400 chr5B 91.349 393 21 4 1 385 551139566 551139179 2.090000e-145 525
2 TraesCS5B01G373400 chr5D 89.041 657 40 11 927 1568 450944353 450944992 0.000000e+00 785
3 TraesCS5B01G373400 chr5D 88.529 401 14 5 387 781 450943981 450944355 7.740000e-125 457
4 TraesCS5B01G373400 chr5D 91.850 319 17 6 1562 1880 450945152 450945461 1.010000e-118 436
5 TraesCS5B01G373400 chr5D 98.438 64 1 0 2312 2375 450947227 450947290 1.930000e-21 113
6 TraesCS5B01G373400 chr1A 97.922 385 8 0 1 385 711492 711876 0.000000e+00 667
7 TraesCS5B01G373400 chr1A 91.257 366 21 2 27 385 706137 705776 2.740000e-134 488
8 TraesCS5B01G373400 chr5A 87.291 598 37 14 917 1495 570175121 570175698 0.000000e+00 647
9 TraesCS5B01G373400 chr5A 87.500 296 17 10 574 865 570174824 570175103 8.190000e-85 324
10 TraesCS5B01G373400 chr5A 92.903 155 9 1 1725 1879 570175744 570175896 8.540000e-55 224
11 TraesCS5B01G373400 chr7B 93.523 386 21 4 3 385 179958796 179959180 2.650000e-159 571
12 TraesCS5B01G373400 chr7B 93.005 386 26 1 1 385 179957667 179957282 1.590000e-156 562
13 TraesCS5B01G373400 chr2B 88.804 393 27 9 1 386 360847921 360847539 1.290000e-127 466
14 TraesCS5B01G373400 chr2B 85.233 386 41 10 5 385 479259369 479259743 1.330000e-102 383
15 TraesCS5B01G373400 chr2B 88.968 281 24 1 112 385 360849129 360849409 8.130000e-90 340
16 TraesCS5B01G373400 chr6B 84.536 388 41 10 5 385 569933207 569932832 1.340000e-97 366


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G373400 chr5B 551140735 551143109 2374 False 4386.000000 4386 100.000000 1 2375 1 chr5B.!!$F1 2374
1 TraesCS5B01G373400 chr5D 450943981 450947290 3309 False 447.750000 785 91.964500 387 2375 4 chr5D.!!$F1 1988
2 TraesCS5B01G373400 chr5A 570174824 570175896 1072 False 398.333333 647 89.231333 574 1879 3 chr5A.!!$F1 1305

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
351 352 0.041576 GAACCAAGTTGAACGTCGCC 60.042 55.0 3.87 0.0 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2250 3864 0.033796 ACATGTGATGGGGAGCAAGG 60.034 55.0 0.0 0.0 33.6 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.547967 AGTATGCATCCCGTTATAAATACAAG 57.452 34.615 0.19 0.00 0.00 3.16
26 27 8.372459 AGTATGCATCCCGTTATAAATACAAGA 58.628 33.333 0.19 0.00 0.00 3.02
27 28 9.162764 GTATGCATCCCGTTATAAATACAAGAT 57.837 33.333 0.19 0.00 0.00 2.40
28 29 7.667043 TGCATCCCGTTATAAATACAAGATC 57.333 36.000 0.00 0.00 0.00 2.75
29 30 7.220740 TGCATCCCGTTATAAATACAAGATCA 58.779 34.615 0.00 0.00 0.00 2.92
30 31 7.882791 TGCATCCCGTTATAAATACAAGATCAT 59.117 33.333 0.00 0.00 0.00 2.45
31 32 8.177663 GCATCCCGTTATAAATACAAGATCATG 58.822 37.037 0.00 0.00 0.00 3.07
32 33 7.667043 TCCCGTTATAAATACAAGATCATGC 57.333 36.000 0.00 0.00 0.00 4.06
33 34 6.367695 TCCCGTTATAAATACAAGATCATGCG 59.632 38.462 0.00 0.00 0.00 4.73
34 35 6.015504 CCGTTATAAATACAAGATCATGCGC 58.984 40.000 0.00 0.00 0.00 6.09
35 36 6.128553 CCGTTATAAATACAAGATCATGCGCT 60.129 38.462 9.73 0.00 0.00 5.92
36 37 7.290842 CGTTATAAATACAAGATCATGCGCTT 58.709 34.615 9.73 0.00 0.00 4.68
37 38 7.266966 CGTTATAAATACAAGATCATGCGCTTG 59.733 37.037 16.66 16.66 45.27 4.01
38 39 3.976793 AATACAAGATCATGCGCTTGG 57.023 42.857 21.59 8.85 44.33 3.61
39 40 2.401583 TACAAGATCATGCGCTTGGT 57.598 45.000 21.59 16.08 44.33 3.67
40 41 0.806868 ACAAGATCATGCGCTTGGTG 59.193 50.000 21.59 16.14 44.33 4.17
41 42 0.524816 CAAGATCATGCGCTTGGTGC 60.525 55.000 21.59 11.84 38.22 5.01
42 43 0.679002 AAGATCATGCGCTTGGTGCT 60.679 50.000 21.59 13.65 40.03 4.40
43 44 1.063649 GATCATGCGCTTGGTGCTG 59.936 57.895 21.59 2.59 40.03 4.41
44 45 1.651240 GATCATGCGCTTGGTGCTGT 61.651 55.000 21.59 3.34 40.03 4.40
45 46 1.929806 ATCATGCGCTTGGTGCTGTG 61.930 55.000 21.59 4.25 40.03 3.66
46 47 3.367743 ATGCGCTTGGTGCTGTGG 61.368 61.111 9.73 0.00 40.03 4.17
49 50 3.289834 CGCTTGGTGCTGTGGCTT 61.290 61.111 0.00 0.00 40.11 4.35
50 51 2.337532 GCTTGGTGCTGTGGCTTG 59.662 61.111 0.00 0.00 39.59 4.01
51 52 2.337532 CTTGGTGCTGTGGCTTGC 59.662 61.111 0.00 0.00 39.59 4.01
52 53 2.123769 TTGGTGCTGTGGCTTGCT 60.124 55.556 0.00 0.00 39.59 3.91
53 54 2.138656 CTTGGTGCTGTGGCTTGCTC 62.139 60.000 0.00 0.00 39.59 4.26
54 55 3.730761 GGTGCTGTGGCTTGCTCG 61.731 66.667 0.00 0.00 39.59 5.03
55 56 2.666190 GTGCTGTGGCTTGCTCGA 60.666 61.111 0.00 0.00 39.59 4.04
56 57 2.357881 TGCTGTGGCTTGCTCGAG 60.358 61.111 8.45 8.45 39.59 4.04
57 58 3.797546 GCTGTGGCTTGCTCGAGC 61.798 66.667 30.42 30.42 41.96 5.03
67 68 2.558313 GCTCGAGCAGGTTTGTGC 59.442 61.111 31.91 0.76 44.35 4.57
68 69 2.970974 GCTCGAGCAGGTTTGTGCC 61.971 63.158 31.91 0.00 45.20 5.01
69 70 1.597854 CTCGAGCAGGTTTGTGCCA 60.598 57.895 0.00 0.00 45.20 4.92
70 71 1.845809 CTCGAGCAGGTTTGTGCCAC 61.846 60.000 0.00 0.00 45.20 5.01
71 72 1.893808 CGAGCAGGTTTGTGCCACT 60.894 57.895 0.00 0.00 45.20 4.00
72 73 1.656441 GAGCAGGTTTGTGCCACTG 59.344 57.895 0.00 0.00 45.20 3.66
73 74 1.076777 AGCAGGTTTGTGCCACTGT 60.077 52.632 0.00 0.00 45.20 3.55
74 75 1.066257 GCAGGTTTGTGCCACTGTG 59.934 57.895 0.00 0.00 37.49 3.66
75 76 1.666209 GCAGGTTTGTGCCACTGTGT 61.666 55.000 7.08 0.00 37.49 3.72
76 77 0.101040 CAGGTTTGTGCCACTGTGTG 59.899 55.000 7.08 0.00 0.00 3.82
77 78 1.226945 GGTTTGTGCCACTGTGTGC 60.227 57.895 7.08 10.23 31.34 4.57
78 79 1.586042 GTTTGTGCCACTGTGTGCG 60.586 57.895 7.08 0.00 31.34 5.34
79 80 2.769539 TTTGTGCCACTGTGTGCGG 61.770 57.895 7.08 0.00 31.34 5.69
81 82 4.927782 GTGCCACTGTGTGCGGGA 62.928 66.667 7.08 0.00 31.34 5.14
82 83 3.952508 TGCCACTGTGTGCGGGAT 61.953 61.111 7.08 0.00 31.34 3.85
83 84 3.127533 GCCACTGTGTGCGGGATC 61.128 66.667 7.08 0.00 31.34 3.36
84 85 2.815211 CCACTGTGTGCGGGATCG 60.815 66.667 7.08 0.00 39.81 3.69
85 86 2.261361 CACTGTGTGCGGGATCGA 59.739 61.111 0.00 0.00 39.00 3.59
86 87 1.374125 CACTGTGTGCGGGATCGAA 60.374 57.895 0.00 0.00 39.00 3.71
87 88 0.740868 CACTGTGTGCGGGATCGAAT 60.741 55.000 0.00 0.00 39.00 3.34
88 89 0.460284 ACTGTGTGCGGGATCGAATC 60.460 55.000 0.00 0.00 39.00 2.52
96 97 2.432123 GGATCGAATCCCAGGGGC 59.568 66.667 5.33 0.00 43.88 5.80
97 98 2.150051 GGATCGAATCCCAGGGGCT 61.150 63.158 5.33 0.00 43.88 5.19
98 99 1.072159 GATCGAATCCCAGGGGCTG 59.928 63.158 5.33 0.00 34.68 4.85
99 100 3.125376 ATCGAATCCCAGGGGCTGC 62.125 63.158 5.33 0.00 34.68 5.25
106 107 3.384532 CCAGGGGCTGCGCATTTT 61.385 61.111 12.24 0.00 0.00 1.82
107 108 2.051518 CCAGGGGCTGCGCATTTTA 61.052 57.895 12.24 0.00 0.00 1.52
108 109 1.394266 CCAGGGGCTGCGCATTTTAT 61.394 55.000 12.24 0.00 0.00 1.40
109 110 1.317613 CAGGGGCTGCGCATTTTATA 58.682 50.000 12.24 0.00 0.00 0.98
110 111 1.888512 CAGGGGCTGCGCATTTTATAT 59.111 47.619 12.24 0.00 0.00 0.86
111 112 2.297033 CAGGGGCTGCGCATTTTATATT 59.703 45.455 12.24 0.00 0.00 1.28
112 113 2.965147 AGGGGCTGCGCATTTTATATTT 59.035 40.909 12.24 0.00 0.00 1.40
113 114 3.387699 AGGGGCTGCGCATTTTATATTTT 59.612 39.130 12.24 0.00 0.00 1.82
114 115 4.126437 GGGGCTGCGCATTTTATATTTTT 58.874 39.130 12.24 0.00 0.00 1.94
133 134 3.835378 TTTTCGATTTTTACTCGGCCC 57.165 42.857 0.00 0.00 36.78 5.80
134 135 2.476126 TTCGATTTTTACTCGGCCCA 57.524 45.000 0.00 0.00 36.78 5.36
135 136 1.729284 TCGATTTTTACTCGGCCCAC 58.271 50.000 0.00 0.00 36.78 4.61
136 137 1.276989 TCGATTTTTACTCGGCCCACT 59.723 47.619 0.00 0.00 36.78 4.00
137 138 1.396996 CGATTTTTACTCGGCCCACTG 59.603 52.381 0.00 0.00 32.58 3.66
138 139 2.706890 GATTTTTACTCGGCCCACTGA 58.293 47.619 0.00 0.00 0.00 3.41
139 140 1.886886 TTTTTACTCGGCCCACTGAC 58.113 50.000 0.00 0.00 0.00 3.51
140 141 0.759959 TTTTACTCGGCCCACTGACA 59.240 50.000 0.00 0.00 0.00 3.58
141 142 0.981183 TTTACTCGGCCCACTGACAT 59.019 50.000 0.00 0.00 0.00 3.06
142 143 1.855295 TTACTCGGCCCACTGACATA 58.145 50.000 0.00 0.00 0.00 2.29
143 144 2.082140 TACTCGGCCCACTGACATAT 57.918 50.000 0.00 0.00 0.00 1.78
144 145 0.465705 ACTCGGCCCACTGACATATG 59.534 55.000 0.00 0.00 0.00 1.78
145 146 0.250038 CTCGGCCCACTGACATATGG 60.250 60.000 7.80 0.00 35.59 2.74
149 150 4.462394 CCACTGACATATGGGCCG 57.538 61.111 7.80 0.00 31.83 6.13
150 151 1.829456 CCACTGACATATGGGCCGA 59.171 57.895 7.80 0.00 31.83 5.54
151 152 0.532862 CCACTGACATATGGGCCGAC 60.533 60.000 7.80 0.00 31.83 4.79
152 153 0.875908 CACTGACATATGGGCCGACG 60.876 60.000 7.80 0.00 0.00 5.12
153 154 1.327690 ACTGACATATGGGCCGACGT 61.328 55.000 7.80 0.00 0.00 4.34
154 155 0.597637 CTGACATATGGGCCGACGTC 60.598 60.000 5.18 5.18 0.00 4.34
155 156 1.324005 TGACATATGGGCCGACGTCA 61.324 55.000 17.16 11.08 0.00 4.35
156 157 0.874607 GACATATGGGCCGACGTCAC 60.875 60.000 17.16 6.70 0.00 3.67
157 158 1.142965 CATATGGGCCGACGTCACA 59.857 57.895 17.16 8.92 0.00 3.58
158 159 0.875908 CATATGGGCCGACGTCACAG 60.876 60.000 17.16 4.57 0.00 3.66
159 160 2.644555 ATATGGGCCGACGTCACAGC 62.645 60.000 17.16 14.48 0.00 4.40
167 168 2.188469 ACGTCACAGCCCACGTTT 59.812 55.556 0.00 0.00 46.93 3.60
168 169 1.442567 ACGTCACAGCCCACGTTTA 59.557 52.632 0.00 0.00 46.93 2.01
169 170 0.599204 ACGTCACAGCCCACGTTTAG 60.599 55.000 0.00 0.00 46.93 1.85
170 171 0.599204 CGTCACAGCCCACGTTTAGT 60.599 55.000 0.00 0.00 0.00 2.24
171 172 1.589803 GTCACAGCCCACGTTTAGTT 58.410 50.000 0.00 0.00 0.00 2.24
172 173 1.529865 GTCACAGCCCACGTTTAGTTC 59.470 52.381 0.00 0.00 0.00 3.01
173 174 0.872388 CACAGCCCACGTTTAGTTCC 59.128 55.000 0.00 0.00 0.00 3.62
174 175 0.601841 ACAGCCCACGTTTAGTTCCG 60.602 55.000 0.00 0.00 0.00 4.30
175 176 1.004200 AGCCCACGTTTAGTTCCGG 60.004 57.895 0.00 0.00 0.00 5.14
176 177 1.301953 GCCCACGTTTAGTTCCGGT 60.302 57.895 0.00 0.00 0.00 5.28
177 178 1.571215 GCCCACGTTTAGTTCCGGTG 61.571 60.000 0.00 0.00 0.00 4.94
178 179 0.952010 CCCACGTTTAGTTCCGGTGG 60.952 60.000 0.00 0.00 0.00 4.61
179 180 1.571215 CCACGTTTAGTTCCGGTGGC 61.571 60.000 0.00 0.00 0.00 5.01
180 181 0.601841 CACGTTTAGTTCCGGTGGCT 60.602 55.000 0.00 0.50 0.00 4.75
181 182 0.107268 ACGTTTAGTTCCGGTGGCTT 59.893 50.000 0.00 0.00 0.00 4.35
182 183 0.515564 CGTTTAGTTCCGGTGGCTTG 59.484 55.000 0.00 0.00 0.00 4.01
183 184 0.240145 GTTTAGTTCCGGTGGCTTGC 59.760 55.000 0.00 0.00 0.00 4.01
184 185 1.231958 TTTAGTTCCGGTGGCTTGCG 61.232 55.000 0.00 0.00 0.00 4.85
185 186 2.386064 TTAGTTCCGGTGGCTTGCGT 62.386 55.000 0.00 0.00 0.00 5.24
186 187 2.386064 TAGTTCCGGTGGCTTGCGTT 62.386 55.000 0.00 0.00 0.00 4.84
187 188 2.517402 TTCCGGTGGCTTGCGTTT 60.517 55.556 0.00 0.00 0.00 3.60
188 189 2.122167 TTCCGGTGGCTTGCGTTTT 61.122 52.632 0.00 0.00 0.00 2.43
189 190 1.668101 TTCCGGTGGCTTGCGTTTTT 61.668 50.000 0.00 0.00 0.00 1.94
203 204 4.371975 TTTTTCTCTCGGCCCACG 57.628 55.556 0.00 0.00 46.11 4.94
204 205 1.448497 TTTTTCTCTCGGCCCACGT 59.552 52.632 0.00 0.00 44.69 4.49
205 206 0.882927 TTTTTCTCTCGGCCCACGTG 60.883 55.000 9.08 9.08 44.69 4.49
206 207 2.035237 TTTTCTCTCGGCCCACGTGT 62.035 55.000 15.65 0.00 44.69 4.49
207 208 2.430382 TTTCTCTCGGCCCACGTGTC 62.430 60.000 15.65 5.64 44.69 3.67
208 209 3.374402 CTCTCGGCCCACGTGTCT 61.374 66.667 15.65 0.00 44.69 3.41
209 210 3.343788 CTCTCGGCCCACGTGTCTC 62.344 68.421 15.65 2.58 44.69 3.36
210 211 4.436998 CTCGGCCCACGTGTCTCC 62.437 72.222 15.65 10.97 44.69 3.71
211 212 4.988716 TCGGCCCACGTGTCTCCT 62.989 66.667 15.65 0.00 44.69 3.69
212 213 3.066190 CGGCCCACGTGTCTCCTA 61.066 66.667 15.65 0.00 37.93 2.94
213 214 2.577593 GGCCCACGTGTCTCCTAC 59.422 66.667 15.65 0.00 0.00 3.18
214 215 2.181021 GCCCACGTGTCTCCTACG 59.819 66.667 15.65 0.00 46.31 3.51
215 216 2.181021 CCCACGTGTCTCCTACGC 59.819 66.667 15.65 0.00 44.87 4.42
216 217 2.632544 CCCACGTGTCTCCTACGCA 61.633 63.158 15.65 0.00 44.87 5.24
217 218 1.287815 CCACGTGTCTCCTACGCAA 59.712 57.895 15.65 0.00 44.87 4.85
218 219 0.319211 CCACGTGTCTCCTACGCAAA 60.319 55.000 15.65 0.00 44.87 3.68
219 220 1.671850 CCACGTGTCTCCTACGCAAAT 60.672 52.381 15.65 0.00 44.87 2.32
220 221 2.416296 CCACGTGTCTCCTACGCAAATA 60.416 50.000 15.65 0.00 44.87 1.40
221 222 2.597305 CACGTGTCTCCTACGCAAATAC 59.403 50.000 7.58 0.00 44.87 1.89
222 223 1.844357 CGTGTCTCCTACGCAAATACG 59.156 52.381 0.00 0.00 38.59 3.06
223 224 2.476686 CGTGTCTCCTACGCAAATACGA 60.477 50.000 0.00 0.00 38.59 3.43
224 225 3.106672 GTGTCTCCTACGCAAATACGAG 58.893 50.000 0.00 0.00 38.54 4.18
225 226 3.011818 TGTCTCCTACGCAAATACGAGA 58.988 45.455 0.00 0.00 36.70 4.04
226 227 3.630769 TGTCTCCTACGCAAATACGAGAT 59.369 43.478 0.00 0.00 36.70 2.75
227 228 4.818005 TGTCTCCTACGCAAATACGAGATA 59.182 41.667 0.00 0.00 36.70 1.98
228 229 5.145759 GTCTCCTACGCAAATACGAGATAC 58.854 45.833 0.00 0.00 36.70 2.24
247 248 0.921347 CGTATGCAACGTGTAGAGCC 59.079 55.000 11.62 0.00 46.72 4.70
248 249 1.734377 CGTATGCAACGTGTAGAGCCA 60.734 52.381 11.62 0.00 46.72 4.75
249 250 1.927174 GTATGCAACGTGTAGAGCCAG 59.073 52.381 0.00 0.00 0.00 4.85
250 251 0.391661 ATGCAACGTGTAGAGCCAGG 60.392 55.000 0.00 0.00 0.00 4.45
251 252 1.292223 GCAACGTGTAGAGCCAGGA 59.708 57.895 0.00 0.00 0.00 3.86
252 253 1.014564 GCAACGTGTAGAGCCAGGAC 61.015 60.000 0.00 0.00 0.00 3.85
253 254 0.603569 CAACGTGTAGAGCCAGGACT 59.396 55.000 0.00 0.00 0.00 3.85
254 255 0.603569 AACGTGTAGAGCCAGGACTG 59.396 55.000 0.00 0.00 0.00 3.51
255 256 0.539901 ACGTGTAGAGCCAGGACTGT 60.540 55.000 0.00 0.00 0.00 3.55
256 257 0.603569 CGTGTAGAGCCAGGACTGTT 59.396 55.000 0.00 0.00 0.00 3.16
257 258 1.670087 CGTGTAGAGCCAGGACTGTTG 60.670 57.143 0.00 0.00 0.00 3.33
258 259 1.344763 GTGTAGAGCCAGGACTGTTGT 59.655 52.381 0.00 0.00 0.00 3.32
259 260 2.047061 TGTAGAGCCAGGACTGTTGTT 58.953 47.619 0.00 0.00 0.00 2.83
260 261 2.438021 TGTAGAGCCAGGACTGTTGTTT 59.562 45.455 0.00 0.00 0.00 2.83
261 262 2.262423 AGAGCCAGGACTGTTGTTTC 57.738 50.000 0.00 0.00 0.00 2.78
262 263 1.490490 AGAGCCAGGACTGTTGTTTCA 59.510 47.619 0.00 0.00 0.00 2.69
263 264 2.092429 AGAGCCAGGACTGTTGTTTCAA 60.092 45.455 0.00 0.00 0.00 2.69
264 265 2.024414 AGCCAGGACTGTTGTTTCAAC 58.976 47.619 5.78 5.78 0.00 3.18
265 266 1.067060 GCCAGGACTGTTGTTTCAACC 59.933 52.381 9.60 0.00 0.00 3.77
266 267 2.654863 CCAGGACTGTTGTTTCAACCT 58.345 47.619 9.60 0.00 0.00 3.50
267 268 2.618709 CCAGGACTGTTGTTTCAACCTC 59.381 50.000 9.60 5.03 0.00 3.85
268 269 3.278574 CAGGACTGTTGTTTCAACCTCA 58.721 45.455 9.60 0.00 0.00 3.86
269 270 3.313526 CAGGACTGTTGTTTCAACCTCAG 59.686 47.826 9.60 8.64 35.92 3.35
270 271 2.618709 GGACTGTTGTTTCAACCTCAGG 59.381 50.000 9.60 0.00 34.93 3.86
271 272 2.618709 GACTGTTGTTTCAACCTCAGGG 59.381 50.000 0.00 0.00 34.93 4.45
272 273 2.241176 ACTGTTGTTTCAACCTCAGGGA 59.759 45.455 0.00 0.00 34.93 4.20
273 274 2.618709 CTGTTGTTTCAACCTCAGGGAC 59.381 50.000 0.00 0.00 36.25 4.46
274 275 1.954382 GTTGTTTCAACCTCAGGGACC 59.046 52.381 0.00 0.00 36.25 4.46
275 276 0.107831 TGTTTCAACCTCAGGGACCG 59.892 55.000 0.00 0.00 36.25 4.79
276 277 0.108019 GTTTCAACCTCAGGGACCGT 59.892 55.000 0.00 0.00 36.25 4.83
277 278 1.345415 GTTTCAACCTCAGGGACCGTA 59.655 52.381 0.00 0.00 36.25 4.02
278 279 1.946984 TTCAACCTCAGGGACCGTAT 58.053 50.000 0.00 0.00 36.25 3.06
279 280 1.946984 TCAACCTCAGGGACCGTATT 58.053 50.000 0.00 0.00 36.25 1.89
280 281 3.104519 TCAACCTCAGGGACCGTATTA 57.895 47.619 0.00 0.00 36.25 0.98
281 282 3.443052 TCAACCTCAGGGACCGTATTAA 58.557 45.455 0.00 0.00 36.25 1.40
282 283 3.196254 TCAACCTCAGGGACCGTATTAAC 59.804 47.826 0.00 0.00 36.25 2.01
283 284 3.111741 ACCTCAGGGACCGTATTAACT 57.888 47.619 0.00 0.00 36.25 2.24
284 285 4.255510 ACCTCAGGGACCGTATTAACTA 57.744 45.455 0.00 0.00 36.25 2.24
285 286 4.812653 ACCTCAGGGACCGTATTAACTAT 58.187 43.478 0.00 0.00 36.25 2.12
286 287 5.957132 ACCTCAGGGACCGTATTAACTATA 58.043 41.667 0.00 0.00 36.25 1.31
287 288 6.559429 ACCTCAGGGACCGTATTAACTATAT 58.441 40.000 0.00 0.00 36.25 0.86
288 289 7.702785 ACCTCAGGGACCGTATTAACTATATA 58.297 38.462 0.00 0.00 36.25 0.86
289 290 8.342270 ACCTCAGGGACCGTATTAACTATATAT 58.658 37.037 0.00 0.00 36.25 0.86
290 291 9.198475 CCTCAGGGACCGTATTAACTATATATT 57.802 37.037 0.00 0.00 33.58 1.28
306 307 7.618137 ACTATATATTTTCATGTACCGGGACC 58.382 38.462 16.09 0.00 0.00 4.46
307 308 2.032680 ATTTTCATGTACCGGGACCG 57.967 50.000 16.09 5.55 39.44 4.79
308 309 0.686224 TTTTCATGTACCGGGACCGT 59.314 50.000 16.09 0.00 37.81 4.83
309 310 1.554836 TTTCATGTACCGGGACCGTA 58.445 50.000 16.09 0.00 37.81 4.02
310 311 1.779221 TTCATGTACCGGGACCGTAT 58.221 50.000 16.09 0.00 37.81 3.06
311 312 1.779221 TCATGTACCGGGACCGTATT 58.221 50.000 16.09 0.00 37.81 1.89
312 313 1.409790 TCATGTACCGGGACCGTATTG 59.590 52.381 16.09 4.44 37.81 1.90
313 314 1.409790 CATGTACCGGGACCGTATTGA 59.590 52.381 16.09 0.00 37.81 2.57
314 315 1.554836 TGTACCGGGACCGTATTGAA 58.445 50.000 16.09 0.00 37.81 2.69
315 316 1.477700 TGTACCGGGACCGTATTGAAG 59.522 52.381 16.09 0.00 37.81 3.02
316 317 0.461135 TACCGGGACCGTATTGAAGC 59.539 55.000 6.32 0.00 37.81 3.86
317 318 1.219664 CCGGGACCGTATTGAAGCA 59.780 57.895 10.17 0.00 37.81 3.91
318 319 0.391927 CCGGGACCGTATTGAAGCAA 60.392 55.000 10.17 0.00 37.81 3.91
319 320 1.663695 CGGGACCGTATTGAAGCAAT 58.336 50.000 1.86 0.00 37.80 3.56
320 321 2.484065 CCGGGACCGTATTGAAGCAATA 60.484 50.000 10.17 0.00 34.71 1.90
340 341 1.308998 CGCAAGTTCCAGAACCAAGT 58.691 50.000 6.91 0.00 42.06 3.16
341 342 1.676006 CGCAAGTTCCAGAACCAAGTT 59.324 47.619 6.91 0.00 42.06 2.66
342 343 2.541588 CGCAAGTTCCAGAACCAAGTTG 60.542 50.000 6.91 6.43 42.06 3.16
343 344 2.687935 GCAAGTTCCAGAACCAAGTTGA 59.312 45.455 3.87 0.00 42.06 3.18
344 345 3.130340 GCAAGTTCCAGAACCAAGTTGAA 59.870 43.478 3.87 0.00 42.06 2.69
345 346 4.672409 CAAGTTCCAGAACCAAGTTGAAC 58.328 43.478 3.87 0.00 42.06 3.18
346 347 2.943033 AGTTCCAGAACCAAGTTGAACG 59.057 45.455 3.87 0.00 42.06 3.95
347 348 2.681344 GTTCCAGAACCAAGTTGAACGT 59.319 45.455 3.87 0.00 35.36 3.99
348 349 2.557317 TCCAGAACCAAGTTGAACGTC 58.443 47.619 3.87 0.00 0.00 4.34
349 350 1.260561 CCAGAACCAAGTTGAACGTCG 59.739 52.381 3.87 0.00 0.00 5.12
350 351 0.935196 AGAACCAAGTTGAACGTCGC 59.065 50.000 3.87 0.00 0.00 5.19
351 352 0.041576 GAACCAAGTTGAACGTCGCC 60.042 55.000 3.87 0.00 0.00 5.54
352 353 0.745128 AACCAAGTTGAACGTCGCCA 60.745 50.000 3.87 0.00 0.00 5.69
353 354 1.157870 ACCAAGTTGAACGTCGCCAG 61.158 55.000 3.87 0.00 0.00 4.85
354 355 1.082756 CAAGTTGAACGTCGCCAGC 60.083 57.895 0.00 0.00 0.00 4.85
355 356 2.594962 AAGTTGAACGTCGCCAGCG 61.595 57.895 5.50 5.50 41.35 5.18
356 357 2.964438 AAGTTGAACGTCGCCAGCGA 62.964 55.000 11.27 11.27 46.87 4.93
364 365 3.506096 TCGCCAGCGACTACGAGG 61.506 66.667 11.27 0.00 44.01 4.63
365 366 3.506096 CGCCAGCGACTACGAGGA 61.506 66.667 6.06 0.00 42.83 3.71
366 367 2.102553 GCCAGCGACTACGAGGAC 59.897 66.667 0.00 0.00 42.66 3.85
367 368 2.408241 GCCAGCGACTACGAGGACT 61.408 63.158 0.00 0.00 42.66 3.85
368 369 1.094073 GCCAGCGACTACGAGGACTA 61.094 60.000 0.00 0.00 42.66 2.59
369 370 1.595466 CCAGCGACTACGAGGACTAT 58.405 55.000 0.00 0.00 42.66 2.12
370 371 2.763933 CCAGCGACTACGAGGACTATA 58.236 52.381 0.00 0.00 42.66 1.31
371 372 2.737783 CCAGCGACTACGAGGACTATAG 59.262 54.545 0.00 0.00 42.66 1.31
372 373 3.554544 CCAGCGACTACGAGGACTATAGA 60.555 52.174 6.78 0.00 42.66 1.98
373 374 4.247258 CAGCGACTACGAGGACTATAGAT 58.753 47.826 6.78 0.00 42.66 1.98
374 375 4.092237 CAGCGACTACGAGGACTATAGATG 59.908 50.000 6.78 0.00 42.66 2.90
375 376 3.181518 GCGACTACGAGGACTATAGATGC 60.182 52.174 6.78 0.00 42.66 3.91
376 377 3.995048 CGACTACGAGGACTATAGATGCA 59.005 47.826 6.78 0.00 42.66 3.96
377 378 4.451435 CGACTACGAGGACTATAGATGCAA 59.549 45.833 6.78 0.00 42.66 4.08
378 379 5.122554 CGACTACGAGGACTATAGATGCAAT 59.877 44.000 6.78 0.00 42.66 3.56
379 380 6.348622 CGACTACGAGGACTATAGATGCAATT 60.349 42.308 6.78 0.00 42.66 2.32
380 381 7.148457 CGACTACGAGGACTATAGATGCAATTA 60.148 40.741 6.78 0.00 42.66 1.40
381 382 8.582657 ACTACGAGGACTATAGATGCAATTAT 57.417 34.615 6.78 0.00 0.00 1.28
382 383 8.679100 ACTACGAGGACTATAGATGCAATTATC 58.321 37.037 6.78 0.00 0.00 1.75
383 384 7.710676 ACGAGGACTATAGATGCAATTATCT 57.289 36.000 6.78 0.00 40.39 1.98
384 385 7.767261 ACGAGGACTATAGATGCAATTATCTC 58.233 38.462 6.78 0.00 38.35 2.75
385 386 6.909895 CGAGGACTATAGATGCAATTATCTCG 59.090 42.308 6.78 3.27 38.35 4.04
406 407 3.315191 CGGAACAAAACAGAGGAACATGT 59.685 43.478 0.00 0.00 0.00 3.21
435 436 5.308825 AGGGACATGAACAAAACAGAGTAG 58.691 41.667 0.00 0.00 0.00 2.57
455 456 2.397413 CTTGACCTGGTTCTGGCGGT 62.397 60.000 0.00 0.00 0.00 5.68
465 466 1.880027 GTTCTGGCGGTCAAGTGATTT 59.120 47.619 0.00 0.00 0.00 2.17
466 467 2.270352 TCTGGCGGTCAAGTGATTTT 57.730 45.000 0.00 0.00 0.00 1.82
467 468 1.879380 TCTGGCGGTCAAGTGATTTTG 59.121 47.619 0.00 0.00 0.00 2.44
468 469 1.608590 CTGGCGGTCAAGTGATTTTGT 59.391 47.619 0.00 0.00 0.00 2.83
469 470 1.606668 TGGCGGTCAAGTGATTTTGTC 59.393 47.619 0.00 0.00 0.00 3.18
470 471 1.399727 GGCGGTCAAGTGATTTTGTCG 60.400 52.381 0.00 0.00 0.00 4.35
471 472 1.950472 CGGTCAAGTGATTTTGTCGC 58.050 50.000 0.00 0.00 37.62 5.19
472 473 1.721489 CGGTCAAGTGATTTTGTCGCG 60.721 52.381 0.00 0.00 42.24 5.87
473 474 1.318251 GTCAAGTGATTTTGTCGCGC 58.682 50.000 0.00 0.00 42.24 6.86
474 475 0.110867 TCAAGTGATTTTGTCGCGCG 60.111 50.000 26.76 26.76 42.24 6.86
475 476 1.059657 CAAGTGATTTTGTCGCGCGG 61.060 55.000 31.69 11.75 42.24 6.46
476 477 2.780149 AAGTGATTTTGTCGCGCGGC 62.780 55.000 30.23 30.23 42.24 6.53
497 498 4.543736 CAGTTCGATCGCGCGCAC 62.544 66.667 32.61 20.20 37.46 5.34
537 538 2.508439 CCACGCGCCGTACAGAAT 60.508 61.111 5.73 0.00 38.32 2.40
544 545 1.865865 CGCCGTACAGAATTAGCCAT 58.134 50.000 0.00 0.00 0.00 4.40
549 550 5.238583 GCCGTACAGAATTAGCCATAGATT 58.761 41.667 0.00 0.00 0.00 2.40
581 588 5.009110 GGGAAGAATTAGCCACAGAATTAGC 59.991 44.000 0.00 0.00 0.00 3.09
621 628 1.511850 CCAGCTCACGAATGACACAA 58.488 50.000 0.00 0.00 0.00 3.33
759 766 3.878667 GGAGCCGGCCAGCCTAAT 61.879 66.667 26.15 0.00 0.00 1.73
760 767 2.193248 GAGCCGGCCAGCCTAATT 59.807 61.111 26.15 0.00 0.00 1.40
806 813 3.372554 CTCGTTCCCCTCGCCTTCC 62.373 68.421 0.00 0.00 0.00 3.46
807 814 4.814294 CGTTCCCCTCGCCTTCCG 62.814 72.222 0.00 0.00 38.61 4.30
829 836 3.181440 GCCAGTCCAGATTATCCATCCAA 60.181 47.826 0.00 0.00 31.20 3.53
830 837 4.689705 GCCAGTCCAGATTATCCATCCAAA 60.690 45.833 0.00 0.00 31.20 3.28
832 839 5.398353 CCAGTCCAGATTATCCATCCAAACT 60.398 44.000 0.00 0.00 31.20 2.66
859 870 5.391312 AATAAAGCCACAGCCAGTTTAAG 57.609 39.130 0.00 0.00 41.25 1.85
865 876 3.612479 GCCACAGCCAGTTTAAGTTCATG 60.612 47.826 0.00 0.00 0.00 3.07
867 878 4.759693 CCACAGCCAGTTTAAGTTCATGTA 59.240 41.667 0.00 0.00 0.00 2.29
869 880 6.142817 CACAGCCAGTTTAAGTTCATGTAAC 58.857 40.000 0.00 0.00 38.46 2.50
874 885 6.206829 GCCAGTTTAAGTTCATGTAACCTCTT 59.793 38.462 0.00 0.00 39.03 2.85
877 888 8.713271 CAGTTTAAGTTCATGTAACCTCTTCTC 58.287 37.037 0.00 0.00 39.03 2.87
880 891 3.519913 AGTTCATGTAACCTCTTCTCCCC 59.480 47.826 0.00 0.00 39.03 4.81
881 892 3.491766 TCATGTAACCTCTTCTCCCCT 57.508 47.619 0.00 0.00 0.00 4.79
882 893 4.620086 TCATGTAACCTCTTCTCCCCTA 57.380 45.455 0.00 0.00 0.00 3.53
883 894 4.287552 TCATGTAACCTCTTCTCCCCTAC 58.712 47.826 0.00 0.00 0.00 3.18
884 895 3.839323 TGTAACCTCTTCTCCCCTACA 57.161 47.619 0.00 0.00 0.00 2.74
885 896 4.136341 TGTAACCTCTTCTCCCCTACAA 57.864 45.455 0.00 0.00 0.00 2.41
886 897 4.495565 TGTAACCTCTTCTCCCCTACAAA 58.504 43.478 0.00 0.00 0.00 2.83
887 898 4.909088 TGTAACCTCTTCTCCCCTACAAAA 59.091 41.667 0.00 0.00 0.00 2.44
888 899 4.642466 AACCTCTTCTCCCCTACAAAAG 57.358 45.455 0.00 0.00 0.00 2.27
889 900 3.599348 ACCTCTTCTCCCCTACAAAAGT 58.401 45.455 0.00 0.00 0.00 2.66
890 901 3.981375 ACCTCTTCTCCCCTACAAAAGTT 59.019 43.478 0.00 0.00 0.00 2.66
891 902 4.202472 ACCTCTTCTCCCCTACAAAAGTTG 60.202 45.833 0.00 0.00 0.00 3.16
892 903 4.327680 CTCTTCTCCCCTACAAAAGTTGG 58.672 47.826 0.00 0.00 34.12 3.77
893 904 2.579410 TCTCCCCTACAAAAGTTGGC 57.421 50.000 0.00 0.00 34.12 4.52
894 905 2.062636 TCTCCCCTACAAAAGTTGGCT 58.937 47.619 0.00 0.00 34.12 4.75
895 906 3.253220 TCTCCCCTACAAAAGTTGGCTA 58.747 45.455 0.00 0.00 34.12 3.93
896 907 3.653836 TCTCCCCTACAAAAGTTGGCTAA 59.346 43.478 0.00 0.00 34.12 3.09
897 908 3.756963 CTCCCCTACAAAAGTTGGCTAAC 59.243 47.826 4.51 4.51 37.06 2.34
898 909 3.138653 TCCCCTACAAAAGTTGGCTAACA 59.861 43.478 15.86 0.00 39.30 2.41
899 910 3.506067 CCCCTACAAAAGTTGGCTAACAG 59.494 47.826 15.86 2.39 39.30 3.16
900 911 4.142038 CCCTACAAAAGTTGGCTAACAGT 58.858 43.478 15.86 10.02 39.30 3.55
901 912 4.583073 CCCTACAAAAGTTGGCTAACAGTT 59.417 41.667 15.86 5.93 39.30 3.16
902 913 5.278315 CCCTACAAAAGTTGGCTAACAGTTC 60.278 44.000 15.86 0.00 39.30 3.01
903 914 4.649088 ACAAAAGTTGGCTAACAGTTCC 57.351 40.909 15.86 0.00 39.30 3.62
904 915 4.278310 ACAAAAGTTGGCTAACAGTTCCT 58.722 39.130 15.86 0.00 39.30 3.36
905 916 4.709886 ACAAAAGTTGGCTAACAGTTCCTT 59.290 37.500 15.86 0.00 39.30 3.36
906 917 5.186992 ACAAAAGTTGGCTAACAGTTCCTTT 59.813 36.000 15.86 2.96 39.30 3.11
907 918 4.918810 AAGTTGGCTAACAGTTCCTTTG 57.081 40.909 15.86 0.00 39.30 2.77
908 919 2.623416 AGTTGGCTAACAGTTCCTTTGC 59.377 45.455 15.86 0.00 39.30 3.68
909 920 2.356665 TGGCTAACAGTTCCTTTGCA 57.643 45.000 0.00 0.00 0.00 4.08
910 921 2.660572 TGGCTAACAGTTCCTTTGCAA 58.339 42.857 0.00 0.00 0.00 4.08
911 922 2.622942 TGGCTAACAGTTCCTTTGCAAG 59.377 45.455 0.00 0.00 0.00 4.01
912 923 7.956127 GTTGGCTAACAGTTCCTTTGCAAGG 62.956 48.000 8.23 0.68 42.05 3.61
953 970 1.153549 GCTCCCGGTAGCTGTTCTG 60.154 63.158 12.49 0.00 39.50 3.02
996 1013 2.871253 GCCCACCTTGCCAAACCAG 61.871 63.158 0.00 0.00 0.00 4.00
1138 1155 1.002274 AAGATCCGGCTCCAGGAGT 59.998 57.895 18.37 0.00 41.66 3.85
1192 1221 2.856032 CGCGCTCTCTTGTGTTGG 59.144 61.111 5.56 0.00 0.00 3.77
1196 1225 1.423395 CGCTCTCTTGTGTTGGTCTC 58.577 55.000 0.00 0.00 0.00 3.36
1218 1247 2.354821 ACAGGAACTTGTTTTGCTCGTC 59.645 45.455 0.00 0.00 34.60 4.20
1229 1258 0.527600 TTGCTCGTCCGATCGATTGG 60.528 55.000 23.90 23.90 39.12 3.16
1238 1267 1.542547 CCGATCGATTGGTTTAGGGGG 60.543 57.143 21.95 0.00 0.00 5.40
1418 1455 4.742659 CGCCTTGCTTAGCTTTTGTTTTTA 59.257 37.500 5.60 0.00 0.00 1.52
1452 1492 5.924254 TGTTTACTTGGTCTCAACATAGTCG 59.076 40.000 0.00 0.00 0.00 4.18
1491 1531 3.001330 GCTCGTGAAAGGTGTACATATGC 59.999 47.826 1.58 0.00 0.00 3.14
1495 1535 5.350365 TCGTGAAAGGTGTACATATGCTTTC 59.650 40.000 18.43 18.43 0.00 2.62
1497 1537 6.546395 GTGAAAGGTGTACATATGCTTTCTG 58.454 40.000 22.43 0.00 32.53 3.02
1498 1538 5.647658 TGAAAGGTGTACATATGCTTTCTGG 59.352 40.000 22.43 0.00 32.53 3.86
1499 1539 3.545703 AGGTGTACATATGCTTTCTGGC 58.454 45.455 1.58 0.00 0.00 4.85
1501 1541 3.947834 GGTGTACATATGCTTTCTGGCTT 59.052 43.478 1.58 0.00 0.00 4.35
1502 1542 4.035675 GGTGTACATATGCTTTCTGGCTTC 59.964 45.833 1.58 0.00 0.00 3.86
1504 1544 4.877823 TGTACATATGCTTTCTGGCTTCTG 59.122 41.667 1.58 0.00 0.00 3.02
1538 1578 0.828022 TGAATAATGCGGACGGAGGT 59.172 50.000 0.00 0.00 0.00 3.85
1539 1579 1.217882 GAATAATGCGGACGGAGGTG 58.782 55.000 0.00 0.00 0.00 4.00
1547 1587 2.183300 GACGGAGGTGCGCATGTA 59.817 61.111 15.91 0.00 0.00 2.29
1548 1588 1.878522 GACGGAGGTGCGCATGTAG 60.879 63.158 15.91 7.36 0.00 2.74
1549 1589 3.264897 CGGAGGTGCGCATGTAGC 61.265 66.667 15.91 0.00 40.87 3.58
1551 1591 2.176273 GGAGGTGCGCATGTAGCTG 61.176 63.158 15.91 0.00 38.72 4.24
1552 1592 2.817423 GAGGTGCGCATGTAGCTGC 61.817 63.158 15.91 0.00 38.72 5.25
1568 1613 0.817654 CTGCATACTCCACCGTCTGA 59.182 55.000 0.00 0.00 0.00 3.27
1580 1791 0.803768 CCGTCTGATTCGCTGGACAG 60.804 60.000 0.00 0.00 0.00 3.51
1595 1806 1.467713 GGACAGCAGCAGAGTACGTAC 60.468 57.143 18.10 18.10 0.00 3.67
1621 1832 1.067142 TCTTTTCTGGTGATCCGGTCG 60.067 52.381 0.00 0.00 40.77 4.79
1629 1840 2.498481 TGGTGATCCGGTCGTTATTTCT 59.502 45.455 0.00 0.00 36.30 2.52
1632 1843 3.797256 GTGATCCGGTCGTTATTTCTCAG 59.203 47.826 0.00 0.00 0.00 3.35
1634 1845 3.947910 TCCGGTCGTTATTTCTCAGTT 57.052 42.857 0.00 0.00 0.00 3.16
1690 1901 1.078143 GCTGGGGGCTAGTGAGTTG 60.078 63.158 0.00 0.00 38.06 3.16
1691 1902 1.553690 GCTGGGGGCTAGTGAGTTGA 61.554 60.000 0.00 0.00 38.06 3.18
1692 1903 0.539051 CTGGGGGCTAGTGAGTTGAG 59.461 60.000 0.00 0.00 0.00 3.02
1693 1904 0.178903 TGGGGGCTAGTGAGTTGAGT 60.179 55.000 0.00 0.00 0.00 3.41
1694 1905 0.250513 GGGGGCTAGTGAGTTGAGTG 59.749 60.000 0.00 0.00 0.00 3.51
1695 1906 0.977395 GGGGCTAGTGAGTTGAGTGT 59.023 55.000 0.00 0.00 0.00 3.55
1696 1907 1.348036 GGGGCTAGTGAGTTGAGTGTT 59.652 52.381 0.00 0.00 0.00 3.32
1722 1933 2.849318 AGAGAAGGGGAAAGGGAATGAG 59.151 50.000 0.00 0.00 0.00 2.90
1723 1934 1.286257 AGAAGGGGAAAGGGAATGAGC 59.714 52.381 0.00 0.00 0.00 4.26
1739 1950 1.134521 TGAGCGTTTCCAAGTGAGTGT 60.135 47.619 0.00 0.00 0.00 3.55
1744 1955 3.311596 GCGTTTCCAAGTGAGTGTTTAGT 59.688 43.478 0.00 0.00 0.00 2.24
1745 1956 4.508861 GCGTTTCCAAGTGAGTGTTTAGTA 59.491 41.667 0.00 0.00 0.00 1.82
1855 2066 8.246180 AGAAAGTAATGTGCCATGTGAATTAAG 58.754 33.333 0.00 0.00 0.00 1.85
1884 2203 4.507342 AGGGCAGGAAAGAGATATATGGT 58.493 43.478 0.00 0.00 0.00 3.55
1912 2231 4.267536 AGCTCCTTAATTACGTTTTCCCC 58.732 43.478 0.00 0.00 0.00 4.81
1914 2233 4.703575 GCTCCTTAATTACGTTTTCCCCTT 59.296 41.667 0.00 0.00 0.00 3.95
1915 2234 5.163683 GCTCCTTAATTACGTTTTCCCCTTC 60.164 44.000 0.00 0.00 0.00 3.46
1916 2235 6.130692 TCCTTAATTACGTTTTCCCCTTCT 57.869 37.500 0.00 0.00 0.00 2.85
1917 2236 6.175471 TCCTTAATTACGTTTTCCCCTTCTC 58.825 40.000 0.00 0.00 0.00 2.87
1918 2237 5.356190 CCTTAATTACGTTTTCCCCTTCTCC 59.644 44.000 0.00 0.00 0.00 3.71
1926 2245 0.845102 TTCCCCTTCTCCCCTCAACC 60.845 60.000 0.00 0.00 0.00 3.77
1931 2250 1.554822 CCTTCTCCCCTCAACCCACTA 60.555 57.143 0.00 0.00 0.00 2.74
1949 2268 0.544833 TAGCCCCCACAAACGAGGTA 60.545 55.000 0.00 0.00 0.00 3.08
2081 3695 7.569599 AAAAGGAGGAATTCTAGAAGTACCA 57.430 36.000 11.50 0.00 0.00 3.25
2084 3698 6.133356 AGGAGGAATTCTAGAAGTACCAGAG 58.867 44.000 11.50 0.00 0.00 3.35
2087 3701 6.737608 AGGAATTCTAGAAGTACCAGAGAGT 58.262 40.000 11.50 0.00 0.00 3.24
2088 3702 7.186268 AGGAATTCTAGAAGTACCAGAGAGTT 58.814 38.462 11.50 0.00 0.00 3.01
2127 3741 2.760374 GTATCTCGGCCCATGAAAGAG 58.240 52.381 0.00 0.00 0.00 2.85
2129 3743 1.821332 CTCGGCCCATGAAAGAGGC 60.821 63.158 0.00 0.00 46.37 4.70
2143 3757 3.542969 AAGAGGCCCCACACTAAAAAT 57.457 42.857 0.00 0.00 0.00 1.82
2179 3793 1.214305 TAAGGCCCATGAACCCAGCT 61.214 55.000 0.00 0.00 0.00 4.24
2181 3795 1.152881 GGCCCATGAACCCAGCTAG 60.153 63.158 0.00 0.00 0.00 3.42
2183 3797 0.464554 GCCCATGAACCCAGCTAGAC 60.465 60.000 0.00 0.00 0.00 2.59
2200 3814 5.940470 AGCTAGACAGTCCATAACCAAAAAG 59.060 40.000 0.00 0.00 0.00 2.27
2243 3857 1.226746 GTGCAGTCGCTAAACAACCT 58.773 50.000 0.00 0.00 39.64 3.50
2247 3861 2.755650 CAGTCGCTAAACAACCTGAGT 58.244 47.619 0.00 0.00 0.00 3.41
2248 3862 3.131396 CAGTCGCTAAACAACCTGAGTT 58.869 45.455 0.00 0.00 36.33 3.01
2249 3863 6.591441 GCAGTCGCTAAACAACCTGAGTTG 62.591 50.000 4.45 4.45 46.26 3.16
2256 3870 2.724520 CAACCTGAGTTGCCTTGCT 58.275 52.632 0.00 0.00 46.43 3.91
2257 3871 0.595095 CAACCTGAGTTGCCTTGCTC 59.405 55.000 0.00 0.00 46.43 4.26
2258 3872 0.538287 AACCTGAGTTGCCTTGCTCC 60.538 55.000 0.00 0.00 33.97 4.70
2259 3873 1.676967 CCTGAGTTGCCTTGCTCCC 60.677 63.158 0.00 0.00 0.00 4.30
2260 3874 1.676967 CTGAGTTGCCTTGCTCCCC 60.677 63.158 0.00 0.00 0.00 4.81
2261 3875 2.416107 CTGAGTTGCCTTGCTCCCCA 62.416 60.000 0.00 0.00 0.00 4.96
2262 3876 1.000396 GAGTTGCCTTGCTCCCCAT 60.000 57.895 0.00 0.00 0.00 4.00
2263 3877 1.000396 AGTTGCCTTGCTCCCCATC 60.000 57.895 0.00 0.00 0.00 3.51
2264 3878 1.304381 GTTGCCTTGCTCCCCATCA 60.304 57.895 0.00 0.00 0.00 3.07
2265 3879 1.304381 TTGCCTTGCTCCCCATCAC 60.304 57.895 0.00 0.00 0.00 3.06
2266 3880 2.079088 TTGCCTTGCTCCCCATCACA 62.079 55.000 0.00 0.00 0.00 3.58
2267 3881 1.076485 GCCTTGCTCCCCATCACAT 60.076 57.895 0.00 0.00 0.00 3.21
2268 3882 1.389609 GCCTTGCTCCCCATCACATG 61.390 60.000 0.00 0.00 0.00 3.21
2269 3883 0.033796 CCTTGCTCCCCATCACATGT 60.034 55.000 0.00 0.00 0.00 3.21
2270 3884 1.617804 CCTTGCTCCCCATCACATGTT 60.618 52.381 0.00 0.00 0.00 2.71
2271 3885 2.173519 CTTGCTCCCCATCACATGTTT 58.826 47.619 0.00 0.00 0.00 2.83
2272 3886 3.355378 CTTGCTCCCCATCACATGTTTA 58.645 45.455 0.00 0.00 0.00 2.01
2273 3887 3.668141 TGCTCCCCATCACATGTTTAT 57.332 42.857 0.00 0.00 0.00 1.40
2274 3888 4.787135 TGCTCCCCATCACATGTTTATA 57.213 40.909 0.00 0.00 0.00 0.98
2275 3889 5.323382 TGCTCCCCATCACATGTTTATAT 57.677 39.130 0.00 0.00 0.00 0.86
2276 3890 5.704354 TGCTCCCCATCACATGTTTATATT 58.296 37.500 0.00 0.00 0.00 1.28
2277 3891 6.135454 TGCTCCCCATCACATGTTTATATTT 58.865 36.000 0.00 0.00 0.00 1.40
2278 3892 6.610830 TGCTCCCCATCACATGTTTATATTTT 59.389 34.615 0.00 0.00 0.00 1.82
2279 3893 7.125507 TGCTCCCCATCACATGTTTATATTTTT 59.874 33.333 0.00 0.00 0.00 1.94
2280 3894 7.439056 GCTCCCCATCACATGTTTATATTTTTG 59.561 37.037 0.00 0.00 0.00 2.44
2281 3895 8.601047 TCCCCATCACATGTTTATATTTTTGA 57.399 30.769 0.00 0.00 0.00 2.69
2282 3896 8.474025 TCCCCATCACATGTTTATATTTTTGAC 58.526 33.333 0.00 0.00 0.00 3.18
2283 3897 7.710475 CCCCATCACATGTTTATATTTTTGACC 59.290 37.037 0.00 0.00 0.00 4.02
2284 3898 7.710475 CCCATCACATGTTTATATTTTTGACCC 59.290 37.037 0.00 0.00 0.00 4.46
2285 3899 7.710475 CCATCACATGTTTATATTTTTGACCCC 59.290 37.037 0.00 0.00 0.00 4.95
2286 3900 7.176589 TCACATGTTTATATTTTTGACCCCC 57.823 36.000 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.372459 TCTTGTATTTATAACGGGATGCATACT 58.628 33.333 9.27 0.00 0.00 2.12
1 2 8.542497 TCTTGTATTTATAACGGGATGCATAC 57.458 34.615 0.00 0.00 0.00 2.39
2 3 9.378551 GATCTTGTATTTATAACGGGATGCATA 57.621 33.333 0.00 0.00 0.00 3.14
3 4 7.882791 TGATCTTGTATTTATAACGGGATGCAT 59.117 33.333 0.00 0.00 0.00 3.96
4 5 7.220740 TGATCTTGTATTTATAACGGGATGCA 58.779 34.615 0.00 0.00 0.00 3.96
5 6 7.667043 TGATCTTGTATTTATAACGGGATGC 57.333 36.000 0.00 0.00 0.00 3.91
6 7 8.177663 GCATGATCTTGTATTTATAACGGGATG 58.822 37.037 10.05 0.00 0.00 3.51
7 8 7.064609 CGCATGATCTTGTATTTATAACGGGAT 59.935 37.037 10.05 0.00 0.00 3.85
8 9 6.367695 CGCATGATCTTGTATTTATAACGGGA 59.632 38.462 10.05 0.00 0.00 5.14
9 10 6.534059 CGCATGATCTTGTATTTATAACGGG 58.466 40.000 10.05 0.00 0.00 5.28
10 11 6.015504 GCGCATGATCTTGTATTTATAACGG 58.984 40.000 0.30 0.00 0.00 4.44
11 12 6.821482 AGCGCATGATCTTGTATTTATAACG 58.179 36.000 11.47 3.52 0.00 3.18
12 13 7.535258 CCAAGCGCATGATCTTGTATTTATAAC 59.465 37.037 15.31 0.00 38.33 1.89
13 14 7.228507 ACCAAGCGCATGATCTTGTATTTATAA 59.771 33.333 15.31 0.00 38.33 0.98
14 15 6.710295 ACCAAGCGCATGATCTTGTATTTATA 59.290 34.615 15.31 0.00 38.33 0.98
15 16 5.532406 ACCAAGCGCATGATCTTGTATTTAT 59.468 36.000 15.31 0.00 38.33 1.40
16 17 4.881273 ACCAAGCGCATGATCTTGTATTTA 59.119 37.500 15.31 0.00 38.33 1.40
17 18 3.696051 ACCAAGCGCATGATCTTGTATTT 59.304 39.130 15.31 0.00 38.33 1.40
18 19 3.065786 CACCAAGCGCATGATCTTGTATT 59.934 43.478 15.31 0.00 38.33 1.89
19 20 2.615447 CACCAAGCGCATGATCTTGTAT 59.385 45.455 15.31 9.54 38.33 2.29
20 21 2.009051 CACCAAGCGCATGATCTTGTA 58.991 47.619 15.31 0.00 38.33 2.41
21 22 0.806868 CACCAAGCGCATGATCTTGT 59.193 50.000 15.31 0.00 38.33 3.16
22 23 0.524816 GCACCAAGCGCATGATCTTG 60.525 55.000 15.31 16.06 39.38 3.02
23 24 1.805254 GCACCAAGCGCATGATCTT 59.195 52.632 15.31 0.00 0.00 2.40
24 25 3.506108 GCACCAAGCGCATGATCT 58.494 55.556 15.31 0.00 0.00 2.75
33 34 2.337532 CAAGCCACAGCACCAAGC 59.662 61.111 0.00 0.00 43.56 4.01
34 35 2.138656 GAGCAAGCCACAGCACCAAG 62.139 60.000 0.00 0.00 43.56 3.61
35 36 2.123769 AGCAAGCCACAGCACCAA 60.124 55.556 0.00 0.00 43.56 3.67
36 37 2.595463 GAGCAAGCCACAGCACCA 60.595 61.111 0.00 0.00 43.56 4.17
37 38 3.730761 CGAGCAAGCCACAGCACC 61.731 66.667 0.00 0.00 43.56 5.01
38 39 2.666190 TCGAGCAAGCCACAGCAC 60.666 61.111 0.00 0.00 43.56 4.40
39 40 2.357881 CTCGAGCAAGCCACAGCA 60.358 61.111 0.00 0.00 43.56 4.41
40 41 3.797546 GCTCGAGCAAGCCACAGC 61.798 66.667 31.91 0.76 41.59 4.40
50 51 2.558313 GCACAAACCTGCTCGAGC 59.442 61.111 30.42 30.42 42.50 5.03
51 52 1.597854 TGGCACAAACCTGCTCGAG 60.598 57.895 8.45 8.45 37.33 4.04
52 53 1.891919 GTGGCACAAACCTGCTCGA 60.892 57.895 13.86 0.00 44.16 4.04
53 54 1.893808 AGTGGCACAAACCTGCTCG 60.894 57.895 21.41 0.00 44.16 5.03
54 55 1.103398 ACAGTGGCACAAACCTGCTC 61.103 55.000 21.41 0.00 44.16 4.26
55 56 1.076777 ACAGTGGCACAAACCTGCT 60.077 52.632 21.41 0.00 44.16 4.24
56 57 1.066257 CACAGTGGCACAAACCTGC 59.934 57.895 21.41 0.00 44.16 4.85
57 58 0.101040 CACACAGTGGCACAAACCTG 59.899 55.000 21.41 11.29 44.16 4.00
58 59 1.666209 GCACACAGTGGCACAAACCT 61.666 55.000 21.41 0.00 44.16 3.50
59 60 1.226945 GCACACAGTGGCACAAACC 60.227 57.895 21.41 0.00 44.16 3.27
60 61 1.586042 CGCACACAGTGGCACAAAC 60.586 57.895 21.41 1.85 44.16 2.93
61 62 2.769539 CCGCACACAGTGGCACAAA 61.770 57.895 21.41 0.00 44.16 2.83
62 63 3.208383 CCGCACACAGTGGCACAA 61.208 61.111 21.41 0.00 44.16 3.33
64 65 4.927782 TCCCGCACACAGTGGCAC 62.928 66.667 10.29 10.29 46.92 5.01
65 66 3.899981 GATCCCGCACACAGTGGCA 62.900 63.158 5.31 0.00 46.92 4.92
66 67 3.127533 GATCCCGCACACAGTGGC 61.128 66.667 5.31 4.77 46.92 5.01
68 69 0.740868 ATTCGATCCCGCACACAGTG 60.741 55.000 0.00 0.00 36.51 3.66
69 70 0.460284 GATTCGATCCCGCACACAGT 60.460 55.000 0.00 0.00 35.37 3.55
70 71 1.154205 GGATTCGATCCCGCACACAG 61.154 60.000 0.00 0.00 43.88 3.66
71 72 1.153449 GGATTCGATCCCGCACACA 60.153 57.895 0.00 0.00 43.88 3.72
72 73 3.719214 GGATTCGATCCCGCACAC 58.281 61.111 0.00 0.00 43.88 3.82
80 81 1.072159 CAGCCCCTGGGATTCGATC 59.928 63.158 16.20 0.00 37.50 3.69
81 82 3.125376 GCAGCCCCTGGGATTCGAT 62.125 63.158 16.20 0.00 37.50 3.59
82 83 3.797353 GCAGCCCCTGGGATTCGA 61.797 66.667 16.20 0.00 37.50 3.71
112 113 3.568853 TGGGCCGAGTAAAAATCGAAAAA 59.431 39.130 0.00 0.00 42.76 1.94
113 114 3.058085 GTGGGCCGAGTAAAAATCGAAAA 60.058 43.478 0.00 0.00 42.76 2.29
114 115 2.485038 GTGGGCCGAGTAAAAATCGAAA 59.515 45.455 0.00 0.00 42.76 3.46
115 116 2.078392 GTGGGCCGAGTAAAAATCGAA 58.922 47.619 0.00 0.00 42.76 3.71
116 117 1.276989 AGTGGGCCGAGTAAAAATCGA 59.723 47.619 0.00 0.00 42.76 3.59
117 118 1.396996 CAGTGGGCCGAGTAAAAATCG 59.603 52.381 0.00 0.00 39.86 3.34
118 119 2.418976 GTCAGTGGGCCGAGTAAAAATC 59.581 50.000 0.00 0.00 0.00 2.17
119 120 2.224670 TGTCAGTGGGCCGAGTAAAAAT 60.225 45.455 0.00 0.00 0.00 1.82
120 121 1.141254 TGTCAGTGGGCCGAGTAAAAA 59.859 47.619 0.00 0.00 0.00 1.94
121 122 0.759959 TGTCAGTGGGCCGAGTAAAA 59.240 50.000 0.00 0.00 0.00 1.52
122 123 0.981183 ATGTCAGTGGGCCGAGTAAA 59.019 50.000 0.00 0.00 0.00 2.01
123 124 1.855295 TATGTCAGTGGGCCGAGTAA 58.145 50.000 0.00 0.00 0.00 2.24
124 125 1.686587 CATATGTCAGTGGGCCGAGTA 59.313 52.381 0.00 0.00 0.00 2.59
125 126 0.465705 CATATGTCAGTGGGCCGAGT 59.534 55.000 0.00 0.00 0.00 4.18
126 127 0.250038 CCATATGTCAGTGGGCCGAG 60.250 60.000 0.00 0.00 0.00 4.63
127 128 1.829456 CCATATGTCAGTGGGCCGA 59.171 57.895 0.00 0.00 0.00 5.54
128 129 4.462394 CCATATGTCAGTGGGCCG 57.538 61.111 0.00 0.00 0.00 6.13
132 133 0.532862 GTCGGCCCATATGTCAGTGG 60.533 60.000 0.00 0.00 35.22 4.00
133 134 0.875908 CGTCGGCCCATATGTCAGTG 60.876 60.000 0.00 0.00 0.00 3.66
134 135 1.327690 ACGTCGGCCCATATGTCAGT 61.328 55.000 0.00 0.00 0.00 3.41
135 136 0.597637 GACGTCGGCCCATATGTCAG 60.598 60.000 0.00 0.00 32.88 3.51
136 137 1.324005 TGACGTCGGCCCATATGTCA 61.324 55.000 11.62 15.12 38.87 3.58
137 138 0.874607 GTGACGTCGGCCCATATGTC 60.875 60.000 11.62 11.18 33.18 3.06
138 139 1.143183 GTGACGTCGGCCCATATGT 59.857 57.895 11.62 0.00 0.00 2.29
139 140 0.875908 CTGTGACGTCGGCCCATATG 60.876 60.000 11.62 0.00 0.00 1.78
140 141 1.441729 CTGTGACGTCGGCCCATAT 59.558 57.895 11.62 0.00 0.00 1.78
141 142 2.889617 CTGTGACGTCGGCCCATA 59.110 61.111 11.62 0.00 0.00 2.74
142 143 4.760047 GCTGTGACGTCGGCCCAT 62.760 66.667 11.62 0.00 34.02 4.00
148 149 4.640855 ACGTGGGCTGTGACGTCG 62.641 66.667 11.62 0.00 45.36 5.12
151 152 0.599204 ACTAAACGTGGGCTGTGACG 60.599 55.000 0.00 0.00 41.41 4.35
152 153 1.529865 GAACTAAACGTGGGCTGTGAC 59.470 52.381 0.00 0.00 0.00 3.67
153 154 1.541670 GGAACTAAACGTGGGCTGTGA 60.542 52.381 0.00 0.00 0.00 3.58
154 155 0.872388 GGAACTAAACGTGGGCTGTG 59.128 55.000 0.00 0.00 0.00 3.66
155 156 0.601841 CGGAACTAAACGTGGGCTGT 60.602 55.000 0.00 0.00 0.00 4.40
156 157 1.296056 CCGGAACTAAACGTGGGCTG 61.296 60.000 0.00 0.00 0.00 4.85
157 158 1.004200 CCGGAACTAAACGTGGGCT 60.004 57.895 0.00 0.00 0.00 5.19
158 159 1.301953 ACCGGAACTAAACGTGGGC 60.302 57.895 9.46 0.00 0.00 5.36
159 160 0.952010 CCACCGGAACTAAACGTGGG 60.952 60.000 9.46 0.00 31.96 4.61
160 161 1.571215 GCCACCGGAACTAAACGTGG 61.571 60.000 9.46 2.30 35.71 4.94
161 162 0.601841 AGCCACCGGAACTAAACGTG 60.602 55.000 9.46 0.00 0.00 4.49
162 163 0.107268 AAGCCACCGGAACTAAACGT 59.893 50.000 9.46 0.00 0.00 3.99
163 164 0.515564 CAAGCCACCGGAACTAAACG 59.484 55.000 9.46 0.00 0.00 3.60
164 165 0.240145 GCAAGCCACCGGAACTAAAC 59.760 55.000 9.46 0.00 0.00 2.01
165 166 1.231958 CGCAAGCCACCGGAACTAAA 61.232 55.000 9.46 0.00 0.00 1.85
166 167 1.669760 CGCAAGCCACCGGAACTAA 60.670 57.895 9.46 0.00 0.00 2.24
167 168 2.047655 CGCAAGCCACCGGAACTA 60.048 61.111 9.46 0.00 0.00 2.24
168 169 3.767630 AACGCAAGCCACCGGAACT 62.768 57.895 9.46 0.00 45.62 3.01
169 170 2.344521 AAAACGCAAGCCACCGGAAC 62.345 55.000 9.46 0.00 45.62 3.62
170 171 1.668101 AAAAACGCAAGCCACCGGAA 61.668 50.000 9.46 0.00 45.62 4.30
171 172 2.122167 AAAAACGCAAGCCACCGGA 61.122 52.632 9.46 0.00 45.62 5.14
172 173 2.415426 AAAAACGCAAGCCACCGG 59.585 55.556 0.00 0.00 45.62 5.28
186 187 0.882927 CACGTGGGCCGAGAGAAAAA 60.883 55.000 7.95 0.00 40.70 1.94
187 188 1.301401 CACGTGGGCCGAGAGAAAA 60.301 57.895 7.95 0.00 40.70 2.29
188 189 2.342279 CACGTGGGCCGAGAGAAA 59.658 61.111 7.95 0.00 40.70 2.52
189 190 2.915659 ACACGTGGGCCGAGAGAA 60.916 61.111 21.57 0.00 40.70 2.87
190 191 3.371063 GACACGTGGGCCGAGAGA 61.371 66.667 21.57 0.00 40.70 3.10
191 192 3.343788 GAGACACGTGGGCCGAGAG 62.344 68.421 21.57 0.00 40.70 3.20
192 193 3.371063 GAGACACGTGGGCCGAGA 61.371 66.667 21.57 0.00 40.70 4.04
193 194 4.436998 GGAGACACGTGGGCCGAG 62.437 72.222 21.57 0.00 40.70 4.63
194 195 3.572447 TAGGAGACACGTGGGCCGA 62.572 63.158 21.57 11.06 40.70 5.54
195 196 3.066190 TAGGAGACACGTGGGCCG 61.066 66.667 21.57 0.00 44.03 6.13
196 197 2.577593 GTAGGAGACACGTGGGCC 59.422 66.667 21.57 17.01 0.00 5.80
197 198 2.181021 CGTAGGAGACACGTGGGC 59.819 66.667 21.57 11.55 34.74 5.36
198 199 2.149803 TTGCGTAGGAGACACGTGGG 62.150 60.000 21.57 0.00 41.41 4.61
199 200 0.319211 TTTGCGTAGGAGACACGTGG 60.319 55.000 21.57 1.66 41.41 4.94
200 201 1.710013 ATTTGCGTAGGAGACACGTG 58.290 50.000 15.48 15.48 41.41 4.49
201 202 2.730090 CGTATTTGCGTAGGAGACACGT 60.730 50.000 0.00 0.00 41.41 4.49
202 203 1.844357 CGTATTTGCGTAGGAGACACG 59.156 52.381 0.00 0.00 42.24 4.49
203 204 3.106672 CTCGTATTTGCGTAGGAGACAC 58.893 50.000 7.22 0.00 38.31 3.67
204 205 3.011818 TCTCGTATTTGCGTAGGAGACA 58.988 45.455 10.20 0.00 39.40 3.41
205 206 3.687572 TCTCGTATTTGCGTAGGAGAC 57.312 47.619 10.20 0.00 39.40 3.36
206 207 4.084171 CGTATCTCGTATTTGCGTAGGAGA 60.084 45.833 14.31 14.31 44.74 3.71
207 208 4.149617 CGTATCTCGTATTTGCGTAGGAG 58.850 47.826 6.85 6.85 37.73 3.69
208 209 4.137849 CGTATCTCGTATTTGCGTAGGA 57.862 45.455 0.00 0.00 34.52 2.94
229 230 1.927174 CTGGCTCTACACGTTGCATAC 59.073 52.381 0.00 0.00 0.00 2.39
230 231 1.134818 CCTGGCTCTACACGTTGCATA 60.135 52.381 0.00 0.00 0.00 3.14
231 232 0.391661 CCTGGCTCTACACGTTGCAT 60.392 55.000 0.00 0.00 0.00 3.96
232 233 1.005037 CCTGGCTCTACACGTTGCA 60.005 57.895 0.00 0.00 0.00 4.08
233 234 1.014564 GTCCTGGCTCTACACGTTGC 61.015 60.000 0.00 0.00 0.00 4.17
234 235 0.603569 AGTCCTGGCTCTACACGTTG 59.396 55.000 0.00 0.00 0.00 4.10
235 236 0.603569 CAGTCCTGGCTCTACACGTT 59.396 55.000 0.00 0.00 0.00 3.99
236 237 0.539901 ACAGTCCTGGCTCTACACGT 60.540 55.000 0.00 0.00 34.19 4.49
237 238 0.603569 AACAGTCCTGGCTCTACACG 59.396 55.000 0.00 0.00 34.19 4.49
238 239 1.344763 ACAACAGTCCTGGCTCTACAC 59.655 52.381 0.00 0.00 34.19 2.90
239 240 1.717032 ACAACAGTCCTGGCTCTACA 58.283 50.000 0.00 0.00 34.19 2.74
240 241 2.841442 AACAACAGTCCTGGCTCTAC 57.159 50.000 0.00 0.00 34.19 2.59
241 242 2.703536 TGAAACAACAGTCCTGGCTCTA 59.296 45.455 0.00 0.00 34.19 2.43
242 243 1.490490 TGAAACAACAGTCCTGGCTCT 59.510 47.619 0.00 0.00 34.19 4.09
243 244 1.967319 TGAAACAACAGTCCTGGCTC 58.033 50.000 0.00 0.00 34.19 4.70
244 245 2.024414 GTTGAAACAACAGTCCTGGCT 58.976 47.619 9.32 0.00 34.19 4.75
245 246 1.067060 GGTTGAAACAACAGTCCTGGC 59.933 52.381 14.89 0.00 34.19 4.85
246 247 2.618709 GAGGTTGAAACAACAGTCCTGG 59.381 50.000 14.89 0.00 34.19 4.45
247 248 3.278574 TGAGGTTGAAACAACAGTCCTG 58.721 45.455 14.89 0.00 0.00 3.86
248 249 3.545703 CTGAGGTTGAAACAACAGTCCT 58.454 45.455 14.89 4.47 32.82 3.85
249 250 2.618709 CCTGAGGTTGAAACAACAGTCC 59.381 50.000 14.89 0.06 34.35 3.85
250 251 2.618709 CCCTGAGGTTGAAACAACAGTC 59.381 50.000 14.89 11.29 34.35 3.51
251 252 2.241176 TCCCTGAGGTTGAAACAACAGT 59.759 45.455 14.89 3.38 34.35 3.55
252 253 2.618709 GTCCCTGAGGTTGAAACAACAG 59.381 50.000 14.89 9.72 35.21 3.16
253 254 2.650322 GTCCCTGAGGTTGAAACAACA 58.350 47.619 14.89 2.03 0.00 3.33
254 255 1.954382 GGTCCCTGAGGTTGAAACAAC 59.046 52.381 0.00 6.13 0.00 3.32
255 256 1.476110 CGGTCCCTGAGGTTGAAACAA 60.476 52.381 0.00 0.00 0.00 2.83
256 257 0.107831 CGGTCCCTGAGGTTGAAACA 59.892 55.000 0.00 0.00 0.00 2.83
257 258 0.108019 ACGGTCCCTGAGGTTGAAAC 59.892 55.000 0.00 0.00 0.00 2.78
258 259 1.719529 TACGGTCCCTGAGGTTGAAA 58.280 50.000 0.00 0.00 0.00 2.69
259 260 1.946984 ATACGGTCCCTGAGGTTGAA 58.053 50.000 0.00 0.00 0.00 2.69
260 261 1.946984 AATACGGTCCCTGAGGTTGA 58.053 50.000 0.00 0.00 0.00 3.18
261 262 3.197116 AGTTAATACGGTCCCTGAGGTTG 59.803 47.826 0.00 0.00 0.00 3.77
262 263 3.447950 AGTTAATACGGTCCCTGAGGTT 58.552 45.455 0.00 0.00 0.00 3.50
263 264 3.111741 AGTTAATACGGTCCCTGAGGT 57.888 47.619 0.00 0.00 0.00 3.85
264 265 8.763984 ATATATAGTTAATACGGTCCCTGAGG 57.236 38.462 0.00 0.00 0.00 3.86
280 281 8.098912 GGTCCCGGTACATGAAAATATATAGTT 58.901 37.037 0.00 0.00 0.00 2.24
281 282 7.578189 CGGTCCCGGTACATGAAAATATATAGT 60.578 40.741 0.00 0.00 35.56 2.12
282 283 6.755141 CGGTCCCGGTACATGAAAATATATAG 59.245 42.308 0.00 0.00 35.56 1.31
283 284 6.211184 ACGGTCCCGGTACATGAAAATATATA 59.789 38.462 10.91 0.00 44.69 0.86
284 285 5.012354 ACGGTCCCGGTACATGAAAATATAT 59.988 40.000 10.91 0.00 44.69 0.86
285 286 4.344679 ACGGTCCCGGTACATGAAAATATA 59.655 41.667 10.91 0.00 44.69 0.86
286 287 3.135167 ACGGTCCCGGTACATGAAAATAT 59.865 43.478 10.91 0.00 44.69 1.28
287 288 2.500910 ACGGTCCCGGTACATGAAAATA 59.499 45.455 10.91 0.00 44.69 1.40
288 289 1.279846 ACGGTCCCGGTACATGAAAAT 59.720 47.619 10.91 0.00 44.69 1.82
289 290 0.686224 ACGGTCCCGGTACATGAAAA 59.314 50.000 10.91 0.00 44.69 2.29
290 291 1.554836 TACGGTCCCGGTACATGAAA 58.445 50.000 10.91 0.00 44.69 2.69
291 292 1.779221 ATACGGTCCCGGTACATGAA 58.221 50.000 10.91 0.00 44.69 2.57
292 293 1.409790 CAATACGGTCCCGGTACATGA 59.590 52.381 10.91 0.00 44.69 3.07
293 294 1.409790 TCAATACGGTCCCGGTACATG 59.590 52.381 10.91 0.00 44.69 3.21
294 295 1.779221 TCAATACGGTCCCGGTACAT 58.221 50.000 10.91 0.00 44.69 2.29
295 296 1.477700 CTTCAATACGGTCCCGGTACA 59.522 52.381 10.91 0.00 44.69 2.90
296 297 1.803998 GCTTCAATACGGTCCCGGTAC 60.804 57.143 10.91 0.00 44.69 3.34
297 298 0.461135 GCTTCAATACGGTCCCGGTA 59.539 55.000 10.91 1.00 44.69 4.02
298 299 1.219935 GCTTCAATACGGTCCCGGT 59.780 57.895 10.91 0.00 44.69 5.28
299 300 0.391927 TTGCTTCAATACGGTCCCGG 60.392 55.000 10.91 0.00 44.69 5.73
300 301 1.663695 ATTGCTTCAATACGGTCCCG 58.336 50.000 3.76 3.76 46.03 5.14
308 309 4.697828 TGGAACTTGCGTATTGCTTCAATA 59.302 37.500 0.00 0.00 46.63 1.90
309 310 3.505680 TGGAACTTGCGTATTGCTTCAAT 59.494 39.130 0.00 0.00 46.63 2.57
310 311 2.881513 TGGAACTTGCGTATTGCTTCAA 59.118 40.909 0.00 0.00 46.63 2.69
311 312 2.483877 CTGGAACTTGCGTATTGCTTCA 59.516 45.455 0.00 0.00 46.63 3.02
312 313 2.742053 TCTGGAACTTGCGTATTGCTTC 59.258 45.455 0.00 0.00 46.63 3.86
313 314 2.778299 TCTGGAACTTGCGTATTGCTT 58.222 42.857 0.00 0.00 46.63 3.91
314 315 2.472695 TCTGGAACTTGCGTATTGCT 57.527 45.000 0.00 0.00 46.63 3.91
315 316 2.414161 GGTTCTGGAACTTGCGTATTGC 60.414 50.000 12.34 0.00 41.76 3.56
316 317 2.811431 TGGTTCTGGAACTTGCGTATTG 59.189 45.455 12.34 0.00 40.94 1.90
317 318 3.134574 TGGTTCTGGAACTTGCGTATT 57.865 42.857 12.34 0.00 40.94 1.89
318 319 2.851263 TGGTTCTGGAACTTGCGTAT 57.149 45.000 12.34 0.00 40.94 3.06
319 320 2.158871 ACTTGGTTCTGGAACTTGCGTA 60.159 45.455 12.34 0.00 40.94 4.42
320 321 1.308998 CTTGGTTCTGGAACTTGCGT 58.691 50.000 12.34 0.00 40.94 5.24
321 322 1.308998 ACTTGGTTCTGGAACTTGCG 58.691 50.000 12.34 3.37 40.94 4.85
322 323 2.687935 TCAACTTGGTTCTGGAACTTGC 59.312 45.455 12.34 0.00 40.94 4.01
323 324 4.672409 GTTCAACTTGGTTCTGGAACTTG 58.328 43.478 12.34 9.24 40.94 3.16
324 325 3.377172 CGTTCAACTTGGTTCTGGAACTT 59.623 43.478 12.34 0.00 40.94 2.66
325 326 2.943033 CGTTCAACTTGGTTCTGGAACT 59.057 45.455 12.34 0.00 40.94 3.01
326 327 2.681344 ACGTTCAACTTGGTTCTGGAAC 59.319 45.455 5.02 5.02 40.45 3.62
327 328 2.940410 GACGTTCAACTTGGTTCTGGAA 59.060 45.455 0.00 0.00 0.00 3.53
328 329 2.557317 GACGTTCAACTTGGTTCTGGA 58.443 47.619 0.00 0.00 0.00 3.86
329 330 1.260561 CGACGTTCAACTTGGTTCTGG 59.739 52.381 0.00 0.00 0.00 3.86
330 331 1.332904 GCGACGTTCAACTTGGTTCTG 60.333 52.381 0.00 0.00 0.00 3.02
331 332 0.935196 GCGACGTTCAACTTGGTTCT 59.065 50.000 0.00 0.00 0.00 3.01
332 333 0.041576 GGCGACGTTCAACTTGGTTC 60.042 55.000 0.00 0.00 0.00 3.62
333 334 0.745128 TGGCGACGTTCAACTTGGTT 60.745 50.000 0.00 0.00 0.00 3.67
334 335 1.153329 TGGCGACGTTCAACTTGGT 60.153 52.632 0.00 0.00 0.00 3.67
335 336 1.569493 CTGGCGACGTTCAACTTGG 59.431 57.895 0.00 0.00 0.00 3.61
336 337 1.082756 GCTGGCGACGTTCAACTTG 60.083 57.895 0.00 0.00 0.00 3.16
337 338 2.594962 CGCTGGCGACGTTCAACTT 61.595 57.895 9.51 0.00 42.83 2.66
338 339 3.036084 CGCTGGCGACGTTCAACT 61.036 61.111 9.51 0.00 42.83 3.16
339 340 3.033764 TCGCTGGCGACGTTCAAC 61.034 61.111 13.78 0.00 44.01 3.18
347 348 3.506096 CCTCGTAGTCGCTGGCGA 61.506 66.667 13.78 13.78 46.87 5.54
348 349 3.506096 TCCTCGTAGTCGCTGGCG 61.506 66.667 8.80 8.80 41.35 5.69
349 350 1.094073 TAGTCCTCGTAGTCGCTGGC 61.094 60.000 0.00 0.00 36.96 4.85
350 351 1.595466 ATAGTCCTCGTAGTCGCTGG 58.405 55.000 0.00 0.00 36.96 4.85
351 352 3.651206 TCTATAGTCCTCGTAGTCGCTG 58.349 50.000 0.00 0.00 36.96 5.18
352 353 4.247258 CATCTATAGTCCTCGTAGTCGCT 58.753 47.826 0.00 0.00 36.96 4.93
353 354 3.181518 GCATCTATAGTCCTCGTAGTCGC 60.182 52.174 0.00 0.00 36.96 5.19
354 355 3.995048 TGCATCTATAGTCCTCGTAGTCG 59.005 47.826 0.00 0.00 38.55 4.18
355 356 5.943706 TTGCATCTATAGTCCTCGTAGTC 57.056 43.478 0.00 0.00 0.00 2.59
356 357 6.902771 AATTGCATCTATAGTCCTCGTAGT 57.097 37.500 0.00 0.00 0.00 2.73
357 358 8.898761 AGATAATTGCATCTATAGTCCTCGTAG 58.101 37.037 0.00 0.00 33.41 3.51
358 359 8.809468 AGATAATTGCATCTATAGTCCTCGTA 57.191 34.615 0.00 0.00 33.41 3.43
359 360 7.414651 CGAGATAATTGCATCTATAGTCCTCGT 60.415 40.741 0.00 0.00 35.37 4.18
360 361 6.909895 CGAGATAATTGCATCTATAGTCCTCG 59.090 42.308 0.00 0.00 35.37 4.63
361 362 7.067615 TCCGAGATAATTGCATCTATAGTCCTC 59.932 40.741 0.00 0.00 35.37 3.71
362 363 6.892456 TCCGAGATAATTGCATCTATAGTCCT 59.108 38.462 0.00 0.00 35.37 3.85
363 364 7.101652 TCCGAGATAATTGCATCTATAGTCC 57.898 40.000 0.00 0.00 35.37 3.85
364 365 8.029522 TGTTCCGAGATAATTGCATCTATAGTC 58.970 37.037 0.00 0.00 35.37 2.59
365 366 7.896811 TGTTCCGAGATAATTGCATCTATAGT 58.103 34.615 0.00 0.00 35.37 2.12
366 367 8.763049 TTGTTCCGAGATAATTGCATCTATAG 57.237 34.615 0.00 0.00 35.37 1.31
367 368 9.554395 TTTTGTTCCGAGATAATTGCATCTATA 57.446 29.630 0.00 0.00 35.37 1.31
368 369 8.345565 GTTTTGTTCCGAGATAATTGCATCTAT 58.654 33.333 0.00 0.00 35.37 1.98
369 370 7.335673 TGTTTTGTTCCGAGATAATTGCATCTA 59.664 33.333 0.00 0.00 35.37 1.98
370 371 6.150976 TGTTTTGTTCCGAGATAATTGCATCT 59.849 34.615 0.00 0.00 37.99 2.90
371 372 6.321717 TGTTTTGTTCCGAGATAATTGCATC 58.678 36.000 0.00 0.00 0.00 3.91
372 373 6.150976 TCTGTTTTGTTCCGAGATAATTGCAT 59.849 34.615 0.00 0.00 0.00 3.96
373 374 5.471797 TCTGTTTTGTTCCGAGATAATTGCA 59.528 36.000 0.00 0.00 0.00 4.08
374 375 5.938322 TCTGTTTTGTTCCGAGATAATTGC 58.062 37.500 0.00 0.00 0.00 3.56
375 376 6.371548 TCCTCTGTTTTGTTCCGAGATAATTG 59.628 38.462 0.00 0.00 0.00 2.32
376 377 6.472887 TCCTCTGTTTTGTTCCGAGATAATT 58.527 36.000 0.00 0.00 0.00 1.40
377 378 6.049955 TCCTCTGTTTTGTTCCGAGATAAT 57.950 37.500 0.00 0.00 0.00 1.28
378 379 5.477607 TCCTCTGTTTTGTTCCGAGATAA 57.522 39.130 0.00 0.00 0.00 1.75
379 380 5.221561 TGTTCCTCTGTTTTGTTCCGAGATA 60.222 40.000 0.00 0.00 0.00 1.98
380 381 4.065789 GTTCCTCTGTTTTGTTCCGAGAT 58.934 43.478 0.00 0.00 0.00 2.75
381 382 3.118555 TGTTCCTCTGTTTTGTTCCGAGA 60.119 43.478 0.00 0.00 0.00 4.04
382 383 3.202906 TGTTCCTCTGTTTTGTTCCGAG 58.797 45.455 0.00 0.00 0.00 4.63
383 384 3.269538 TGTTCCTCTGTTTTGTTCCGA 57.730 42.857 0.00 0.00 0.00 4.55
384 385 3.315191 ACATGTTCCTCTGTTTTGTTCCG 59.685 43.478 0.00 0.00 0.00 4.30
385 386 4.918810 ACATGTTCCTCTGTTTTGTTCC 57.081 40.909 0.00 0.00 0.00 3.62
406 407 6.775142 TCTGTTTTGTTCATGTCCCTTTCATA 59.225 34.615 0.00 0.00 0.00 2.15
435 436 2.328099 CGCCAGAACCAGGTCAAGC 61.328 63.158 0.00 0.00 0.00 4.01
455 456 0.110867 CGCGCGACAAAATCACTTGA 60.111 50.000 28.94 0.00 0.00 3.02
477 478 3.607987 CGCGCGATCGAACTGGTC 61.608 66.667 28.94 0.00 38.10 4.02
480 481 4.543736 GTGCGCGCGATCGAACTG 62.544 66.667 37.18 6.00 35.21 3.16
497 498 3.754323 TGGAACCAGTAATGCTTTTACCG 59.246 43.478 6.53 0.00 0.00 4.02
581 588 1.195448 CAACAACGCAGGTCTAGCTTG 59.805 52.381 0.00 0.00 0.00 4.01
759 766 4.142038 GTGAGAGACCTGGGCTTTAAAAA 58.858 43.478 2.08 0.00 0.00 1.94
760 767 3.751518 GTGAGAGACCTGGGCTTTAAAA 58.248 45.455 2.08 0.00 0.00 1.52
806 813 2.613977 GGATGGATAATCTGGACTGGCG 60.614 54.545 0.00 0.00 35.43 5.69
807 814 2.373169 TGGATGGATAATCTGGACTGGC 59.627 50.000 0.00 0.00 35.43 4.85
829 836 5.016173 TGGCTGTGGCTTTATTTATCAGTT 58.984 37.500 0.00 0.00 38.73 3.16
830 837 4.599041 TGGCTGTGGCTTTATTTATCAGT 58.401 39.130 0.00 0.00 38.73 3.41
832 839 4.599041 ACTGGCTGTGGCTTTATTTATCA 58.401 39.130 0.00 0.00 38.73 2.15
859 870 3.519913 AGGGGAGAAGAGGTTACATGAAC 59.480 47.826 0.00 0.00 37.31 3.18
865 876 5.012871 ACTTTTGTAGGGGAGAAGAGGTTAC 59.987 44.000 0.00 0.00 0.00 2.50
867 878 3.981375 ACTTTTGTAGGGGAGAAGAGGTT 59.019 43.478 0.00 0.00 0.00 3.50
869 880 4.327680 CAACTTTTGTAGGGGAGAAGAGG 58.672 47.826 0.00 0.00 0.00 3.69
874 885 2.062636 AGCCAACTTTTGTAGGGGAGA 58.937 47.619 0.00 0.00 0.00 3.71
877 888 3.492337 TGTTAGCCAACTTTTGTAGGGG 58.508 45.455 0.00 0.00 35.56 4.79
880 891 5.531287 AGGAACTGTTAGCCAACTTTTGTAG 59.469 40.000 0.00 0.00 37.18 2.74
881 892 5.442391 AGGAACTGTTAGCCAACTTTTGTA 58.558 37.500 0.00 0.00 37.18 2.41
882 893 4.278310 AGGAACTGTTAGCCAACTTTTGT 58.722 39.130 0.00 0.00 37.18 2.83
883 894 4.918810 AGGAACTGTTAGCCAACTTTTG 57.081 40.909 0.00 0.00 37.18 2.44
884 895 5.660460 CAAAGGAACTGTTAGCCAACTTTT 58.340 37.500 0.00 0.00 40.86 2.27
885 896 4.441495 GCAAAGGAACTGTTAGCCAACTTT 60.441 41.667 0.00 0.00 40.86 2.66
886 897 3.068165 GCAAAGGAACTGTTAGCCAACTT 59.932 43.478 0.00 0.00 40.86 2.66
887 898 2.623416 GCAAAGGAACTGTTAGCCAACT 59.377 45.455 0.00 0.00 40.86 3.16
888 899 2.360801 TGCAAAGGAACTGTTAGCCAAC 59.639 45.455 0.00 0.00 40.86 3.77
889 900 2.660572 TGCAAAGGAACTGTTAGCCAA 58.339 42.857 0.00 0.00 40.86 4.52
890 901 2.356665 TGCAAAGGAACTGTTAGCCA 57.643 45.000 0.00 0.00 40.86 4.75
891 902 3.288809 CTTGCAAAGGAACTGTTAGCC 57.711 47.619 0.00 0.00 41.27 3.93
942 953 1.298859 CCCCGTTGCAGAACAGCTAC 61.299 60.000 0.00 0.00 36.99 3.58
1127 1144 1.668101 CTCACCGTACTCCTGGAGCC 61.668 65.000 23.43 13.10 32.04 4.70
1138 1155 1.007038 GTGCCGTTGACTCACCGTA 60.007 57.895 0.00 0.00 0.00 4.02
1184 1208 2.238646 AGTTCCTGTGAGACCAACACAA 59.761 45.455 0.00 0.00 45.49 3.33
1192 1221 3.378427 AGCAAAACAAGTTCCTGTGAGAC 59.622 43.478 0.00 0.00 0.00 3.36
1196 1225 2.097466 ACGAGCAAAACAAGTTCCTGTG 59.903 45.455 0.00 0.00 0.00 3.66
1218 1247 1.542547 CCCCCTAAACCAATCGATCGG 60.543 57.143 16.41 0.00 0.00 4.18
1418 1455 9.495572 TTGAGACCAAGTAAACAAAACAAAAAT 57.504 25.926 0.00 0.00 0.00 1.82
1452 1492 3.689649 ACGAGCACCCAAAATCTAACATC 59.310 43.478 0.00 0.00 0.00 3.06
1466 1506 1.145803 GTACACCTTTCACGAGCACC 58.854 55.000 0.00 0.00 0.00 5.01
1491 1531 3.668447 TCTTGTAGCAGAAGCCAGAAAG 58.332 45.455 0.00 0.00 43.56 2.62
1495 1535 4.005650 TCATTTCTTGTAGCAGAAGCCAG 58.994 43.478 0.00 0.00 43.56 4.85
1497 1537 5.124457 TCATTCATTTCTTGTAGCAGAAGCC 59.876 40.000 0.00 0.00 43.56 4.35
1498 1538 6.187125 TCATTCATTTCTTGTAGCAGAAGC 57.813 37.500 0.00 0.00 42.56 3.86
1502 1542 8.965172 GCATTATTCATTCATTTCTTGTAGCAG 58.035 33.333 0.00 0.00 0.00 4.24
1504 1544 7.113965 CCGCATTATTCATTCATTTCTTGTAGC 59.886 37.037 0.00 0.00 0.00 3.58
1541 1581 1.869767 GTGGAGTATGCAGCTACATGC 59.130 52.381 9.84 8.32 46.68 4.06
1549 1589 0.817654 TCAGACGGTGGAGTATGCAG 59.182 55.000 0.00 0.00 36.81 4.41
1551 1591 2.474816 GAATCAGACGGTGGAGTATGC 58.525 52.381 0.00 0.00 33.74 3.14
1552 1592 2.732366 CGAATCAGACGGTGGAGTATG 58.268 52.381 0.00 0.00 34.91 2.39
1580 1791 2.095161 AGAACAGTACGTACTCTGCTGC 60.095 50.000 25.10 11.35 33.46 5.25
1587 1798 5.301298 ACCAGAAAAGAGAACAGTACGTACT 59.699 40.000 22.45 22.45 36.90 2.73
1595 1806 3.681897 CGGATCACCAGAAAAGAGAACAG 59.318 47.826 0.00 0.00 35.59 3.16
1621 1832 7.975058 GTGAGGTCCTAGTAACTGAGAAATAAC 59.025 40.741 0.00 0.00 0.00 1.89
1629 1840 5.419155 CAGAATGTGAGGTCCTAGTAACTGA 59.581 44.000 0.00 0.00 0.00 3.41
1632 1843 4.434520 GCAGAATGTGAGGTCCTAGTAAC 58.565 47.826 0.00 0.00 39.31 2.50
1680 1891 3.982475 TGCTCAACACTCAACTCACTAG 58.018 45.455 0.00 0.00 0.00 2.57
1690 1901 1.338579 CCCCTTCTCTGCTCAACACTC 60.339 57.143 0.00 0.00 0.00 3.51
1691 1902 0.689623 CCCCTTCTCTGCTCAACACT 59.310 55.000 0.00 0.00 0.00 3.55
1692 1903 0.687354 TCCCCTTCTCTGCTCAACAC 59.313 55.000 0.00 0.00 0.00 3.32
1693 1904 1.434188 TTCCCCTTCTCTGCTCAACA 58.566 50.000 0.00 0.00 0.00 3.33
1694 1905 2.431454 CTTTCCCCTTCTCTGCTCAAC 58.569 52.381 0.00 0.00 0.00 3.18
1695 1906 1.352352 CCTTTCCCCTTCTCTGCTCAA 59.648 52.381 0.00 0.00 0.00 3.02
1696 1907 0.987294 CCTTTCCCCTTCTCTGCTCA 59.013 55.000 0.00 0.00 0.00 4.26
1722 1933 2.844122 AAACACTCACTTGGAAACGC 57.156 45.000 0.00 0.00 0.00 4.84
1723 1934 6.780706 ATACTAAACACTCACTTGGAAACG 57.219 37.500 0.00 0.00 0.00 3.60
1739 1950 6.335934 TCCATGCCTAATCCCCTATACTAAA 58.664 40.000 0.00 0.00 0.00 1.85
1744 1955 5.170198 ACTTTCCATGCCTAATCCCCTATA 58.830 41.667 0.00 0.00 0.00 1.31
1745 1956 3.990245 ACTTTCCATGCCTAATCCCCTAT 59.010 43.478 0.00 0.00 0.00 2.57
1789 2000 2.418910 CCCACCACGCACCAAACAA 61.419 57.895 0.00 0.00 0.00 2.83
1855 2066 1.208165 TCTTTCCTGCCCTTCCCCTC 61.208 60.000 0.00 0.00 0.00 4.30
1904 2223 1.073098 TGAGGGGAGAAGGGGAAAAC 58.927 55.000 0.00 0.00 0.00 2.43
1912 2231 1.834263 CTAGTGGGTTGAGGGGAGAAG 59.166 57.143 0.00 0.00 0.00 2.85
1914 2233 0.617820 GCTAGTGGGTTGAGGGGAGA 60.618 60.000 0.00 0.00 0.00 3.71
1915 2234 1.627297 GGCTAGTGGGTTGAGGGGAG 61.627 65.000 0.00 0.00 0.00 4.30
1916 2235 1.615424 GGCTAGTGGGTTGAGGGGA 60.615 63.158 0.00 0.00 0.00 4.81
1917 2236 2.680370 GGGCTAGTGGGTTGAGGGG 61.680 68.421 0.00 0.00 0.00 4.79
1918 2237 2.680370 GGGGCTAGTGGGTTGAGGG 61.680 68.421 0.00 0.00 0.00 4.30
1926 2245 1.674322 CGTTTGTGGGGGCTAGTGG 60.674 63.158 0.00 0.00 0.00 4.00
1931 2250 1.420532 TTACCTCGTTTGTGGGGGCT 61.421 55.000 0.00 0.00 32.90 5.19
2100 3714 1.252215 TGGGCCGAGATACGTTGTCA 61.252 55.000 0.00 0.00 40.78 3.58
2106 3720 1.068588 TCTTTCATGGGCCGAGATACG 59.931 52.381 0.00 0.00 42.18 3.06
2127 3741 3.375647 TCCTATTTTTAGTGTGGGGCC 57.624 47.619 0.00 0.00 0.00 5.80
2154 3768 3.245948 TGGGTTCATGGGCCTTATTTCTT 60.246 43.478 4.53 0.00 0.00 2.52
2155 3769 2.314549 TGGGTTCATGGGCCTTATTTCT 59.685 45.455 4.53 0.00 0.00 2.52
2179 3793 7.741785 TCTTCTTTTTGGTTATGGACTGTCTA 58.258 34.615 7.85 1.29 0.00 2.59
2181 3795 6.877611 TCTTCTTTTTGGTTATGGACTGTC 57.122 37.500 0.00 0.00 0.00 3.51
2183 3797 7.510549 TCTTCTTCTTTTTGGTTATGGACTG 57.489 36.000 0.00 0.00 0.00 3.51
2200 3814 2.031069 GTGGCCCGTTTCTTTCTTCTTC 60.031 50.000 0.00 0.00 0.00 2.87
2225 3839 1.202592 TCAGGTTGTTTAGCGACTGCA 60.203 47.619 0.00 0.00 46.23 4.41
2228 3842 3.131396 CAACTCAGGTTGTTTAGCGACT 58.869 45.455 0.00 0.00 45.42 4.18
2247 3861 1.304381 GTGATGGGGAGCAAGGCAA 60.304 57.895 0.00 0.00 0.00 4.52
2248 3862 1.866483 ATGTGATGGGGAGCAAGGCA 61.866 55.000 0.00 0.00 0.00 4.75
2249 3863 1.076485 ATGTGATGGGGAGCAAGGC 60.076 57.895 0.00 0.00 0.00 4.35
2250 3864 0.033796 ACATGTGATGGGGAGCAAGG 60.034 55.000 0.00 0.00 33.60 3.61
2251 3865 1.843368 AACATGTGATGGGGAGCAAG 58.157 50.000 0.00 0.00 33.60 4.01
2252 3866 2.307496 AAACATGTGATGGGGAGCAA 57.693 45.000 0.00 0.00 33.60 3.91
2253 3867 3.668141 ATAAACATGTGATGGGGAGCA 57.332 42.857 0.00 0.00 33.60 4.26
2254 3868 6.655078 AAATATAAACATGTGATGGGGAGC 57.345 37.500 0.00 0.00 33.60 4.70
2255 3869 8.694540 TCAAAAATATAAACATGTGATGGGGAG 58.305 33.333 0.00 0.00 33.60 4.30
2256 3870 8.474025 GTCAAAAATATAAACATGTGATGGGGA 58.526 33.333 0.00 0.00 33.60 4.81
2257 3871 7.710475 GGTCAAAAATATAAACATGTGATGGGG 59.290 37.037 0.00 0.00 33.60 4.96
2258 3872 7.710475 GGGTCAAAAATATAAACATGTGATGGG 59.290 37.037 0.00 0.00 33.60 4.00
2259 3873 7.710475 GGGGTCAAAAATATAAACATGTGATGG 59.290 37.037 0.00 0.00 33.60 3.51
2260 3874 7.710475 GGGGGTCAAAAATATAAACATGTGATG 59.290 37.037 0.00 0.00 0.00 3.07
2261 3875 7.791029 GGGGGTCAAAAATATAAACATGTGAT 58.209 34.615 0.00 0.00 0.00 3.06
2262 3876 7.176589 GGGGGTCAAAAATATAAACATGTGA 57.823 36.000 0.00 0.00 0.00 3.58
2322 3936 8.985315 ATTTTCTCTTAATCCTACATGCATCA 57.015 30.769 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.