Multiple sequence alignment - TraesCS5B01G373300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G373300 chr5B 100.000 8781 0 0 1 8781 551056682 551047902 0.000000e+00 16216.0
1 TraesCS5B01G373300 chr5B 88.176 998 39 22 5923 6920 705482191 705483109 0.000000e+00 1116.0
2 TraesCS5B01G373300 chr5B 100.000 240 0 0 333 572 551059777 551060016 2.250000e-120 444.0
3 TraesCS5B01G373300 chr5B 92.718 206 4 3 7004 7202 705483115 705483316 4.010000e-73 287.0
4 TraesCS5B01G373300 chr5B 93.750 128 8 0 5435 5562 462141604 462141477 9.000000e-45 193.0
5 TraesCS5B01G373300 chr5B 91.912 136 10 1 5426 5561 493512434 493512568 1.160000e-43 189.0
6 TraesCS5B01G373300 chr5B 92.405 79 5 1 5637 5714 532618466 532618544 2.590000e-20 111.0
7 TraesCS5B01G373300 chr5D 90.878 3771 184 67 1362 5070 450871105 450867433 0.000000e+00 4911.0
8 TraesCS5B01G373300 chr5D 88.368 3224 208 76 5560 8724 450867353 450864238 0.000000e+00 3722.0
9 TraesCS5B01G373300 chr5D 84.296 433 41 14 6031 6456 484353971 484353559 1.780000e-106 398.0
10 TraesCS5B01G373300 chr5D 82.477 428 36 23 704 1098 450871689 450871268 1.090000e-88 339.0
11 TraesCS5B01G373300 chr5D 95.146 103 2 1 6616 6718 69456522 69456621 9.120000e-35 159.0
12 TraesCS5B01G373300 chr5D 95.349 86 4 0 5353 5438 450867438 450867353 4.280000e-28 137.0
13 TraesCS5B01G373300 chr5D 92.405 79 5 1 5637 5714 438121349 438121427 2.590000e-20 111.0
14 TraesCS5B01G373300 chr5D 95.122 41 2 0 6556 6596 69456484 69456524 2.050000e-06 65.8
15 TraesCS5B01G373300 chr5A 92.966 3028 125 36 2445 5439 570017773 570014801 0.000000e+00 4331.0
16 TraesCS5B01G373300 chr5A 87.528 2229 100 66 5560 7731 570014801 570012694 0.000000e+00 2412.0
17 TraesCS5B01G373300 chr5A 82.141 1523 98 68 702 2115 570020044 570018587 0.000000e+00 1146.0
18 TraesCS5B01G373300 chr5A 86.756 1042 109 21 7745 8781 570012541 570011524 0.000000e+00 1133.0
19 TraesCS5B01G373300 chr5A 86.885 366 22 13 2099 2458 570018135 570017790 3.840000e-103 387.0
20 TraesCS5B01G373300 chr5A 90.210 143 14 0 5427 5569 56313225 56313083 4.190000e-43 187.0
21 TraesCS5B01G373300 chr5A 93.671 79 4 1 5637 5714 552967908 552967986 5.570000e-22 117.0
22 TraesCS5B01G373300 chr5A 91.304 46 0 3 576 621 570020302 570020261 9.520000e-05 60.2
23 TraesCS5B01G373300 chr1A 94.185 1307 53 14 4145 5436 587814276 587815574 0.000000e+00 1971.0
24 TraesCS5B01G373300 chr1A 86.456 1137 73 34 5560 6690 587815573 587816634 0.000000e+00 1171.0
25 TraesCS5B01G373300 chr1A 78.846 208 37 3 8321 8523 283824198 283823993 5.530000e-27 134.0
26 TraesCS5B01G373300 chr2B 100.000 572 0 0 1 572 758566445 758565874 0.000000e+00 1057.0
27 TraesCS5B01G373300 chr2B 98.812 589 4 3 1 587 773890819 773891406 0.000000e+00 1046.0
28 TraesCS5B01G373300 chr2B 92.586 580 16 7 1 568 749926492 749925928 0.000000e+00 808.0
29 TraesCS5B01G373300 chr2B 95.043 464 17 3 2889 3352 61184079 61184536 0.000000e+00 725.0
30 TraesCS5B01G373300 chr2B 100.000 241 0 0 333 573 758569540 758569780 6.250000e-121 446.0
31 TraesCS5B01G373300 chr2B 100.000 240 0 0 333 572 773885488 773885249 2.250000e-120 444.0
32 TraesCS5B01G373300 chr2B 90.000 340 27 5 2551 2884 61183684 61184022 4.870000e-117 433.0
33 TraesCS5B01G373300 chr2B 86.381 257 22 8 5741 5994 411888379 411888133 1.450000e-67 268.0
34 TraesCS5B01G373300 chr2B 85.878 262 22 11 5741 5998 49186297 49186047 1.880000e-66 265.0
35 TraesCS5B01G373300 chr2B 89.933 149 8 5 5434 5578 513692061 513692206 1.510000e-42 185.0
36 TraesCS5B01G373300 chr2B 87.582 153 18 1 5435 5587 683761858 683762009 9.060000e-40 176.0
37 TraesCS5B01G373300 chr2B 88.235 136 12 3 5713 5848 692704095 692704226 9.120000e-35 159.0
38 TraesCS5B01G373300 chr4B 99.650 572 2 0 1 572 646566580 646567151 0.000000e+00 1046.0
39 TraesCS5B01G373300 chr4B 99.301 572 3 1 1 572 37338039 37337469 0.000000e+00 1033.0
40 TraesCS5B01G373300 chr4B 100.000 241 0 0 333 573 37341574 37341814 6.250000e-121 446.0
41 TraesCS5B01G373300 chr6B 92.675 587 17 6 1 575 314023247 314022675 0.000000e+00 822.0
42 TraesCS5B01G373300 chr6B 92.481 133 10 0 5429 5561 503545756 503545624 3.240000e-44 191.0
43 TraesCS5B01G373300 chr3B 92.662 586 17 6 1 574 512430899 512431470 0.000000e+00 821.0
44 TraesCS5B01G373300 chr3B 93.750 128 8 0 5434 5561 400292969 400293096 9.000000e-45 193.0
45 TraesCS5B01G373300 chr7B 89.732 672 26 12 6565 7202 559684048 559684710 0.000000e+00 819.0
46 TraesCS5B01G373300 chr7B 88.660 582 20 15 5923 6504 559683491 559684026 0.000000e+00 667.0
47 TraesCS5B01G373300 chr7B 83.082 331 24 12 5874 6202 62057512 62057812 1.120000e-68 272.0
48 TraesCS5B01G373300 chr7B 89.189 148 13 3 5434 5579 678552328 678552474 1.950000e-41 182.0
49 TraesCS5B01G373300 chr7B 93.000 100 4 1 6619 6718 65397758 65397854 9.190000e-30 143.0
50 TraesCS5B01G373300 chr6A 96.552 464 10 3 2889 3352 616027093 616027550 0.000000e+00 763.0
51 TraesCS5B01G373300 chr6A 97.233 253 7 0 333 585 28419440 28419692 6.300000e-116 429.0
52 TraesCS5B01G373300 chr6A 89.150 341 29 4 2551 2884 616026697 616027036 1.360000e-112 418.0
53 TraesCS5B01G373300 chr1B 96.121 464 12 3 2889 3352 50166151 50166608 0.000000e+00 752.0
54 TraesCS5B01G373300 chr1B 89.706 340 29 4 2551 2884 50165755 50166094 6.300000e-116 429.0
55 TraesCS5B01G373300 chr1B 83.082 331 24 12 5874 6202 410134944 410134644 1.120000e-68 272.0
56 TraesCS5B01G373300 chr3A 93.264 386 25 1 4090 4475 42386079 42386463 1.280000e-157 568.0
57 TraesCS5B01G373300 chr7A 91.912 136 10 1 5431 5566 314095846 314095712 1.160000e-43 189.0
58 TraesCS5B01G373300 chr3D 94.175 103 3 1 6616 6718 535159724 535159823 4.250000e-33 154.0
59 TraesCS5B01G373300 chr3D 97.619 42 1 0 6555 6596 535159685 535159726 1.220000e-08 73.1
60 TraesCS5B01G373300 chr2A 86.260 131 12 3 6796 6923 81032900 81033027 4.280000e-28 137.0
61 TraesCS5B01G373300 chr1D 89.524 105 8 1 6617 6721 24991208 24991107 7.150000e-26 130.0
62 TraesCS5B01G373300 chrUn 100.000 36 0 0 1 36 418526426 418526391 5.690000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G373300 chr5B 551047902 551056682 8780 True 16216.00 16216 100.0000 1 8781 1 chr5B.!!$R2 8780
1 TraesCS5B01G373300 chr5B 705482191 705483316 1125 False 701.50 1116 90.4470 5923 7202 2 chr5B.!!$F4 1279
2 TraesCS5B01G373300 chr5D 450864238 450871689 7451 True 2277.25 4911 89.2680 704 8724 4 chr5D.!!$R2 8020
3 TraesCS5B01G373300 chr5A 570011524 570020302 8778 True 1578.20 4331 87.9300 576 8781 6 chr5A.!!$R2 8205
4 TraesCS5B01G373300 chr1A 587814276 587816634 2358 False 1571.00 1971 90.3205 4145 6690 2 chr1A.!!$F1 2545
5 TraesCS5B01G373300 chr2B 758565874 758566445 571 True 1057.00 1057 100.0000 1 572 1 chr2B.!!$R4 571
6 TraesCS5B01G373300 chr2B 773890819 773891406 587 False 1046.00 1046 98.8120 1 587 1 chr2B.!!$F5 586
7 TraesCS5B01G373300 chr2B 749925928 749926492 564 True 808.00 808 92.5860 1 568 1 chr2B.!!$R3 567
8 TraesCS5B01G373300 chr2B 61183684 61184536 852 False 579.00 725 92.5215 2551 3352 2 chr2B.!!$F6 801
9 TraesCS5B01G373300 chr4B 646566580 646567151 571 False 1046.00 1046 99.6500 1 572 1 chr4B.!!$F2 571
10 TraesCS5B01G373300 chr4B 37337469 37338039 570 True 1033.00 1033 99.3010 1 572 1 chr4B.!!$R1 571
11 TraesCS5B01G373300 chr6B 314022675 314023247 572 True 822.00 822 92.6750 1 575 1 chr6B.!!$R1 574
12 TraesCS5B01G373300 chr3B 512430899 512431470 571 False 821.00 821 92.6620 1 574 1 chr3B.!!$F2 573
13 TraesCS5B01G373300 chr7B 559683491 559684710 1219 False 743.00 819 89.1960 5923 7202 2 chr7B.!!$F4 1279
14 TraesCS5B01G373300 chr6A 616026697 616027550 853 False 590.50 763 92.8510 2551 3352 2 chr6A.!!$F2 801
15 TraesCS5B01G373300 chr1B 50165755 50166608 853 False 590.50 752 92.9135 2551 3352 2 chr1B.!!$F1 801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
699 816 0.114364 TCCTCTACACTGTCCTGCCA 59.886 55.000 0.00 0.00 0.00 4.92 F
1350 1611 0.030101 TGGTTTTCAAAAGCGCCGAG 59.970 50.000 2.29 0.00 0.00 4.63 F
1733 2013 0.304705 CGCACGCTTGTTTCTTCTGT 59.695 50.000 0.00 0.00 0.00 3.41 F
2206 2995 0.165944 AGTTTGTTACATCAGCGCGC 59.834 50.000 26.66 26.66 0.00 6.86 F
3672 4603 0.104855 TATGTGATCTCCGGCTGTGC 59.895 55.000 0.00 0.00 0.00 4.57 F
3688 4619 1.153568 TGCATGTAGGTGAGCGAGC 60.154 57.895 0.00 0.00 0.00 5.03 F
4781 5734 1.315257 CCCATCGCAGTTTCCCCTTG 61.315 60.000 0.00 0.00 0.00 3.61 F
6042 7028 0.251519 TGCATACCACCACCATTGCA 60.252 50.000 0.00 0.00 37.73 4.08 F
6555 7582 0.108520 TTCAGATGTTACGGCCGTCC 60.109 55.000 38.01 26.49 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1713 1993 0.581529 CAGAAGAAACAAGCGTGCGA 59.418 50.000 0.0 0.0 0.00 5.10 R
2203 2992 1.002366 CATCTACCACTTCACTGCGC 58.998 55.000 0.0 0.0 0.00 6.09 R
3672 4603 0.108662 TGTGCTCGCTCACCTACATG 60.109 55.000 0.0 0.0 36.17 3.21 R
4200 5134 1.077858 CTTGCTTCCCTCTGCCTCC 60.078 63.158 0.0 0.0 0.00 4.30 R
4868 5821 1.134280 CCCAGCTCCACCATGTTAGAG 60.134 57.143 0.0 0.0 0.00 2.43 R
5079 6053 1.538075 ACTTTGCGTATTTTGTCCCGG 59.462 47.619 0.0 0.0 0.00 5.73 R
6133 7120 0.673644 GCCAGAATGTACCGCACACT 60.674 55.000 0.0 0.0 40.86 3.55 R
6942 7987 0.030603 GGGAAGGGAGATGGAGAGGT 60.031 60.000 0.0 0.0 0.00 3.85 R
7873 9117 0.324645 ATGGCACCCCCTGAAATGTC 60.325 55.000 0.0 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
604 619 2.380941 AGGCGGTTGGTTTACTTTTGT 58.619 42.857 0.00 0.00 0.00 2.83
605 620 2.359848 AGGCGGTTGGTTTACTTTTGTC 59.640 45.455 0.00 0.00 0.00 3.18
606 621 2.359848 GGCGGTTGGTTTACTTTTGTCT 59.640 45.455 0.00 0.00 0.00 3.41
607 622 3.549423 GGCGGTTGGTTTACTTTTGTCTC 60.549 47.826 0.00 0.00 0.00 3.36
642 657 4.584518 CCACAGCACAGGCCCACA 62.585 66.667 0.00 0.00 42.56 4.17
643 658 2.981909 CACAGCACAGGCCCACAG 60.982 66.667 0.00 0.00 42.56 3.66
644 659 4.962836 ACAGCACAGGCCCACAGC 62.963 66.667 0.00 0.00 42.56 4.40
645 660 4.960866 CAGCACAGGCCCACAGCA 62.961 66.667 0.00 0.00 46.50 4.41
648 663 4.584518 CACAGGCCCACAGCACCA 62.585 66.667 0.00 0.00 46.50 4.17
649 664 4.586235 ACAGGCCCACAGCACCAC 62.586 66.667 0.00 0.00 46.50 4.16
650 665 4.584518 CAGGCCCACAGCACCACA 62.585 66.667 0.00 0.00 46.50 4.17
676 793 4.636435 CTGGGTGGCCGTTCCGTT 62.636 66.667 0.00 0.00 37.80 4.44
677 794 4.629523 TGGGTGGCCGTTCCGTTC 62.630 66.667 0.00 0.00 37.80 3.95
679 796 4.324991 GGTGGCCGTTCCGTTCCT 62.325 66.667 0.00 0.00 37.80 3.36
680 797 2.281276 GTGGCCGTTCCGTTCCTT 60.281 61.111 0.00 0.00 37.80 3.36
683 800 2.346365 GCCGTTCCGTTCCTTCCT 59.654 61.111 0.00 0.00 0.00 3.36
697 814 1.205893 CCTTCCTCTACACTGTCCTGC 59.794 57.143 0.00 0.00 0.00 4.85
699 816 0.114364 TCCTCTACACTGTCCTGCCA 59.886 55.000 0.00 0.00 0.00 4.92
712 841 2.362077 GTCCTGCCATTCTCTCTCTCTC 59.638 54.545 0.00 0.00 0.00 3.20
810 973 0.175989 CTCGCTTTACACCCCTCCTC 59.824 60.000 0.00 0.00 0.00 3.71
811 974 0.252103 TCGCTTTACACCCCTCCTCT 60.252 55.000 0.00 0.00 0.00 3.69
812 975 0.175989 CGCTTTACACCCCTCCTCTC 59.824 60.000 0.00 0.00 0.00 3.20
814 977 1.205055 CTTTACACCCCTCCTCTCCC 58.795 60.000 0.00 0.00 0.00 4.30
816 979 2.190904 TTACACCCCTCCTCTCCCCC 62.191 65.000 0.00 0.00 0.00 5.40
817 980 3.700350 CACCCCTCCTCTCCCCCT 61.700 72.222 0.00 0.00 0.00 4.79
818 981 2.134652 ACCCCTCCTCTCCCCCTA 59.865 66.667 0.00 0.00 0.00 3.53
820 983 2.198980 CCCTCCTCTCCCCCTACG 59.801 72.222 0.00 0.00 0.00 3.51
821 984 2.702302 CCCTCCTCTCCCCCTACGT 61.702 68.421 0.00 0.00 0.00 3.57
863 1055 4.715130 CCGTCCCTCCCTCCCACA 62.715 72.222 0.00 0.00 0.00 4.17
864 1056 3.391382 CGTCCCTCCCTCCCACAC 61.391 72.222 0.00 0.00 0.00 3.82
866 1058 1.990614 GTCCCTCCCTCCCACACTC 60.991 68.421 0.00 0.00 0.00 3.51
869 1061 0.266152 CCCTCCCTCCCACACTCTAT 59.734 60.000 0.00 0.00 0.00 1.98
870 1062 1.344496 CCCTCCCTCCCACACTCTATT 60.344 57.143 0.00 0.00 0.00 1.73
871 1063 2.482494 CCTCCCTCCCACACTCTATTT 58.518 52.381 0.00 0.00 0.00 1.40
874 1066 4.660771 CCTCCCTCCCACACTCTATTTAAT 59.339 45.833 0.00 0.00 0.00 1.40
882 1074 1.455786 CACTCTATTTAATCGCGGCCG 59.544 52.381 24.05 24.05 0.00 6.13
896 1088 4.726351 GCCGCCGGAGATCGATCC 62.726 72.222 21.66 12.80 42.43 3.36
908 1100 3.447950 AGATCGATCCATCCATCCATCA 58.552 45.455 21.66 0.00 0.00 3.07
936 1136 3.608432 GGAGAAACCCAGCCATGC 58.392 61.111 0.00 0.00 0.00 4.06
960 1202 2.570284 CCTCGCACCCAAAAACCCC 61.570 63.158 0.00 0.00 0.00 4.95
976 1218 0.394899 CCCCAGCCTTTCAGATCCAC 60.395 60.000 0.00 0.00 0.00 4.02
1055 1301 5.755409 ATTTTTATTCCTCCCCACCAAAC 57.245 39.130 0.00 0.00 0.00 2.93
1080 1326 1.593479 GCATTCCGTACGGCCCTAC 60.593 63.158 29.64 13.29 34.68 3.18
1087 1333 2.297033 TCCGTACGGCCCTACATATTTC 59.703 50.000 29.64 0.00 34.68 2.17
1088 1334 2.036217 CCGTACGGCCCTACATATTTCA 59.964 50.000 23.44 0.00 0.00 2.69
1089 1335 3.054878 CGTACGGCCCTACATATTTCAC 58.945 50.000 7.57 0.00 0.00 3.18
1090 1336 3.243636 CGTACGGCCCTACATATTTCACT 60.244 47.826 7.57 0.00 0.00 3.41
1091 1337 3.470645 ACGGCCCTACATATTTCACTC 57.529 47.619 0.00 0.00 0.00 3.51
1092 1338 2.104281 ACGGCCCTACATATTTCACTCC 59.896 50.000 0.00 0.00 0.00 3.85
1093 1339 2.550208 CGGCCCTACATATTTCACTCCC 60.550 54.545 0.00 0.00 0.00 4.30
1094 1340 2.224793 GGCCCTACATATTTCACTCCCC 60.225 54.545 0.00 0.00 0.00 4.81
1095 1341 2.711547 GCCCTACATATTTCACTCCCCT 59.288 50.000 0.00 0.00 0.00 4.79
1096 1342 3.244596 GCCCTACATATTTCACTCCCCTC 60.245 52.174 0.00 0.00 0.00 4.30
1097 1343 3.328050 CCCTACATATTTCACTCCCCTCC 59.672 52.174 0.00 0.00 0.00 4.30
1098 1344 3.328050 CCTACATATTTCACTCCCCTCCC 59.672 52.174 0.00 0.00 0.00 4.30
1099 1345 2.136026 ACATATTTCACTCCCCTCCCC 58.864 52.381 0.00 0.00 0.00 4.81
1100 1346 2.294536 ACATATTTCACTCCCCTCCCCT 60.295 50.000 0.00 0.00 0.00 4.79
1101 1347 2.191981 TATTTCACTCCCCTCCCCTC 57.808 55.000 0.00 0.00 0.00 4.30
1102 1348 0.624795 ATTTCACTCCCCTCCCCTCC 60.625 60.000 0.00 0.00 0.00 4.30
1155 1411 2.837291 CGCCTCCTCCTCCTCCAG 60.837 72.222 0.00 0.00 0.00 3.86
1156 1412 3.160748 GCCTCCTCCTCCTCCAGC 61.161 72.222 0.00 0.00 0.00 4.85
1157 1413 2.366167 CCTCCTCCTCCTCCAGCA 59.634 66.667 0.00 0.00 0.00 4.41
1158 1414 2.063378 CCTCCTCCTCCTCCAGCAC 61.063 68.421 0.00 0.00 0.00 4.40
1159 1415 2.039624 TCCTCCTCCTCCAGCACC 59.960 66.667 0.00 0.00 0.00 5.01
1160 1416 3.465403 CCTCCTCCTCCAGCACCG 61.465 72.222 0.00 0.00 0.00 4.94
1161 1417 3.465403 CTCCTCCTCCAGCACCGG 61.465 72.222 0.00 0.00 0.00 5.28
1215 1471 1.070108 GCGTTCGTCTCCAAGGTTTTC 60.070 52.381 0.00 0.00 0.00 2.29
1216 1472 1.191647 CGTTCGTCTCCAAGGTTTTCG 59.808 52.381 0.00 0.00 0.00 3.46
1217 1473 2.476821 GTTCGTCTCCAAGGTTTTCGA 58.523 47.619 0.00 0.00 0.00 3.71
1218 1474 3.064931 GTTCGTCTCCAAGGTTTTCGAT 58.935 45.455 0.00 0.00 0.00 3.59
1219 1475 2.955614 TCGTCTCCAAGGTTTTCGATC 58.044 47.619 0.00 0.00 0.00 3.69
1220 1476 1.654105 CGTCTCCAAGGTTTTCGATCG 59.346 52.381 9.36 9.36 0.00 3.69
1221 1477 2.670229 CGTCTCCAAGGTTTTCGATCGA 60.670 50.000 15.15 15.15 0.00 3.59
1230 1486 2.542837 TTTTCGATCGAAGCACGCGC 62.543 55.000 27.68 0.00 42.26 6.86
1271 1532 2.251371 GTGTTCGCCTGCGTTTCC 59.749 61.111 11.68 0.00 40.74 3.13
1284 1545 1.281656 GTTTCCGCCGTTTCTGTGG 59.718 57.895 0.00 0.00 34.62 4.17
1289 1550 2.740826 GCCGTTTCTGTGGCGCTA 60.741 61.111 7.64 0.00 42.22 4.26
1290 1551 2.740714 GCCGTTTCTGTGGCGCTAG 61.741 63.158 7.64 3.77 42.22 3.42
1291 1552 2.740714 CCGTTTCTGTGGCGCTAGC 61.741 63.158 7.64 4.06 44.18 3.42
1292 1553 1.738099 CGTTTCTGTGGCGCTAGCT 60.738 57.895 13.93 0.00 44.37 3.32
1299 1560 1.290639 GTGGCGCTAGCTAGATCCC 59.709 63.158 25.15 18.80 44.37 3.85
1348 1609 1.536462 CGTGGTTTTCAAAAGCGCCG 61.536 55.000 17.66 13.06 0.00 6.46
1350 1611 0.030101 TGGTTTTCAAAAGCGCCGAG 59.970 50.000 2.29 0.00 0.00 4.63
1353 1614 0.030101 TTTTCAAAAGCGCCGAGGTG 59.970 50.000 2.29 0.00 0.00 4.00
1359 1620 0.958822 AAAGCGCCGAGGTGATTTTT 59.041 45.000 12.47 4.30 40.62 1.94
1508 1779 3.963340 AAAAGCGTCGTGTTTTTGTTG 57.037 38.095 0.00 0.00 39.21 3.33
1632 1906 2.099062 GCTCGACGCAATGCCTTG 59.901 61.111 0.00 0.00 38.92 3.61
1730 2010 2.099633 TTTCGCACGCTTGTTTCTTC 57.900 45.000 0.00 0.00 0.00 2.87
1731 2011 1.295792 TTCGCACGCTTGTTTCTTCT 58.704 45.000 0.00 0.00 0.00 2.85
1732 2012 0.581529 TCGCACGCTTGTTTCTTCTG 59.418 50.000 0.00 0.00 0.00 3.02
1733 2013 0.304705 CGCACGCTTGTTTCTTCTGT 59.695 50.000 0.00 0.00 0.00 3.41
1734 2014 1.746760 GCACGCTTGTTTCTTCTGTG 58.253 50.000 0.00 0.00 0.00 3.66
1735 2015 1.597937 GCACGCTTGTTTCTTCTGTGG 60.598 52.381 0.00 0.00 0.00 4.17
1779 2059 4.224715 GCATCGGCTAGGGTTTTAATTC 57.775 45.455 0.00 0.00 36.96 2.17
1795 2106 9.503427 GGTTTTAATTCTTCGATTCGATTTGAT 57.497 29.630 9.96 0.00 35.23 2.57
1826 2137 1.682867 CGCAGTTCTATTCGCGTGCA 61.683 55.000 5.77 0.00 42.66 4.57
1828 2139 1.350193 CAGTTCTATTCGCGTGCACT 58.650 50.000 16.19 0.00 0.00 4.40
1843 2154 2.617308 GTGCACTGATCTTGGATGGATG 59.383 50.000 10.32 0.00 0.00 3.51
1863 2174 1.636988 GACGAGTGGTTAATCCGTGG 58.363 55.000 0.00 0.00 39.52 4.94
1903 2218 3.376935 AACGCGGAGGCAGATGGAG 62.377 63.158 12.47 0.00 39.92 3.86
1904 2219 4.598894 CGCGGAGGCAGATGGAGG 62.599 72.222 0.00 0.00 39.92 4.30
1905 2220 4.925861 GCGGAGGCAGATGGAGGC 62.926 72.222 0.00 0.00 39.62 4.70
1906 2221 4.598894 CGGAGGCAGATGGAGGCG 62.599 72.222 0.00 0.00 36.55 5.52
1907 2222 4.247380 GGAGGCAGATGGAGGCGG 62.247 72.222 0.00 0.00 36.55 6.13
1908 2223 3.157252 GAGGCAGATGGAGGCGGA 61.157 66.667 0.00 0.00 36.55 5.54
1909 2224 3.160047 AGGCAGATGGAGGCGGAG 61.160 66.667 0.00 0.00 36.55 4.63
2006 2325 1.478510 CGTACCTGAAGATCACCAGCT 59.521 52.381 8.39 0.00 0.00 4.24
2073 2394 2.019984 GGCAATCTGTTGGATCTGTCC 58.980 52.381 0.00 0.00 45.31 4.02
2126 2915 2.602660 GTGTGTGTGTTAACGTTACGGT 59.397 45.455 7.70 4.75 0.00 4.83
2127 2916 3.061965 GTGTGTGTGTTAACGTTACGGTT 59.938 43.478 7.70 3.90 0.00 4.44
2128 2917 3.061831 TGTGTGTGTTAACGTTACGGTTG 59.938 43.478 7.70 0.00 0.00 3.77
2129 2918 3.305629 GTGTGTGTTAACGTTACGGTTGA 59.694 43.478 7.70 0.00 0.00 3.18
2130 2919 3.551082 TGTGTGTTAACGTTACGGTTGAG 59.449 43.478 7.70 0.00 0.00 3.02
2131 2920 3.060339 GTGTGTTAACGTTACGGTTGAGG 60.060 47.826 7.70 0.00 0.00 3.86
2203 2992 3.494626 AGTGTCAGTTTGTTACATCAGCG 59.505 43.478 0.00 0.00 0.00 5.18
2204 2993 2.223144 TGTCAGTTTGTTACATCAGCGC 59.777 45.455 0.00 0.00 0.00 5.92
2205 2994 1.459209 TCAGTTTGTTACATCAGCGCG 59.541 47.619 0.00 0.00 0.00 6.86
2206 2995 0.165944 AGTTTGTTACATCAGCGCGC 59.834 50.000 26.66 26.66 0.00 6.86
2209 2998 0.948623 TTGTTACATCAGCGCGCAGT 60.949 50.000 35.10 25.77 0.00 4.40
2304 3097 2.528041 TATGTGTGTACGTGTTGCCA 57.472 45.000 0.00 0.00 0.00 4.92
2306 3099 1.010580 TGTGTGTACGTGTTGCCAAG 58.989 50.000 0.00 0.00 0.00 3.61
2308 3101 1.281656 GTGTACGTGTTGCCAAGGC 59.718 57.895 3.61 3.61 42.35 4.35
2336 3135 3.385577 GCAGCTAAAGTAGAATCGGAGG 58.614 50.000 0.00 0.00 0.00 4.30
2355 3154 2.158623 AGGCTGGATTGCATTTCGGATA 60.159 45.455 0.00 0.00 34.04 2.59
2356 3155 2.227388 GGCTGGATTGCATTTCGGATAG 59.773 50.000 0.00 0.00 34.04 2.08
2357 3156 2.880890 GCTGGATTGCATTTCGGATAGT 59.119 45.455 0.00 0.00 0.00 2.12
2358 3157 4.065088 GCTGGATTGCATTTCGGATAGTA 58.935 43.478 0.00 0.00 0.00 1.82
2367 3166 9.778741 ATTGCATTTCGGATAGTAGAAAAGATA 57.221 29.630 0.00 0.00 39.42 1.98
2394 3193 3.466836 GCTACTAGTGCATGCATGGTAA 58.533 45.455 25.64 9.12 0.00 2.85
2395 3194 3.248602 GCTACTAGTGCATGCATGGTAAC 59.751 47.826 25.64 16.86 0.00 2.50
2396 3195 2.643551 ACTAGTGCATGCATGGTAACC 58.356 47.619 25.64 8.99 0.00 2.85
2408 3207 0.252330 TGGTAACCAGATCCGGACCA 60.252 55.000 6.12 4.43 32.04 4.02
2504 3335 4.408904 ACTGGAGTTGTAGGGGTAGTTA 57.591 45.455 0.00 0.00 0.00 2.24
2538 3377 3.243401 CCTGTTTGGTGTTAAGGTGAAGC 60.243 47.826 0.00 0.00 0.00 3.86
2568 3407 7.111466 TGTCATTATGATGGTCTGTTGATGAA 58.889 34.615 0.00 0.00 33.93 2.57
2576 3419 2.426024 GGTCTGTTGATGAAGCATGCAT 59.574 45.455 21.98 8.13 36.73 3.96
2577 3420 3.435566 GTCTGTTGATGAAGCATGCATG 58.564 45.455 22.70 22.70 31.27 4.06
2666 3518 5.070685 TCTGCTCAAGAGTAGTACACTGAA 58.929 41.667 13.61 0.00 41.18 3.02
2669 3521 5.983720 TGCTCAAGAGTAGTACACTGAAAAC 59.016 40.000 2.52 0.00 37.72 2.43
2709 3561 1.202806 TGCTCAGCTAGTGCCACTTTT 60.203 47.619 1.02 0.00 40.80 2.27
2739 3593 8.579682 ACTTTTTGTTGATTTAGCTGAATCAC 57.420 30.769 28.02 22.45 43.61 3.06
2749 3603 9.890629 TGATTTAGCTGAATCACTAGTTATTGT 57.109 29.630 25.36 0.00 40.20 2.71
2795 3651 5.349270 TCAATTTGTCCCGAATACTTACGTG 59.651 40.000 0.00 0.00 0.00 4.49
2826 3682 3.861840 TGCATGGCTGAAACTAGTACTC 58.138 45.455 0.00 0.00 0.00 2.59
2851 3707 5.237815 AGTTCGATTTCAGCTGTCATTGTA 58.762 37.500 14.67 2.37 0.00 2.41
2852 3708 5.700832 AGTTCGATTTCAGCTGTCATTGTAA 59.299 36.000 14.67 0.00 0.00 2.41
2853 3709 5.784750 TCGATTTCAGCTGTCATTGTAAG 57.215 39.130 14.67 0.00 0.00 2.34
2943 3851 5.586877 ACTAACCACCCAGTAGACAATAGA 58.413 41.667 0.00 0.00 0.00 1.98
3064 3985 6.187727 TCTCTTTAACATGACTGGGTCTTT 57.812 37.500 0.00 0.00 33.15 2.52
3157 4080 2.543012 CACGAATCATGCATCTGTCTCC 59.457 50.000 0.00 0.00 0.00 3.71
3161 4084 1.126488 TCATGCATCTGTCTCCCCTC 58.874 55.000 0.00 0.00 0.00 4.30
3169 4092 1.190643 CTGTCTCCCCTCTTCTGACC 58.809 60.000 0.00 0.00 0.00 4.02
3250 4173 1.679139 CACAACAGAACTGGCAAGGA 58.321 50.000 6.76 0.00 34.19 3.36
3251 4174 2.233271 CACAACAGAACTGGCAAGGAT 58.767 47.619 6.76 0.00 34.19 3.24
3252 4175 2.030540 CACAACAGAACTGGCAAGGATG 60.031 50.000 6.76 0.00 34.19 3.51
3365 4288 2.105006 GAGCAATGCTGGTCTCAGAA 57.895 50.000 14.48 0.00 44.97 3.02
3374 4297 2.350522 CTGGTCTCAGAAATGGAACGG 58.649 52.381 0.00 0.00 43.49 4.44
3418 4344 0.675083 TGTTCATGCCAAGTTGCTGG 59.325 50.000 0.00 0.00 39.71 4.85
3424 4350 1.412079 TGCCAAGTTGCTGGAATTGT 58.588 45.000 0.00 0.00 38.96 2.71
3432 4358 4.111916 AGTTGCTGGAATTGTTTTTCACG 58.888 39.130 0.00 0.00 0.00 4.35
3433 4359 2.468831 TGCTGGAATTGTTTTTCACGC 58.531 42.857 0.00 0.00 0.00 5.34
3672 4603 0.104855 TATGTGATCTCCGGCTGTGC 59.895 55.000 0.00 0.00 0.00 4.57
3688 4619 1.153568 TGCATGTAGGTGAGCGAGC 60.154 57.895 0.00 0.00 0.00 5.03
3761 4692 1.745653 CTTCTTCTCCAATTTCCGGGC 59.254 52.381 0.00 0.00 0.00 6.13
3938 4869 4.329545 GTCTGGCCCAGCAACGGA 62.330 66.667 5.66 0.00 0.00 4.69
4197 5131 2.105466 CAGAGCCAAGAGGAAGCGC 61.105 63.158 0.00 0.00 36.89 5.92
4200 5134 3.191539 GCCAAGAGGAAGCGCGAG 61.192 66.667 12.10 0.00 36.89 5.03
4258 5192 1.999024 CGAAGGAGAAGAAGAGCAAGC 59.001 52.381 0.00 0.00 0.00 4.01
4278 5212 2.883888 GCCATACAAGAGCCCCAAGAAA 60.884 50.000 0.00 0.00 0.00 2.52
4781 5734 1.315257 CCCATCGCAGTTTCCCCTTG 61.315 60.000 0.00 0.00 0.00 3.61
4799 5752 1.584483 GATGCGTTCGCCTGCAATG 60.584 57.895 14.44 0.00 45.45 2.82
4868 5821 1.375098 GGAACATGGAGCAGCTGAGC 61.375 60.000 20.43 7.89 0.00 4.26
4943 5896 5.772393 ACAGTTCATGGAAGGTAACCATA 57.228 39.130 0.00 0.00 45.00 2.74
4979 5952 5.896073 AAGATCCTGTCGATTTCCCTATT 57.104 39.130 0.00 0.00 0.00 1.73
5071 6045 2.538437 TGCTGCATCAAACACACAAAC 58.462 42.857 0.00 0.00 0.00 2.93
5079 6053 5.456822 GCATCAAACACACAAACTTCTCTTC 59.543 40.000 0.00 0.00 0.00 2.87
5085 6059 2.143925 CACAAACTTCTCTTCCGGGAC 58.856 52.381 0.00 0.00 0.00 4.46
5086 6060 1.766496 ACAAACTTCTCTTCCGGGACA 59.234 47.619 0.00 0.00 0.00 4.02
5090 6064 3.790089 ACTTCTCTTCCGGGACAAAAT 57.210 42.857 0.00 0.00 0.00 1.82
5093 6067 3.241067 TCTCTTCCGGGACAAAATACG 57.759 47.619 0.00 0.00 0.00 3.06
5139 6114 1.229177 ATCCCCCAACACCCAAAGC 60.229 57.895 0.00 0.00 0.00 3.51
5260 6235 1.282157 GCAACCTGGGACCTGTAGATT 59.718 52.381 0.00 0.00 0.00 2.40
5267 6242 1.769465 GGGACCTGTAGATTCTTCCCC 59.231 57.143 8.64 0.00 37.33 4.81
5268 6243 2.629909 GGGACCTGTAGATTCTTCCCCT 60.630 54.545 8.64 0.00 37.33 4.79
5269 6244 2.701423 GGACCTGTAGATTCTTCCCCTC 59.299 54.545 0.00 0.00 0.00 4.30
5270 6245 3.631346 GGACCTGTAGATTCTTCCCCTCT 60.631 52.174 0.00 0.00 0.00 3.69
5276 6251 6.839657 CCTGTAGATTCTTCCCCTCTTTAGTA 59.160 42.308 0.00 0.00 0.00 1.82
5317 6292 5.297776 AGGTGCATATATGTGAAGAAACTGC 59.702 40.000 14.14 0.00 0.00 4.40
5318 6293 5.506317 GGTGCATATATGTGAAGAAACTGCC 60.506 44.000 14.14 0.00 0.00 4.85
5319 6294 5.297776 GTGCATATATGTGAAGAAACTGCCT 59.702 40.000 14.14 0.00 0.00 4.75
5320 6295 5.528690 TGCATATATGTGAAGAAACTGCCTC 59.471 40.000 14.14 0.00 0.00 4.70
5418 6393 7.691213 TGGTCTCCCAACTAACAATGTATAAA 58.309 34.615 0.00 0.00 37.98 1.40
5440 6415 7.520451 AAAAAGGTGTTAAGGACATACTTCC 57.480 36.000 0.00 0.00 41.10 3.46
5442 6417 5.678955 AGGTGTTAAGGACATACTTCCTC 57.321 43.478 0.00 0.00 46.06 3.71
5443 6418 5.342866 AGGTGTTAAGGACATACTTCCTCT 58.657 41.667 0.00 0.00 46.06 3.69
5444 6419 5.187967 AGGTGTTAAGGACATACTTCCTCTG 59.812 44.000 0.00 0.00 46.06 3.35
5445 6420 5.046520 GGTGTTAAGGACATACTTCCTCTGT 60.047 44.000 0.00 0.00 46.06 3.41
5446 6421 6.100668 GTGTTAAGGACATACTTCCTCTGTC 58.899 44.000 0.00 0.00 46.06 3.51
5452 6427 5.407407 GACATACTTCCTCTGTCCAGAAA 57.593 43.478 0.00 0.00 36.94 2.52
5453 6428 5.983540 GACATACTTCCTCTGTCCAGAAAT 58.016 41.667 0.00 0.00 36.94 2.17
5454 6429 7.113658 GACATACTTCCTCTGTCCAGAAATA 57.886 40.000 0.00 0.00 36.94 1.40
5455 6430 6.879400 ACATACTTCCTCTGTCCAGAAATAC 58.121 40.000 0.00 0.00 36.94 1.89
5456 6431 6.670027 ACATACTTCCTCTGTCCAGAAATACT 59.330 38.462 0.00 0.00 36.94 2.12
5457 6432 7.181125 ACATACTTCCTCTGTCCAGAAATACTT 59.819 37.037 0.00 0.00 36.94 2.24
5458 6433 5.799213 ACTTCCTCTGTCCAGAAATACTTG 58.201 41.667 0.00 0.00 36.94 3.16
5459 6434 5.308237 ACTTCCTCTGTCCAGAAATACTTGT 59.692 40.000 0.00 0.00 36.94 3.16
5460 6435 5.407407 TCCTCTGTCCAGAAATACTTGTC 57.593 43.478 0.00 0.00 36.94 3.18
5461 6436 4.838423 TCCTCTGTCCAGAAATACTTGTCA 59.162 41.667 0.00 0.00 36.94 3.58
5462 6437 5.485353 TCCTCTGTCCAGAAATACTTGTCAT 59.515 40.000 0.00 0.00 36.94 3.06
5463 6438 5.814705 CCTCTGTCCAGAAATACTTGTCATC 59.185 44.000 0.00 0.00 36.94 2.92
5464 6439 6.358974 TCTGTCCAGAAATACTTGTCATCA 57.641 37.500 0.00 0.00 33.91 3.07
5465 6440 6.768483 TCTGTCCAGAAATACTTGTCATCAA 58.232 36.000 0.00 0.00 33.91 2.57
5466 6441 7.223584 TCTGTCCAGAAATACTTGTCATCAAA 58.776 34.615 0.00 0.00 33.91 2.69
5467 6442 7.719193 TCTGTCCAGAAATACTTGTCATCAAAA 59.281 33.333 0.00 0.00 33.91 2.44
5468 6443 8.408043 TGTCCAGAAATACTTGTCATCAAAAT 57.592 30.769 0.00 0.00 32.87 1.82
5469 6444 8.298854 TGTCCAGAAATACTTGTCATCAAAATG 58.701 33.333 0.00 0.00 32.87 2.32
5470 6445 7.756722 GTCCAGAAATACTTGTCATCAAAATGG 59.243 37.037 0.00 0.00 33.42 3.16
5471 6446 7.669304 TCCAGAAATACTTGTCATCAAAATGGA 59.331 33.333 0.00 0.00 33.42 3.41
5472 6447 8.472413 CCAGAAATACTTGTCATCAAAATGGAT 58.528 33.333 0.00 0.00 33.42 3.41
5526 6501 9.607333 ACATCTAGATACATCCTCTTTTATCCA 57.393 33.333 4.54 0.00 0.00 3.41
5535 6510 8.827832 ACATCCTCTTTTATCCATTTTGATGA 57.172 30.769 0.00 0.00 32.39 2.92
5536 6511 8.689972 ACATCCTCTTTTATCCATTTTGATGAC 58.310 33.333 0.00 0.00 32.39 3.06
5537 6512 8.689061 CATCCTCTTTTATCCATTTTGATGACA 58.311 33.333 0.00 0.00 0.00 3.58
5538 6513 8.648698 TCCTCTTTTATCCATTTTGATGACAA 57.351 30.769 0.00 0.00 0.00 3.18
5539 6514 8.742777 TCCTCTTTTATCCATTTTGATGACAAG 58.257 33.333 0.00 0.00 37.32 3.16
5540 6515 8.526147 CCTCTTTTATCCATTTTGATGACAAGT 58.474 33.333 0.00 0.00 37.32 3.16
5548 6523 9.865321 ATCCATTTTGATGACAAGTATTTTCAG 57.135 29.630 0.00 0.00 37.32 3.02
5549 6524 9.076781 TCCATTTTGATGACAAGTATTTTCAGA 57.923 29.630 0.00 0.00 37.32 3.27
5550 6525 9.132521 CCATTTTGATGACAAGTATTTTCAGAC 57.867 33.333 0.00 0.00 37.32 3.51
5551 6526 8.843733 CATTTTGATGACAAGTATTTTCAGACG 58.156 33.333 0.00 0.00 37.32 4.18
5552 6527 6.480524 TTGATGACAAGTATTTTCAGACGG 57.519 37.500 0.00 0.00 0.00 4.79
5553 6528 5.789521 TGATGACAAGTATTTTCAGACGGA 58.210 37.500 0.00 0.00 0.00 4.69
5554 6529 6.227522 TGATGACAAGTATTTTCAGACGGAA 58.772 36.000 0.00 0.00 0.00 4.30
5555 6530 6.368791 TGATGACAAGTATTTTCAGACGGAAG 59.631 38.462 0.00 0.00 36.72 3.46
5556 6531 4.994852 TGACAAGTATTTTCAGACGGAAGG 59.005 41.667 0.00 0.00 36.72 3.46
5557 6532 5.221561 TGACAAGTATTTTCAGACGGAAGGA 60.222 40.000 0.00 0.00 36.72 3.36
5558 6533 5.238583 ACAAGTATTTTCAGACGGAAGGAG 58.761 41.667 0.00 0.00 36.72 3.69
5606 6581 9.447040 GTTTCATTGTTCTGGTTTACTCTTTAC 57.553 33.333 0.00 0.00 0.00 2.01
5734 6710 9.528489 AAGGTAATTAAGTGCCTTCAGAAATTA 57.472 29.630 18.03 0.00 36.71 1.40
5750 6726 9.699410 TTCAGAAATTATAACAGTTCATCCCAT 57.301 29.630 0.00 0.00 0.00 4.00
5775 6751 7.653767 ACTAAGCAAACTGTACATGTTAGTC 57.346 36.000 2.30 0.00 0.00 2.59
5781 6757 8.314751 AGCAAACTGTACATGTTAGTCTTAGAT 58.685 33.333 2.30 0.00 0.00 1.98
5782 6758 8.936864 GCAAACTGTACATGTTAGTCTTAGATT 58.063 33.333 2.30 0.00 0.00 2.40
5816 6792 8.270744 AGAGAATTTAGCATTAGTTGATCACCT 58.729 33.333 0.00 0.00 0.00 4.00
5878 6857 6.545298 TGTATATGCACATTGGTCAGCATTTA 59.455 34.615 3.97 0.00 44.63 1.40
5896 6875 8.506168 AGCATTTATTAGCTGCAAGTAAGTAA 57.494 30.769 1.02 0.00 40.13 2.24
5994 6977 0.317160 TGCGGTCACTGAAGGTACAG 59.683 55.000 0.00 0.00 42.78 2.74
6035 7021 2.687935 CCCACTATTTGCATACCACCAC 59.312 50.000 0.00 0.00 0.00 4.16
6036 7022 2.687935 CCACTATTTGCATACCACCACC 59.312 50.000 0.00 0.00 0.00 4.61
6037 7023 3.351740 CACTATTTGCATACCACCACCA 58.648 45.455 0.00 0.00 0.00 4.17
6038 7024 3.953612 CACTATTTGCATACCACCACCAT 59.046 43.478 0.00 0.00 0.00 3.55
6039 7025 4.402155 CACTATTTGCATACCACCACCATT 59.598 41.667 0.00 0.00 0.00 3.16
6040 7026 3.891422 ATTTGCATACCACCACCATTG 57.109 42.857 0.00 0.00 0.00 2.82
6041 7027 0.894141 TTGCATACCACCACCATTGC 59.106 50.000 0.00 0.00 0.00 3.56
6042 7028 0.251519 TGCATACCACCACCATTGCA 60.252 50.000 0.00 0.00 37.73 4.08
6043 7029 1.113788 GCATACCACCACCATTGCAT 58.886 50.000 0.00 0.00 0.00 3.96
6093 7079 6.710744 GGACTTGAAGGTTCTTAAGAATGTGA 59.289 38.462 20.41 1.55 36.33 3.58
6099 7086 9.300681 TGAAGGTTCTTAAGAATGTGATGATTT 57.699 29.630 20.41 5.74 36.33 2.17
6140 7127 1.783284 TTCTGCTGTAGAAGTGTGCG 58.217 50.000 3.97 0.00 40.43 5.34
6151 7138 1.732259 GAAGTGTGCGGTACATTCTGG 59.268 52.381 1.41 0.00 42.24 3.86
6181 7169 2.027377 ACTGAGATGAGCTGGGTTCTTG 60.027 50.000 0.00 0.00 0.00 3.02
6234 7222 5.586243 CGAAAAGAATGATAAGCTGGAGGAA 59.414 40.000 0.00 0.00 0.00 3.36
6252 7240 2.499289 GGAACAGATGGCTTCTCTCTCA 59.501 50.000 0.00 0.00 29.93 3.27
6320 7322 5.342433 TGTTGCATTGCATAGAATTACTGC 58.658 37.500 12.95 0.63 38.76 4.40
6352 7354 1.834263 GGCTATCTGTGTTCCTGGACT 59.166 52.381 0.00 0.00 0.00 3.85
6353 7355 3.031736 GGCTATCTGTGTTCCTGGACTA 58.968 50.000 0.00 0.00 0.00 2.59
6354 7356 3.451178 GGCTATCTGTGTTCCTGGACTAA 59.549 47.826 0.00 0.00 0.00 2.24
6548 7560 0.370273 GGCAGCGTTCAGATGTTACG 59.630 55.000 0.00 0.00 38.76 3.18
6554 7581 0.997196 GTTCAGATGTTACGGCCGTC 59.003 55.000 38.01 22.80 0.00 4.79
6555 7582 0.108520 TTCAGATGTTACGGCCGTCC 60.109 55.000 38.01 26.49 0.00 4.79
6556 7583 1.216977 CAGATGTTACGGCCGTCCA 59.783 57.895 38.01 31.23 0.00 4.02
6557 7584 0.806102 CAGATGTTACGGCCGTCCAG 60.806 60.000 38.01 16.57 0.00 3.86
6558 7585 1.520787 GATGTTACGGCCGTCCAGG 60.521 63.158 38.01 1.77 44.97 4.45
6694 7721 2.586914 CAGCGGCATCAGCATCGA 60.587 61.111 1.45 0.00 44.61 3.59
6695 7722 2.587194 AGCGGCATCAGCATCGAC 60.587 61.111 1.45 0.00 44.61 4.20
6696 7723 3.643978 GCGGCATCAGCATCGACC 61.644 66.667 0.00 0.00 44.61 4.79
6785 7830 4.124351 TACTTCTCCACGCCGCCG 62.124 66.667 0.00 0.00 41.14 6.46
6809 7854 4.953868 TCGTCCACCACCAACGCG 62.954 66.667 3.53 3.53 36.40 6.01
6942 7987 5.393352 CGCCACATGGTTAGTAGTACACTTA 60.393 44.000 2.52 0.00 36.74 2.24
6970 8026 1.453928 CTCCCTTCCCGCCAAATCC 60.454 63.158 0.00 0.00 0.00 3.01
6996 8058 1.140452 AGCAGGCTGATCGATCAATGT 59.860 47.619 27.09 12.51 36.18 2.71
6997 8059 2.366590 AGCAGGCTGATCGATCAATGTA 59.633 45.455 27.09 5.91 36.18 2.29
7000 8062 4.563061 CAGGCTGATCGATCAATGTATGA 58.437 43.478 27.09 3.72 43.67 2.15
7001 8063 4.388165 CAGGCTGATCGATCAATGTATGAC 59.612 45.833 27.09 17.14 41.93 3.06
7002 8064 4.039609 AGGCTGATCGATCAATGTATGACA 59.960 41.667 27.09 2.93 41.93 3.58
7006 8081 6.587608 GCTGATCGATCAATGTATGACATGTA 59.412 38.462 27.09 0.50 41.93 2.29
7113 8189 2.607750 AGGGATGAGCACCGTGGT 60.608 61.111 2.07 2.07 0.00 4.16
7115 8191 2.436646 GGATGAGCACCGTGGTGG 60.437 66.667 20.00 2.98 45.49 4.61
7169 8252 0.612229 CTGAAGCTGAGCTCCTTCCA 59.388 55.000 22.42 13.46 38.25 3.53
7204 8287 6.196079 TGCATATGAGATACTACCACGATC 57.804 41.667 6.97 0.00 0.00 3.69
7205 8288 5.163754 TGCATATGAGATACTACCACGATCG 60.164 44.000 14.88 14.88 0.00 3.69
7206 8289 5.730847 GCATATGAGATACTACCACGATCGG 60.731 48.000 20.98 8.32 0.00 4.18
7207 8290 3.204306 TGAGATACTACCACGATCGGT 57.796 47.619 20.98 11.10 43.46 4.69
7208 8291 4.341366 TGAGATACTACCACGATCGGTA 57.659 45.455 20.98 11.56 40.67 4.02
7260 8343 6.885735 AAGATAAAAACTGCACAAACACAC 57.114 33.333 0.00 0.00 0.00 3.82
7280 8363 7.907389 ACACACAGAGAGGATAAGATAAAACA 58.093 34.615 0.00 0.00 0.00 2.83
7365 8456 4.393371 TCTCGATTACAGTCAGTCAGTCAG 59.607 45.833 0.00 0.00 0.00 3.51
7366 8457 4.072839 TCGATTACAGTCAGTCAGTCAGT 58.927 43.478 0.00 0.00 0.00 3.41
7367 8458 4.154375 TCGATTACAGTCAGTCAGTCAGTC 59.846 45.833 0.00 0.00 0.00 3.51
7368 8459 4.083271 CGATTACAGTCAGTCAGTCAGTCA 60.083 45.833 0.00 0.00 0.00 3.41
7369 8460 4.837896 TTACAGTCAGTCAGTCAGTCAG 57.162 45.455 0.00 0.00 0.00 3.51
7370 8461 2.660572 ACAGTCAGTCAGTCAGTCAGT 58.339 47.619 0.00 0.00 0.00 3.41
7371 8462 2.621055 ACAGTCAGTCAGTCAGTCAGTC 59.379 50.000 0.00 0.00 0.00 3.51
7372 8463 2.620585 CAGTCAGTCAGTCAGTCAGTCA 59.379 50.000 0.00 0.00 0.00 3.41
7373 8464 2.884012 AGTCAGTCAGTCAGTCAGTCAG 59.116 50.000 0.00 0.00 0.00 3.51
7374 8465 2.621055 GTCAGTCAGTCAGTCAGTCAGT 59.379 50.000 0.00 0.00 0.00 3.41
7375 8466 2.881513 TCAGTCAGTCAGTCAGTCAGTC 59.118 50.000 0.00 0.00 0.00 3.51
7376 8467 2.620585 CAGTCAGTCAGTCAGTCAGTCA 59.379 50.000 0.00 0.00 0.00 3.41
7377 8468 2.884012 AGTCAGTCAGTCAGTCAGTCAG 59.116 50.000 0.00 0.00 0.00 3.51
7378 8469 2.621055 GTCAGTCAGTCAGTCAGTCAGT 59.379 50.000 0.00 0.00 0.00 3.41
7379 8470 3.067461 GTCAGTCAGTCAGTCAGTCAGTT 59.933 47.826 0.00 0.00 0.00 3.16
7380 8471 4.276183 GTCAGTCAGTCAGTCAGTCAGTTA 59.724 45.833 0.00 0.00 0.00 2.24
7405 8496 3.181465 CCTTGGTTACAGTCCGATAGCAT 60.181 47.826 0.00 0.00 0.00 3.79
7433 8524 6.667981 TTGCAATTTATTCGTCGTCAAAAG 57.332 33.333 0.00 0.00 0.00 2.27
7495 8591 0.550914 TGACTTTGGTTGGTGGCTCT 59.449 50.000 0.00 0.00 0.00 4.09
7689 8793 1.372872 TGTGACACCGTGCATCTCG 60.373 57.895 2.45 0.00 0.00 4.04
7700 8804 1.037579 TGCATCTCGGGTCGATCACT 61.038 55.000 0.00 0.00 34.61 3.41
7736 8840 6.157211 ACTAGGTCGTTTGAATTCTGTGTAG 58.843 40.000 7.05 0.58 0.00 2.74
7748 8852 7.907389 TGAATTCTGTGTAGACCTCAAACTAT 58.093 34.615 7.05 0.00 31.21 2.12
7752 8995 7.956328 TCTGTGTAGACCTCAAACTATGTAT 57.044 36.000 0.00 0.00 0.00 2.29
7754 8997 9.121658 TCTGTGTAGACCTCAAACTATGTATAG 57.878 37.037 0.00 0.00 36.46 1.31
7756 8999 9.470399 TGTGTAGACCTCAAACTATGTATAGAA 57.530 33.333 5.93 0.00 34.50 2.10
7761 9004 8.258708 AGACCTCAAACTATGTATAGAAACACC 58.741 37.037 5.93 0.00 34.50 4.16
7762 9005 8.147244 ACCTCAAACTATGTATAGAAACACCT 57.853 34.615 5.93 0.00 34.50 4.00
7781 9024 5.221263 ACACCTATATAAACTCGCTGTCTGG 60.221 44.000 0.00 0.00 0.00 3.86
7795 9038 4.380023 CGCTGTCTGGCTATATCTTACTCC 60.380 50.000 0.00 0.00 0.00 3.85
7815 9058 6.206042 ACTCCTCTATGTAGACCTCCAAATT 58.794 40.000 0.00 0.00 0.00 1.82
7842 9086 1.625818 CCGCTAGCCTCCATCCTAAAT 59.374 52.381 9.66 0.00 0.00 1.40
7845 9089 4.649674 CCGCTAGCCTCCATCCTAAATATA 59.350 45.833 9.66 0.00 0.00 0.86
7847 9091 6.043411 CGCTAGCCTCCATCCTAAATATAAC 58.957 44.000 9.66 0.00 0.00 1.89
7850 9094 7.310734 GCTAGCCTCCATCCTAAATATAACAGT 60.311 40.741 2.29 0.00 0.00 3.55
7863 9107 6.441093 AATATAACAGTGGAGTGCAATGTG 57.559 37.500 18.54 3.55 30.95 3.21
7873 9117 1.134580 AGTGCAATGTGGATCCTCGAG 60.135 52.381 14.23 5.13 0.00 4.04
7875 9119 1.134699 TGCAATGTGGATCCTCGAGAC 60.135 52.381 15.71 3.91 0.00 3.36
7886 9130 0.179000 CCTCGAGACATTTCAGGGGG 59.821 60.000 15.71 0.00 0.00 5.40
7887 9131 0.905357 CTCGAGACATTTCAGGGGGT 59.095 55.000 6.58 0.00 0.00 4.95
7888 9132 0.613260 TCGAGACATTTCAGGGGGTG 59.387 55.000 0.00 0.00 0.00 4.61
7889 9133 1.026718 CGAGACATTTCAGGGGGTGC 61.027 60.000 0.00 0.00 0.00 5.01
7892 9136 0.324645 GACATTTCAGGGGGTGCCAT 60.325 55.000 0.00 0.00 0.00 4.40
7899 9143 0.394352 CAGGGGGTGCCATGTAAGTC 60.394 60.000 0.00 0.00 0.00 3.01
7942 9186 1.539388 CCACGCCTTCAAAGTGCAATA 59.461 47.619 0.00 0.00 34.79 1.90
7943 9187 2.030363 CCACGCCTTCAAAGTGCAATAA 60.030 45.455 0.00 0.00 34.79 1.40
7944 9188 3.367292 CCACGCCTTCAAAGTGCAATAAT 60.367 43.478 0.00 0.00 34.79 1.28
7945 9189 4.236935 CACGCCTTCAAAGTGCAATAATT 58.763 39.130 0.00 0.00 0.00 1.40
7953 9197 7.693951 CCTTCAAAGTGCAATAATTAAGACTCG 59.306 37.037 0.00 0.00 0.00 4.18
7957 9201 3.625764 GTGCAATAATTAAGACTCGCCCA 59.374 43.478 0.00 0.00 0.00 5.36
7979 9223 0.398696 TTCTGCCTTACCGCTTTGGA 59.601 50.000 0.00 0.00 42.00 3.53
7980 9224 0.036388 TCTGCCTTACCGCTTTGGAG 60.036 55.000 0.00 0.00 42.00 3.86
7982 9226 0.321298 TGCCTTACCGCTTTGGAGTC 60.321 55.000 0.00 0.00 42.00 3.36
7993 9238 4.184629 CGCTTTGGAGTCTAGCATTTAGT 58.815 43.478 11.21 0.00 34.62 2.24
8047 9292 2.807045 CTCGTGCTCGCACACCTC 60.807 66.667 20.54 0.00 46.47 3.85
8081 9326 1.297893 GCGCTTGCCTAATTCGCAG 60.298 57.895 0.00 0.00 44.50 5.18
8098 9343 1.671845 GCAGTGGTTGTTAACACCGAA 59.328 47.619 8.07 0.00 38.34 4.30
8143 9392 1.068474 GAACCACCACATCTTCGACG 58.932 55.000 0.00 0.00 0.00 5.12
8201 9450 6.433093 AGGGGATGAATAACAACAACTGTAAC 59.567 38.462 0.00 0.00 37.23 2.50
8252 9501 1.296727 GCGGACTATAAAGGTGTGCC 58.703 55.000 0.00 0.00 0.00 5.01
8265 9514 1.463444 GGTGTGCCTAAACTTGCTACG 59.537 52.381 0.00 0.00 0.00 3.51
8298 9547 6.455360 ACAAACCGATAAGATGAATGCAAT 57.545 33.333 0.00 0.00 0.00 3.56
8300 9549 8.169977 ACAAACCGATAAGATGAATGCAATAT 57.830 30.769 0.00 0.00 0.00 1.28
8317 9566 7.279750 TGCAATATCATGTAGTGAATGCAAT 57.720 32.000 11.48 0.00 44.62 3.56
8351 9600 9.797556 GACAAAAATAAACCACAACTAAAGAGT 57.202 29.630 0.00 0.00 37.59 3.24
8368 9617 6.572182 AAAGAGTTAGGGTTAGGGATAACC 57.428 41.667 8.39 8.39 46.63 2.85
8390 9639 4.444306 CCAGAGACTCTAGAGACGAGGATT 60.444 50.000 26.57 2.95 32.83 3.01
8412 9661 8.314021 GGATTTATCCCAATGTTCACTTCTTTT 58.686 33.333 0.00 0.00 41.20 2.27
8417 9666 4.584325 CCCAATGTTCACTTCTTTTGAGGA 59.416 41.667 0.00 0.00 0.00 3.71
8436 9685 2.549349 GGAAAGCTAGTCACCGTTGGAA 60.549 50.000 0.00 0.00 0.00 3.53
8443 9692 0.323629 GTCACCGTTGGAAGGATGGA 59.676 55.000 0.00 0.00 0.00 3.41
8471 9721 4.785376 ACCATGAAGACTCACCCTATTCTT 59.215 41.667 0.00 0.00 33.30 2.52
8472 9722 5.121811 CCATGAAGACTCACCCTATTCTTG 58.878 45.833 0.00 0.00 33.30 3.02
8512 9764 4.746535 TGTGTTTCTCAACCACTAGTGA 57.253 40.909 24.68 2.99 31.02 3.41
8526 9778 5.185454 CCACTAGTGATAAACCTTGATGCA 58.815 41.667 24.68 0.00 0.00 3.96
8527 9779 5.647658 CCACTAGTGATAAACCTTGATGCAA 59.352 40.000 24.68 0.00 0.00 4.08
8546 9798 3.368948 GCAACCTCCAAACCTTCACAAAA 60.369 43.478 0.00 0.00 0.00 2.44
8634 9886 4.586841 CCAAGAATAACAAGACCCACCAAA 59.413 41.667 0.00 0.00 0.00 3.28
8658 9911 5.243954 AGAAACTAGGGGATTCAACTTTTGC 59.756 40.000 0.00 0.00 0.00 3.68
8662 9915 3.575805 AGGGGATTCAACTTTTGCTTGA 58.424 40.909 0.00 0.00 0.00 3.02
8673 9926 5.438761 ACTTTTGCTTGATGGAAGTGTAC 57.561 39.130 0.00 0.00 33.73 2.90
8711 9964 9.933723 CTCTTTTCACTTCCCAAAATATTTGAT 57.066 29.630 0.39 0.00 0.00 2.57
8748 10002 7.716998 GGATATCTCCAAGTAATTTGAGCAAGA 59.283 37.037 2.05 0.00 41.64 3.02
8750 10004 6.560253 TCTCCAAGTAATTTGAGCAAGAAC 57.440 37.500 0.00 0.00 39.21 3.01
8759 10013 8.579006 AGTAATTTGAGCAAGAACAATGAATGA 58.421 29.630 0.00 0.00 0.00 2.57
8760 10014 7.884816 AATTTGAGCAAGAACAATGAATGAG 57.115 32.000 0.00 0.00 0.00 2.90
8761 10015 6.638096 TTTGAGCAAGAACAATGAATGAGA 57.362 33.333 0.00 0.00 0.00 3.27
8762 10016 5.874895 TGAGCAAGAACAATGAATGAGAG 57.125 39.130 0.00 0.00 0.00 3.20
8770 10024 7.479352 AGAACAATGAATGAGAGAGAGAGAA 57.521 36.000 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
627 642 4.962836 GCTGTGGGCCTGTGCTGT 62.963 66.667 4.53 0.00 37.74 4.40
628 643 4.960866 TGCTGTGGGCCTGTGCTG 62.961 66.667 4.53 0.00 40.92 4.41
629 644 4.962836 GTGCTGTGGGCCTGTGCT 62.963 66.667 4.53 0.00 40.92 4.40
632 647 4.586235 GTGGTGCTGTGGGCCTGT 62.586 66.667 4.53 0.00 40.92 4.00
633 648 4.584518 TGTGGTGCTGTGGGCCTG 62.585 66.667 4.53 0.00 40.92 4.85
676 793 2.808919 CAGGACAGTGTAGAGGAAGGA 58.191 52.381 0.00 0.00 0.00 3.36
677 794 1.205893 GCAGGACAGTGTAGAGGAAGG 59.794 57.143 0.00 0.00 0.00 3.46
678 795 1.205893 GGCAGGACAGTGTAGAGGAAG 59.794 57.143 0.00 0.00 0.00 3.46
679 796 1.267121 GGCAGGACAGTGTAGAGGAA 58.733 55.000 0.00 0.00 0.00 3.36
680 797 0.114364 TGGCAGGACAGTGTAGAGGA 59.886 55.000 0.00 0.00 0.00 3.71
683 800 2.497675 GAGAATGGCAGGACAGTGTAGA 59.502 50.000 0.00 0.00 0.00 2.59
697 814 3.567164 GCAGAGAGAGAGAGAGAGAATGG 59.433 52.174 0.00 0.00 0.00 3.16
699 816 4.458397 CTGCAGAGAGAGAGAGAGAGAAT 58.542 47.826 8.42 0.00 0.00 2.40
712 841 2.268280 CCTGTGGCCTGCAGAGAG 59.732 66.667 23.42 2.90 36.12 3.20
810 973 1.614413 GATCTTGCTACGTAGGGGGAG 59.386 57.143 23.47 0.07 0.00 4.30
811 974 1.700955 GATCTTGCTACGTAGGGGGA 58.299 55.000 23.47 0.00 0.00 4.81
812 975 0.680061 GGATCTTGCTACGTAGGGGG 59.320 60.000 23.47 0.00 0.00 5.40
814 977 1.269831 GCAGGATCTTGCTACGTAGGG 60.270 57.143 23.47 0.79 40.89 3.53
816 979 2.464865 GTGCAGGATCTTGCTACGTAG 58.535 52.381 27.58 18.47 44.38 3.51
817 980 1.202256 CGTGCAGGATCTTGCTACGTA 60.202 52.381 29.01 12.57 44.38 3.57
818 981 0.458543 CGTGCAGGATCTTGCTACGT 60.459 55.000 29.01 0.00 44.38 3.57
820 983 0.740868 TGCGTGCAGGATCTTGCTAC 60.741 55.000 27.58 21.49 44.38 3.58
821 984 0.740868 GTGCGTGCAGGATCTTGCTA 60.741 55.000 27.58 13.37 44.38 3.49
861 1053 2.480845 GGCCGCGATTAAATAGAGTGT 58.519 47.619 8.23 0.00 0.00 3.55
863 1055 1.779569 CGGCCGCGATTAAATAGAGT 58.220 50.000 14.67 0.00 0.00 3.24
864 1056 0.438830 GCGGCCGCGATTAAATAGAG 59.561 55.000 37.24 0.00 0.00 2.43
866 1058 1.495951 GGCGGCCGCGATTAAATAG 59.504 57.895 41.05 2.32 43.06 1.73
882 1074 1.216710 GGATGGATCGATCTCCGGC 59.783 63.158 23.96 8.38 38.21 6.13
933 1133 3.866582 GGTGCGAGGCTAGGGCAT 61.867 66.667 10.06 0.00 39.14 4.40
936 1136 2.478335 TTTTGGGTGCGAGGCTAGGG 62.478 60.000 0.00 0.00 0.00 3.53
960 1202 0.329261 TGGGTGGATCTGAAAGGCTG 59.671 55.000 0.00 0.00 0.00 4.85
976 1218 2.965716 GAACTGGGCGGATGGATGGG 62.966 65.000 0.00 0.00 0.00 4.00
1009 1255 4.705337 TTAAAATAAATCAAGCGGGCGT 57.295 36.364 0.00 0.00 0.00 5.68
1037 1283 2.310647 GAGGTTTGGTGGGGAGGAATAA 59.689 50.000 0.00 0.00 0.00 1.40
1038 1284 1.920351 GAGGTTTGGTGGGGAGGAATA 59.080 52.381 0.00 0.00 0.00 1.75
1039 1285 0.704664 GAGGTTTGGTGGGGAGGAAT 59.295 55.000 0.00 0.00 0.00 3.01
1040 1286 1.774894 CGAGGTTTGGTGGGGAGGAA 61.775 60.000 0.00 0.00 0.00 3.36
1055 1301 2.960129 GTACGGAATGCGGCGAGG 60.960 66.667 12.98 0.00 0.00 4.63
1080 1326 2.373502 GAGGGGAGGGGAGTGAAATATG 59.626 54.545 0.00 0.00 0.00 1.78
1087 1333 4.825679 GGGGAGGGGAGGGGAGTG 62.826 77.778 0.00 0.00 0.00 3.51
1089 1335 4.179599 GAGGGGAGGGGAGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
1196 1452 1.191647 CGAAAACCTTGGAGACGAACG 59.808 52.381 0.00 0.00 0.00 3.95
1244 1500 2.095252 GGCGAACACGAGAGGAAGC 61.095 63.158 0.00 0.00 0.00 3.86
1248 1509 2.811317 GCAGGCGAACACGAGAGG 60.811 66.667 0.00 0.00 0.00 3.69
1274 1535 0.457853 TAGCTAGCGCCACAGAAACG 60.458 55.000 9.55 0.00 36.60 3.60
1276 1537 1.182667 TCTAGCTAGCGCCACAGAAA 58.817 50.000 16.35 0.00 36.60 2.52
1281 1542 1.182385 AGGGATCTAGCTAGCGCCAC 61.182 60.000 24.25 16.75 36.60 5.01
1284 1545 1.201414 GAGAAGGGATCTAGCTAGCGC 59.799 57.143 16.35 11.09 38.96 5.92
1285 1546 1.816224 GGAGAAGGGATCTAGCTAGCG 59.184 57.143 16.35 0.00 38.96 4.26
1287 1548 3.426787 TCGGAGAAGGGATCTAGCTAG 57.573 52.381 15.01 15.01 38.96 3.42
1288 1549 3.308545 GGATCGGAGAAGGGATCTAGCTA 60.309 52.174 0.00 0.00 43.58 3.32
1289 1550 2.556559 GGATCGGAGAAGGGATCTAGCT 60.557 54.545 0.00 0.00 43.58 3.32
1290 1551 1.822371 GGATCGGAGAAGGGATCTAGC 59.178 57.143 0.00 0.00 43.58 3.42
1291 1552 3.352648 GAGGATCGGAGAAGGGATCTAG 58.647 54.545 0.00 0.00 43.58 2.43
1292 1553 3.443145 GAGGATCGGAGAAGGGATCTA 57.557 52.381 0.00 0.00 43.58 1.98
1323 1584 1.402613 CTTTTGAAAACCACGGACCGT 59.597 47.619 15.37 15.37 42.36 4.83
1329 1590 1.536462 CGGCGCTTTTGAAAACCACG 61.536 55.000 7.64 0.00 0.00 4.94
1360 1621 3.751175 CACGCAAGAGACCATAGGAAAAA 59.249 43.478 0.00 0.00 43.62 1.94
1368 1629 1.148310 CGAAACACGCAAGAGACCAT 58.852 50.000 0.00 0.00 43.62 3.55
1404 1675 2.473760 GCTGCTGCTCCATGCTCTG 61.474 63.158 8.53 0.00 43.37 3.35
1405 1676 2.124653 GCTGCTGCTCCATGCTCT 60.125 61.111 8.53 0.00 43.37 4.09
1508 1779 3.386486 GAAAAACCCAACCGAAATGGAC 58.614 45.455 3.07 0.00 42.00 4.02
1632 1906 4.436998 CCGGAGTGTGGAGCGACC 62.437 72.222 0.00 0.00 39.54 4.79
1679 1959 2.111460 TCCCAAAACACGACGGGG 59.889 61.111 0.43 0.00 39.34 5.73
1713 1993 0.581529 CAGAAGAAACAAGCGTGCGA 59.418 50.000 0.00 0.00 0.00 5.10
1718 1998 0.593128 CCCCACAGAAGAAACAAGCG 59.407 55.000 0.00 0.00 0.00 4.68
1723 2003 0.605589 CCGACCCCCACAGAAGAAAC 60.606 60.000 0.00 0.00 0.00 2.78
1725 2005 2.890766 GCCGACCCCCACAGAAGAA 61.891 63.158 0.00 0.00 0.00 2.52
1727 2007 2.484287 ATTGCCGACCCCCACAGAAG 62.484 60.000 0.00 0.00 0.00 2.85
1730 2010 2.751436 CATTGCCGACCCCCACAG 60.751 66.667 0.00 0.00 0.00 3.66
1731 2011 4.358841 CCATTGCCGACCCCCACA 62.359 66.667 0.00 0.00 0.00 4.17
1776 2056 5.066375 TGCCAATCAAATCGAATCGAAGAAT 59.934 36.000 10.12 0.00 43.58 2.40
1778 2058 3.938334 TGCCAATCAAATCGAATCGAAGA 59.062 39.130 10.12 8.78 39.99 2.87
1779 2059 4.277257 TGCCAATCAAATCGAATCGAAG 57.723 40.909 10.12 3.04 39.99 3.79
1826 2137 2.103771 CGTCCATCCATCCAAGATCAGT 59.896 50.000 0.00 0.00 0.00 3.41
1828 2139 2.366590 CTCGTCCATCCATCCAAGATCA 59.633 50.000 0.00 0.00 0.00 2.92
1843 2154 1.636988 CACGGATTAACCACTCGTCC 58.363 55.000 0.00 0.00 38.90 4.79
1863 2174 0.940991 CTGCCGCAAGAACAAAAGCC 60.941 55.000 0.00 0.00 43.02 4.35
2085 2406 7.009540 CACACACACACACAGACAGTATATATG 59.990 40.741 0.00 0.00 0.00 1.78
2126 2915 1.548081 TCCCGTCGTATCAACCTCAA 58.452 50.000 0.00 0.00 0.00 3.02
2127 2916 1.407618 CATCCCGTCGTATCAACCTCA 59.592 52.381 0.00 0.00 0.00 3.86
2128 2917 1.407979 ACATCCCGTCGTATCAACCTC 59.592 52.381 0.00 0.00 0.00 3.85
2129 2918 1.481871 ACATCCCGTCGTATCAACCT 58.518 50.000 0.00 0.00 0.00 3.50
2130 2919 2.304751 AACATCCCGTCGTATCAACC 57.695 50.000 0.00 0.00 0.00 3.77
2131 2920 5.734311 CATAAAACATCCCGTCGTATCAAC 58.266 41.667 0.00 0.00 0.00 3.18
2203 2992 1.002366 CATCTACCACTTCACTGCGC 58.998 55.000 0.00 0.00 0.00 6.09
2204 2993 1.204704 TCCATCTACCACTTCACTGCG 59.795 52.381 0.00 0.00 0.00 5.18
2205 2994 3.118629 TGATCCATCTACCACTTCACTGC 60.119 47.826 0.00 0.00 0.00 4.40
2206 2995 4.161189 AGTGATCCATCTACCACTTCACTG 59.839 45.833 2.16 0.00 40.42 3.66
2209 2998 5.519808 ACTAGTGATCCATCTACCACTTCA 58.480 41.667 0.00 0.00 40.07 3.02
2274 3067 5.621634 CACGTACACACATAATTTTCGCAAA 59.378 36.000 0.00 0.00 0.00 3.68
2277 3070 4.704457 ACACGTACACACATAATTTTCGC 58.296 39.130 0.00 0.00 0.00 4.70
2283 3076 3.403968 TGGCAACACGTACACACATAAT 58.596 40.909 0.00 0.00 46.17 1.28
2304 3097 3.108376 ACTTTAGCTGCCTACTAGCCTT 58.892 45.455 0.00 0.00 42.07 4.35
2306 3099 3.890147 TCTACTTTAGCTGCCTACTAGCC 59.110 47.826 0.00 0.00 42.07 3.93
2308 3101 6.375377 CGATTCTACTTTAGCTGCCTACTAG 58.625 44.000 0.00 0.00 0.00 2.57
2336 3135 2.880890 ACTATCCGAAATGCAATCCAGC 59.119 45.455 0.00 0.00 0.00 4.85
2355 3154 8.283708 ACTAGTAGCCCTTCTATCTTTTCTACT 58.716 37.037 0.00 0.00 38.93 2.57
2356 3155 8.354426 CACTAGTAGCCCTTCTATCTTTTCTAC 58.646 40.741 0.00 0.00 0.00 2.59
2357 3156 7.014422 GCACTAGTAGCCCTTCTATCTTTTCTA 59.986 40.741 0.00 0.00 0.00 2.10
2358 3157 6.183360 GCACTAGTAGCCCTTCTATCTTTTCT 60.183 42.308 0.00 0.00 0.00 2.52
2367 3166 1.139853 GCATGCACTAGTAGCCCTTCT 59.860 52.381 14.21 0.00 0.00 2.85
2394 3193 1.306997 ATGGTGGTCCGGATCTGGT 60.307 57.895 20.32 0.00 36.30 4.00
2395 3194 1.146930 CATGGTGGTCCGGATCTGG 59.853 63.158 17.40 15.09 36.30 3.86
2396 3195 1.524621 GCATGGTGGTCCGGATCTG 60.525 63.158 17.40 6.81 36.30 2.90
2408 3207 6.549433 AATCACATTCCATTTTAGCATGGT 57.451 33.333 1.62 1.62 43.94 3.55
2469 3299 6.913170 ACAACTCCAGTTAGCAACATTAATG 58.087 36.000 14.01 14.01 36.32 1.90
2504 3335 4.074970 CACCAAACAGGAGCATCTTTAGT 58.925 43.478 0.00 0.00 41.22 2.24
2538 3377 4.102210 ACAGACCATCATAATGACAGGAGG 59.898 45.833 0.00 0.00 34.61 4.30
2542 3381 6.764560 TCATCAACAGACCATCATAATGACAG 59.235 38.462 0.00 0.00 34.61 3.51
2578 3421 1.603455 ACCCAAAGATGCACCGGTG 60.603 57.895 30.66 30.66 0.00 4.94
2579 3422 1.603455 CACCCAAAGATGCACCGGT 60.603 57.895 0.00 0.00 0.00 5.28
2582 3425 3.776158 TGCACCCAAAGATGCACC 58.224 55.556 0.00 0.00 46.63 5.01
2589 3434 1.915141 AGGATCAGTTGCACCCAAAG 58.085 50.000 0.00 0.00 31.68 2.77
2649 3494 7.534085 TTGTGTTTTCAGTGTACTACTCTTG 57.466 36.000 0.00 0.00 37.60 3.02
2666 3518 6.555315 CAAGCTACTTTCAGTCTTTGTGTTT 58.445 36.000 0.00 0.00 0.00 2.83
2669 3521 4.274459 AGCAAGCTACTTTCAGTCTTTGTG 59.726 41.667 0.00 0.00 0.00 3.33
2729 3581 5.939883 TGCAACAATAACTAGTGATTCAGCT 59.060 36.000 16.21 0.00 0.00 4.24
2730 3582 6.182039 TGCAACAATAACTAGTGATTCAGC 57.818 37.500 2.09 7.90 0.00 4.26
2731 3583 7.810658 AGTTGCAACAATAACTAGTGATTCAG 58.189 34.615 30.11 0.00 35.50 3.02
2732 3584 7.744087 AGTTGCAACAATAACTAGTGATTCA 57.256 32.000 30.11 0.00 35.50 2.57
2795 3651 4.580551 GCCATGCAAGCATCCGCC 62.581 66.667 4.24 0.00 39.83 6.13
2826 3682 5.349817 ACAATGACAGCTGAAATCGAACTAG 59.650 40.000 23.35 0.57 0.00 2.57
2851 3707 4.141390 ACTGGACACATTTTCAGACTCCTT 60.141 41.667 0.00 0.00 0.00 3.36
2852 3708 3.392616 ACTGGACACATTTTCAGACTCCT 59.607 43.478 0.00 0.00 0.00 3.69
2853 3709 3.744660 ACTGGACACATTTTCAGACTCC 58.255 45.455 0.00 0.00 0.00 3.85
3009 3917 1.341482 ACACCACACATTCCAACCACA 60.341 47.619 0.00 0.00 0.00 4.17
3010 3918 1.398692 ACACCACACATTCCAACCAC 58.601 50.000 0.00 0.00 0.00 4.16
3011 3919 1.753649 CAACACCACACATTCCAACCA 59.246 47.619 0.00 0.00 0.00 3.67
3012 3920 2.028130 TCAACACCACACATTCCAACC 58.972 47.619 0.00 0.00 0.00 3.77
3013 3921 3.791973 TTCAACACCACACATTCCAAC 57.208 42.857 0.00 0.00 0.00 3.77
3014 3922 4.161189 ACATTTCAACACCACACATTCCAA 59.839 37.500 0.00 0.00 0.00 3.53
3015 3923 3.703556 ACATTTCAACACCACACATTCCA 59.296 39.130 0.00 0.00 0.00 3.53
3016 3924 4.050553 CACATTTCAACACCACACATTCC 58.949 43.478 0.00 0.00 0.00 3.01
3017 3925 4.681744 ACACATTTCAACACCACACATTC 58.318 39.130 0.00 0.00 0.00 2.67
3018 3926 4.734398 ACACATTTCAACACCACACATT 57.266 36.364 0.00 0.00 0.00 2.71
3019 3927 4.734398 AACACATTTCAACACCACACAT 57.266 36.364 0.00 0.00 0.00 3.21
3020 3928 4.219507 AGAAACACATTTCAACACCACACA 59.780 37.500 2.86 0.00 45.78 3.72
3021 3929 4.743493 AGAAACACATTTCAACACCACAC 58.257 39.130 2.86 0.00 45.78 3.82
3064 3985 2.589157 GGGTGGACGTGTGATGGGA 61.589 63.158 0.00 0.00 0.00 4.37
3157 4080 1.067071 GGTTGTACGGTCAGAAGAGGG 60.067 57.143 0.00 0.00 0.00 4.30
3161 4084 2.729882 CGAAAGGTTGTACGGTCAGAAG 59.270 50.000 0.00 0.00 0.00 2.85
3169 4092 1.068474 CCTCTGCGAAAGGTTGTACG 58.932 55.000 0.00 0.00 0.00 3.67
3250 4173 2.060275 TCTTGGGGCTGCTATCATCAT 58.940 47.619 0.00 0.00 0.00 2.45
3251 4174 1.510492 TCTTGGGGCTGCTATCATCA 58.490 50.000 0.00 0.00 0.00 3.07
3252 4175 2.617532 GGATCTTGGGGCTGCTATCATC 60.618 54.545 0.00 0.00 0.00 2.92
3362 4285 2.028130 TGCACAAACCGTTCCATTTCT 58.972 42.857 0.00 0.00 0.00 2.52
3365 4288 2.288763 GGATTGCACAAACCGTTCCATT 60.289 45.455 0.00 0.00 0.00 3.16
3374 4297 5.812127 GGAATTAATGGAGGATTGCACAAAC 59.188 40.000 0.00 0.00 0.00 2.93
3418 4344 2.722071 TCACCGCGTGAAAAACAATTC 58.278 42.857 4.92 0.00 39.78 2.17
3424 4350 1.405821 ACCAAATCACCGCGTGAAAAA 59.594 42.857 13.81 0.00 45.96 1.94
3432 4358 0.605319 TGACCAGACCAAATCACCGC 60.605 55.000 0.00 0.00 0.00 5.68
3433 4359 1.442769 CTGACCAGACCAAATCACCG 58.557 55.000 0.00 0.00 0.00 4.94
3494 4420 5.062528 GGACTTGAGATGGATTGGAGATTC 58.937 45.833 0.00 0.00 0.00 2.52
3672 4603 0.108662 TGTGCTCGCTCACCTACATG 60.109 55.000 0.00 0.00 36.17 3.21
3688 4619 1.372872 TGATGTCGTGGCTCGTGTG 60.373 57.895 8.94 0.00 40.80 3.82
3938 4869 4.280494 ACGACAGCGCGTCCTGTT 62.280 61.111 18.40 3.50 45.55 3.16
4197 5131 3.087666 GCTTCCCTCTGCCTCCTCG 62.088 68.421 0.00 0.00 0.00 4.63
4200 5134 1.077858 CTTGCTTCCCTCTGCCTCC 60.078 63.158 0.00 0.00 0.00 4.30
4243 5177 3.866651 TGTATGGCTTGCTCTTCTTCTC 58.133 45.455 0.00 0.00 0.00 2.87
4258 5192 2.755103 GTTTCTTGGGGCTCTTGTATGG 59.245 50.000 0.00 0.00 0.00 2.74
4278 5212 3.616721 ACGTGGCGCCTCTTCTGT 61.617 61.111 29.70 14.28 0.00 3.41
4470 5404 1.915769 GAGCAGGTGGTCCAGGAGT 60.916 63.158 0.00 0.00 36.62 3.85
4781 5734 1.584483 CATTGCAGGCGAACGCATC 60.584 57.895 20.16 9.08 44.11 3.91
4810 5763 4.284234 AGGGGAACAATGTTGGAAATCAAG 59.716 41.667 2.20 0.00 35.80 3.02
4868 5821 1.134280 CCCAGCTCCACCATGTTAGAG 60.134 57.143 0.00 0.00 0.00 2.43
4943 5896 9.480861 TCGACAGGATCTTATAATATGAAGGAT 57.519 33.333 0.00 0.00 0.00 3.24
4979 5952 2.555227 GGAACAGAGGGAAATGCTTGGA 60.555 50.000 0.00 0.00 0.00 3.53
5071 6045 3.617263 CGTATTTTGTCCCGGAAGAGAAG 59.383 47.826 0.73 0.00 0.00 2.85
5079 6053 1.538075 ACTTTGCGTATTTTGTCCCGG 59.462 47.619 0.00 0.00 0.00 5.73
5085 6059 8.055609 TCATGTTGTTAACTTTGCGTATTTTG 57.944 30.769 7.22 0.00 0.00 2.44
5086 6060 8.810652 ATCATGTTGTTAACTTTGCGTATTTT 57.189 26.923 7.22 0.00 0.00 1.82
5090 6064 7.804129 GGTAAATCATGTTGTTAACTTTGCGTA 59.196 33.333 7.22 0.00 0.00 4.42
5093 6067 6.367695 GGGGTAAATCATGTTGTTAACTTTGC 59.632 38.462 7.22 1.07 0.00 3.68
5139 6114 4.096984 ACTGAAGAAACTGCAAACTTCCTG 59.903 41.667 14.60 11.38 38.22 3.86
5260 6235 6.320518 TGAGAAAGTACTAAAGAGGGGAAGA 58.679 40.000 0.00 0.00 0.00 2.87
5269 6244 9.796120 CCTTCATAGACTGAGAAAGTACTAAAG 57.204 37.037 0.00 0.00 40.07 1.85
5270 6245 9.310449 ACCTTCATAGACTGAGAAAGTACTAAA 57.690 33.333 0.00 0.00 40.07 1.85
5276 6251 4.284490 TGCACCTTCATAGACTGAGAAAGT 59.716 41.667 0.00 0.00 43.85 2.66
5317 6292 4.301072 TTTTCCTCACAATGTAGGGAGG 57.699 45.455 10.90 10.90 46.61 4.30
5358 6333 1.683385 AGAAGTGCAGTTCCAAAAGGC 59.317 47.619 26.94 4.15 0.00 4.35
5418 6393 6.449830 AGGAAGTATGTCCTTAACACCTTT 57.550 37.500 0.00 0.00 46.42 3.11
5430 6405 5.407407 TTTCTGGACAGAGGAAGTATGTC 57.593 43.478 1.92 0.00 45.24 3.06
5438 6413 4.838423 TGACAAGTATTTCTGGACAGAGGA 59.162 41.667 1.92 0.00 38.88 3.71
5440 6415 6.401394 TGATGACAAGTATTTCTGGACAGAG 58.599 40.000 1.92 0.00 38.88 3.35
5441 6416 6.358974 TGATGACAAGTATTTCTGGACAGA 57.641 37.500 0.00 0.00 35.27 3.41
5442 6417 7.439157 TTTGATGACAAGTATTTCTGGACAG 57.561 36.000 0.00 0.00 37.32 3.51
5443 6418 7.815840 TTTTGATGACAAGTATTTCTGGACA 57.184 32.000 0.00 0.00 37.32 4.02
5444 6419 7.756722 CCATTTTGATGACAAGTATTTCTGGAC 59.243 37.037 0.00 0.00 37.32 4.02
5445 6420 7.669304 TCCATTTTGATGACAAGTATTTCTGGA 59.331 33.333 0.00 0.00 37.32 3.86
5446 6421 7.829725 TCCATTTTGATGACAAGTATTTCTGG 58.170 34.615 0.00 0.00 37.32 3.86
5500 6475 9.607333 TGGATAAAAGAGGATGTATCTAGATGT 57.393 33.333 15.79 1.25 0.00 3.06
5509 6484 9.919416 TCATCAAAATGGATAAAAGAGGATGTA 57.081 29.630 0.00 0.00 33.42 2.29
5510 6485 8.689972 GTCATCAAAATGGATAAAAGAGGATGT 58.310 33.333 0.00 0.00 33.42 3.06
5511 6486 8.689061 TGTCATCAAAATGGATAAAAGAGGATG 58.311 33.333 0.00 0.00 33.42 3.51
5512 6487 8.827832 TGTCATCAAAATGGATAAAAGAGGAT 57.172 30.769 0.00 0.00 33.42 3.24
5513 6488 8.648698 TTGTCATCAAAATGGATAAAAGAGGA 57.351 30.769 0.00 0.00 33.42 3.71
5514 6489 8.526147 ACTTGTCATCAAAATGGATAAAAGAGG 58.474 33.333 0.00 0.00 33.42 3.69
5522 6497 9.865321 CTGAAAATACTTGTCATCAAAATGGAT 57.135 29.630 0.00 0.00 33.42 3.41
5523 6498 9.076781 TCTGAAAATACTTGTCATCAAAATGGA 57.923 29.630 0.00 0.00 33.42 3.41
5524 6499 9.132521 GTCTGAAAATACTTGTCATCAAAATGG 57.867 33.333 0.00 0.00 33.42 3.16
5525 6500 8.843733 CGTCTGAAAATACTTGTCATCAAAATG 58.156 33.333 0.00 0.00 32.87 2.32
5526 6501 8.023128 CCGTCTGAAAATACTTGTCATCAAAAT 58.977 33.333 0.00 0.00 32.87 1.82
5527 6502 7.227711 TCCGTCTGAAAATACTTGTCATCAAAA 59.772 33.333 0.00 0.00 32.87 2.44
5528 6503 6.708502 TCCGTCTGAAAATACTTGTCATCAAA 59.291 34.615 0.00 0.00 32.87 2.69
5529 6504 6.227522 TCCGTCTGAAAATACTTGTCATCAA 58.772 36.000 0.00 0.00 0.00 2.57
5530 6505 5.789521 TCCGTCTGAAAATACTTGTCATCA 58.210 37.500 0.00 0.00 0.00 3.07
5531 6506 6.183360 CCTTCCGTCTGAAAATACTTGTCATC 60.183 42.308 0.00 0.00 31.06 2.92
5532 6507 5.643777 CCTTCCGTCTGAAAATACTTGTCAT 59.356 40.000 0.00 0.00 31.06 3.06
5533 6508 4.994852 CCTTCCGTCTGAAAATACTTGTCA 59.005 41.667 0.00 0.00 31.06 3.58
5534 6509 5.235516 TCCTTCCGTCTGAAAATACTTGTC 58.764 41.667 0.00 0.00 31.06 3.18
5535 6510 5.221661 ACTCCTTCCGTCTGAAAATACTTGT 60.222 40.000 0.00 0.00 31.06 3.16
5536 6511 5.238583 ACTCCTTCCGTCTGAAAATACTTG 58.761 41.667 0.00 0.00 31.06 3.16
5537 6512 5.485209 ACTCCTTCCGTCTGAAAATACTT 57.515 39.130 0.00 0.00 31.06 2.24
5538 6513 5.715753 ACTACTCCTTCCGTCTGAAAATACT 59.284 40.000 0.00 0.00 31.06 2.12
5539 6514 5.963594 ACTACTCCTTCCGTCTGAAAATAC 58.036 41.667 0.00 0.00 31.06 1.89
5540 6515 6.600882 AACTACTCCTTCCGTCTGAAAATA 57.399 37.500 0.00 0.00 31.06 1.40
5541 6516 5.485209 AACTACTCCTTCCGTCTGAAAAT 57.515 39.130 0.00 0.00 31.06 1.82
5542 6517 4.950205 AACTACTCCTTCCGTCTGAAAA 57.050 40.909 0.00 0.00 31.06 2.29
5543 6518 4.950205 AAACTACTCCTTCCGTCTGAAA 57.050 40.909 0.00 0.00 31.06 2.69
5544 6519 4.950205 AAAACTACTCCTTCCGTCTGAA 57.050 40.909 0.00 0.00 0.00 3.02
5545 6520 4.950205 AAAAACTACTCCTTCCGTCTGA 57.050 40.909 0.00 0.00 0.00 3.27
5546 6521 7.668525 AATTAAAAACTACTCCTTCCGTCTG 57.331 36.000 0.00 0.00 0.00 3.51
5547 6522 9.433153 CTTAATTAAAAACTACTCCTTCCGTCT 57.567 33.333 0.00 0.00 0.00 4.18
5548 6523 9.428097 TCTTAATTAAAAACTACTCCTTCCGTC 57.572 33.333 0.00 0.00 0.00 4.79
5549 6524 9.783081 TTCTTAATTAAAAACTACTCCTTCCGT 57.217 29.630 0.00 0.00 0.00 4.69
5606 6581 7.039363 AGCAAAGGAGTGGCTTAGATATAGTAG 60.039 40.741 0.00 0.00 33.21 2.57
5734 6710 7.136822 TGCTTAGTATGGGATGAACTGTTAT 57.863 36.000 0.00 0.00 0.00 1.89
5750 6726 8.582437 AGACTAACATGTACAGTTTGCTTAGTA 58.418 33.333 12.81 0.00 0.00 1.82
5847 6823 9.546428 GCTGACCAATGTGCATATACATATATA 57.454 33.333 0.00 0.00 40.24 0.86
5848 6824 8.048514 TGCTGACCAATGTGCATATACATATAT 58.951 33.333 0.00 0.00 40.24 0.86
5849 6825 7.393216 TGCTGACCAATGTGCATATACATATA 58.607 34.615 0.00 0.00 40.24 0.86
5850 6826 6.240145 TGCTGACCAATGTGCATATACATAT 58.760 36.000 0.00 0.00 40.24 1.78
5854 6833 5.443185 AATGCTGACCAATGTGCATATAC 57.557 39.130 0.00 0.00 44.15 1.47
5994 6977 4.458989 TGGGAATTCAGTTAGCAACATGAC 59.541 41.667 7.93 0.00 0.00 3.06
6035 7021 6.387041 AGATAGACATCACAAATGCAATGG 57.613 37.500 7.65 0.00 33.21 3.16
6036 7022 9.000486 AGATAGATAGACATCACAAATGCAATG 58.000 33.333 0.00 0.00 33.21 2.82
6039 7025 9.481340 GTTAGATAGATAGACATCACAAATGCA 57.519 33.333 0.00 0.00 33.21 3.96
6040 7026 9.703892 AGTTAGATAGATAGACATCACAAATGC 57.296 33.333 0.00 0.00 33.21 3.56
6093 7079 5.296283 GCAGAGAACATGCTGACTAAATCAT 59.704 40.000 2.61 0.00 40.59 2.45
6133 7120 0.673644 GCCAGAATGTACCGCACACT 60.674 55.000 0.00 0.00 40.86 3.55
6136 7123 0.673644 ACTGCCAGAATGTACCGCAC 60.674 55.000 0.00 0.00 0.00 5.34
6140 7127 4.154195 CAGTTAACACTGCCAGAATGTACC 59.846 45.833 8.61 0.00 44.16 3.34
6210 7198 5.118990 TCCTCCAGCTTATCATTCTTTTCG 58.881 41.667 0.00 0.00 0.00 3.46
6234 7222 2.093553 GCTTGAGAGAGAAGCCATCTGT 60.094 50.000 0.00 0.00 40.03 3.41
6252 7240 5.635120 ACCTTTAAAGACATGAAGGAGCTT 58.365 37.500 16.98 0.00 40.86 3.74
6320 7322 3.317711 CACAGATAGCCTAGGACAGAGTG 59.682 52.174 14.75 9.43 0.00 3.51
6560 7587 4.521062 CTCTTCTCGCCGGCCTGG 62.521 72.222 23.46 11.37 42.50 4.45
6561 7588 4.521062 CCTCTTCTCGCCGGCCTG 62.521 72.222 23.46 14.27 0.00 4.85
6562 7589 4.761058 TCCTCTTCTCGCCGGCCT 62.761 66.667 23.46 0.00 0.00 5.19
6563 7590 4.516195 GTCCTCTTCTCGCCGGCC 62.516 72.222 23.46 2.84 0.00 6.13
6564 7591 4.856607 CGTCCTCTTCTCGCCGGC 62.857 72.222 19.07 19.07 0.00 6.13
6565 7592 4.194720 CCGTCCTCTTCTCGCCGG 62.195 72.222 0.00 0.00 0.00 6.13
6566 7593 4.856607 GCCGTCCTCTTCTCGCCG 62.857 72.222 0.00 0.00 0.00 6.46
6567 7594 4.856607 CGCCGTCCTCTTCTCGCC 62.857 72.222 0.00 0.00 0.00 5.54
6568 7595 3.743091 CTCGCCGTCCTCTTCTCGC 62.743 68.421 0.00 0.00 0.00 5.03
6694 7721 4.204028 GCTGGTGGTGGTGGTGGT 62.204 66.667 0.00 0.00 0.00 4.16
6695 7722 3.850098 GAGCTGGTGGTGGTGGTGG 62.850 68.421 0.00 0.00 0.00 4.61
6696 7723 2.281761 GAGCTGGTGGTGGTGGTG 60.282 66.667 0.00 0.00 0.00 4.17
6942 7987 0.030603 GGGAAGGGAGATGGAGAGGT 60.031 60.000 0.00 0.00 0.00 3.85
6948 7993 2.210144 TTTGGCGGGAAGGGAGATGG 62.210 60.000 0.00 0.00 0.00 3.51
6970 8026 2.470362 CGATCAGCCTGCTGCCTTG 61.470 63.158 14.22 4.64 43.31 3.61
6980 8036 4.309933 TGTCATACATTGATCGATCAGCC 58.690 43.478 25.95 6.22 38.19 4.85
6996 8058 1.139163 CTGCGCGCATACATGTCATA 58.861 50.000 36.48 6.72 0.00 2.15
6997 8059 1.501337 CCTGCGCGCATACATGTCAT 61.501 55.000 36.48 0.00 0.00 3.06
7000 8062 0.815213 AATCCTGCGCGCATACATGT 60.815 50.000 36.48 15.10 0.00 3.21
7001 8063 0.110509 GAATCCTGCGCGCATACATG 60.111 55.000 36.48 22.28 0.00 3.21
7002 8064 1.560004 CGAATCCTGCGCGCATACAT 61.560 55.000 36.48 22.68 0.00 2.29
7169 8252 1.078955 CATATGCAGGGGAGGGGAAT 58.921 55.000 0.00 0.00 0.00 3.01
7204 8287 2.104253 ACCGTACCGTACCGTACCG 61.104 63.158 15.84 12.74 36.10 4.02
7205 8288 1.022451 TCACCGTACCGTACCGTACC 61.022 60.000 15.84 2.78 36.10 3.34
7206 8289 1.003866 GATCACCGTACCGTACCGTAC 60.004 57.143 12.77 12.77 36.13 3.67
7207 8290 1.295792 GATCACCGTACCGTACCGTA 58.704 55.000 3.04 0.00 0.00 4.02
7208 8291 0.676466 TGATCACCGTACCGTACCGT 60.676 55.000 3.04 0.19 0.00 4.83
7286 8369 8.832521 TCACTTTCGTTAATCTATCTCTCTCTC 58.167 37.037 0.00 0.00 0.00 3.20
7288 8371 8.832521 TCTCACTTTCGTTAATCTATCTCTCTC 58.167 37.037 0.00 0.00 0.00 3.20
7319 8402 1.535437 CGCCGAGACCATGTAGTAACC 60.535 57.143 0.00 0.00 0.00 2.85
7365 8456 4.051922 CAAGGTGTAACTGACTGACTGAC 58.948 47.826 0.00 0.00 36.74 3.51
7366 8457 3.069586 CCAAGGTGTAACTGACTGACTGA 59.930 47.826 0.00 0.00 36.74 3.41
7367 8458 3.181465 ACCAAGGTGTAACTGACTGACTG 60.181 47.826 0.00 0.00 36.74 3.51
7368 8459 3.039011 ACCAAGGTGTAACTGACTGACT 58.961 45.455 0.00 0.00 36.74 3.41
7369 8460 3.470645 ACCAAGGTGTAACTGACTGAC 57.529 47.619 0.00 0.00 36.74 3.51
7370 8461 4.406326 TGTAACCAAGGTGTAACTGACTGA 59.594 41.667 0.00 0.00 36.74 3.41
7371 8462 4.699637 TGTAACCAAGGTGTAACTGACTG 58.300 43.478 0.00 0.00 36.74 3.51
7372 8463 4.407945 ACTGTAACCAAGGTGTAACTGACT 59.592 41.667 0.00 0.00 36.74 3.41
7373 8464 4.700700 ACTGTAACCAAGGTGTAACTGAC 58.299 43.478 0.00 0.00 36.74 3.51
7374 8465 4.202284 GGACTGTAACCAAGGTGTAACTGA 60.202 45.833 0.00 0.00 36.74 3.41
7375 8466 4.062991 GGACTGTAACCAAGGTGTAACTG 58.937 47.826 0.00 0.00 36.74 3.16
7376 8467 3.243975 CGGACTGTAACCAAGGTGTAACT 60.244 47.826 0.00 0.00 36.74 2.24
7377 8468 3.062042 CGGACTGTAACCAAGGTGTAAC 58.938 50.000 0.00 0.00 0.00 2.50
7378 8469 2.964464 TCGGACTGTAACCAAGGTGTAA 59.036 45.455 0.00 0.00 0.00 2.41
7379 8470 2.596346 TCGGACTGTAACCAAGGTGTA 58.404 47.619 0.00 0.00 0.00 2.90
7380 8471 1.416243 TCGGACTGTAACCAAGGTGT 58.584 50.000 0.00 0.00 0.00 4.16
7405 8496 5.050023 TGACGACGAATAAATTGCAAACTGA 60.050 36.000 1.71 0.00 0.00 3.41
7433 8524 3.255149 TCCTCGACACCAACTAGAAACTC 59.745 47.826 0.00 0.00 0.00 3.01
7495 8591 2.238521 GGAGTCAAAACAGGCATTGGA 58.761 47.619 0.00 0.00 0.00 3.53
7668 8771 0.601046 AGATGCACGGTGTCACACTG 60.601 55.000 15.69 15.69 45.33 3.66
7689 8793 2.271800 GTGTGAATGAGTGATCGACCC 58.728 52.381 0.00 0.00 0.00 4.46
7736 8840 8.258708 AGGTGTTTCTATACATAGTTTGAGGTC 58.741 37.037 0.00 0.00 0.00 3.85
7748 8852 9.903682 GCGAGTTTATATAGGTGTTTCTATACA 57.096 33.333 0.00 0.00 35.70 2.29
7752 8995 8.004087 ACAGCGAGTTTATATAGGTGTTTCTA 57.996 34.615 0.00 0.00 40.05 2.10
7754 8997 6.979238 AGACAGCGAGTTTATATAGGTGTTTC 59.021 38.462 5.55 0.00 42.52 2.78
7756 8999 6.273825 CAGACAGCGAGTTTATATAGGTGTT 58.726 40.000 5.55 0.00 42.52 3.32
7759 9002 4.262079 GCCAGACAGCGAGTTTATATAGGT 60.262 45.833 0.00 0.00 0.00 3.08
7760 9003 4.021894 AGCCAGACAGCGAGTTTATATAGG 60.022 45.833 0.00 0.00 38.01 2.57
7761 9004 5.127693 AGCCAGACAGCGAGTTTATATAG 57.872 43.478 0.00 0.00 38.01 1.31
7762 9005 6.835819 ATAGCCAGACAGCGAGTTTATATA 57.164 37.500 0.00 0.00 38.01 0.86
7781 9024 9.333724 GGTCTACATAGAGGAGTAAGATATAGC 57.666 40.741 0.00 0.00 32.01 2.97
7815 9058 2.076207 TGGAGGCTAGCGGTAATGTA 57.924 50.000 9.00 0.00 0.00 2.29
7842 9086 4.019771 TCCACATTGCACTCCACTGTTATA 60.020 41.667 0.00 0.00 35.41 0.98
7845 9089 1.133823 TCCACATTGCACTCCACTGTT 60.134 47.619 0.00 0.00 35.41 3.16
7847 9091 1.741706 GATCCACATTGCACTCCACTG 59.258 52.381 0.00 0.00 0.00 3.66
7850 9094 0.994247 AGGATCCACATTGCACTCCA 59.006 50.000 15.82 0.00 0.00 3.86
7863 9107 2.224161 CCCTGAAATGTCTCGAGGATCC 60.224 54.545 13.56 2.48 0.00 3.36
7873 9117 0.324645 ATGGCACCCCCTGAAATGTC 60.325 55.000 0.00 0.00 0.00 3.06
7875 9119 0.615544 ACATGGCACCCCCTGAAATG 60.616 55.000 0.00 0.00 31.84 2.32
7886 9130 6.699575 ATAATTTGAGGACTTACATGGCAC 57.300 37.500 0.00 0.00 0.00 5.01
7887 9131 8.815565 TTTATAATTTGAGGACTTACATGGCA 57.184 30.769 0.00 0.00 0.00 4.92
7942 9186 4.003648 CAGAAACTGGGCGAGTCTTAATT 58.996 43.478 1.62 0.00 31.73 1.40
7943 9187 3.600388 CAGAAACTGGGCGAGTCTTAAT 58.400 45.455 1.62 0.00 31.73 1.40
7944 9188 2.870435 GCAGAAACTGGGCGAGTCTTAA 60.870 50.000 1.62 0.00 31.73 1.85
7945 9189 1.337823 GCAGAAACTGGGCGAGTCTTA 60.338 52.381 1.62 0.00 31.73 2.10
7953 9197 1.305930 CGGTAAGGCAGAAACTGGGC 61.306 60.000 0.00 0.00 31.21 5.36
7957 9201 1.880027 CAAAGCGGTAAGGCAGAAACT 59.120 47.619 0.00 0.00 34.64 2.66
7979 9223 6.893005 AGTGAGAAGGTACTAAATGCTAGACT 59.107 38.462 0.00 0.00 38.49 3.24
7980 9224 7.102847 AGTGAGAAGGTACTAAATGCTAGAC 57.897 40.000 0.00 0.00 38.49 2.59
7982 9226 7.997482 TGTAGTGAGAAGGTACTAAATGCTAG 58.003 38.462 0.00 0.00 38.49 3.42
8081 9326 1.944709 AGCTTCGGTGTTAACAACCAC 59.055 47.619 17.85 5.06 0.00 4.16
8143 9392 2.079925 GATCCTTTCAGCCACAGACAC 58.920 52.381 0.00 0.00 0.00 3.67
8252 9501 6.588756 TGTTTATCTCACCGTAGCAAGTTTAG 59.411 38.462 0.00 0.00 0.00 1.85
8265 9514 7.494625 TCATCTTATCGGTTTGTTTATCTCACC 59.505 37.037 0.00 0.00 0.00 4.02
8298 9547 7.553760 ACTTGACATTGCATTCACTACATGATA 59.446 33.333 0.00 0.00 37.11 2.15
8300 9549 5.706833 ACTTGACATTGCATTCACTACATGA 59.293 36.000 0.00 0.00 34.65 3.07
8368 9617 3.812156 TCCTCGTCTCTAGAGTCTCTG 57.188 52.381 19.21 7.22 34.08 3.35
8390 9639 7.039784 CCTCAAAAGAAGTGAACATTGGGATAA 60.040 37.037 0.00 0.00 0.00 1.75
8409 9658 3.181458 ACGGTGACTAGCTTTCCTCAAAA 60.181 43.478 0.00 0.00 0.00 2.44
8412 9661 1.629043 ACGGTGACTAGCTTTCCTCA 58.371 50.000 0.00 0.00 0.00 3.86
8417 9666 2.550208 CCTTCCAACGGTGACTAGCTTT 60.550 50.000 0.00 0.00 0.00 3.51
8471 9721 5.585844 ACACATTCATTGCGATATCTCAACA 59.414 36.000 10.21 0.00 0.00 3.33
8472 9722 6.052840 ACACATTCATTGCGATATCTCAAC 57.947 37.500 10.21 0.00 0.00 3.18
8512 9764 4.046286 TGGAGGTTGCATCAAGGTTTAT 57.954 40.909 0.00 0.00 0.00 1.40
8526 9778 3.835395 TGTTTTGTGAAGGTTTGGAGGTT 59.165 39.130 0.00 0.00 0.00 3.50
8527 9779 3.436243 TGTTTTGTGAAGGTTTGGAGGT 58.564 40.909 0.00 0.00 0.00 3.85
8546 9798 5.541845 TCAAGTTGTGATCTTCTTCGATGT 58.458 37.500 2.11 0.00 0.00 3.06
8571 9823 0.752376 GTAGGAGTCCCCGGTGAGAG 60.752 65.000 5.25 0.00 40.87 3.20
8634 9886 5.243954 GCAAAAGTTGAATCCCCTAGTTTCT 59.756 40.000 0.00 0.00 0.00 2.52
8658 9911 5.521735 GTGCTCTATGTACACTTCCATCAAG 59.478 44.000 0.00 0.00 38.21 3.02
8691 9944 9.709495 CTTTCAATCAAATATTTTGGGAAGTGA 57.291 29.630 0.00 0.08 0.00 3.41
8748 10002 6.352051 CCCTTCTCTCTCTCTCATTCATTGTT 60.352 42.308 0.00 0.00 0.00 2.83
8750 10004 5.363292 TCCCTTCTCTCTCTCTCATTCATTG 59.637 44.000 0.00 0.00 0.00 2.82
8759 10013 3.697166 GACAACTCCCTTCTCTCTCTCT 58.303 50.000 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.