Multiple sequence alignment - TraesCS5B01G371900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G371900 chr5B 100.000 3762 0 0 1 3762 550238242 550234481 0.000000e+00 6948.0
1 TraesCS5B01G371900 chr5B 82.411 1319 196 22 1650 2956 550256650 550255356 0.000000e+00 1118.0
2 TraesCS5B01G371900 chr5B 87.006 177 17 6 320 494 469494032 469493860 1.070000e-45 195.0
3 TraesCS5B01G371900 chr5B 92.982 57 2 2 3484 3540 603151284 603151338 8.660000e-12 82.4
4 TraesCS5B01G371900 chr5A 91.160 2749 155 33 1003 3714 569651939 569649242 0.000000e+00 3650.0
5 TraesCS5B01G371900 chr5A 83.689 1220 181 14 1647 2853 569656005 569654791 0.000000e+00 1134.0
6 TraesCS5B01G371900 chr5A 89.744 156 15 1 346 501 43143491 43143337 8.240000e-47 198.0
7 TraesCS5B01G371900 chr5A 89.796 49 4 1 492 540 428037408 428037361 1.130000e-05 62.1
8 TraesCS5B01G371900 chr5D 93.191 1777 90 12 1003 2762 450218940 450217178 0.000000e+00 2582.0
9 TraesCS5B01G371900 chr5D 84.786 1216 170 13 1647 2853 450221977 450220768 0.000000e+00 1206.0
10 TraesCS5B01G371900 chr5D 88.070 570 40 13 3040 3587 450216614 450216051 0.000000e+00 651.0
11 TraesCS5B01G371900 chr5D 93.886 229 14 0 2759 2987 450216978 450216750 2.780000e-91 346.0
12 TraesCS5B01G371900 chr5D 90.345 145 14 0 348 492 400783398 400783542 1.380000e-44 191.0
13 TraesCS5B01G371900 chr5D 85.987 157 16 5 3608 3762 450215654 450215502 3.010000e-36 163.0
14 TraesCS5B01G371900 chr5D 82.353 170 25 4 493 661 505219345 505219180 3.920000e-30 143.0
15 TraesCS5B01G371900 chr5D 100.000 35 0 0 2986 3020 450216645 450216611 8.720000e-07 65.8
16 TraesCS5B01G371900 chr7B 92.715 302 22 0 1 302 693459258 693458957 1.600000e-118 436.0
17 TraesCS5B01G371900 chr7B 92.053 302 24 0 1 302 698988419 698988118 3.470000e-115 425.0
18 TraesCS5B01G371900 chr7B 91.694 301 25 0 1 301 698516730 698516430 5.810000e-113 418.0
19 TraesCS5B01G371900 chr7B 90.426 188 12 4 306 492 698516330 698516148 3.750000e-60 243.0
20 TraesCS5B01G371900 chr7B 90.476 189 9 5 306 492 698988016 698987835 1.350000e-59 241.0
21 TraesCS5B01G371900 chr7B 90.608 181 9 4 306 485 693458852 693458679 2.260000e-57 233.0
22 TraesCS5B01G371900 chr7B 96.970 33 1 0 745 777 140937230 140937262 5.250000e-04 56.5
23 TraesCS5B01G371900 chr6B 92.715 302 21 1 1 302 157236156 157236456 5.770000e-118 435.0
24 TraesCS5B01G371900 chr6B 90.698 301 27 1 3 302 594959040 594958740 2.110000e-107 399.0
25 TraesCS5B01G371900 chr6B 89.769 303 24 3 1 302 187844308 187844012 7.630000e-102 381.0
26 TraesCS5B01G371900 chr6B 92.821 195 12 2 303 496 157236550 157236743 7.960000e-72 281.0
27 TraesCS5B01G371900 chr6B 83.212 137 15 6 500 634 466786848 466786718 6.600000e-23 119.0
28 TraesCS5B01G371900 chr3B 95.167 269 13 0 33 301 722584030 722584298 3.470000e-115 425.0
29 TraesCS5B01G371900 chr3B 92.558 215 15 1 1 215 481648666 481648879 1.310000e-79 307.0
30 TraesCS5B01G371900 chr3B 90.789 152 12 1 344 493 722584720 722584871 6.370000e-48 202.0
31 TraesCS5B01G371900 chr3B 92.647 68 5 0 659 726 727789843 727789776 8.600000e-17 99.0
32 TraesCS5B01G371900 chr3B 84.043 94 14 1 202 295 481648837 481648929 5.180000e-14 89.8
33 TraesCS5B01G371900 chr3B 89.231 65 7 0 662 726 621147838 621147902 8.660000e-12 82.4
34 TraesCS5B01G371900 chr4A 90.397 302 29 0 1 302 661730897 661730596 7.570000e-107 398.0
35 TraesCS5B01G371900 chr4A 92.424 66 5 0 661 726 109763139 109763074 1.110000e-15 95.3
36 TraesCS5B01G371900 chr2B 87.222 180 14 4 309 488 25014979 25015149 2.960000e-46 196.0
37 TraesCS5B01G371900 chr6D 92.537 67 5 0 661 727 44244419 44244353 3.090000e-16 97.1
38 TraesCS5B01G371900 chr3D 92.188 64 4 1 664 726 134083945 134083882 5.180000e-14 89.8
39 TraesCS5B01G371900 chr2D 90.909 66 6 0 661 726 585678100 585678165 5.180000e-14 89.8
40 TraesCS5B01G371900 chr6A 90.769 65 6 0 662 726 582814444 582814380 1.860000e-13 87.9
41 TraesCS5B01G371900 chr2A 90.769 65 6 0 662 726 240475420 240475356 1.860000e-13 87.9
42 TraesCS5B01G371900 chr4D 86.667 75 7 3 3459 3530 464230057 464230131 3.110000e-11 80.5
43 TraesCS5B01G371900 chr3A 89.231 65 5 2 663 726 616283991 616284054 3.110000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G371900 chr5B 550234481 550238242 3761 True 6948.000000 6948 100.000000 1 3762 1 chr5B.!!$R2 3761
1 TraesCS5B01G371900 chr5B 550255356 550256650 1294 True 1118.000000 1118 82.411000 1650 2956 1 chr5B.!!$R3 1306
2 TraesCS5B01G371900 chr5A 569649242 569656005 6763 True 2392.000000 3650 87.424500 1003 3714 2 chr5A.!!$R3 2711
3 TraesCS5B01G371900 chr5D 450215502 450221977 6475 True 835.633333 2582 90.986667 1003 3762 6 chr5D.!!$R2 2759
4 TraesCS5B01G371900 chr7B 693458679 693459258 579 True 334.500000 436 91.661500 1 485 2 chr7B.!!$R1 484
5 TraesCS5B01G371900 chr7B 698987835 698988419 584 True 333.000000 425 91.264500 1 492 2 chr7B.!!$R3 491
6 TraesCS5B01G371900 chr7B 698516148 698516730 582 True 330.500000 418 91.060000 1 492 2 chr7B.!!$R2 491
7 TraesCS5B01G371900 chr6B 157236156 157236743 587 False 358.000000 435 92.768000 1 496 2 chr6B.!!$F1 495
8 TraesCS5B01G371900 chr3B 722584030 722584871 841 False 313.500000 425 92.978000 33 493 2 chr3B.!!$F3 460

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
998 1396 0.03101 AAGATCCTAACTCCGCCCCT 60.031 55.0 0.0 0.0 0.0 4.79 F
999 1397 0.03101 AGATCCTAACTCCGCCCCTT 60.031 55.0 0.0 0.0 0.0 3.95 F
1867 5344 0.30776 GAACAAGCAAGGTGGTGTCG 59.692 55.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1839 5316 0.040958 CTTGCTTGTTCCACGCACTC 60.041 55.0 0.0 0.0 38.3 3.51 R
2472 5949 0.115349 AGTCCACAGAGTAGCCACCT 59.885 55.0 0.0 0.0 0.0 4.00 R
3270 7070 0.251916 CCCCACTTACCGCAGATCAA 59.748 55.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.181428 TGGGGGTGTGATGTTTGACAATA 60.181 43.478 0.00 0.00 0.00 1.90
31 32 3.443681 GGTGTGATGTTTGACAATAGGGG 59.556 47.826 0.00 0.00 0.00 4.79
140 141 1.616628 GGAGGAGGAAGAGGGGCAA 60.617 63.158 0.00 0.00 0.00 4.52
147 148 1.584717 GGAAGAGGGGCAAAGGGGAT 61.585 60.000 0.00 0.00 0.00 3.85
304 409 0.251209 GAAGGAGGAAAAAGGGCGGT 60.251 55.000 0.00 0.00 0.00 5.68
332 453 2.740055 GACAGCTGGCCACGTGAG 60.740 66.667 19.30 7.84 0.00 3.51
333 454 4.320456 ACAGCTGGCCACGTGAGG 62.320 66.667 19.30 1.40 0.00 3.86
371 765 2.125106 GGTTTGGGCGCTCGATCT 60.125 61.111 7.64 0.00 0.00 2.75
375 769 2.803155 TTTGGGCGCTCGATCTGCTT 62.803 55.000 7.64 0.00 0.00 3.91
468 866 1.153647 CGATCGCACTAGTGGGCAA 60.154 57.895 29.72 17.38 42.44 4.52
495 893 0.108329 CCCACTAGACGCGTCCATTT 60.108 55.000 34.08 19.11 0.00 2.32
497 895 2.073816 CCACTAGACGCGTCCATTTTT 58.926 47.619 34.08 17.97 0.00 1.94
500 898 4.171005 CACTAGACGCGTCCATTTTTCTA 58.829 43.478 34.08 16.72 0.00 2.10
501 899 4.804139 CACTAGACGCGTCCATTTTTCTAT 59.196 41.667 34.08 15.00 0.00 1.98
502 900 5.975344 CACTAGACGCGTCCATTTTTCTATA 59.025 40.000 34.08 15.33 0.00 1.31
503 901 5.975939 ACTAGACGCGTCCATTTTTCTATAC 59.024 40.000 34.08 6.15 0.00 1.47
504 902 4.751060 AGACGCGTCCATTTTTCTATACA 58.249 39.130 34.08 0.00 0.00 2.29
506 904 3.305094 ACGCGTCCATTTTTCTATACACG 59.695 43.478 5.58 0.00 0.00 4.49
507 905 3.305094 CGCGTCCATTTTTCTATACACGT 59.695 43.478 0.00 0.00 0.00 4.49
509 907 5.253335 GCGTCCATTTTTCTATACACGTTC 58.747 41.667 0.00 0.00 0.00 3.95
510 908 5.163933 GCGTCCATTTTTCTATACACGTTCA 60.164 40.000 0.00 0.00 0.00 3.18
512 910 6.735063 CGTCCATTTTTCTATACACGTTCAAC 59.265 38.462 0.00 0.00 0.00 3.18
513 911 7.569774 CGTCCATTTTTCTATACACGTTCAACA 60.570 37.037 0.00 0.00 0.00 3.33
514 912 8.234546 GTCCATTTTTCTATACACGTTCAACAT 58.765 33.333 0.00 0.00 0.00 2.71
515 913 8.788806 TCCATTTTTCTATACACGTTCAACATT 58.211 29.630 0.00 0.00 0.00 2.71
517 915 9.393249 CATTTTTCTATACACGTTCAACATTGT 57.607 29.630 0.00 0.00 0.00 2.71
519 917 7.956420 TTTCTATACACGTTCAACATTGTCT 57.044 32.000 0.00 0.00 0.00 3.41
520 918 6.944557 TCTATACACGTTCAACATTGTCTG 57.055 37.500 0.00 0.00 0.00 3.51
522 920 7.149307 TCTATACACGTTCAACATTGTCTGAA 58.851 34.615 9.09 9.09 0.00 3.02
523 921 6.801539 ATACACGTTCAACATTGTCTGAAT 57.198 33.333 13.64 5.13 34.26 2.57
525 923 3.665409 CACGTTCAACATTGTCTGAATGC 59.335 43.478 21.14 10.23 40.65 3.56
526 924 3.565482 ACGTTCAACATTGTCTGAATGCT 59.435 39.130 21.14 12.80 40.65 3.79
527 925 4.036734 ACGTTCAACATTGTCTGAATGCTT 59.963 37.500 21.14 9.93 40.65 3.91
528 926 4.380678 CGTTCAACATTGTCTGAATGCTTG 59.619 41.667 14.93 0.00 34.26 4.01
530 928 6.437928 GTTCAACATTGTCTGAATGCTTGTA 58.562 36.000 13.64 0.00 34.26 2.41
531 929 6.000891 TCAACATTGTCTGAATGCTTGTAC 57.999 37.500 0.00 0.00 0.00 2.90
532 930 4.668576 ACATTGTCTGAATGCTTGTACG 57.331 40.909 0.00 0.00 0.00 3.67
533 931 4.314961 ACATTGTCTGAATGCTTGTACGA 58.685 39.130 0.00 0.00 0.00 3.43
535 933 3.378911 TGTCTGAATGCTTGTACGACA 57.621 42.857 0.00 0.00 0.00 4.35
536 934 3.925379 TGTCTGAATGCTTGTACGACAT 58.075 40.909 0.00 0.00 0.00 3.06
537 935 4.314961 TGTCTGAATGCTTGTACGACATT 58.685 39.130 7.34 7.34 36.74 2.71
538 936 4.754618 TGTCTGAATGCTTGTACGACATTT 59.245 37.500 8.62 0.00 34.28 2.32
539 937 5.238432 TGTCTGAATGCTTGTACGACATTTT 59.762 36.000 8.62 0.00 34.28 1.82
540 938 5.790495 GTCTGAATGCTTGTACGACATTTTC 59.210 40.000 8.62 1.10 34.28 2.29
541 939 5.041951 TGAATGCTTGTACGACATTTTCC 57.958 39.130 8.62 0.00 34.28 3.13
542 940 4.517075 TGAATGCTTGTACGACATTTTCCA 59.483 37.500 8.62 1.99 34.28 3.53
543 941 5.009110 TGAATGCTTGTACGACATTTTCCAA 59.991 36.000 8.62 0.00 34.28 3.53
546 944 6.561737 TGCTTGTACGACATTTTCCAAATA 57.438 33.333 0.00 0.00 0.00 1.40
547 945 6.375377 TGCTTGTACGACATTTTCCAAATAC 58.625 36.000 0.00 0.00 0.00 1.89
548 946 6.205853 TGCTTGTACGACATTTTCCAAATACT 59.794 34.615 0.00 0.00 0.00 2.12
551 949 9.458374 CTTGTACGACATTTTCCAAATACTTTT 57.542 29.630 0.00 0.00 0.00 2.27
553 951 9.453325 TGTACGACATTTTCCAAATACTTTTTC 57.547 29.630 0.00 0.00 0.00 2.29
554 952 9.453325 GTACGACATTTTCCAAATACTTTTTCA 57.547 29.630 0.00 0.00 0.00 2.69
555 953 8.934507 ACGACATTTTCCAAATACTTTTTCAA 57.065 26.923 0.00 0.00 0.00 2.69
556 954 9.372369 ACGACATTTTCCAAATACTTTTTCAAA 57.628 25.926 0.00 0.00 0.00 2.69
667 1065 6.458210 AGAGTGTTTTTGCAATATGAAAGGG 58.542 36.000 0.00 0.00 0.00 3.95
668 1066 6.267471 AGAGTGTTTTTGCAATATGAAAGGGA 59.733 34.615 0.00 0.00 0.00 4.20
669 1067 6.458210 AGTGTTTTTGCAATATGAAAGGGAG 58.542 36.000 0.00 0.00 0.00 4.30
670 1068 5.120674 GTGTTTTTGCAATATGAAAGGGAGC 59.879 40.000 0.00 0.00 0.00 4.70
671 1069 5.011943 TGTTTTTGCAATATGAAAGGGAGCT 59.988 36.000 0.00 0.00 0.00 4.09
672 1070 5.743636 TTTTGCAATATGAAAGGGAGCTT 57.256 34.783 0.00 0.00 0.00 3.74
673 1071 5.743636 TTTGCAATATGAAAGGGAGCTTT 57.256 34.783 0.00 0.00 0.00 3.51
674 1072 4.724074 TGCAATATGAAAGGGAGCTTTG 57.276 40.909 0.00 0.00 0.00 2.77
676 1074 3.739209 GCAATATGAAAGGGAGCTTTGCC 60.739 47.826 1.84 0.00 33.82 4.52
677 1075 1.750193 TATGAAAGGGAGCTTTGCCG 58.250 50.000 0.00 0.00 0.00 5.69
678 1076 0.251341 ATGAAAGGGAGCTTTGCCGT 60.251 50.000 0.00 0.00 0.00 5.68
679 1077 0.398696 TGAAAGGGAGCTTTGCCGTA 59.601 50.000 0.00 0.00 0.00 4.02
681 1079 0.400594 AAAGGGAGCTTTGCCGTAGT 59.599 50.000 0.00 0.00 0.00 2.73
682 1080 0.321653 AAGGGAGCTTTGCCGTAGTG 60.322 55.000 0.00 0.00 0.00 2.74
683 1081 1.745489 GGGAGCTTTGCCGTAGTGG 60.745 63.158 0.00 0.00 42.50 4.00
685 1083 0.248289 GGAGCTTTGCCGTAGTGGTA 59.752 55.000 0.00 0.00 41.21 3.25
686 1084 1.338389 GGAGCTTTGCCGTAGTGGTAA 60.338 52.381 0.00 0.00 40.98 2.85
691 1089 3.681593 TTTGCCGTAGTGGTAAAGCTA 57.318 42.857 0.00 0.00 45.94 3.32
692 1090 2.660189 TGCCGTAGTGGTAAAGCTAC 57.340 50.000 0.00 0.00 41.21 3.58
693 1091 2.173519 TGCCGTAGTGGTAAAGCTACT 58.826 47.619 0.00 0.00 41.90 2.57
694 1092 2.094390 TGCCGTAGTGGTAAAGCTACTG 60.094 50.000 0.00 0.00 39.36 2.74
695 1093 2.537401 CCGTAGTGGTAAAGCTACTGC 58.463 52.381 0.00 0.00 39.36 4.40
696 1094 2.537401 CGTAGTGGTAAAGCTACTGCC 58.463 52.381 0.00 0.00 39.36 4.85
698 1096 3.368116 CGTAGTGGTAAAGCTACTGCCTT 60.368 47.826 4.78 0.00 39.36 4.35
699 1097 3.059352 AGTGGTAAAGCTACTGCCTTG 57.941 47.619 4.78 0.00 37.53 3.61
700 1098 2.372172 AGTGGTAAAGCTACTGCCTTGT 59.628 45.455 4.78 0.00 37.53 3.16
701 1099 2.484264 GTGGTAAAGCTACTGCCTTGTG 59.516 50.000 4.78 0.00 40.80 3.33
702 1100 2.370519 TGGTAAAGCTACTGCCTTGTGA 59.629 45.455 4.78 0.00 40.80 3.58
703 1101 3.009033 TGGTAAAGCTACTGCCTTGTGAT 59.991 43.478 4.78 0.00 40.80 3.06
704 1102 3.623510 GGTAAAGCTACTGCCTTGTGATC 59.376 47.826 0.00 0.00 40.80 2.92
705 1103 3.423539 AAAGCTACTGCCTTGTGATCA 57.576 42.857 0.00 0.00 40.80 2.92
706 1104 3.641434 AAGCTACTGCCTTGTGATCAT 57.359 42.857 0.00 0.00 40.80 2.45
707 1105 2.915349 AGCTACTGCCTTGTGATCATG 58.085 47.619 0.00 0.00 40.80 3.07
708 1106 2.502947 AGCTACTGCCTTGTGATCATGA 59.497 45.455 0.00 0.00 40.80 3.07
709 1107 2.871022 GCTACTGCCTTGTGATCATGAG 59.129 50.000 0.00 0.00 0.00 2.90
710 1108 2.414994 ACTGCCTTGTGATCATGAGG 57.585 50.000 18.28 18.28 0.00 3.86
712 1110 2.286872 CTGCCTTGTGATCATGAGGTC 58.713 52.381 21.54 16.13 0.00 3.85
713 1111 1.629861 TGCCTTGTGATCATGAGGTCA 59.370 47.619 21.54 17.76 0.00 4.02
714 1112 2.012673 GCCTTGTGATCATGAGGTCAC 58.987 52.381 18.56 18.56 43.81 3.67
715 1113 2.274437 CCTTGTGATCATGAGGTCACG 58.726 52.381 19.55 9.84 45.88 4.35
717 1115 0.536724 TGTGATCATGAGGTCACGGG 59.463 55.000 19.55 0.00 45.88 5.28
718 1116 0.537188 GTGATCATGAGGTCACGGGT 59.463 55.000 12.45 0.00 35.85 5.28
719 1117 1.066143 GTGATCATGAGGTCACGGGTT 60.066 52.381 12.45 0.00 35.85 4.11
720 1118 1.207089 TGATCATGAGGTCACGGGTTC 59.793 52.381 0.09 0.00 0.00 3.62
721 1119 1.207089 GATCATGAGGTCACGGGTTCA 59.793 52.381 0.09 0.00 0.00 3.18
723 1121 1.001974 TCATGAGGTCACGGGTTCAAG 59.998 52.381 0.00 0.00 0.00 3.02
724 1122 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
725 1123 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
726 1124 0.391597 GAGGTCACGGGTTCAAGTCA 59.608 55.000 0.00 0.00 0.00 3.41
727 1125 0.834612 AGGTCACGGGTTCAAGTCAA 59.165 50.000 0.00 0.00 0.00 3.18
729 1127 1.474498 GGTCACGGGTTCAAGTCAAGT 60.474 52.381 0.00 0.00 0.00 3.16
730 1128 1.597663 GTCACGGGTTCAAGTCAAGTG 59.402 52.381 0.00 0.00 0.00 3.16
731 1129 0.944386 CACGGGTTCAAGTCAAGTGG 59.056 55.000 0.00 0.00 0.00 4.00
732 1130 0.544697 ACGGGTTCAAGTCAAGTGGT 59.455 50.000 0.00 0.00 0.00 4.16
733 1131 1.226746 CGGGTTCAAGTCAAGTGGTC 58.773 55.000 0.00 0.00 0.00 4.02
736 1134 1.202604 GGTTCAAGTCAAGTGGTCGGA 60.203 52.381 0.00 0.00 0.00 4.55
737 1135 1.865340 GTTCAAGTCAAGTGGTCGGAC 59.135 52.381 0.00 0.00 0.00 4.79
738 1136 0.391597 TCAAGTCAAGTGGTCGGACC 59.608 55.000 20.36 20.36 39.22 4.46
739 1137 0.602905 CAAGTCAAGTGGTCGGACCC 60.603 60.000 23.81 14.91 37.50 4.46
740 1138 0.763223 AAGTCAAGTGGTCGGACCCT 60.763 55.000 23.81 16.82 37.50 4.34
742 1140 0.108019 GTCAAGTGGTCGGACCCTTT 59.892 55.000 23.81 14.82 37.50 3.11
743 1141 0.395312 TCAAGTGGTCGGACCCTTTC 59.605 55.000 23.81 11.68 37.50 2.62
744 1142 0.396811 CAAGTGGTCGGACCCTTTCT 59.603 55.000 23.81 13.56 37.50 2.52
745 1143 0.685660 AAGTGGTCGGACCCTTTCTC 59.314 55.000 23.81 7.83 37.50 2.87
746 1144 1.080025 GTGGTCGGACCCTTTCTCG 60.080 63.158 23.81 0.00 37.50 4.04
747 1145 2.280552 TGGTCGGACCCTTTCTCGG 61.281 63.158 23.81 0.00 37.50 4.63
748 1146 1.980772 GGTCGGACCCTTTCTCGGA 60.981 63.158 16.55 0.00 30.04 4.55
749 1147 1.214853 GTCGGACCCTTTCTCGGAC 59.785 63.158 0.00 0.00 32.75 4.79
750 1148 1.980772 TCGGACCCTTTCTCGGACC 60.981 63.158 0.00 0.00 0.00 4.46
751 1149 2.987962 GGACCCTTTCTCGGACCC 59.012 66.667 0.00 0.00 0.00 4.46
752 1150 1.612739 GGACCCTTTCTCGGACCCT 60.613 63.158 0.00 0.00 0.00 4.34
753 1151 1.597461 GACCCTTTCTCGGACCCTG 59.403 63.158 0.00 0.00 0.00 4.45
756 1154 1.376037 CCTTTCTCGGACCCTGTGC 60.376 63.158 0.00 0.00 0.00 4.57
757 1155 1.371183 CTTTCTCGGACCCTGTGCA 59.629 57.895 0.00 0.00 0.00 4.57
758 1156 0.250295 CTTTCTCGGACCCTGTGCAA 60.250 55.000 0.00 0.00 0.00 4.08
759 1157 0.250295 TTTCTCGGACCCTGTGCAAG 60.250 55.000 0.00 0.00 0.00 4.01
760 1158 2.731691 TTCTCGGACCCTGTGCAAGC 62.732 60.000 0.00 0.00 0.00 4.01
762 1160 3.052082 CGGACCCTGTGCAAGCAG 61.052 66.667 0.00 0.00 36.31 4.24
778 1176 2.231215 GCAGGAGCTACATACACTGG 57.769 55.000 0.00 0.00 37.91 4.00
780 1178 1.123928 AGGAGCTACATACACTGGGC 58.876 55.000 0.00 0.00 0.00 5.36
781 1179 1.123928 GGAGCTACATACACTGGGCT 58.876 55.000 0.00 0.00 39.57 5.19
782 1180 1.202580 GGAGCTACATACACTGGGCTG 60.203 57.143 0.00 0.00 37.89 4.85
783 1181 0.179000 AGCTACATACACTGGGCTGC 59.821 55.000 0.00 0.00 36.92 5.25
786 1184 1.210478 CTACATACACTGGGCTGCCTT 59.790 52.381 19.68 0.00 0.00 4.35
787 1185 0.405585 ACATACACTGGGCTGCCTTT 59.594 50.000 19.68 0.00 0.00 3.11
789 1187 1.895131 CATACACTGGGCTGCCTTTTT 59.105 47.619 19.68 2.23 0.00 1.94
899 1297 4.391405 AAAACAGAAAAAGAGCCTGTGG 57.609 40.909 0.00 0.00 40.61 4.17
910 1308 4.803426 CCTGTGGCCTCGCGAGAC 62.803 72.222 36.59 26.34 35.39 3.36
911 1309 4.056125 CTGTGGCCTCGCGAGACA 62.056 66.667 36.59 28.77 35.39 3.41
912 1310 3.362399 CTGTGGCCTCGCGAGACAT 62.362 63.158 36.59 0.00 35.39 3.06
916 1314 2.336809 GCCTCGCGAGACATAGGG 59.663 66.667 36.59 20.20 35.39 3.53
918 1316 1.655329 CCTCGCGAGACATAGGGAC 59.345 63.158 36.59 0.00 35.39 4.46
919 1317 1.280142 CTCGCGAGACATAGGGACG 59.720 63.158 32.06 0.00 35.39 4.79
921 1319 2.027751 GCGAGACATAGGGACGCC 59.972 66.667 0.00 0.00 42.79 5.68
922 1320 2.728817 CGAGACATAGGGACGCCC 59.271 66.667 6.80 6.80 45.90 6.13
936 1334 4.736896 GCCCGTGTGGTCCGTCTC 62.737 72.222 0.00 0.00 36.04 3.36
937 1335 4.415332 CCCGTGTGGTCCGTCTCG 62.415 72.222 2.68 2.68 0.00 4.04
938 1336 3.667282 CCGTGTGGTCCGTCTCGT 61.667 66.667 7.29 0.00 0.00 4.18
939 1337 2.126965 CGTGTGGTCCGTCTCGTC 60.127 66.667 0.00 0.00 0.00 4.20
940 1338 2.614446 CGTGTGGTCCGTCTCGTCT 61.614 63.158 0.00 0.00 0.00 4.18
941 1339 1.209640 GTGTGGTCCGTCTCGTCTC 59.790 63.158 0.00 0.00 0.00 3.36
942 1340 1.072678 TGTGGTCCGTCTCGTCTCT 59.927 57.895 0.00 0.00 0.00 3.10
944 1342 1.376942 TGGTCCGTCTCGTCTCTCC 60.377 63.158 0.00 0.00 0.00 3.71
945 1343 2.114051 GGTCCGTCTCGTCTCTCCC 61.114 68.421 0.00 0.00 0.00 4.30
946 1344 2.114051 GTCCGTCTCGTCTCTCCCC 61.114 68.421 0.00 0.00 0.00 4.81
949 1347 1.507174 CGTCTCGTCTCTCCCCAAC 59.493 63.158 0.00 0.00 0.00 3.77
950 1348 1.891616 GTCTCGTCTCTCCCCAACC 59.108 63.158 0.00 0.00 0.00 3.77
951 1349 1.677966 TCTCGTCTCTCCCCAACCG 60.678 63.158 0.00 0.00 0.00 4.44
952 1350 1.677966 CTCGTCTCTCCCCAACCGA 60.678 63.158 0.00 0.00 0.00 4.69
953 1351 1.935327 CTCGTCTCTCCCCAACCGAC 61.935 65.000 0.00 0.00 0.00 4.79
954 1352 2.572284 GTCTCTCCCCAACCGACG 59.428 66.667 0.00 0.00 0.00 5.12
955 1353 2.678934 TCTCTCCCCAACCGACGG 60.679 66.667 13.61 13.61 0.00 4.79
956 1354 2.678934 CTCTCCCCAACCGACGGA 60.679 66.667 23.38 0.00 0.00 4.69
957 1355 2.678934 TCTCCCCAACCGACGGAG 60.679 66.667 23.38 12.46 43.92 4.63
958 1356 2.678934 CTCCCCAACCGACGGAGA 60.679 66.667 23.38 7.91 45.15 3.71
959 1357 2.993264 TCCCCAACCGACGGAGAC 60.993 66.667 23.38 0.00 0.00 3.36
973 1371 0.530288 GGAGACGAGCAGAGAAGCTT 59.470 55.000 0.00 0.00 46.75 3.74
974 1372 1.067213 GGAGACGAGCAGAGAAGCTTT 60.067 52.381 0.00 0.00 46.75 3.51
977 1375 0.315568 ACGAGCAGAGAAGCTTTCGT 59.684 50.000 14.19 14.19 46.75 3.85
978 1376 0.988439 CGAGCAGAGAAGCTTTCGTC 59.012 55.000 0.00 0.00 46.75 4.20
979 1377 1.667177 CGAGCAGAGAAGCTTTCGTCA 60.667 52.381 0.00 0.00 46.75 4.35
981 1379 2.411409 GAGCAGAGAAGCTTTCGTCAAG 59.589 50.000 0.00 0.00 46.75 3.02
983 1381 2.999355 GCAGAGAAGCTTTCGTCAAGAT 59.001 45.455 0.00 0.00 33.80 2.40
984 1382 3.061965 GCAGAGAAGCTTTCGTCAAGATC 59.938 47.826 0.00 0.00 33.80 2.75
985 1383 3.616379 CAGAGAAGCTTTCGTCAAGATCC 59.384 47.826 0.00 0.00 33.80 3.36
986 1384 3.513515 AGAGAAGCTTTCGTCAAGATCCT 59.486 43.478 0.00 0.00 33.80 3.24
987 1385 4.707448 AGAGAAGCTTTCGTCAAGATCCTA 59.293 41.667 0.00 0.00 33.80 2.94
988 1386 5.186021 AGAGAAGCTTTCGTCAAGATCCTAA 59.814 40.000 0.00 0.00 33.80 2.69
990 1388 4.810191 AGCTTTCGTCAAGATCCTAACT 57.190 40.909 1.85 0.00 33.80 2.24
993 1391 3.777465 TTCGTCAAGATCCTAACTCCG 57.223 47.619 0.00 0.00 0.00 4.63
995 1393 1.536284 CGTCAAGATCCTAACTCCGCC 60.536 57.143 0.00 0.00 0.00 6.13
996 1394 1.120530 TCAAGATCCTAACTCCGCCC 58.879 55.000 0.00 0.00 0.00 6.13
998 1396 0.031010 AAGATCCTAACTCCGCCCCT 60.031 55.000 0.00 0.00 0.00 4.79
999 1397 0.031010 AGATCCTAACTCCGCCCCTT 60.031 55.000 0.00 0.00 0.00 3.95
1000 1398 0.393448 GATCCTAACTCCGCCCCTTC 59.607 60.000 0.00 0.00 0.00 3.46
1001 1399 1.054978 ATCCTAACTCCGCCCCTTCC 61.055 60.000 0.00 0.00 0.00 3.46
1002 1400 2.743179 CCTAACTCCGCCCCTTCCC 61.743 68.421 0.00 0.00 0.00 3.97
1004 1402 3.262778 TAACTCCGCCCCTTCCCCT 62.263 63.158 0.00 0.00 0.00 4.79
1013 4465 2.044450 CCTTCCCCTCCCCATCCA 59.956 66.667 0.00 0.00 0.00 3.41
1085 4541 3.584052 CGAGTCCGGCTACCCTCG 61.584 72.222 0.00 4.76 40.54 4.63
1086 4542 2.124403 GAGTCCGGCTACCCTCGA 60.124 66.667 0.00 0.00 0.00 4.04
1087 4543 2.124236 AGTCCGGCTACCCTCGAG 60.124 66.667 5.13 5.13 0.00 4.04
1088 4544 3.217743 GTCCGGCTACCCTCGAGG 61.218 72.222 25.36 25.36 43.78 4.63
1267 4723 0.901580 CAGCAATTCAGGCCAGGGTT 60.902 55.000 5.01 0.00 0.00 4.11
1298 4754 2.738314 GTGCTTGACAATGGGAAATTGC 59.262 45.455 0.00 0.00 32.55 3.56
1363 4826 5.843421 AGTATTTGGAGCTGGTCTCATCTAT 59.157 40.000 6.83 1.77 43.70 1.98
1375 4844 6.194967 TGGTCTCATCTATAGTCAGTGGAAA 58.805 40.000 0.00 0.00 0.00 3.13
1382 4851 8.927411 TCATCTATAGTCAGTGGAAATGATTGA 58.073 33.333 0.00 0.00 45.47 2.57
1403 4875 9.196552 GATTGAAAAGGGAAATTGAAACTGTAG 57.803 33.333 0.00 0.00 0.00 2.74
1455 4931 5.220681 GGAACTTTTACTGCTATGCTACTGC 60.221 44.000 0.00 0.00 40.20 4.40
1485 4961 5.039333 GCCTGCTATCTGCTTTACATTTTG 58.961 41.667 0.00 0.00 43.37 2.44
1532 5008 3.895656 CTCTGTAATATTCCCCTCACCGA 59.104 47.826 0.00 0.00 0.00 4.69
1614 5090 3.845178 TCACTGCTTGTATGTAGGTTCG 58.155 45.455 0.00 0.00 0.00 3.95
1707 5184 0.532862 CGAACGGGCTATTCCATGCT 60.533 55.000 0.00 0.00 36.21 3.79
1746 5223 3.701542 TGTTTACCTTTGGTGTCATTGCA 59.298 39.130 0.00 0.00 36.19 4.08
1786 5263 2.809601 CGGACGGGCACTCTTTCG 60.810 66.667 0.00 0.00 0.00 3.46
1833 5310 1.064946 CATCGACGTCCTCCAGAGC 59.935 63.158 10.58 0.00 0.00 4.09
1839 5316 2.125753 GTCCTCCAGAGCGCTGTG 60.126 66.667 26.54 26.54 40.63 3.66
1867 5344 0.307760 GAACAAGCAAGGTGGTGTCG 59.692 55.000 0.00 0.00 0.00 4.35
1884 5361 3.675698 GTGTCGAGTTCTCCATCAACTTC 59.324 47.826 0.00 0.00 34.10 3.01
1968 5445 2.132762 GGCGAGTTTGAGAAGTTCGAA 58.867 47.619 0.00 0.00 0.00 3.71
2090 5567 1.132453 CTATGACTTCTCGCCGTGTCA 59.868 52.381 0.00 0.00 42.50 3.58
2220 5697 1.966451 CACCGACAAGAACAGCCCC 60.966 63.158 0.00 0.00 0.00 5.80
2337 5814 2.456119 GGAGCGTCGGCAGAATGTG 61.456 63.158 0.00 0.00 43.41 3.21
2386 5863 2.123597 TAGCAGCGTCCCCGGTAT 60.124 61.111 0.00 0.00 44.18 2.73
2571 6048 1.851021 CGTTTGGGCACATCGAAGCA 61.851 55.000 8.09 0.00 0.00 3.91
2662 6139 1.923316 CAGTGAGCTGTTTTGCGAAGC 60.923 52.381 0.00 0.00 46.04 3.86
2755 6438 9.337396 TGTCCTGGCAATACTATTAAATGTAAG 57.663 33.333 0.00 0.00 0.00 2.34
2757 6440 9.337396 TCCTGGCAATACTATTAAATGTAAGTG 57.663 33.333 0.00 0.00 0.00 3.16
2806 6489 9.471084 AAAAATGTAACTGTTGTAATGCTTACC 57.529 29.630 2.69 0.00 35.25 2.85
2829 6514 2.439409 CCCATGTGAACTGCTGAATGA 58.561 47.619 0.00 0.00 0.00 2.57
2857 6542 9.144747 GCATACTGTTGGACTCTAATATATGTG 57.855 37.037 0.00 0.00 0.00 3.21
3021 6815 9.661187 GTGACATATGATTAGCTTGATCTTTTG 57.339 33.333 10.38 3.48 0.00 2.44
3084 6879 6.199908 TGTTTCCAATATTTTTGCACTGTTCG 59.800 34.615 0.00 0.00 0.00 3.95
3102 6897 6.709397 ACTGTTCGATATACTTCCGACTATGA 59.291 38.462 0.00 0.00 31.60 2.15
3210 7010 8.832521 TCAAACAGTAAAGTCACGTATTTTCAT 58.167 29.630 0.00 0.00 0.00 2.57
3301 7101 0.329596 AAGTGGGGTTCTGCTCATCC 59.670 55.000 0.00 0.00 0.00 3.51
3302 7102 0.842030 AGTGGGGTTCTGCTCATCCA 60.842 55.000 0.00 0.00 0.00 3.41
3310 7110 2.174363 TCTGCTCATCCACAACAGTG 57.826 50.000 0.00 0.00 0.00 3.66
3339 7141 7.479352 TTGGTGGCAAATATAATCCATATGG 57.521 36.000 16.25 16.25 29.85 2.74
3340 7142 6.560361 TGGTGGCAAATATAATCCATATGGT 58.440 36.000 21.28 5.87 36.34 3.55
3342 7144 8.343028 TGGTGGCAAATATAATCCATATGGTAT 58.657 33.333 21.28 14.50 36.34 2.73
3343 7145 9.860650 GGTGGCAAATATAATCCATATGGTATA 57.139 33.333 21.28 16.07 36.34 1.47
3397 7214 2.015456 TCTCTTGCTCCTTGGTCTCA 57.985 50.000 0.00 0.00 0.00 3.27
3414 7231 5.880332 TGGTCTCAAGGCTTGTGATAAATAC 59.120 40.000 28.41 17.56 35.84 1.89
3574 7393 5.183228 ACGTTGGTTAAATCATGGACCTAG 58.817 41.667 0.00 0.00 33.33 3.02
3575 7394 5.046159 ACGTTGGTTAAATCATGGACCTAGA 60.046 40.000 0.00 0.00 33.33 2.43
3576 7395 5.523916 CGTTGGTTAAATCATGGACCTAGAG 59.476 44.000 0.00 0.00 33.33 2.43
3577 7396 6.629515 CGTTGGTTAAATCATGGACCTAGAGA 60.630 42.308 0.00 0.00 33.33 3.10
3579 7765 8.429641 GTTGGTTAAATCATGGACCTAGAGATA 58.570 37.037 0.00 0.00 33.33 1.98
3582 7768 4.792521 AATCATGGACCTAGAGATACGC 57.207 45.455 0.00 0.00 0.00 4.42
3587 7773 1.263752 GGACCTAGAGATACGCGTGAC 59.736 57.143 24.59 15.52 0.00 3.67
3592 7778 2.048444 AGAGATACGCGTGACCCTTA 57.952 50.000 24.59 0.00 0.00 2.69
3599 7785 1.292992 CGCGTGACCCTTATAAACCC 58.707 55.000 0.00 0.00 0.00 4.11
3604 7790 4.193865 CGTGACCCTTATAAACCCGAAAT 58.806 43.478 0.00 0.00 0.00 2.17
3606 7792 4.945543 GTGACCCTTATAAACCCGAAATGT 59.054 41.667 0.00 0.00 0.00 2.71
3680 7874 1.909700 AGACAAATCATTGCACGGGT 58.090 45.000 0.00 0.00 40.34 5.28
3688 7882 3.620427 TCATTGCACGGGTGTATACTT 57.380 42.857 4.17 0.00 0.00 2.24
3689 7883 4.739587 TCATTGCACGGGTGTATACTTA 57.260 40.909 4.17 0.00 0.00 2.24
3690 7884 4.689071 TCATTGCACGGGTGTATACTTAG 58.311 43.478 4.17 0.00 0.00 2.18
3691 7885 2.589798 TGCACGGGTGTATACTTAGC 57.410 50.000 4.17 1.13 0.00 3.09
3692 7886 1.826096 TGCACGGGTGTATACTTAGCA 59.174 47.619 4.17 3.60 0.00 3.49
3694 7888 3.264104 GCACGGGTGTATACTTAGCAAA 58.736 45.455 4.17 0.00 0.00 3.68
3695 7889 3.875134 GCACGGGTGTATACTTAGCAAAT 59.125 43.478 4.17 0.00 0.00 2.32
3696 7890 4.260620 GCACGGGTGTATACTTAGCAAATG 60.261 45.833 4.17 0.00 0.00 2.32
3715 7909 4.730949 ATGGCTTACGTGCTTACTTAGA 57.269 40.909 0.00 0.00 0.00 2.10
3742 7937 2.856222 CTTGCCTTTCACTCACTTCCT 58.144 47.619 0.00 0.00 0.00 3.36
3744 7939 1.490490 TGCCTTTCACTCACTTCCTGT 59.510 47.619 0.00 0.00 0.00 4.00
3749 7944 4.040461 CCTTTCACTCACTTCCTGTCCTTA 59.960 45.833 0.00 0.00 0.00 2.69
3756 7951 5.664908 ACTCACTTCCTGTCCTTATGATCAT 59.335 40.000 13.81 13.81 0.00 2.45
3759 7954 4.411540 ACTTCCTGTCCTTATGATCATGCT 59.588 41.667 18.72 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.081161 GGATCTGCCACATCCCCCT 61.081 63.158 0.00 0.00 34.68 4.79
31 32 0.179034 GGACTGGATCTGCCACATCC 60.179 60.000 0.00 0.00 43.33 3.51
47 48 0.035630 AGCTGGACATGCAGAAGGAC 60.036 55.000 4.37 0.00 0.00 3.85
57 58 0.326904 TCCATGGAGGAGCTGGACAT 60.327 55.000 11.44 0.00 43.07 3.06
140 141 3.269381 TGATCAGGCAAGTAAATCCCCTT 59.731 43.478 0.00 0.00 0.00 3.95
286 287 0.539669 CACCGCCCTTTTTCCTCCTT 60.540 55.000 0.00 0.00 0.00 3.36
340 467 1.247567 CAAACCCCAACAGAATCGCT 58.752 50.000 0.00 0.00 0.00 4.93
371 765 3.222855 CGGCCACCAAACCAAGCA 61.223 61.111 2.24 0.00 0.00 3.91
375 769 3.301554 CATGCGGCCACCAAACCA 61.302 61.111 2.24 0.00 0.00 3.67
495 893 7.654116 TCAGACAATGTTGAACGTGTATAGAAA 59.346 33.333 4.69 0.00 0.00 2.52
497 895 6.683715 TCAGACAATGTTGAACGTGTATAGA 58.316 36.000 4.69 1.95 0.00 1.98
500 898 6.602179 CATTCAGACAATGTTGAACGTGTAT 58.398 36.000 11.21 0.00 36.26 2.29
501 899 5.559991 GCATTCAGACAATGTTGAACGTGTA 60.560 40.000 11.21 0.00 36.26 2.90
502 900 4.789481 GCATTCAGACAATGTTGAACGTGT 60.789 41.667 11.21 4.39 36.26 4.49
503 901 3.665409 GCATTCAGACAATGTTGAACGTG 59.335 43.478 11.21 8.97 36.26 4.49
504 902 3.565482 AGCATTCAGACAATGTTGAACGT 59.435 39.130 11.21 0.00 36.26 3.99
506 904 5.284079 ACAAGCATTCAGACAATGTTGAAC 58.716 37.500 11.21 0.00 36.26 3.18
507 905 5.518848 ACAAGCATTCAGACAATGTTGAA 57.481 34.783 11.32 11.32 37.68 2.69
509 907 4.847757 CGTACAAGCATTCAGACAATGTTG 59.152 41.667 0.00 0.00 0.00 3.33
510 908 4.754618 TCGTACAAGCATTCAGACAATGTT 59.245 37.500 0.00 0.00 0.00 2.71
512 910 4.152223 TGTCGTACAAGCATTCAGACAATG 59.848 41.667 0.00 0.00 34.71 2.82
513 911 4.314961 TGTCGTACAAGCATTCAGACAAT 58.685 39.130 0.00 0.00 34.71 2.71
514 912 3.723260 TGTCGTACAAGCATTCAGACAA 58.277 40.909 0.00 0.00 34.71 3.18
515 913 3.378911 TGTCGTACAAGCATTCAGACA 57.621 42.857 0.00 0.00 35.18 3.41
517 915 5.106712 GGAAAATGTCGTACAAGCATTCAGA 60.107 40.000 6.90 0.00 32.38 3.27
519 917 4.517075 TGGAAAATGTCGTACAAGCATTCA 59.483 37.500 6.90 0.88 32.38 2.57
520 918 5.041951 TGGAAAATGTCGTACAAGCATTC 57.958 39.130 6.90 0.00 32.38 2.67
522 920 5.446143 TTTGGAAAATGTCGTACAAGCAT 57.554 34.783 0.00 0.00 0.00 3.79
523 921 4.902443 TTTGGAAAATGTCGTACAAGCA 57.098 36.364 0.00 0.00 0.00 3.91
525 923 9.458374 AAAAGTATTTGGAAAATGTCGTACAAG 57.542 29.630 0.00 0.00 39.02 3.16
526 924 9.804758 AAAAAGTATTTGGAAAATGTCGTACAA 57.195 25.926 0.00 0.00 39.02 2.41
527 925 9.453325 GAAAAAGTATTTGGAAAATGTCGTACA 57.547 29.630 0.00 0.00 39.02 2.90
528 926 9.453325 TGAAAAAGTATTTGGAAAATGTCGTAC 57.547 29.630 0.00 0.00 39.02 3.67
530 928 8.934507 TTGAAAAAGTATTTGGAAAATGTCGT 57.065 26.923 0.00 0.00 39.02 4.34
641 1039 8.253113 CCCTTTCATATTGCAAAAACACTCTAT 58.747 33.333 1.71 0.00 0.00 1.98
643 1041 6.267471 TCCCTTTCATATTGCAAAAACACTCT 59.733 34.615 1.71 0.00 0.00 3.24
644 1042 6.454795 TCCCTTTCATATTGCAAAAACACTC 58.545 36.000 1.71 0.00 0.00 3.51
645 1043 6.418057 TCCCTTTCATATTGCAAAAACACT 57.582 33.333 1.71 0.00 0.00 3.55
646 1044 5.120674 GCTCCCTTTCATATTGCAAAAACAC 59.879 40.000 1.71 0.00 0.00 3.32
647 1045 5.011943 AGCTCCCTTTCATATTGCAAAAACA 59.988 36.000 1.71 0.00 0.00 2.83
648 1046 5.482006 AGCTCCCTTTCATATTGCAAAAAC 58.518 37.500 1.71 0.00 0.00 2.43
652 1050 4.621274 GCAAAGCTCCCTTTCATATTGCAA 60.621 41.667 0.00 0.00 39.20 4.08
653 1051 3.119029 GCAAAGCTCCCTTTCATATTGCA 60.119 43.478 7.39 0.00 39.20 4.08
654 1052 3.451526 GCAAAGCTCCCTTTCATATTGC 58.548 45.455 0.00 0.00 39.20 3.56
655 1053 3.489738 CGGCAAAGCTCCCTTTCATATTG 60.490 47.826 0.00 0.00 39.20 1.90
657 1055 2.301346 CGGCAAAGCTCCCTTTCATAT 58.699 47.619 0.00 0.00 39.20 1.78
658 1056 1.004277 ACGGCAAAGCTCCCTTTCATA 59.996 47.619 0.00 0.00 39.20 2.15
659 1057 0.251341 ACGGCAAAGCTCCCTTTCAT 60.251 50.000 0.00 0.00 39.20 2.57
660 1058 0.398696 TACGGCAAAGCTCCCTTTCA 59.601 50.000 0.00 0.00 39.20 2.69
661 1059 1.087501 CTACGGCAAAGCTCCCTTTC 58.912 55.000 0.00 0.00 39.20 2.62
662 1060 0.400594 ACTACGGCAAAGCTCCCTTT 59.599 50.000 0.00 0.00 41.86 3.11
663 1061 0.321653 CACTACGGCAAAGCTCCCTT 60.322 55.000 0.00 0.00 0.00 3.95
664 1062 1.296715 CACTACGGCAAAGCTCCCT 59.703 57.895 0.00 0.00 0.00 4.20
665 1063 1.745489 CCACTACGGCAAAGCTCCC 60.745 63.158 0.00 0.00 0.00 4.30
667 1065 2.088950 TTACCACTACGGCAAAGCTC 57.911 50.000 0.00 0.00 39.03 4.09
668 1066 2.423577 CTTTACCACTACGGCAAAGCT 58.576 47.619 0.00 0.00 40.50 3.74
669 1067 2.894307 CTTTACCACTACGGCAAAGC 57.106 50.000 0.00 0.00 40.50 3.51
671 1069 2.554370 AGCTTTACCACTACGGCAAA 57.446 45.000 0.00 0.00 39.03 3.68
672 1070 2.564062 AGTAGCTTTACCACTACGGCAA 59.436 45.455 0.00 0.00 42.87 4.52
673 1071 2.094390 CAGTAGCTTTACCACTACGGCA 60.094 50.000 0.00 0.00 42.87 5.69
674 1072 2.537401 CAGTAGCTTTACCACTACGGC 58.463 52.381 0.00 0.00 42.87 5.68
676 1074 2.165845 AGGCAGTAGCTTTACCACTACG 59.834 50.000 0.00 0.00 42.87 3.51
677 1075 3.889520 AGGCAGTAGCTTTACCACTAC 57.110 47.619 0.00 0.00 41.70 2.73
678 1076 3.581332 ACAAGGCAGTAGCTTTACCACTA 59.419 43.478 0.00 0.00 38.07 2.74
679 1077 2.372172 ACAAGGCAGTAGCTTTACCACT 59.628 45.455 0.00 0.00 38.07 4.00
681 1079 2.370519 TCACAAGGCAGTAGCTTTACCA 59.629 45.455 0.00 0.00 38.07 3.25
682 1080 3.053831 TCACAAGGCAGTAGCTTTACC 57.946 47.619 0.00 0.00 38.07 2.85
683 1081 4.253685 TGATCACAAGGCAGTAGCTTTAC 58.746 43.478 0.00 0.00 38.07 2.01
685 1083 3.423539 TGATCACAAGGCAGTAGCTTT 57.576 42.857 0.00 0.00 41.17 3.51
686 1084 3.054875 TCATGATCACAAGGCAGTAGCTT 60.055 43.478 0.00 0.00 41.70 3.74
687 1085 2.502947 TCATGATCACAAGGCAGTAGCT 59.497 45.455 0.00 0.00 41.70 3.32
689 1087 3.118482 ACCTCATGATCACAAGGCAGTAG 60.118 47.826 20.25 2.15 29.70 2.57
691 1089 1.632409 ACCTCATGATCACAAGGCAGT 59.368 47.619 20.25 3.81 29.70 4.40
692 1090 2.286872 GACCTCATGATCACAAGGCAG 58.713 52.381 20.25 3.29 29.70 4.85
693 1091 1.629861 TGACCTCATGATCACAAGGCA 59.370 47.619 20.25 16.55 29.70 4.75
694 1092 2.012673 GTGACCTCATGATCACAAGGC 58.987 52.381 19.89 14.79 43.89 4.35
695 1093 2.274437 CGTGACCTCATGATCACAAGG 58.726 52.381 22.87 19.18 44.54 3.61
696 1094 2.274437 CCGTGACCTCATGATCACAAG 58.726 52.381 22.87 13.27 44.54 3.16
698 1096 0.536724 CCCGTGACCTCATGATCACA 59.463 55.000 22.87 9.97 44.54 3.58
699 1097 0.537188 ACCCGTGACCTCATGATCAC 59.463 55.000 16.33 16.33 41.54 3.06
700 1098 1.207089 GAACCCGTGACCTCATGATCA 59.793 52.381 0.00 0.00 34.90 2.92
701 1099 1.207089 TGAACCCGTGACCTCATGATC 59.793 52.381 0.00 0.00 34.90 2.92
702 1100 1.275666 TGAACCCGTGACCTCATGAT 58.724 50.000 0.00 0.00 34.90 2.45
703 1101 1.001974 CTTGAACCCGTGACCTCATGA 59.998 52.381 0.00 0.00 34.90 3.07
704 1102 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
705 1103 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
706 1104 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
707 1105 0.391597 TGACTTGAACCCGTGACCTC 59.608 55.000 0.00 0.00 0.00 3.85
708 1106 0.834612 TTGACTTGAACCCGTGACCT 59.165 50.000 0.00 0.00 0.00 3.85
709 1107 1.226746 CTTGACTTGAACCCGTGACC 58.773 55.000 0.00 0.00 0.00 4.02
710 1108 1.597663 CACTTGACTTGAACCCGTGAC 59.402 52.381 0.00 0.00 0.00 3.67
712 1110 0.944386 CCACTTGACTTGAACCCGTG 59.056 55.000 0.00 0.00 0.00 4.94
713 1111 0.544697 ACCACTTGACTTGAACCCGT 59.455 50.000 0.00 0.00 0.00 5.28
714 1112 1.226746 GACCACTTGACTTGAACCCG 58.773 55.000 0.00 0.00 0.00 5.28
715 1113 1.226746 CGACCACTTGACTTGAACCC 58.773 55.000 0.00 0.00 0.00 4.11
717 1115 1.865340 GTCCGACCACTTGACTTGAAC 59.135 52.381 0.00 0.00 0.00 3.18
718 1116 1.202604 GGTCCGACCACTTGACTTGAA 60.203 52.381 13.05 0.00 38.42 2.69
719 1117 0.391597 GGTCCGACCACTTGACTTGA 59.608 55.000 13.05 0.00 38.42 3.02
720 1118 0.602905 GGGTCCGACCACTTGACTTG 60.603 60.000 19.43 0.00 41.02 3.16
721 1119 0.763223 AGGGTCCGACCACTTGACTT 60.763 55.000 19.43 0.00 41.02 3.01
723 1121 0.108019 AAAGGGTCCGACCACTTGAC 59.892 55.000 19.43 0.60 41.02 3.18
724 1122 0.395312 GAAAGGGTCCGACCACTTGA 59.605 55.000 19.43 0.00 41.02 3.02
725 1123 0.396811 AGAAAGGGTCCGACCACTTG 59.603 55.000 19.43 0.00 41.02 3.16
726 1124 0.685660 GAGAAAGGGTCCGACCACTT 59.314 55.000 19.43 15.68 41.02 3.16
727 1125 1.533469 CGAGAAAGGGTCCGACCACT 61.533 60.000 19.43 10.80 41.02 4.00
729 1127 2.280552 CCGAGAAAGGGTCCGACCA 61.281 63.158 19.43 0.00 41.02 4.02
730 1128 1.980772 TCCGAGAAAGGGTCCGACC 60.981 63.158 9.30 9.30 37.60 4.79
731 1129 1.214853 GTCCGAGAAAGGGTCCGAC 59.785 63.158 0.00 0.00 0.00 4.79
732 1130 1.980772 GGTCCGAGAAAGGGTCCGA 60.981 63.158 0.00 0.00 0.00 4.55
733 1131 2.577593 GGTCCGAGAAAGGGTCCG 59.422 66.667 0.00 0.00 0.00 4.79
736 1134 1.152096 ACAGGGTCCGAGAAAGGGT 60.152 57.895 0.00 0.00 0.00 4.34
737 1135 1.296715 CACAGGGTCCGAGAAAGGG 59.703 63.158 0.00 0.00 0.00 3.95
738 1136 1.376037 GCACAGGGTCCGAGAAAGG 60.376 63.158 0.00 0.00 0.00 3.11
739 1137 0.250295 TTGCACAGGGTCCGAGAAAG 60.250 55.000 0.00 0.00 0.00 2.62
740 1138 0.250295 CTTGCACAGGGTCCGAGAAA 60.250 55.000 0.00 0.00 0.00 2.52
742 1140 3.059982 CTTGCACAGGGTCCGAGA 58.940 61.111 0.00 0.00 0.00 4.04
743 1141 2.743928 GCTTGCACAGGGTCCGAG 60.744 66.667 0.00 0.00 0.00 4.63
744 1142 3.535629 CTGCTTGCACAGGGTCCGA 62.536 63.158 0.00 0.00 33.85 4.55
745 1143 3.052082 CTGCTTGCACAGGGTCCG 61.052 66.667 0.00 0.00 33.85 4.79
759 1157 1.202580 CCCAGTGTATGTAGCTCCTGC 60.203 57.143 0.00 0.00 40.05 4.85
760 1158 1.202580 GCCCAGTGTATGTAGCTCCTG 60.203 57.143 0.00 0.00 0.00 3.86
762 1160 1.123928 AGCCCAGTGTATGTAGCTCC 58.876 55.000 0.00 0.00 32.66 4.70
764 1162 0.179000 GCAGCCCAGTGTATGTAGCT 59.821 55.000 0.00 0.00 37.15 3.32
765 1163 0.815615 GGCAGCCCAGTGTATGTAGC 60.816 60.000 0.00 0.00 0.00 3.58
767 1165 1.285280 AAGGCAGCCCAGTGTATGTA 58.715 50.000 8.22 0.00 0.00 2.29
768 1166 0.405585 AAAGGCAGCCCAGTGTATGT 59.594 50.000 8.22 0.00 0.00 2.29
769 1167 1.549203 AAAAGGCAGCCCAGTGTATG 58.451 50.000 8.22 0.00 0.00 2.39
770 1168 2.309136 AAAAAGGCAGCCCAGTGTAT 57.691 45.000 8.22 0.00 0.00 2.29
771 1169 3.839979 AAAAAGGCAGCCCAGTGTA 57.160 47.368 8.22 0.00 0.00 2.90
879 1277 2.101415 GCCACAGGCTCTTTTTCTGTTT 59.899 45.455 0.00 0.00 46.69 2.83
880 1278 1.683385 GCCACAGGCTCTTTTTCTGTT 59.317 47.619 0.00 0.00 46.69 3.16
881 1279 1.322442 GCCACAGGCTCTTTTTCTGT 58.678 50.000 0.00 0.00 46.69 3.41
893 1291 4.803426 GTCTCGCGAGGCCACAGG 62.803 72.222 33.98 8.90 0.00 4.00
894 1292 2.004808 TATGTCTCGCGAGGCCACAG 62.005 60.000 35.43 10.70 30.48 3.66
896 1294 1.299468 CTATGTCTCGCGAGGCCAC 60.299 63.158 35.43 25.65 30.48 5.01
897 1295 2.490148 CCTATGTCTCGCGAGGCCA 61.490 63.158 35.43 29.36 30.48 5.36
898 1296 2.336809 CCTATGTCTCGCGAGGCC 59.663 66.667 35.43 25.17 30.48 5.19
899 1297 2.194212 TCCCTATGTCTCGCGAGGC 61.194 63.158 32.84 32.84 0.00 4.70
901 1299 1.280142 CGTCCCTATGTCTCGCGAG 59.720 63.158 30.03 30.03 0.00 5.03
903 1301 2.353607 GCGTCCCTATGTCTCGCG 60.354 66.667 0.00 0.00 37.74 5.87
904 1302 2.027751 GGCGTCCCTATGTCTCGC 59.972 66.667 0.00 0.00 44.95 5.03
905 1303 2.728817 GGGCGTCCCTATGTCTCG 59.271 66.667 0.00 0.00 41.34 4.04
906 1304 2.125961 ACGGGCGTCCCTATGTCTC 61.126 63.158 0.00 0.00 42.67 3.36
907 1305 2.043248 ACGGGCGTCCCTATGTCT 60.043 61.111 0.00 0.00 42.67 3.41
908 1306 2.106332 CACGGGCGTCCCTATGTC 59.894 66.667 0.00 0.00 42.67 3.06
910 1308 2.202878 CACACGGGCGTCCCTATG 60.203 66.667 0.00 7.41 42.67 2.23
911 1309 3.467226 CCACACGGGCGTCCCTAT 61.467 66.667 0.00 0.00 42.67 2.57
919 1317 4.736896 GAGACGGACCACACGGGC 62.737 72.222 0.00 0.00 42.05 6.13
921 1319 3.606065 GACGAGACGGACCACACGG 62.606 68.421 9.40 0.00 38.77 4.94
922 1320 2.126965 GACGAGACGGACCACACG 60.127 66.667 0.00 0.00 37.36 4.49
923 1321 1.209640 GAGACGAGACGGACCACAC 59.790 63.158 0.00 0.00 0.00 3.82
924 1322 0.954449 GAGAGACGAGACGGACCACA 60.954 60.000 0.00 0.00 0.00 4.17
927 1325 2.114051 GGGAGAGACGAGACGGACC 61.114 68.421 0.00 0.00 0.00 4.46
928 1326 2.114051 GGGGAGAGACGAGACGGAC 61.114 68.421 0.00 0.00 0.00 4.79
929 1327 2.133359 TTGGGGAGAGACGAGACGGA 62.133 60.000 0.00 0.00 0.00 4.69
930 1328 1.677966 TTGGGGAGAGACGAGACGG 60.678 63.158 0.00 0.00 0.00 4.79
931 1329 1.507174 GTTGGGGAGAGACGAGACG 59.493 63.158 0.00 0.00 0.00 4.18
932 1330 1.891616 GGTTGGGGAGAGACGAGAC 59.108 63.158 0.00 0.00 0.00 3.36
933 1331 1.677966 CGGTTGGGGAGAGACGAGA 60.678 63.158 0.00 0.00 0.00 4.04
934 1332 1.677966 TCGGTTGGGGAGAGACGAG 60.678 63.158 0.00 0.00 0.00 4.18
935 1333 1.975407 GTCGGTTGGGGAGAGACGA 60.975 63.158 0.00 0.00 0.00 4.20
936 1334 2.572284 GTCGGTTGGGGAGAGACG 59.428 66.667 0.00 0.00 0.00 4.18
937 1335 2.572284 CGTCGGTTGGGGAGAGAC 59.428 66.667 0.00 0.00 0.00 3.36
938 1336 2.678934 CCGTCGGTTGGGGAGAGA 60.679 66.667 2.08 0.00 0.00 3.10
939 1337 2.678934 TCCGTCGGTTGGGGAGAG 60.679 66.667 11.88 0.00 0.00 3.20
941 1339 2.678934 TCTCCGTCGGTTGGGGAG 60.679 66.667 11.88 0.00 46.99 4.30
942 1340 2.993264 GTCTCCGTCGGTTGGGGA 60.993 66.667 11.88 0.82 32.12 4.81
944 1342 3.338126 CTCGTCTCCGTCGGTTGGG 62.338 68.421 11.88 0.04 35.01 4.12
945 1343 2.178521 CTCGTCTCCGTCGGTTGG 59.821 66.667 11.88 3.37 35.01 3.77
946 1344 2.504244 GCTCGTCTCCGTCGGTTG 60.504 66.667 11.88 5.95 35.01 3.77
949 1347 3.102107 CTCTGCTCGTCTCCGTCGG 62.102 68.421 4.39 4.39 35.01 4.79
950 1348 1.636570 TTCTCTGCTCGTCTCCGTCG 61.637 60.000 0.00 0.00 35.01 5.12
951 1349 0.098025 CTTCTCTGCTCGTCTCCGTC 59.902 60.000 0.00 0.00 35.01 4.79
952 1350 1.928706 GCTTCTCTGCTCGTCTCCGT 61.929 60.000 0.00 0.00 35.01 4.69
953 1351 1.226547 GCTTCTCTGCTCGTCTCCG 60.227 63.158 0.00 0.00 0.00 4.63
954 1352 0.530288 AAGCTTCTCTGCTCGTCTCC 59.470 55.000 0.00 0.00 43.24 3.71
955 1353 2.258755 GAAAGCTTCTCTGCTCGTCTC 58.741 52.381 0.00 0.00 43.24 3.36
956 1354 1.402194 CGAAAGCTTCTCTGCTCGTCT 60.402 52.381 0.00 0.00 43.24 4.18
957 1355 0.988439 CGAAAGCTTCTCTGCTCGTC 59.012 55.000 0.00 0.00 43.24 4.20
958 1356 0.315568 ACGAAAGCTTCTCTGCTCGT 59.684 50.000 14.19 14.19 43.24 4.18
959 1357 0.988439 GACGAAAGCTTCTCTGCTCG 59.012 55.000 13.02 13.02 43.24 5.03
960 1358 2.071688 TGACGAAAGCTTCTCTGCTC 57.928 50.000 0.00 0.00 43.24 4.26
961 1359 2.036475 TCTTGACGAAAGCTTCTCTGCT 59.964 45.455 0.00 0.00 46.40 4.24
962 1360 2.408050 TCTTGACGAAAGCTTCTCTGC 58.592 47.619 0.00 0.00 35.69 4.26
964 1362 3.513515 AGGATCTTGACGAAAGCTTCTCT 59.486 43.478 0.00 0.00 35.69 3.10
965 1363 3.855858 AGGATCTTGACGAAAGCTTCTC 58.144 45.455 0.00 0.00 35.69 2.87
966 1364 3.971245 AGGATCTTGACGAAAGCTTCT 57.029 42.857 0.00 0.00 35.69 2.85
968 1366 5.153950 AGTTAGGATCTTGACGAAAGCTT 57.846 39.130 0.00 0.00 35.69 3.74
969 1367 4.382147 GGAGTTAGGATCTTGACGAAAGCT 60.382 45.833 0.00 0.00 35.69 3.74
972 1370 3.675228 GCGGAGTTAGGATCTTGACGAAA 60.675 47.826 0.00 0.00 0.00 3.46
973 1371 2.159282 GCGGAGTTAGGATCTTGACGAA 60.159 50.000 0.00 0.00 0.00 3.85
974 1372 1.404391 GCGGAGTTAGGATCTTGACGA 59.596 52.381 0.00 0.00 0.00 4.20
977 1375 1.120530 GGGCGGAGTTAGGATCTTGA 58.879 55.000 0.00 0.00 0.00 3.02
978 1376 0.106894 GGGGCGGAGTTAGGATCTTG 59.893 60.000 0.00 0.00 0.00 3.02
979 1377 0.031010 AGGGGCGGAGTTAGGATCTT 60.031 55.000 0.00 0.00 0.00 2.40
981 1379 0.393448 GAAGGGGCGGAGTTAGGATC 59.607 60.000 0.00 0.00 0.00 3.36
983 1381 1.688187 GGAAGGGGCGGAGTTAGGA 60.688 63.158 0.00 0.00 0.00 2.94
984 1382 2.743179 GGGAAGGGGCGGAGTTAGG 61.743 68.421 0.00 0.00 0.00 2.69
985 1383 2.743179 GGGGAAGGGGCGGAGTTAG 61.743 68.421 0.00 0.00 0.00 2.34
986 1384 2.689771 GGGGAAGGGGCGGAGTTA 60.690 66.667 0.00 0.00 0.00 2.24
987 1385 4.677151 AGGGGAAGGGGCGGAGTT 62.677 66.667 0.00 0.00 0.00 3.01
995 1393 2.778717 GGATGGGGAGGGGAAGGG 60.779 72.222 0.00 0.00 0.00 3.95
996 1394 2.044450 TGGATGGGGAGGGGAAGG 59.956 66.667 0.00 0.00 0.00 3.46
998 1396 2.044450 CCTGGATGGGGAGGGGAA 59.956 66.667 0.00 0.00 0.00 3.97
999 1397 4.843331 GCCTGGATGGGGAGGGGA 62.843 72.222 0.00 0.00 36.00 4.81
1000 1398 4.851252 AGCCTGGATGGGGAGGGG 62.851 72.222 0.00 0.00 36.00 4.79
1001 1399 3.174265 GAGCCTGGATGGGGAGGG 61.174 72.222 0.00 0.00 36.00 4.30
1002 1400 3.174265 GGAGCCTGGATGGGGAGG 61.174 72.222 0.00 0.00 36.00 4.30
1004 1402 4.088351 TCGGAGCCTGGATGGGGA 62.088 66.667 0.00 0.00 36.00 4.81
1006 1404 2.765807 AGTCGGAGCCTGGATGGG 60.766 66.667 0.00 0.00 36.00 4.00
1043 4495 1.304134 GGTTTGGTTGCTCCCGGAT 60.304 57.895 0.73 0.00 34.77 4.18
1044 4496 2.114411 GGTTTGGTTGCTCCCGGA 59.886 61.111 0.73 0.00 34.77 5.14
1192 4648 2.183300 CGATTCGCACGGAAGGGA 59.817 61.111 0.00 0.00 38.24 4.20
1267 4723 1.295423 GTCAAGCACCGGGAGCTAA 59.705 57.895 21.83 11.87 42.53 3.09
1331 4794 4.702131 ACCAGCTCCAAATACTGAATGAAC 59.298 41.667 0.00 0.00 33.10 3.18
1363 4826 6.434028 CCCTTTTCAATCATTTCCACTGACTA 59.566 38.462 0.00 0.00 0.00 2.59
1375 4844 8.212995 ACAGTTTCAATTTCCCTTTTCAATCAT 58.787 29.630 0.00 0.00 0.00 2.45
1382 4851 7.898014 AGTCTACAGTTTCAATTTCCCTTTT 57.102 32.000 0.00 0.00 0.00 2.27
1428 4902 5.886960 AGCATAGCAGTAAAAGTTCCAAG 57.113 39.130 0.00 0.00 0.00 3.61
1430 4904 5.874810 CAGTAGCATAGCAGTAAAAGTTCCA 59.125 40.000 0.00 0.00 0.00 3.53
1433 4907 5.491982 AGCAGTAGCATAGCAGTAAAAGTT 58.508 37.500 0.00 0.00 45.49 2.66
1455 4931 2.383368 GCAGATAGCAGGCTGGATAG 57.617 55.000 17.64 0.00 44.79 2.08
1510 4986 3.895656 TCGGTGAGGGGAATATTACAGAG 59.104 47.826 0.00 0.00 0.00 3.35
1532 5008 7.341805 AGCAATATTTGTTCAGGACTCTGTAT 58.658 34.615 0.00 0.00 41.59 2.29
1601 5077 2.424601 CGAGGAACCGAACCTACATACA 59.575 50.000 0.00 0.00 37.93 2.29
1602 5078 2.797439 GCGAGGAACCGAACCTACATAC 60.797 54.545 0.00 0.00 37.93 2.39
1603 5079 1.406539 GCGAGGAACCGAACCTACATA 59.593 52.381 0.00 0.00 37.93 2.29
1604 5080 0.175073 GCGAGGAACCGAACCTACAT 59.825 55.000 0.00 0.00 37.93 2.29
1614 5090 0.868406 CTTGTTGTCTGCGAGGAACC 59.132 55.000 0.00 0.00 0.00 3.62
1695 5172 0.957362 GGGCAGAAGCATGGAATAGC 59.043 55.000 0.00 0.00 44.61 2.97
1699 5176 0.178967 TTGTGGGCAGAAGCATGGAA 60.179 50.000 0.00 0.00 44.61 3.53
1707 5184 3.185203 AGGGGCTTGTGGGCAGAA 61.185 61.111 0.00 0.00 42.84 3.02
1746 5223 0.963856 TGTCGGCGTACTGGACATCT 60.964 55.000 6.85 0.00 35.89 2.90
1778 5255 1.078143 GGGATGCCAGCGAAAGAGT 60.078 57.895 0.00 0.00 0.00 3.24
1839 5316 0.040958 CTTGCTTGTTCCACGCACTC 60.041 55.000 0.00 0.00 38.30 3.51
1867 5344 2.996621 CACCGAAGTTGATGGAGAACTC 59.003 50.000 0.00 0.00 32.33 3.01
1884 5361 2.576053 CCGTCGACGATGTCACCG 60.576 66.667 37.65 15.45 43.02 4.94
2038 5515 1.004745 AGAACCCGTTGGCATCTTCAT 59.995 47.619 0.00 0.00 29.24 2.57
2064 5541 2.223502 CGGCGAGAAGTCATAGTAAGCA 60.224 50.000 0.00 0.00 0.00 3.91
2067 5544 2.751259 ACACGGCGAGAAGTCATAGTAA 59.249 45.455 16.62 0.00 0.00 2.24
2090 5567 6.533730 TCCAGAACAACAAATCTGTACTCAT 58.466 36.000 0.00 0.00 41.16 2.90
2337 5814 2.919971 GAGGTGACTGCACAAGACC 58.080 57.895 0.00 0.00 46.96 3.85
2386 5863 5.051409 TCATCATAATTCCACATGAGGCA 57.949 39.130 3.98 0.00 34.79 4.75
2472 5949 0.115349 AGTCCACAGAGTAGCCACCT 59.885 55.000 0.00 0.00 0.00 4.00
2755 6438 7.047891 TCTTTATCCACCAGTATCAATGTCAC 58.952 38.462 0.00 0.00 0.00 3.67
2757 6440 8.506168 TTTCTTTATCCACCAGTATCAATGTC 57.494 34.615 0.00 0.00 0.00 3.06
2806 6489 0.325933 TCAGCAGTTCACATGGGGAG 59.674 55.000 0.00 0.00 0.00 4.30
2829 6514 9.935241 CATATATTAGAGTCCAACAGTATGCTT 57.065 33.333 0.00 0.00 42.53 3.91
2884 6569 6.525628 CAGTGTTGCATTTGCTAGATTTACAG 59.474 38.462 3.94 0.00 42.66 2.74
3168 6968 2.634982 TTGAAGATTCGCCATGTTGC 57.365 45.000 0.00 0.00 0.00 4.17
3172 6972 3.837213 ACTGTTTGAAGATTCGCCATG 57.163 42.857 0.00 0.00 0.00 3.66
3173 6973 5.473504 ACTTTACTGTTTGAAGATTCGCCAT 59.526 36.000 5.61 0.00 0.00 4.40
3223 7023 7.849804 ATGTCGGTAGCAAATATGATATTCC 57.150 36.000 0.00 0.00 28.78 3.01
3263 7063 3.767673 ACTTACCGCAGATCAAGGAGTAA 59.232 43.478 7.93 2.71 0.00 2.24
3270 7070 0.251916 CCCCACTTACCGCAGATCAA 59.748 55.000 0.00 0.00 0.00 2.57
3277 7077 2.038837 GCAGAACCCCACTTACCGC 61.039 63.158 0.00 0.00 0.00 5.68
3343 7145 9.830975 AAACAACCAAAATTAAGAGCTAATGTT 57.169 25.926 0.00 0.00 28.77 2.71
3379 7196 2.697654 CTTGAGACCAAGGAGCAAGAG 58.302 52.381 11.84 0.00 44.58 2.85
3397 7214 4.860022 AGGCAGTATTTATCACAAGCCTT 58.140 39.130 0.00 0.00 43.11 4.35
3565 7384 1.880675 CACGCGTATCTCTAGGTCCAT 59.119 52.381 13.44 0.00 0.00 3.41
3574 7393 4.494350 TTATAAGGGTCACGCGTATCTC 57.506 45.455 13.44 8.16 0.00 2.75
3575 7394 4.500375 GGTTTATAAGGGTCACGCGTATCT 60.500 45.833 13.44 4.05 0.00 1.98
3576 7395 3.737774 GGTTTATAAGGGTCACGCGTATC 59.262 47.826 13.44 7.97 0.00 2.24
3577 7396 3.493176 GGGTTTATAAGGGTCACGCGTAT 60.493 47.826 13.44 1.83 0.00 3.06
3579 7765 1.405933 GGGTTTATAAGGGTCACGCGT 60.406 52.381 5.58 5.58 0.00 6.01
3582 7768 2.965572 TCGGGTTTATAAGGGTCACG 57.034 50.000 0.00 0.00 0.00 4.35
3587 7773 4.274978 ACCACATTTCGGGTTTATAAGGG 58.725 43.478 0.00 0.00 32.12 3.95
3592 7778 6.549433 TCTACTACCACATTTCGGGTTTAT 57.451 37.500 0.00 0.00 38.60 1.40
3599 7785 4.119862 CCACCATCTACTACCACATTTCG 58.880 47.826 0.00 0.00 0.00 3.46
3604 7790 3.362706 GTCTCCACCATCTACTACCACA 58.637 50.000 0.00 0.00 0.00 4.17
3606 7792 3.028094 GGTCTCCACCATCTACTACCA 57.972 52.381 0.00 0.00 43.17 3.25
3639 7833 1.472480 GCACGTTGGCAACCATTATCT 59.528 47.619 23.68 0.00 31.53 1.98
3676 7870 3.250040 GCCATTTGCTAAGTATACACCCG 59.750 47.826 5.50 0.00 36.87 5.28
3690 7884 2.161609 AGTAAGCACGTAAGCCATTTGC 59.838 45.455 0.00 0.00 45.62 3.68
3691 7885 4.419522 AAGTAAGCACGTAAGCCATTTG 57.580 40.909 0.00 0.00 45.62 2.32
3692 7886 5.484715 TCTAAGTAAGCACGTAAGCCATTT 58.515 37.500 0.00 0.00 45.62 2.32
3694 7888 4.730949 TCTAAGTAAGCACGTAAGCCAT 57.269 40.909 0.00 0.00 45.62 4.40
3695 7889 4.524316 TTCTAAGTAAGCACGTAAGCCA 57.476 40.909 0.00 0.00 45.62 4.75
3696 7890 5.851047 TTTTCTAAGTAAGCACGTAAGCC 57.149 39.130 0.00 0.00 45.62 4.35
3715 7909 2.699846 TGAGTGAAAGGCAAGCCATTTT 59.300 40.909 14.40 5.94 38.92 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.