Multiple sequence alignment - TraesCS5B01G371400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G371400 chr5B 100.000 5020 0 0 715 5734 549976505 549971486 0.000000e+00 9271.0
1 TraesCS5B01G371400 chr5B 100.000 361 0 0 1 361 549977219 549976859 0.000000e+00 667.0
2 TraesCS5B01G371400 chr5B 95.238 84 4 0 3072 3155 549974062 549974145 3.600000e-27 134.0
3 TraesCS5B01G371400 chr5B 100.000 53 0 0 2819 2871 435952007 435951955 1.310000e-16 99.0
4 TraesCS5B01G371400 chr5A 95.062 2106 81 13 730 2827 569289607 569287517 0.000000e+00 3291.0
5 TraesCS5B01G371400 chr5A 92.182 2264 128 25 3505 5734 569286806 569284558 0.000000e+00 3155.0
6 TraesCS5B01G371400 chr5A 92.374 577 30 3 2936 3512 569287390 569286828 0.000000e+00 809.0
7 TraesCS5B01G371400 chr5A 86.792 159 18 3 41 196 458978923 458978765 2.120000e-39 174.0
8 TraesCS5B01G371400 chr5A 87.121 132 15 2 225 356 569290147 569290018 1.290000e-31 148.0
9 TraesCS5B01G371400 chr5A 85.135 148 17 3 2552 2695 648815475 648815329 4.630000e-31 147.0
10 TraesCS5B01G371400 chr5A 84.956 113 12 3 2826 2937 655457839 655457731 6.070000e-20 110.0
11 TraesCS5B01G371400 chr5A 84.746 118 7 8 2826 2934 404235383 404235268 2.180000e-19 108.0
12 TraesCS5B01G371400 chr5A 97.959 49 1 0 3123 3171 691668727 691668775 1.020000e-12 86.1
13 TraesCS5B01G371400 chr5D 96.324 1850 63 3 982 2827 449997248 449995400 0.000000e+00 3035.0
14 TraesCS5B01G371400 chr5D 90.860 1477 81 25 4282 5734 449993627 449992181 0.000000e+00 1930.0
15 TraesCS5B01G371400 chr5D 89.668 1084 59 20 2936 3985 449995271 449994207 0.000000e+00 1332.0
16 TraesCS5B01G371400 chr5D 91.667 264 17 3 3980 4239 449993887 449993625 1.520000e-95 361.0
17 TraesCS5B01G371400 chr5D 77.419 248 44 8 2456 2695 120933905 120934148 2.790000e-28 137.0
18 TraesCS5B01G371400 chr5D 94.048 84 3 1 264 347 449997948 449997867 6.030000e-25 126.0
19 TraesCS5B01G371400 chr5D 97.959 49 1 0 3064 3112 113384578 113384626 1.020000e-12 86.1
20 TraesCS5B01G371400 chr5D 88.525 61 5 2 3051 3110 426293920 426293861 7.970000e-09 73.1
21 TraesCS5B01G371400 chr2D 87.189 281 19 12 5319 5583 543053883 543054162 2.600000e-78 303.0
22 TraesCS5B01G371400 chr2D 96.429 56 2 0 2818 2873 302248005 302248060 6.120000e-15 93.5
23 TraesCS5B01G371400 chr6A 86.034 179 20 3 1 175 610910908 610911085 2.730000e-43 187.0
24 TraesCS5B01G371400 chr6A 93.443 61 3 1 2885 2944 414876262 414876322 7.910000e-14 89.8
25 TraesCS5B01G371400 chr6A 91.667 60 4 1 2885 2943 19837576 19837517 1.320000e-11 82.4
26 TraesCS5B01G371400 chr6A 97.826 46 1 0 3065 3110 25693316 25693271 4.760000e-11 80.5
27 TraesCS5B01G371400 chr4A 88.667 150 14 3 41 187 615099372 615099223 4.560000e-41 180.0
28 TraesCS5B01G371400 chr4A 86.792 159 16 4 41 194 11698719 11698561 7.640000e-39 172.0
29 TraesCS5B01G371400 chr4A 87.692 65 6 2 3084 3148 659181004 659180942 2.220000e-09 75.0
30 TraesCS5B01G371400 chr4A 87.879 66 4 3 3082 3146 659180942 659181004 2.220000e-09 75.0
31 TraesCS5B01G371400 chr2B 88.514 148 15 2 41 186 389457082 389457229 1.640000e-40 178.0
32 TraesCS5B01G371400 chr2B 86.667 105 10 3 3065 3165 273740478 273740374 4.700000e-21 113.0
33 TraesCS5B01G371400 chr7B 88.435 147 15 2 42 186 724809584 724809730 5.900000e-40 176.0
34 TraesCS5B01G371400 chr7B 96.364 55 1 1 3121 3174 123782910 123782856 7.910000e-14 89.8
35 TraesCS5B01G371400 chr7B 81.905 105 8 7 3065 3160 4895384 4895486 1.710000e-10 78.7
36 TraesCS5B01G371400 chr7A 88.000 150 16 2 41 188 727101426 727101277 5.900000e-40 176.0
37 TraesCS5B01G371400 chr7A 87.582 153 16 3 41 190 709594097 709594249 2.120000e-39 174.0
38 TraesCS5B01G371400 chr3D 88.514 148 14 3 42 187 79555244 79555098 5.900000e-40 176.0
39 TraesCS5B01G371400 chr3D 97.872 47 0 1 2893 2938 81695059 81695013 4.760000e-11 80.5
40 TraesCS5B01G371400 chr3D 97.826 46 1 0 3064 3109 251316011 251316056 4.760000e-11 80.5
41 TraesCS5B01G371400 chr4B 78.715 249 39 8 2456 2695 351010214 351010457 2.770000e-33 154.0
42 TraesCS5B01G371400 chr4B 86.275 102 8 6 2836 2935 111788053 111787956 7.860000e-19 106.0
43 TraesCS5B01G371400 chr4B 94.828 58 3 0 2816 2873 643804302 643804245 2.200000e-14 91.6
44 TraesCS5B01G371400 chr4B 88.710 62 6 1 3121 3181 31520519 31520458 2.220000e-09 75.0
45 TraesCS5B01G371400 chr3A 84.049 163 21 4 2537 2695 557107885 557107724 9.950000e-33 152.0
46 TraesCS5B01G371400 chr7D 77.470 253 41 11 2456 2698 77500735 77500489 2.790000e-28 137.0
47 TraesCS5B01G371400 chr7D 77.200 250 41 11 2456 2695 147584347 147584590 1.300000e-26 132.0
48 TraesCS5B01G371400 chr7D 87.611 113 7 5 2826 2937 101395306 101395200 2.170000e-24 124.0
49 TraesCS5B01G371400 chr7D 91.379 58 1 2 3121 3174 161481041 161480984 6.160000e-10 76.8
50 TraesCS5B01G371400 chr6D 88.182 110 6 5 2826 2934 50742370 50742267 2.170000e-24 124.0
51 TraesCS5B01G371400 chr6D 97.826 46 1 0 3121 3166 192109454 192109409 4.760000e-11 80.5
52 TraesCS5B01G371400 chr6D 93.478 46 3 0 3122 3167 3320642 3320597 1.030000e-07 69.4
53 TraesCS5B01G371400 chr6D 93.478 46 3 0 3122 3167 3326516 3326471 1.030000e-07 69.4
54 TraesCS5B01G371400 chr6D 93.478 46 3 0 3122 3167 3332393 3332348 1.030000e-07 69.4
55 TraesCS5B01G371400 chr6D 93.478 46 3 0 3122 3167 3338273 3338228 1.030000e-07 69.4
56 TraesCS5B01G371400 chr6D 93.478 46 3 0 3064 3109 192109409 192109454 1.030000e-07 69.4
57 TraesCS5B01G371400 chr6D 91.304 46 4 0 3064 3109 453721677 453721632 4.800000e-06 63.9
58 TraesCS5B01G371400 chr6D 94.118 34 2 0 2911 2944 8893201 8893168 1.000000e-02 52.8
59 TraesCS5B01G371400 chr1D 85.000 120 7 9 2826 2934 245982731 245982612 1.690000e-20 111.0
60 TraesCS5B01G371400 chr1D 84.821 112 9 6 3064 3167 105352412 105352523 7.860000e-19 106.0
61 TraesCS5B01G371400 chr1D 85.294 102 9 5 3065 3164 406674082 406674179 3.660000e-17 100.0
62 TraesCS5B01G371400 chr1D 87.356 87 8 3 3075 3160 406674171 406674087 4.730000e-16 97.1
63 TraesCS5B01G371400 chr1D 82.857 105 9 1 3064 3168 458142839 458142934 1.020000e-12 86.1
64 TraesCS5B01G371400 chr1D 81.818 110 9 4 3064 3171 458142932 458142832 1.320000e-11 82.4
65 TraesCS5B01G371400 chr1D 94.118 51 2 1 2885 2934 269811278 269811328 6.160000e-10 76.8
66 TraesCS5B01G371400 chr1D 100.000 40 0 0 3121 3160 377006959 377006920 2.220000e-09 75.0
67 TraesCS5B01G371400 chr1D 100.000 40 0 0 3122 3161 435345184 435345145 2.220000e-09 75.0
68 TraesCS5B01G371400 chr1D 87.692 65 4 3 2885 2948 109484561 109484622 7.970000e-09 73.1
69 TraesCS5B01G371400 chr1D 95.349 43 2 0 3067 3109 377006917 377006959 1.030000e-07 69.4
70 TraesCS5B01G371400 chr1D 91.667 48 4 0 3065 3112 465522002 465522049 3.710000e-07 67.6
71 TraesCS5B01G371400 chr1D 84.615 65 9 1 3065 3129 449587801 449587864 4.800000e-06 63.9
72 TraesCS5B01G371400 chr1B 82.524 103 14 3 3061 3160 433435949 433435848 2.850000e-13 87.9
73 TraesCS5B01G371400 chr1B 82.828 99 13 3 3065 3160 433435843 433435940 1.020000e-12 86.1
74 TraesCS5B01G371400 chr1B 93.103 58 2 2 3120 3175 678771371 678771314 3.680000e-12 84.2
75 TraesCS5B01G371400 chr1A 100.000 47 0 0 3121 3167 442476531 442476485 2.850000e-13 87.9
76 TraesCS5B01G371400 chr1A 97.778 45 1 0 3121 3165 481650058 481650102 1.710000e-10 78.7
77 TraesCS5B01G371400 chr1A 95.745 47 2 0 3121 3167 571880938 571880984 6.160000e-10 76.8
78 TraesCS5B01G371400 chr1A 92.453 53 3 1 2884 2935 119144551 119144499 2.220000e-09 75.0
79 TraesCS5B01G371400 chr1A 84.146 82 6 3 3079 3160 136959945 136960019 7.970000e-09 73.1
80 TraesCS5B01G371400 chr1A 80.734 109 7 6 3065 3159 542002668 542002560 7.970000e-09 73.1
81 TraesCS5B01G371400 chr1A 91.837 49 4 0 3061 3109 114551684 114551636 1.030000e-07 69.4
82 TraesCS5B01G371400 chr1A 85.135 74 4 4 3078 3151 136960011 136959945 1.030000e-07 69.4
83 TraesCS5B01G371400 chr1A 88.889 54 6 0 3056 3109 516370754 516370701 3.710000e-07 67.6
84 TraesCS5B01G371400 chr1A 100.000 35 0 0 3075 3109 481650092 481650058 1.330000e-06 65.8
85 TraesCS5B01G371400 chr6B 96.154 52 2 0 2885 2936 687848064 687848013 1.020000e-12 86.1
86 TraesCS5B01G371400 chr2A 87.342 79 5 4 3089 3165 352429243 352429318 1.020000e-12 86.1
87 TraesCS5B01G371400 chr2A 90.164 61 3 3 3050 3110 657517877 657517820 6.160000e-10 76.8
88 TraesCS5B01G371400 chr4D 96.078 51 2 0 3122 3172 84991343 84991293 3.680000e-12 84.2
89 TraesCS5B01G371400 chr4D 97.778 45 1 0 3121 3165 439780439 439780483 1.710000e-10 78.7
90 TraesCS5B01G371400 chr4D 94.000 50 2 1 2895 2943 494787236 494787187 2.220000e-09 75.0
91 TraesCS5B01G371400 chr4D 95.556 45 2 0 3065 3109 13372861 13372905 7.970000e-09 73.1
92 TraesCS5B01G371400 chr4D 95.556 45 2 0 3065 3109 456266856 456266812 7.970000e-09 73.1
93 TraesCS5B01G371400 chr4D 97.500 40 1 0 3121 3160 208558601 208558562 1.030000e-07 69.4
94 TraesCS5B01G371400 chr4D 90.385 52 5 0 3121 3172 494058029 494057978 1.030000e-07 69.4
95 TraesCS5B01G371400 chr4D 93.333 45 3 0 3065 3109 208558557 208558601 3.710000e-07 67.6
96 TraesCS5B01G371400 chr4D 97.368 38 1 0 3121 3158 13372905 13372868 1.330000e-06 65.8
97 TraesCS5B01G371400 chr4D 91.489 47 4 0 3121 3167 122203218 122203172 1.330000e-06 65.8
98 TraesCS5B01G371400 chr4D 91.304 46 4 0 3064 3109 122203173 122203218 4.800000e-06 63.9
99 TraesCS5B01G371400 chrUn 97.500 40 1 0 3121 3160 41062066 41062105 1.030000e-07 69.4
100 TraesCS5B01G371400 chrUn 97.500 40 1 0 3121 3160 130475585 130475624 1.030000e-07 69.4
101 TraesCS5B01G371400 chrUn 93.333 45 3 0 3065 3109 41062110 41062066 3.710000e-07 67.6
102 TraesCS5B01G371400 chrUn 93.333 45 3 0 3065 3109 130475629 130475585 3.710000e-07 67.6
103 TraesCS5B01G371400 chrUn 100.000 35 0 0 3074 3108 26664148 26664182 1.330000e-06 65.8
104 TraesCS5B01G371400 chrUn 95.000 40 2 0 3121 3160 258930 258891 4.800000e-06 63.9
105 TraesCS5B01G371400 chrUn 95.000 40 2 0 3121 3160 289836 289797 4.800000e-06 63.9
106 TraesCS5B01G371400 chrUn 95.000 40 2 0 3121 3160 15971468 15971429 4.800000e-06 63.9
107 TraesCS5B01G371400 chrUn 95.000 40 2 0 3122 3161 26664182 26664143 4.800000e-06 63.9
108 TraesCS5B01G371400 chrUn 91.304 46 4 0 3065 3110 29226336 29226291 4.800000e-06 63.9
109 TraesCS5B01G371400 chrUn 95.000 40 2 0 3121 3160 32053012 32052973 4.800000e-06 63.9
110 TraesCS5B01G371400 chrUn 93.023 43 3 0 3121 3163 34625779 34625737 4.800000e-06 63.9
111 TraesCS5B01G371400 chrUn 88.462 52 6 0 3058 3109 161317671 161317620 4.800000e-06 63.9
112 TraesCS5B01G371400 chrUn 95.000 40 2 0 3121 3160 161317620 161317659 4.800000e-06 63.9
113 TraesCS5B01G371400 chrUn 91.111 45 4 0 3065 3109 258886 258930 1.730000e-05 62.1
114 TraesCS5B01G371400 chrUn 91.111 45 4 0 3065 3109 289792 289836 1.730000e-05 62.1
115 TraesCS5B01G371400 chrUn 91.111 45 4 0 3065 3109 15971424 15971468 1.730000e-05 62.1
116 TraesCS5B01G371400 chrUn 85.714 63 4 4 3049 3109 32052953 32053012 1.730000e-05 62.1
117 TraesCS5B01G371400 chrUn 89.130 46 5 0 3064 3109 24221182 24221137 2.230000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G371400 chr5B 549971486 549977219 5733 True 4969.00 9271 100.00000 1 5734 2 chr5B.!!$R2 5733
1 TraesCS5B01G371400 chr5A 569284558 569290147 5589 True 1850.75 3291 91.68475 225 5734 4 chr5A.!!$R5 5509
2 TraesCS5B01G371400 chr5D 449992181 449997948 5767 True 1356.80 3035 92.51340 264 5734 5 chr5D.!!$R2 5470

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.030638 GCTCAGTCTCTCGGAGATGC 59.969 60.000 8.39 4.64 40.98 3.91 F
175 176 0.036952 AGCGCTTGCATCTGTACTGT 60.037 50.000 2.64 0.00 42.66 3.55 F
176 177 0.095935 GCGCTTGCATCTGTACTGTG 59.904 55.000 0.00 0.00 38.92 3.66 F
1443 1889 0.100682 TTCGCGAGGTAGTCATGCTC 59.899 55.000 9.59 0.00 0.00 4.26 F
1636 2082 0.616111 GGAGCTTGAGGAGAGGGTGA 60.616 60.000 0.00 0.00 0.00 4.02 F
1637 2083 0.823460 GAGCTTGAGGAGAGGGTGAG 59.177 60.000 0.00 0.00 0.00 3.51 F
3422 3896 1.593196 TTGACAGCAAGGCACTACAC 58.407 50.000 0.00 0.00 38.49 2.90 F
3970 4477 1.521010 CAGATGCAGCTGAGTCCCG 60.521 63.158 27.60 0.00 38.14 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1604 2050 0.036294 AAGCTCCGTAACCTTGCTCC 60.036 55.000 0.00 0.00 33.10 4.70 R
1614 2060 0.395862 CCCTCTCCTCAAGCTCCGTA 60.396 60.000 0.00 0.00 0.00 4.02 R
1637 2083 4.779733 TCTCCCGGGTCAGCTCCC 62.780 72.222 22.86 0.04 43.78 4.30 R
3343 3817 1.335324 GCCAGCATGTTCACTGTGTTC 60.335 52.381 7.79 3.20 31.76 3.18 R
3575 4077 2.798148 AAAACCCGCGCTACCCTCAG 62.798 60.000 5.56 0.00 0.00 3.35 R
3586 4088 8.565416 ACTATGCTAAATAAGAATAAAACCCGC 58.435 33.333 0.00 0.00 0.00 6.13 R
4508 5354 0.389426 TGTCGGCGAGCTTTAAGGAC 60.389 55.000 11.20 0.00 0.00 3.85 R
5350 6204 0.538584 TTCAGTGATCTGGCTGCGAT 59.461 50.000 0.00 0.00 41.59 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.699703 TTTCTGGTTTTATTTTAAGATTTCCGG 57.300 29.630 0.00 0.00 0.00 5.14
35 36 7.317390 TCTGGTTTTATTTTAAGATTTCCGGC 58.683 34.615 0.00 0.00 0.00 6.13
36 37 6.094061 TGGTTTTATTTTAAGATTTCCGGCG 58.906 36.000 0.00 0.00 0.00 6.46
37 38 5.005012 GGTTTTATTTTAAGATTTCCGGCGC 59.995 40.000 0.00 0.00 0.00 6.53
38 39 4.966965 TTATTTTAAGATTTCCGGCGCA 57.033 36.364 10.83 0.00 0.00 6.09
39 40 5.508200 TTATTTTAAGATTTCCGGCGCAT 57.492 34.783 10.83 0.00 0.00 4.73
40 41 3.414549 TTTTAAGATTTCCGGCGCATC 57.585 42.857 10.83 2.63 0.00 3.91
41 42 1.305201 TTAAGATTTCCGGCGCATCC 58.695 50.000 10.83 0.00 0.00 3.51
42 43 0.468226 TAAGATTTCCGGCGCATCCT 59.532 50.000 10.83 0.00 0.00 3.24
43 44 0.468226 AAGATTTCCGGCGCATCCTA 59.532 50.000 10.83 0.00 0.00 2.94
44 45 0.249911 AGATTTCCGGCGCATCCTAC 60.250 55.000 10.83 0.00 0.00 3.18
45 46 0.249911 GATTTCCGGCGCATCCTACT 60.250 55.000 10.83 0.00 0.00 2.57
46 47 0.532862 ATTTCCGGCGCATCCTACTG 60.533 55.000 10.83 0.00 0.00 2.74
47 48 1.895020 TTTCCGGCGCATCCTACTGT 61.895 55.000 10.83 0.00 0.00 3.55
48 49 2.572095 TTCCGGCGCATCCTACTGTG 62.572 60.000 10.83 0.00 0.00 3.66
49 50 2.494445 CGGCGCATCCTACTGTGA 59.506 61.111 10.83 0.00 0.00 3.58
50 51 1.878522 CGGCGCATCCTACTGTGAC 60.879 63.158 10.83 0.00 0.00 3.67
51 52 1.517832 GGCGCATCCTACTGTGACT 59.482 57.895 10.83 0.00 31.73 3.41
52 53 0.108138 GGCGCATCCTACTGTGACTT 60.108 55.000 10.83 0.00 31.73 3.01
53 54 1.002366 GCGCATCCTACTGTGACTTG 58.998 55.000 0.30 0.00 0.00 3.16
54 55 1.673033 GCGCATCCTACTGTGACTTGT 60.673 52.381 0.30 0.00 0.00 3.16
55 56 2.416836 GCGCATCCTACTGTGACTTGTA 60.417 50.000 0.30 0.00 0.00 2.41
56 57 3.845178 CGCATCCTACTGTGACTTGTAA 58.155 45.455 0.00 0.00 0.00 2.41
57 58 4.242475 CGCATCCTACTGTGACTTGTAAA 58.758 43.478 0.00 0.00 0.00 2.01
58 59 4.870426 CGCATCCTACTGTGACTTGTAAAT 59.130 41.667 0.00 0.00 0.00 1.40
59 60 5.005779 CGCATCCTACTGTGACTTGTAAATC 59.994 44.000 0.00 0.00 0.00 2.17
60 61 6.109359 GCATCCTACTGTGACTTGTAAATCT 58.891 40.000 0.00 0.00 0.00 2.40
61 62 6.595716 GCATCCTACTGTGACTTGTAAATCTT 59.404 38.462 0.00 0.00 0.00 2.40
62 63 7.764443 GCATCCTACTGTGACTTGTAAATCTTA 59.236 37.037 0.00 0.00 0.00 2.10
63 64 9.653287 CATCCTACTGTGACTTGTAAATCTTAA 57.347 33.333 0.00 0.00 0.00 1.85
64 65 9.877178 ATCCTACTGTGACTTGTAAATCTTAAG 57.123 33.333 0.00 0.00 0.00 1.85
65 66 9.085645 TCCTACTGTGACTTGTAAATCTTAAGA 57.914 33.333 7.82 7.82 0.00 2.10
66 67 9.877178 CCTACTGTGACTTGTAAATCTTAAGAT 57.123 33.333 12.37 12.37 36.07 2.40
69 70 9.950496 ACTGTGACTTGTAAATCTTAAGATGAT 57.050 29.630 18.61 12.88 34.49 2.45
75 76 8.993121 ACTTGTAAATCTTAAGATGATATGCCG 58.007 33.333 18.61 6.56 34.49 5.69
76 77 7.905604 TGTAAATCTTAAGATGATATGCCGG 57.094 36.000 18.61 0.00 34.49 6.13
77 78 5.886960 AAATCTTAAGATGATATGCCGGC 57.113 39.130 22.73 22.73 34.49 6.13
78 79 4.833478 ATCTTAAGATGATATGCCGGCT 57.167 40.909 29.70 15.76 32.68 5.52
79 80 4.193826 TCTTAAGATGATATGCCGGCTC 57.806 45.455 29.70 17.89 0.00 4.70
80 81 3.578282 TCTTAAGATGATATGCCGGCTCA 59.422 43.478 29.70 23.34 0.00 4.26
81 82 2.469274 AAGATGATATGCCGGCTCAG 57.531 50.000 29.70 0.00 0.00 3.35
82 83 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
83 84 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
84 85 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
85 86 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
86 87 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
87 88 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
88 89 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
89 90 4.200283 GCCGGCTCAGTCTCTCGG 62.200 72.222 22.15 0.00 43.13 4.63
90 91 2.438614 CCGGCTCAGTCTCTCGGA 60.439 66.667 0.00 0.00 42.94 4.55
91 92 2.477176 CCGGCTCAGTCTCTCGGAG 61.477 68.421 0.00 0.00 42.94 4.63
92 93 1.450491 CGGCTCAGTCTCTCGGAGA 60.450 63.158 7.60 7.60 40.01 3.71
93 94 0.817634 CGGCTCAGTCTCTCGGAGAT 60.818 60.000 8.39 0.00 40.98 2.75
94 95 0.667993 GGCTCAGTCTCTCGGAGATG 59.332 60.000 8.39 4.48 40.98 2.90
95 96 0.030638 GCTCAGTCTCTCGGAGATGC 59.969 60.000 8.39 4.64 40.98 3.91
96 97 1.679139 CTCAGTCTCTCGGAGATGCT 58.321 55.000 8.39 6.89 40.98 3.79
97 98 1.603802 CTCAGTCTCTCGGAGATGCTC 59.396 57.143 8.39 0.17 40.98 4.26
98 99 1.065126 TCAGTCTCTCGGAGATGCTCA 60.065 52.381 8.39 0.00 40.98 4.26
99 100 1.955778 CAGTCTCTCGGAGATGCTCAT 59.044 52.381 8.39 0.00 40.98 2.90
100 101 3.145286 CAGTCTCTCGGAGATGCTCATA 58.855 50.000 8.39 0.00 40.98 2.15
101 102 3.189080 CAGTCTCTCGGAGATGCTCATAG 59.811 52.174 8.39 0.00 40.98 2.23
102 103 2.487762 GTCTCTCGGAGATGCTCATAGG 59.512 54.545 8.39 0.00 40.98 2.57
103 104 1.818060 CTCTCGGAGATGCTCATAGGG 59.182 57.143 8.39 0.00 33.89 3.53
104 105 0.894141 CTCGGAGATGCTCATAGGGG 59.106 60.000 0.00 0.00 33.89 4.79
105 106 0.542938 TCGGAGATGCTCATAGGGGG 60.543 60.000 0.00 0.00 31.08 5.40
106 107 0.542938 CGGAGATGCTCATAGGGGGA 60.543 60.000 0.00 0.00 31.08 4.81
107 108 1.274712 GGAGATGCTCATAGGGGGAG 58.725 60.000 0.00 0.00 35.47 4.30
108 109 1.274712 GAGATGCTCATAGGGGGAGG 58.725 60.000 0.00 0.00 32.96 4.30
109 110 0.178879 AGATGCTCATAGGGGGAGGG 60.179 60.000 0.00 0.00 32.96 4.30
110 111 0.474660 GATGCTCATAGGGGGAGGGT 60.475 60.000 0.00 0.00 32.96 4.34
111 112 0.769776 ATGCTCATAGGGGGAGGGTG 60.770 60.000 0.00 0.00 32.96 4.61
112 113 1.384643 GCTCATAGGGGGAGGGTGT 60.385 63.158 0.00 0.00 32.96 4.16
113 114 1.700042 GCTCATAGGGGGAGGGTGTG 61.700 65.000 0.00 0.00 32.96 3.82
114 115 1.692749 TCATAGGGGGAGGGTGTGC 60.693 63.158 0.00 0.00 0.00 4.57
115 116 2.768344 ATAGGGGGAGGGTGTGCG 60.768 66.667 0.00 0.00 0.00 5.34
116 117 3.635869 ATAGGGGGAGGGTGTGCGT 62.636 63.158 0.00 0.00 0.00 5.24
119 120 3.315949 GGGGAGGGTGTGCGTGTA 61.316 66.667 0.00 0.00 0.00 2.90
120 121 2.666098 GGGGAGGGTGTGCGTGTAT 61.666 63.158 0.00 0.00 0.00 2.29
121 122 1.449601 GGGAGGGTGTGCGTGTATG 60.450 63.158 0.00 0.00 0.00 2.39
122 123 2.106683 GGAGGGTGTGCGTGTATGC 61.107 63.158 0.00 0.00 0.00 3.14
123 124 2.046314 AGGGTGTGCGTGTATGCC 60.046 61.111 0.00 0.00 0.00 4.40
124 125 2.046314 GGGTGTGCGTGTATGCCT 60.046 61.111 0.00 0.00 0.00 4.75
125 126 1.674322 GGGTGTGCGTGTATGCCTT 60.674 57.895 0.00 0.00 0.00 4.35
126 127 1.241315 GGGTGTGCGTGTATGCCTTT 61.241 55.000 0.00 0.00 0.00 3.11
127 128 1.444836 GGTGTGCGTGTATGCCTTTA 58.555 50.000 0.00 0.00 0.00 1.85
128 129 2.014128 GGTGTGCGTGTATGCCTTTAT 58.986 47.619 0.00 0.00 0.00 1.40
129 130 3.199677 GGTGTGCGTGTATGCCTTTATA 58.800 45.455 0.00 0.00 0.00 0.98
130 131 3.623960 GGTGTGCGTGTATGCCTTTATAA 59.376 43.478 0.00 0.00 0.00 0.98
131 132 4.260620 GGTGTGCGTGTATGCCTTTATAAG 60.261 45.833 0.00 0.00 0.00 1.73
147 148 5.778161 TTATAAGGATGAATGTATGCGCG 57.222 39.130 0.00 0.00 0.00 6.86
148 149 1.953559 AAGGATGAATGTATGCGCGT 58.046 45.000 8.43 7.55 0.00 6.01
149 150 2.812358 AGGATGAATGTATGCGCGTA 57.188 45.000 8.43 4.92 0.00 4.42
150 151 3.319137 AGGATGAATGTATGCGCGTAT 57.681 42.857 15.52 15.52 0.00 3.06
151 152 2.995939 AGGATGAATGTATGCGCGTATG 59.004 45.455 20.45 0.00 0.00 2.39
152 153 2.736721 GGATGAATGTATGCGCGTATGT 59.263 45.455 20.45 2.87 0.00 2.29
153 154 3.924073 GGATGAATGTATGCGCGTATGTA 59.076 43.478 20.45 8.73 0.00 2.29
154 155 4.201589 GGATGAATGTATGCGCGTATGTAC 60.202 45.833 20.45 11.39 0.00 2.90
165 166 2.660944 GTATGTACGAGCGCTTGCA 58.339 52.632 24.80 15.48 42.66 4.08
166 167 1.209128 GTATGTACGAGCGCTTGCAT 58.791 50.000 24.80 20.92 42.66 3.96
167 168 1.190323 GTATGTACGAGCGCTTGCATC 59.810 52.381 24.80 14.72 42.66 3.91
168 169 0.179100 ATGTACGAGCGCTTGCATCT 60.179 50.000 24.80 7.66 42.66 2.90
169 170 1.078201 TGTACGAGCGCTTGCATCTG 61.078 55.000 24.80 5.09 42.66 2.90
170 171 1.078759 GTACGAGCGCTTGCATCTGT 61.079 55.000 24.80 6.50 42.66 3.41
171 172 0.454196 TACGAGCGCTTGCATCTGTA 59.546 50.000 24.80 5.44 42.66 2.74
172 173 1.078759 ACGAGCGCTTGCATCTGTAC 61.079 55.000 24.80 0.00 42.66 2.90
173 174 0.803768 CGAGCGCTTGCATCTGTACT 60.804 55.000 13.26 0.00 42.66 2.73
174 175 0.649475 GAGCGCTTGCATCTGTACTG 59.351 55.000 13.26 0.00 42.66 2.74
175 176 0.036952 AGCGCTTGCATCTGTACTGT 60.037 50.000 2.64 0.00 42.66 3.55
176 177 0.095935 GCGCTTGCATCTGTACTGTG 59.904 55.000 0.00 0.00 38.92 3.66
177 178 1.432514 CGCTTGCATCTGTACTGTGT 58.567 50.000 0.00 0.00 0.00 3.72
178 179 1.800586 CGCTTGCATCTGTACTGTGTT 59.199 47.619 0.00 0.00 0.00 3.32
179 180 2.993220 CGCTTGCATCTGTACTGTGTTA 59.007 45.455 0.00 0.00 0.00 2.41
180 181 3.431912 CGCTTGCATCTGTACTGTGTTAA 59.568 43.478 0.00 0.00 0.00 2.01
181 182 4.084066 CGCTTGCATCTGTACTGTGTTAAA 60.084 41.667 0.00 0.00 0.00 1.52
182 183 5.385617 GCTTGCATCTGTACTGTGTTAAAG 58.614 41.667 0.00 0.00 0.00 1.85
183 184 5.179368 GCTTGCATCTGTACTGTGTTAAAGA 59.821 40.000 0.00 0.00 0.00 2.52
184 185 6.293407 GCTTGCATCTGTACTGTGTTAAAGAA 60.293 38.462 0.00 0.00 0.00 2.52
185 186 7.561021 TTGCATCTGTACTGTGTTAAAGAAA 57.439 32.000 0.00 0.00 0.00 2.52
186 187 7.744087 TGCATCTGTACTGTGTTAAAGAAAT 57.256 32.000 0.00 0.00 0.00 2.17
187 188 8.840833 TGCATCTGTACTGTGTTAAAGAAATA 57.159 30.769 0.00 0.00 0.00 1.40
188 189 9.448438 TGCATCTGTACTGTGTTAAAGAAATAT 57.552 29.630 0.00 0.00 0.00 1.28
215 216 9.965824 TTTTCTAGAAATCAAAATCAAGTGACC 57.034 29.630 18.37 0.00 0.00 4.02
216 217 7.687941 TCTAGAAATCAAAATCAAGTGACCC 57.312 36.000 0.00 0.00 0.00 4.46
217 218 7.230747 TCTAGAAATCAAAATCAAGTGACCCA 58.769 34.615 0.00 0.00 0.00 4.51
218 219 6.923199 AGAAATCAAAATCAAGTGACCCAT 57.077 33.333 0.00 0.00 0.00 4.00
219 220 6.928520 AGAAATCAAAATCAAGTGACCCATC 58.071 36.000 0.00 0.00 0.00 3.51
220 221 6.723052 AGAAATCAAAATCAAGTGACCCATCT 59.277 34.615 0.00 0.00 0.00 2.90
221 222 6.923199 AATCAAAATCAAGTGACCCATCTT 57.077 33.333 0.00 0.00 0.00 2.40
222 223 8.421249 AAATCAAAATCAAGTGACCCATCTTA 57.579 30.769 0.00 0.00 0.00 2.10
223 224 8.599624 AATCAAAATCAAGTGACCCATCTTAT 57.400 30.769 0.00 0.00 0.00 1.73
224 225 7.395190 TCAAAATCAAGTGACCCATCTTATG 57.605 36.000 0.00 0.00 0.00 1.90
225 226 7.174413 TCAAAATCAAGTGACCCATCTTATGA 58.826 34.615 0.00 0.00 0.00 2.15
226 227 7.669304 TCAAAATCAAGTGACCCATCTTATGAA 59.331 33.333 0.00 0.00 0.00 2.57
227 228 8.306038 CAAAATCAAGTGACCCATCTTATGAAA 58.694 33.333 0.00 0.00 0.00 2.69
228 229 8.421249 AAATCAAGTGACCCATCTTATGAAAA 57.579 30.769 0.00 0.00 0.00 2.29
229 230 8.421249 AATCAAGTGACCCATCTTATGAAAAA 57.579 30.769 0.00 0.00 0.00 1.94
278 279 0.252284 ACCCGTCCAGACTCCAGAAT 60.252 55.000 0.00 0.00 0.00 2.40
738 776 0.704076 CCTCCTCAATCAAACCCCCA 59.296 55.000 0.00 0.00 0.00 4.96
744 782 4.733542 ATCAAACCCCCACCCGCG 62.734 66.667 0.00 0.00 0.00 6.46
1377 1823 3.005539 ATGGACGCACAGAGGCCT 61.006 61.111 3.86 3.86 0.00 5.19
1437 1883 0.382515 ATGAGCTTCGCGAGGTAGTC 59.617 55.000 19.98 13.90 35.91 2.59
1443 1889 0.100682 TTCGCGAGGTAGTCATGCTC 59.899 55.000 9.59 0.00 0.00 4.26
1450 1896 0.818296 GGTAGTCATGCTCGTGGACT 59.182 55.000 0.00 0.00 43.76 3.85
1452 1898 1.472878 GTAGTCATGCTCGTGGACTCA 59.527 52.381 0.00 0.00 41.74 3.41
1488 1934 2.178521 CCCGACTCGGTCTTCGTG 59.821 66.667 16.35 0.00 46.80 4.35
1604 2050 2.070039 TGTGGCGGGATAAGGGGAG 61.070 63.158 0.00 0.00 0.00 4.30
1614 2060 1.847088 GATAAGGGGAGGAGCAAGGTT 59.153 52.381 0.00 0.00 0.00 3.50
1636 2082 0.616111 GGAGCTTGAGGAGAGGGTGA 60.616 60.000 0.00 0.00 0.00 4.02
1637 2083 0.823460 GAGCTTGAGGAGAGGGTGAG 59.177 60.000 0.00 0.00 0.00 3.51
2078 2525 3.876914 TGCCTGTTGAACTTGAGTAACAG 59.123 43.478 15.21 15.21 45.82 3.16
2231 2678 6.169094 CCACTCTTGGCATCTCGATATAAAT 58.831 40.000 0.00 0.00 35.56 1.40
2263 2710 6.879993 TGCAATTCATTACTAAACCCGAAGTA 59.120 34.615 0.00 0.00 0.00 2.24
2273 2720 4.532314 AAACCCGAAGTAAGTAGGAGTG 57.468 45.455 0.00 0.00 0.00 3.51
2279 2726 4.201930 CCGAAGTAAGTAGGAGTGCTACTG 60.202 50.000 23.28 10.60 37.65 2.74
2292 2739 6.998673 AGGAGTGCTACTGTAAAAAGTTTCAT 59.001 34.615 0.00 0.00 0.00 2.57
2310 2757 2.960384 TCATACCTCGGGCTCGAAATTA 59.040 45.455 11.25 1.26 45.47 1.40
2481 2934 6.260050 TGAAAGCGTAATATTTCCTCATGTCC 59.740 38.462 0.00 0.00 35.08 4.02
2819 3273 4.952262 TGATCACTTAGCATTGCAGTTC 57.048 40.909 11.91 3.12 0.00 3.01
2827 3281 7.492669 TCACTTAGCATTGCAGTTCTCTTATAC 59.507 37.037 11.91 0.00 0.00 1.47
2829 3283 7.708752 ACTTAGCATTGCAGTTCTCTTATACTC 59.291 37.037 11.91 0.00 0.00 2.59
2830 3284 5.363939 AGCATTGCAGTTCTCTTATACTCC 58.636 41.667 11.91 0.00 0.00 3.85
2831 3285 4.513318 GCATTGCAGTTCTCTTATACTCCC 59.487 45.833 3.15 0.00 0.00 4.30
2833 3287 5.599999 TTGCAGTTCTCTTATACTCCCTC 57.400 43.478 0.00 0.00 0.00 4.30
2834 3288 3.961408 TGCAGTTCTCTTATACTCCCTCC 59.039 47.826 0.00 0.00 0.00 4.30
2835 3289 3.004944 GCAGTTCTCTTATACTCCCTCCG 59.995 52.174 0.00 0.00 0.00 4.63
2837 3291 5.374921 CAGTTCTCTTATACTCCCTCCGTA 58.625 45.833 0.00 0.00 0.00 4.02
2838 3292 5.826737 CAGTTCTCTTATACTCCCTCCGTAA 59.173 44.000 0.00 0.00 0.00 3.18
2839 3293 6.320672 CAGTTCTCTTATACTCCCTCCGTAAA 59.679 42.308 0.00 0.00 0.00 2.01
2840 3294 6.546772 AGTTCTCTTATACTCCCTCCGTAAAG 59.453 42.308 0.00 0.00 0.00 1.85
2841 3295 6.257994 TCTCTTATACTCCCTCCGTAAAGA 57.742 41.667 0.00 0.00 0.00 2.52
2842 3296 6.666678 TCTCTTATACTCCCTCCGTAAAGAA 58.333 40.000 0.00 0.00 0.00 2.52
2843 3297 7.121382 TCTCTTATACTCCCTCCGTAAAGAAA 58.879 38.462 0.00 0.00 0.00 2.52
2844 3298 7.783596 TCTCTTATACTCCCTCCGTAAAGAAAT 59.216 37.037 0.00 0.00 0.00 2.17
2845 3299 9.075678 CTCTTATACTCCCTCCGTAAAGAAATA 57.924 37.037 0.00 0.00 0.00 1.40
2846 3300 9.597681 TCTTATACTCCCTCCGTAAAGAAATAT 57.402 33.333 0.00 0.00 0.00 1.28
2850 3304 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
2851 3305 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
2852 3306 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
2854 3308 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
2855 3309 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
2856 3310 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
2857 3311 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
2858 3312 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
2871 3325 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
2872 3326 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
2873 3327 7.828712 AGAGCGTTTAGATCACTAAAGTAGTT 58.171 34.615 0.00 0.00 45.42 2.24
2875 3329 8.828688 AGCGTTTAGATCACTAAAGTAGTTTT 57.171 30.769 0.00 0.00 45.42 2.43
2876 3330 8.923683 AGCGTTTAGATCACTAAAGTAGTTTTC 58.076 33.333 0.00 0.00 45.42 2.29
2877 3331 8.706035 GCGTTTAGATCACTAAAGTAGTTTTCA 58.294 33.333 0.00 0.00 45.42 2.69
2929 3383 8.502105 AACACTTTATATTTCTTTACGGAGGG 57.498 34.615 0.00 0.00 0.00 4.30
2930 3384 7.854337 ACACTTTATATTTCTTTACGGAGGGA 58.146 34.615 0.00 0.00 0.00 4.20
2932 3386 7.985752 CACTTTATATTTCTTTACGGAGGGAGT 59.014 37.037 0.00 0.00 0.00 3.85
2933 3387 9.205513 ACTTTATATTTCTTTACGGAGGGAGTA 57.794 33.333 0.00 0.00 0.00 2.59
3006 3480 3.902881 AGCAAACTAGGACTCCATGAG 57.097 47.619 0.00 0.00 35.52 2.90
3070 3544 5.059161 GCATTGCAGTTATCTGATACTCCA 58.941 41.667 3.15 0.00 43.76 3.86
3112 3586 9.952188 TTGTCTTAGATTTGTCTAGATACATCG 57.048 33.333 9.24 0.00 0.00 3.84
3113 3587 9.121658 TGTCTTAGATTTGTCTAGATACATCGT 57.878 33.333 9.24 2.88 0.00 3.73
3114 3588 9.388346 GTCTTAGATTTGTCTAGATACATCGTG 57.612 37.037 9.24 5.22 0.00 4.35
3115 3589 9.338622 TCTTAGATTTGTCTAGATACATCGTGA 57.661 33.333 9.24 6.93 0.00 4.35
3189 3663 8.926715 ATTAAATATTTCTTTTGGAGAACGGC 57.073 30.769 3.39 0.00 43.90 5.68
3223 3697 4.555906 GCACGGTAAACATGTTAGCAAACT 60.556 41.667 12.39 0.00 36.51 2.66
3281 3755 9.979578 AATGCTTGACTTTAATGTTTAATCACA 57.020 25.926 0.00 0.00 0.00 3.58
3422 3896 1.593196 TTGACAGCAAGGCACTACAC 58.407 50.000 0.00 0.00 38.49 2.90
3475 3949 4.695455 GGCATGCTTGAACACTTAAGTAGA 59.305 41.667 18.92 0.00 0.00 2.59
3546 4048 7.870509 ACATCATTATGTATGGACCATATGC 57.129 36.000 17.24 6.34 44.66 3.14
3575 4077 2.977914 ACTGATACAGACACATGGTGC 58.022 47.619 5.76 0.00 34.29 5.01
3586 4088 1.522355 CATGGTGCTGAGGGTAGCG 60.522 63.158 0.00 0.00 46.61 4.26
3662 4164 2.294074 TGGTGTAGCTTGTGGTTCAAC 58.706 47.619 0.00 0.00 32.18 3.18
3701 4203 6.156519 GGTTCCATTGTTGTATTCAGTTTCC 58.843 40.000 0.00 0.00 0.00 3.13
3725 4227 7.614974 TCCTCATAATGAATTGTTTCCATGTGA 59.385 33.333 0.00 0.00 0.00 3.58
3726 4228 7.703621 CCTCATAATGAATTGTTTCCATGTGAC 59.296 37.037 0.00 0.00 0.00 3.67
3762 4265 8.494016 ACATCTTGGAAGTTAGTTATAGCAAC 57.506 34.615 0.00 0.00 0.00 4.17
3763 4266 8.100791 ACATCTTGGAAGTTAGTTATAGCAACA 58.899 33.333 0.00 0.00 0.00 3.33
3841 4344 3.859386 CCATAGAAAAATGCTTCGGTTGC 59.141 43.478 0.00 0.00 0.00 4.17
3945 4452 2.162681 GGCTTTGCAATCAGTAGTGGT 58.837 47.619 0.00 0.00 0.00 4.16
3970 4477 1.521010 CAGATGCAGCTGAGTCCCG 60.521 63.158 27.60 0.00 38.14 5.14
3989 4821 2.080693 CGCAACTTGGTATTGTGGCTA 58.919 47.619 0.00 0.00 34.58 3.93
4080 4916 6.942576 AGATAACTTGTAATCAACAGGCTTGT 59.057 34.615 0.00 0.00 38.72 3.16
4114 4954 7.275920 ACTATAGATAACCAGTGCAAGGAAAG 58.724 38.462 13.05 2.11 0.00 2.62
4130 4970 2.760650 GGAAAGGGCTTGTTTCCCATAG 59.239 50.000 12.69 0.00 45.02 2.23
4134 4974 1.564348 GGGCTTGTTTCCCATAGAGGA 59.436 52.381 0.00 0.00 43.37 3.71
4211 5051 4.825422 CCGCTGTGTGAAGGATATATGAT 58.175 43.478 0.00 0.00 0.00 2.45
4295 5135 5.136828 TGTAAGGAAATGGCTTGTTCTCAA 58.863 37.500 0.00 0.00 0.00 3.02
4298 5138 6.916360 AAGGAAATGGCTTGTTCTCAAATA 57.084 33.333 0.00 0.00 32.87 1.40
4302 5142 3.806949 TGGCTTGTTCTCAAATAGGGT 57.193 42.857 0.00 0.00 32.87 4.34
4303 5143 4.112634 TGGCTTGTTCTCAAATAGGGTT 57.887 40.909 0.00 0.00 32.87 4.11
4366 5206 6.475504 TCCATGAGAAGCTGAACTGAATTAA 58.524 36.000 0.00 0.00 0.00 1.40
4508 5354 2.091112 CCGTGACGCAGCAGAGAAG 61.091 63.158 0.00 0.00 0.00 2.85
4628 5474 4.838152 CGCAGCGGCCACAGGTAT 62.838 66.667 7.00 0.00 36.38 2.73
4854 5702 3.440522 GGTTCTTCCTGTAGATGTTTGGC 59.559 47.826 0.00 0.00 0.00 4.52
4982 5832 5.560724 TCATTCTTTGGGAAAATCGTCTCT 58.439 37.500 0.00 0.00 37.49 3.10
4986 5836 6.709018 TCTTTGGGAAAATCGTCTCTTTTT 57.291 33.333 0.00 0.00 0.00 1.94
4987 5837 6.503524 TCTTTGGGAAAATCGTCTCTTTTTG 58.496 36.000 0.00 0.00 0.00 2.44
5030 5880 7.122055 TGGATTTCTTTATATGACCACCACAAC 59.878 37.037 0.00 0.00 0.00 3.32
5052 5902 4.828939 ACTCATTTTTGCTGATTCAGGTGA 59.171 37.500 15.28 0.00 31.21 4.02
5170 6024 8.391075 TCAAAAGAGTACAAATAAACAGGAGG 57.609 34.615 0.00 0.00 0.00 4.30
5180 6034 2.839098 ACAGGAGGTGTTGGCTGG 59.161 61.111 0.00 0.00 34.94 4.85
5181 6035 1.770110 ACAGGAGGTGTTGGCTGGA 60.770 57.895 0.00 0.00 34.94 3.86
5182 6036 1.352622 ACAGGAGGTGTTGGCTGGAA 61.353 55.000 0.00 0.00 34.94 3.53
5195 6049 3.565307 TGGCTGGAAGAAAATGAGTTGT 58.435 40.909 0.00 0.00 34.07 3.32
5376 6230 3.952323 CAGCCAGATCACTGAAAATGGAT 59.048 43.478 10.33 3.09 46.03 3.41
5414 6268 8.012957 AGAAAAGAGAGTAAACTTCTGAGACA 57.987 34.615 0.00 0.00 0.00 3.41
5437 6305 9.171877 GACAAATAAATCAACCTTCTCTCTGAT 57.828 33.333 0.00 0.00 0.00 2.90
5438 6308 9.171877 ACAAATAAATCAACCTTCTCTCTGATC 57.828 33.333 0.00 0.00 0.00 2.92
5446 6316 1.481363 CTTCTCTCTGATCTGCTGGCA 59.519 52.381 0.00 0.00 0.00 4.92
5457 6327 1.208052 TCTGCTGGCAAGTACCTGATC 59.792 52.381 0.00 0.00 0.00 2.92
5487 6357 1.519455 GATCGCAGCGTACTGGCTT 60.519 57.895 15.93 0.00 44.63 4.35
5502 6372 0.915364 GGCTTGGGATCTTCTCCAGT 59.085 55.000 0.00 0.00 46.98 4.00
5624 6494 2.234168 GAGGTGGGGACTGAGTTAGTTC 59.766 54.545 0.00 0.00 40.53 3.01
5704 6575 4.809426 CCACATACCTGGAAGTTATCGAAC 59.191 45.833 0.00 0.00 32.30 3.95
5712 6583 0.529378 AAGTTATCGAACCGGCGTCT 59.471 50.000 6.01 0.00 36.08 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.699703 CCGGAAATCTTAAAATAAAACCAGAAA 57.300 29.630 0.00 0.00 0.00 2.52
9 10 7.815549 GCCGGAAATCTTAAAATAAAACCAGAA 59.184 33.333 5.05 0.00 0.00 3.02
11 12 6.252655 CGCCGGAAATCTTAAAATAAAACCAG 59.747 38.462 5.05 0.00 0.00 4.00
12 13 6.094061 CGCCGGAAATCTTAAAATAAAACCA 58.906 36.000 5.05 0.00 0.00 3.67
13 14 5.005012 GCGCCGGAAATCTTAAAATAAAACC 59.995 40.000 5.05 0.00 0.00 3.27
14 15 5.573669 TGCGCCGGAAATCTTAAAATAAAAC 59.426 36.000 5.05 0.00 0.00 2.43
15 16 5.710984 TGCGCCGGAAATCTTAAAATAAAA 58.289 33.333 5.05 0.00 0.00 1.52
16 17 5.312120 TGCGCCGGAAATCTTAAAATAAA 57.688 34.783 5.05 0.00 0.00 1.40
17 18 4.966965 TGCGCCGGAAATCTTAAAATAA 57.033 36.364 5.05 0.00 0.00 1.40
18 19 4.023536 GGATGCGCCGGAAATCTTAAAATA 60.024 41.667 5.05 0.00 0.00 1.40
19 20 3.243401 GGATGCGCCGGAAATCTTAAAAT 60.243 43.478 5.05 0.00 0.00 1.82
20 21 2.098443 GGATGCGCCGGAAATCTTAAAA 59.902 45.455 5.05 0.00 0.00 1.52
21 22 1.673920 GGATGCGCCGGAAATCTTAAA 59.326 47.619 5.05 0.00 0.00 1.52
22 23 1.134220 AGGATGCGCCGGAAATCTTAA 60.134 47.619 5.05 0.00 43.43 1.85
23 24 0.468226 AGGATGCGCCGGAAATCTTA 59.532 50.000 5.05 0.00 43.43 2.10
24 25 0.468226 TAGGATGCGCCGGAAATCTT 59.532 50.000 5.05 3.32 43.43 2.40
25 26 0.249911 GTAGGATGCGCCGGAAATCT 60.250 55.000 5.05 0.00 43.43 2.40
26 27 0.249911 AGTAGGATGCGCCGGAAATC 60.250 55.000 5.05 4.04 43.43 2.17
27 28 0.532862 CAGTAGGATGCGCCGGAAAT 60.533 55.000 5.05 0.00 43.43 2.17
28 29 1.153449 CAGTAGGATGCGCCGGAAA 60.153 57.895 5.05 0.00 43.43 3.13
29 30 2.355986 ACAGTAGGATGCGCCGGAA 61.356 57.895 5.05 0.00 43.43 4.30
30 31 2.758327 ACAGTAGGATGCGCCGGA 60.758 61.111 5.05 0.00 43.43 5.14
31 32 2.586079 CACAGTAGGATGCGCCGG 60.586 66.667 4.18 0.00 43.43 6.13
32 33 1.878522 GTCACAGTAGGATGCGCCG 60.879 63.158 4.18 0.00 43.43 6.46
33 34 0.108138 AAGTCACAGTAGGATGCGCC 60.108 55.000 4.18 0.00 0.00 6.53
34 35 1.002366 CAAGTCACAGTAGGATGCGC 58.998 55.000 0.00 0.00 0.00 6.09
35 36 2.370281 ACAAGTCACAGTAGGATGCG 57.630 50.000 0.00 0.00 0.00 4.73
36 37 6.109359 AGATTTACAAGTCACAGTAGGATGC 58.891 40.000 0.00 0.00 0.00 3.91
37 38 9.653287 TTAAGATTTACAAGTCACAGTAGGATG 57.347 33.333 0.00 0.00 0.00 3.51
38 39 9.877178 CTTAAGATTTACAAGTCACAGTAGGAT 57.123 33.333 0.00 0.00 0.00 3.24
39 40 9.085645 TCTTAAGATTTACAAGTCACAGTAGGA 57.914 33.333 0.00 0.00 0.00 2.94
40 41 9.877178 ATCTTAAGATTTACAAGTCACAGTAGG 57.123 33.333 12.37 0.00 0.00 3.18
43 44 9.950496 ATCATCTTAAGATTTACAAGTCACAGT 57.050 29.630 15.49 0.00 31.21 3.55
49 50 8.993121 CGGCATATCATCTTAAGATTTACAAGT 58.007 33.333 15.49 0.38 31.21 3.16
50 51 8.446273 CCGGCATATCATCTTAAGATTTACAAG 58.554 37.037 15.49 3.74 31.21 3.16
51 52 7.094805 GCCGGCATATCATCTTAAGATTTACAA 60.095 37.037 24.80 0.84 31.21 2.41
52 53 6.371548 GCCGGCATATCATCTTAAGATTTACA 59.628 38.462 24.80 2.19 31.21 2.41
53 54 6.595716 AGCCGGCATATCATCTTAAGATTTAC 59.404 38.462 31.54 2.79 31.21 2.01
54 55 6.711277 AGCCGGCATATCATCTTAAGATTTA 58.289 36.000 31.54 10.60 31.21 1.40
55 56 5.564550 AGCCGGCATATCATCTTAAGATTT 58.435 37.500 31.54 8.78 31.21 2.17
56 57 5.171339 AGCCGGCATATCATCTTAAGATT 57.829 39.130 31.54 5.12 31.21 2.40
57 58 4.223700 TGAGCCGGCATATCATCTTAAGAT 59.776 41.667 31.54 12.37 34.56 2.40
58 59 3.578282 TGAGCCGGCATATCATCTTAAGA 59.422 43.478 31.54 7.82 0.00 2.10
59 60 3.930336 TGAGCCGGCATATCATCTTAAG 58.070 45.455 31.54 0.00 0.00 1.85
60 61 3.324846 ACTGAGCCGGCATATCATCTTAA 59.675 43.478 31.54 0.00 0.00 1.85
61 62 2.899900 ACTGAGCCGGCATATCATCTTA 59.100 45.455 31.54 0.00 0.00 2.10
62 63 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
63 64 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
64 65 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
65 66 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
66 67 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
67 68 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
68 69 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
69 70 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
70 71 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
71 72 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
72 73 4.200283 CCGAGAGACTGAGCCGGC 62.200 72.222 21.89 21.89 33.47 6.13
73 74 2.438614 TCCGAGAGACTGAGCCGG 60.439 66.667 0.00 0.00 41.36 6.13
74 75 0.817634 ATCTCCGAGAGACTGAGCCG 60.818 60.000 4.07 0.00 41.76 5.52
75 76 0.667993 CATCTCCGAGAGACTGAGCC 59.332 60.000 4.07 0.00 41.76 4.70
76 77 0.030638 GCATCTCCGAGAGACTGAGC 59.969 60.000 4.07 5.25 41.76 4.26
77 78 1.603802 GAGCATCTCCGAGAGACTGAG 59.396 57.143 4.07 0.00 41.76 3.35
78 79 1.065126 TGAGCATCTCCGAGAGACTGA 60.065 52.381 4.07 0.00 41.76 3.41
79 80 1.387539 TGAGCATCTCCGAGAGACTG 58.612 55.000 4.07 0.00 41.76 3.51
80 81 2.363306 ATGAGCATCTCCGAGAGACT 57.637 50.000 4.07 3.60 41.76 3.24
81 82 2.487762 CCTATGAGCATCTCCGAGAGAC 59.512 54.545 4.07 0.00 41.76 3.36
82 83 2.554124 CCCTATGAGCATCTCCGAGAGA 60.554 54.545 4.07 6.14 43.20 3.10
83 84 1.818060 CCCTATGAGCATCTCCGAGAG 59.182 57.143 4.07 0.00 34.92 3.20
84 85 1.548809 CCCCTATGAGCATCTCCGAGA 60.549 57.143 0.00 0.00 34.92 4.04
85 86 0.894141 CCCCTATGAGCATCTCCGAG 59.106 60.000 0.00 0.00 34.92 4.63
86 87 0.542938 CCCCCTATGAGCATCTCCGA 60.543 60.000 0.00 0.00 34.92 4.55
87 88 0.542938 TCCCCCTATGAGCATCTCCG 60.543 60.000 0.00 0.00 34.92 4.63
88 89 1.274712 CTCCCCCTATGAGCATCTCC 58.725 60.000 0.00 0.00 34.92 3.71
89 90 1.274712 CCTCCCCCTATGAGCATCTC 58.725 60.000 0.00 0.00 34.92 2.75
90 91 0.178879 CCCTCCCCCTATGAGCATCT 60.179 60.000 0.00 0.00 34.92 2.90
91 92 0.474660 ACCCTCCCCCTATGAGCATC 60.475 60.000 0.00 0.00 0.00 3.91
92 93 0.769776 CACCCTCCCCCTATGAGCAT 60.770 60.000 0.00 0.00 0.00 3.79
93 94 1.384502 CACCCTCCCCCTATGAGCA 60.385 63.158 0.00 0.00 0.00 4.26
94 95 1.384643 ACACCCTCCCCCTATGAGC 60.385 63.158 0.00 0.00 0.00 4.26
95 96 1.700042 GCACACCCTCCCCCTATGAG 61.700 65.000 0.00 0.00 0.00 2.90
96 97 1.692749 GCACACCCTCCCCCTATGA 60.693 63.158 0.00 0.00 0.00 2.15
97 98 2.919043 GCACACCCTCCCCCTATG 59.081 66.667 0.00 0.00 0.00 2.23
98 99 2.768344 CGCACACCCTCCCCCTAT 60.768 66.667 0.00 0.00 0.00 2.57
99 100 4.326227 ACGCACACCCTCCCCCTA 62.326 66.667 0.00 0.00 0.00 3.53
102 103 2.666098 ATACACGCACACCCTCCCC 61.666 63.158 0.00 0.00 0.00 4.81
103 104 1.449601 CATACACGCACACCCTCCC 60.450 63.158 0.00 0.00 0.00 4.30
104 105 2.106683 GCATACACGCACACCCTCC 61.107 63.158 0.00 0.00 0.00 4.30
105 106 2.106683 GGCATACACGCACACCCTC 61.107 63.158 0.00 0.00 0.00 4.30
106 107 2.046314 GGCATACACGCACACCCT 60.046 61.111 0.00 0.00 0.00 4.34
107 108 1.241315 AAAGGCATACACGCACACCC 61.241 55.000 0.00 0.00 0.00 4.61
108 109 1.444836 TAAAGGCATACACGCACACC 58.555 50.000 0.00 0.00 0.00 4.16
109 110 4.260620 CCTTATAAAGGCATACACGCACAC 60.261 45.833 0.00 0.00 42.78 3.82
110 111 3.874543 CCTTATAAAGGCATACACGCACA 59.125 43.478 0.00 0.00 42.78 4.57
111 112 4.468095 CCTTATAAAGGCATACACGCAC 57.532 45.455 0.00 0.00 42.78 5.34
123 124 6.128553 ACGCGCATACATTCATCCTTATAAAG 60.129 38.462 5.73 0.00 0.00 1.85
124 125 5.699001 ACGCGCATACATTCATCCTTATAAA 59.301 36.000 5.73 0.00 0.00 1.40
125 126 5.234752 ACGCGCATACATTCATCCTTATAA 58.765 37.500 5.73 0.00 0.00 0.98
126 127 4.816392 ACGCGCATACATTCATCCTTATA 58.184 39.130 5.73 0.00 0.00 0.98
127 128 3.664107 ACGCGCATACATTCATCCTTAT 58.336 40.909 5.73 0.00 0.00 1.73
128 129 3.106242 ACGCGCATACATTCATCCTTA 57.894 42.857 5.73 0.00 0.00 2.69
129 130 1.953559 ACGCGCATACATTCATCCTT 58.046 45.000 5.73 0.00 0.00 3.36
130 131 2.812358 TACGCGCATACATTCATCCT 57.188 45.000 5.73 0.00 0.00 3.24
131 132 2.736721 ACATACGCGCATACATTCATCC 59.263 45.455 5.73 0.00 0.00 3.51
132 133 4.488731 CGTACATACGCGCATACATTCATC 60.489 45.833 5.73 0.00 43.14 2.92
133 134 3.363724 CGTACATACGCGCATACATTCAT 59.636 43.478 5.73 0.00 43.14 2.57
134 135 2.722116 CGTACATACGCGCATACATTCA 59.278 45.455 5.73 0.00 43.14 2.57
135 136 3.333978 CGTACATACGCGCATACATTC 57.666 47.619 5.73 0.00 43.14 2.67
146 147 1.137459 TGCAAGCGCTCGTACATACG 61.137 55.000 12.06 5.06 42.84 3.06
147 148 1.190323 GATGCAAGCGCTCGTACATAC 59.810 52.381 12.06 3.50 39.64 2.39
148 149 1.067060 AGATGCAAGCGCTCGTACATA 59.933 47.619 12.06 0.00 39.64 2.29
149 150 0.179100 AGATGCAAGCGCTCGTACAT 60.179 50.000 12.06 12.32 39.64 2.29
150 151 1.078201 CAGATGCAAGCGCTCGTACA 61.078 55.000 12.06 7.28 39.64 2.90
151 152 1.078759 ACAGATGCAAGCGCTCGTAC 61.079 55.000 12.06 0.45 39.64 3.67
152 153 0.454196 TACAGATGCAAGCGCTCGTA 59.546 50.000 12.06 0.00 39.64 3.43
153 154 1.078759 GTACAGATGCAAGCGCTCGT 61.079 55.000 12.06 0.00 39.64 4.18
154 155 0.803768 AGTACAGATGCAAGCGCTCG 60.804 55.000 12.06 0.00 39.64 5.03
155 156 0.649475 CAGTACAGATGCAAGCGCTC 59.351 55.000 12.06 0.00 39.64 5.03
156 157 0.036952 ACAGTACAGATGCAAGCGCT 60.037 50.000 2.64 2.64 39.64 5.92
157 158 0.095935 CACAGTACAGATGCAAGCGC 59.904 55.000 0.00 0.00 39.24 5.92
158 159 1.432514 ACACAGTACAGATGCAAGCG 58.567 50.000 0.00 0.00 0.00 4.68
159 160 5.179368 TCTTTAACACAGTACAGATGCAAGC 59.821 40.000 0.00 0.00 0.00 4.01
160 161 6.785488 TCTTTAACACAGTACAGATGCAAG 57.215 37.500 0.00 0.00 0.00 4.01
161 162 7.561021 TTTCTTTAACACAGTACAGATGCAA 57.439 32.000 0.00 0.00 0.00 4.08
162 163 7.744087 ATTTCTTTAACACAGTACAGATGCA 57.256 32.000 0.00 0.00 0.00 3.96
189 190 9.965824 GGTCACTTGATTTTGATTTCTAGAAAA 57.034 29.630 21.26 5.54 33.56 2.29
190 191 8.576442 GGGTCACTTGATTTTGATTTCTAGAAA 58.424 33.333 19.83 19.83 34.46 2.52
191 192 7.723616 TGGGTCACTTGATTTTGATTTCTAGAA 59.276 33.333 0.00 0.00 0.00 2.10
192 193 7.230747 TGGGTCACTTGATTTTGATTTCTAGA 58.769 34.615 0.00 0.00 0.00 2.43
193 194 7.452880 TGGGTCACTTGATTTTGATTTCTAG 57.547 36.000 0.00 0.00 0.00 2.43
194 195 7.890127 AGATGGGTCACTTGATTTTGATTTCTA 59.110 33.333 0.00 0.00 0.00 2.10
195 196 6.723052 AGATGGGTCACTTGATTTTGATTTCT 59.277 34.615 0.00 0.00 0.00 2.52
196 197 6.928520 AGATGGGTCACTTGATTTTGATTTC 58.071 36.000 0.00 0.00 0.00 2.17
197 198 6.923199 AGATGGGTCACTTGATTTTGATTT 57.077 33.333 0.00 0.00 0.00 2.17
198 199 6.923199 AAGATGGGTCACTTGATTTTGATT 57.077 33.333 0.00 0.00 0.00 2.57
199 200 7.835682 TCATAAGATGGGTCACTTGATTTTGAT 59.164 33.333 0.00 0.00 0.00 2.57
200 201 7.174413 TCATAAGATGGGTCACTTGATTTTGA 58.826 34.615 0.00 0.00 0.00 2.69
201 202 7.395190 TCATAAGATGGGTCACTTGATTTTG 57.605 36.000 0.00 0.00 0.00 2.44
202 203 8.421249 TTTCATAAGATGGGTCACTTGATTTT 57.579 30.769 0.00 0.00 0.00 1.82
203 204 8.421249 TTTTCATAAGATGGGTCACTTGATTT 57.579 30.769 0.00 0.00 0.00 2.17
204 205 8.421249 TTTTTCATAAGATGGGTCACTTGATT 57.579 30.769 0.00 0.00 0.00 2.57
255 256 0.841289 TGGAGTCTGGACGGGTTTTT 59.159 50.000 0.00 0.00 36.20 1.94
256 257 0.396811 CTGGAGTCTGGACGGGTTTT 59.603 55.000 0.00 0.00 36.20 2.43
259 260 0.252284 ATTCTGGAGTCTGGACGGGT 60.252 55.000 0.00 0.00 36.20 5.28
260 261 0.905357 AATTCTGGAGTCTGGACGGG 59.095 55.000 0.00 0.00 36.20 5.28
261 262 2.234908 AGAAATTCTGGAGTCTGGACGG 59.765 50.000 0.00 0.00 36.20 4.79
278 279 3.640029 ACTGTTCGGTAGGAGTTCAGAAA 59.360 43.478 0.00 0.00 0.00 2.52
714 730 2.619074 GGGTTTGATTGAGGAGGAGGTG 60.619 54.545 0.00 0.00 0.00 4.00
715 731 1.636003 GGGTTTGATTGAGGAGGAGGT 59.364 52.381 0.00 0.00 0.00 3.85
716 732 1.064389 GGGGTTTGATTGAGGAGGAGG 60.064 57.143 0.00 0.00 0.00 4.30
717 733 1.064389 GGGGGTTTGATTGAGGAGGAG 60.064 57.143 0.00 0.00 0.00 3.69
718 734 0.999712 GGGGGTTTGATTGAGGAGGA 59.000 55.000 0.00 0.00 0.00 3.71
719 735 0.704076 TGGGGGTTTGATTGAGGAGG 59.296 55.000 0.00 0.00 0.00 4.30
720 736 1.616994 GGTGGGGGTTTGATTGAGGAG 60.617 57.143 0.00 0.00 0.00 3.69
721 737 0.407918 GGTGGGGGTTTGATTGAGGA 59.592 55.000 0.00 0.00 0.00 3.71
722 738 0.614697 GGGTGGGGGTTTGATTGAGG 60.615 60.000 0.00 0.00 0.00 3.86
723 739 0.965363 CGGGTGGGGGTTTGATTGAG 60.965 60.000 0.00 0.00 0.00 3.02
724 740 1.075836 CGGGTGGGGGTTTGATTGA 59.924 57.895 0.00 0.00 0.00 2.57
725 741 2.645192 GCGGGTGGGGGTTTGATTG 61.645 63.158 0.00 0.00 0.00 2.67
726 742 2.283604 GCGGGTGGGGGTTTGATT 60.284 61.111 0.00 0.00 0.00 2.57
727 743 4.733542 CGCGGGTGGGGGTTTGAT 62.734 66.667 0.00 0.00 0.00 2.57
799 840 2.264794 CAGCTCCGCGGTTAGGTT 59.735 61.111 27.15 9.23 0.00 3.50
1329 1775 1.833049 GGATCGGACCTCATCCCGT 60.833 63.158 7.78 0.00 46.04 5.28
1377 1823 2.755876 ATCTGCTCGGCGAGGACA 60.756 61.111 35.03 23.21 0.00 4.02
1437 1883 0.799917 CGTCTGAGTCCACGAGCATG 60.800 60.000 5.95 0.00 38.32 4.06
1488 1934 0.038159 CCACGTCTGTCTCCTTCCAC 60.038 60.000 0.00 0.00 0.00 4.02
1604 2050 0.036294 AAGCTCCGTAACCTTGCTCC 60.036 55.000 0.00 0.00 33.10 4.70
1614 2060 0.395862 CCCTCTCCTCAAGCTCCGTA 60.396 60.000 0.00 0.00 0.00 4.02
1636 2082 4.787280 CTCCCGGGTCAGCTCCCT 62.787 72.222 22.86 0.00 44.95 4.20
1637 2083 4.779733 TCTCCCGGGTCAGCTCCC 62.780 72.222 22.86 0.04 43.78 4.30
1875 2321 7.230510 ACAGAACAAACAATTCAGTATGGCTAA 59.769 33.333 0.00 0.00 36.16 3.09
2078 2525 8.706322 ATCCAATGGGTAGTAATTTCCATTAC 57.294 34.615 0.00 0.00 45.14 1.89
2094 2541 4.822685 TTCCACATCAAAATCCAATGGG 57.177 40.909 0.00 0.00 0.00 4.00
2231 2678 8.032451 GGGTTTAGTAATGAATTGCAGCTTTTA 58.968 33.333 0.00 0.00 0.00 1.52
2255 2702 2.100989 AGCACTCCTACTTACTTCGGG 58.899 52.381 0.00 0.00 0.00 5.14
2273 2720 7.412672 CCGAGGTATGAAACTTTTTACAGTAGC 60.413 40.741 0.00 0.00 0.00 3.58
2279 2726 4.698780 AGCCCGAGGTATGAAACTTTTTAC 59.301 41.667 0.00 0.00 0.00 2.01
2292 2739 1.410153 GGTAATTTCGAGCCCGAGGTA 59.590 52.381 0.00 0.00 46.39 3.08
2310 2757 4.790790 AGAAGATGGGAAGTAGGAAATGGT 59.209 41.667 0.00 0.00 0.00 3.55
2527 2980 2.300723 ACGGTTATGTGTTGCCTCACTA 59.699 45.455 9.21 0.00 38.90 2.74
2790 3244 6.071784 TGCAATGCTAAGTGATCAATTGAGTT 60.072 34.615 18.22 7.23 0.00 3.01
2819 3273 6.956202 TTCTTTACGGAGGGAGTATAAGAG 57.044 41.667 0.00 0.00 30.72 2.85
2827 3281 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
2829 3283 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
2830 3284 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
2831 3285 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
2833 3287 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
2845 3299 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
2846 3300 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
2848 3302 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
2849 3303 8.463456 AAACTACTTTAGTGATCTAAACGCTC 57.537 34.615 0.00 0.00 40.05 5.03
2850 3304 8.828688 AAAACTACTTTAGTGATCTAAACGCT 57.171 30.769 0.00 0.00 40.05 5.07
2851 3305 8.706035 TGAAAACTACTTTAGTGATCTAAACGC 58.294 33.333 0.00 0.00 40.05 4.84
2904 3358 8.323567 TCCCTCCGTAAAGAAATATAAAGTGTT 58.676 33.333 0.00 0.00 0.00 3.32
2906 3360 7.985752 ACTCCCTCCGTAAAGAAATATAAAGTG 59.014 37.037 0.00 0.00 0.00 3.16
2907 3361 8.087303 ACTCCCTCCGTAAAGAAATATAAAGT 57.913 34.615 0.00 0.00 0.00 2.66
2914 3368 7.909485 TCTAATACTCCCTCCGTAAAGAAAT 57.091 36.000 0.00 0.00 0.00 2.17
2915 3369 7.909485 ATCTAATACTCCCTCCGTAAAGAAA 57.091 36.000 0.00 0.00 0.00 2.52
2916 3370 9.597681 AATATCTAATACTCCCTCCGTAAAGAA 57.402 33.333 0.00 0.00 0.00 2.52
2917 3371 9.597681 AAATATCTAATACTCCCTCCGTAAAGA 57.402 33.333 0.00 0.00 0.00 2.52
2918 3372 9.857957 GAAATATCTAATACTCCCTCCGTAAAG 57.142 37.037 0.00 0.00 0.00 1.85
2919 3373 9.597681 AGAAATATCTAATACTCCCTCCGTAAA 57.402 33.333 0.00 0.00 32.88 2.01
2920 3374 9.597681 AAGAAATATCTAATACTCCCTCCGTAA 57.402 33.333 0.00 0.00 33.77 3.18
2921 3375 9.597681 AAAGAAATATCTAATACTCCCTCCGTA 57.402 33.333 0.00 0.00 33.77 4.02
2922 3376 8.493787 AAAGAAATATCTAATACTCCCTCCGT 57.506 34.615 0.00 0.00 33.77 4.69
2923 3377 9.209175 CAAAAGAAATATCTAATACTCCCTCCG 57.791 37.037 0.00 0.00 33.77 4.63
2924 3378 9.508642 CCAAAAGAAATATCTAATACTCCCTCC 57.491 37.037 0.00 0.00 33.77 4.30
3070 3544 7.918076 TCTAAGACAAGTAATTTGGGACAGAT 58.082 34.615 0.00 0.00 42.39 2.90
3106 3580 7.562454 TGTCTAGATACATTGTCACGATGTA 57.438 36.000 18.55 18.55 42.35 2.29
3107 3581 6.451064 TGTCTAGATACATTGTCACGATGT 57.549 37.500 15.30 15.30 40.59 3.06
3108 3582 7.755582 TTTGTCTAGATACATTGTCACGATG 57.244 36.000 3.16 3.16 0.00 3.84
3109 3583 8.417106 AGATTTGTCTAGATACATTGTCACGAT 58.583 33.333 0.00 0.00 0.00 3.73
3110 3584 7.772166 AGATTTGTCTAGATACATTGTCACGA 58.228 34.615 0.00 0.00 0.00 4.35
3111 3585 7.993821 AGATTTGTCTAGATACATTGTCACG 57.006 36.000 0.00 0.00 0.00 4.35
3187 3661 5.006552 TGTTTACCGTGCTTAATATTACGCC 59.993 40.000 18.27 10.47 35.39 5.68
3189 3663 7.623770 ACATGTTTACCGTGCTTAATATTACG 58.376 34.615 0.00 0.00 33.01 3.18
3269 3743 8.830580 CGACTCCAATTCTATGTGATTAAACAT 58.169 33.333 0.00 0.00 43.21 2.71
3270 3744 7.822334 ACGACTCCAATTCTATGTGATTAAACA 59.178 33.333 0.00 0.00 0.00 2.83
3271 3745 8.197988 ACGACTCCAATTCTATGTGATTAAAC 57.802 34.615 0.00 0.00 0.00 2.01
3272 3746 8.258007 AGACGACTCCAATTCTATGTGATTAAA 58.742 33.333 0.00 0.00 0.00 1.52
3343 3817 1.335324 GCCAGCATGTTCACTGTGTTC 60.335 52.381 7.79 3.20 31.76 3.18
3422 3896 5.615544 CGATCCTGTGCTTTCTTACACTTTG 60.616 44.000 0.00 0.00 37.68 2.77
3536 4038 6.471233 TCAGTATAGCATAGCATATGGTCC 57.529 41.667 11.40 1.53 0.00 4.46
3546 4048 7.972832 CCATGTGTCTGTATCAGTATAGCATAG 59.027 40.741 0.00 0.00 32.61 2.23
3575 4077 2.798148 AAAACCCGCGCTACCCTCAG 62.798 60.000 5.56 0.00 0.00 3.35
3586 4088 8.565416 ACTATGCTAAATAAGAATAAAACCCGC 58.435 33.333 0.00 0.00 0.00 6.13
3587 4089 9.878599 CACTATGCTAAATAAGAATAAAACCCG 57.121 33.333 0.00 0.00 0.00 5.28
3638 4140 2.781681 ACCACAAGCTACACCATACC 57.218 50.000 0.00 0.00 0.00 2.73
3662 4164 7.719483 ACAATGGAACCATAATAAAGCTGATG 58.281 34.615 6.77 0.38 35.31 3.07
3725 4227 5.891551 ACTTCCAAGATGTAACAACAAAGGT 59.108 36.000 0.00 0.00 0.00 3.50
3726 4228 6.391227 ACTTCCAAGATGTAACAACAAAGG 57.609 37.500 0.00 0.00 0.00 3.11
3841 4344 8.110002 GCTTAAGGCATCAAAATTATTGTTTCG 58.890 33.333 4.29 0.00 41.35 3.46
3958 4465 1.302033 AAGTTGCGGGACTCAGCTG 60.302 57.895 7.63 7.63 34.24 4.24
3970 4477 5.530915 TCATATAGCCACAATACCAAGTTGC 59.469 40.000 0.00 0.00 0.00 4.17
3989 4821 8.571336 GCAAGCACAATAAAGTATCCTTCATAT 58.429 33.333 0.00 0.00 0.00 1.78
4080 4916 9.542462 GCACTGGTTATCTATAGTTATCAACAA 57.458 33.333 0.00 0.00 0.00 2.83
4092 4932 5.440610 CCTTTCCTTGCACTGGTTATCTAT 58.559 41.667 5.01 0.00 0.00 1.98
4114 4954 1.564348 TCCTCTATGGGAAACAAGCCC 59.436 52.381 0.00 0.00 46.22 5.19
4177 5017 1.266718 ACACAGCGGCATTACAAGTTG 59.733 47.619 1.45 0.00 0.00 3.16
4211 5051 3.257375 AGACACTACGCATCCTTGTACAA 59.743 43.478 8.28 8.28 0.00 2.41
4252 5092 8.306761 CCTTACAACTTATGCTCTTTCCAAAAT 58.693 33.333 0.00 0.00 0.00 1.82
4253 5093 7.504238 TCCTTACAACTTATGCTCTTTCCAAAA 59.496 33.333 0.00 0.00 0.00 2.44
4254 5094 7.001674 TCCTTACAACTTATGCTCTTTCCAAA 58.998 34.615 0.00 0.00 0.00 3.28
4255 5095 6.539173 TCCTTACAACTTATGCTCTTTCCAA 58.461 36.000 0.00 0.00 0.00 3.53
4256 5096 6.121776 TCCTTACAACTTATGCTCTTTCCA 57.878 37.500 0.00 0.00 0.00 3.53
4257 5097 7.448748 TTTCCTTACAACTTATGCTCTTTCC 57.551 36.000 0.00 0.00 0.00 3.13
4295 5135 3.009143 AGAAAGGACGCTTCAACCCTATT 59.991 43.478 0.00 0.00 0.00 1.73
4298 5138 0.765510 AGAAAGGACGCTTCAACCCT 59.234 50.000 0.00 0.00 0.00 4.34
4302 5142 1.946768 CAACCAGAAAGGACGCTTCAA 59.053 47.619 0.00 0.00 41.22 2.69
4303 5143 1.593196 CAACCAGAAAGGACGCTTCA 58.407 50.000 0.00 0.00 41.22 3.02
4339 5179 3.773667 TCAGTTCAGCTTCTCATGGATCT 59.226 43.478 0.00 0.00 0.00 2.75
4493 5339 1.181741 AGGACTTCTCTGCTGCGTCA 61.182 55.000 0.00 0.00 0.00 4.35
4499 5345 3.367910 CGAGCTTTAAGGACTTCTCTGCT 60.368 47.826 0.00 0.00 0.00 4.24
4508 5354 0.389426 TGTCGGCGAGCTTTAAGGAC 60.389 55.000 11.20 0.00 0.00 3.85
4628 5474 4.600055 TGCCATGGCCAGCACACA 62.600 61.111 33.44 9.85 41.09 3.72
4854 5702 3.616379 ACAAACAAGCACGGACAAATTTG 59.384 39.130 16.67 16.67 33.17 2.32
4982 5832 7.235079 TCCAGGGTAAAGTGATATGTCAAAAA 58.765 34.615 0.00 0.00 35.80 1.94
4986 5836 6.575244 AATCCAGGGTAAAGTGATATGTCA 57.425 37.500 0.00 0.00 0.00 3.58
4987 5837 7.283329 AGAAATCCAGGGTAAAGTGATATGTC 58.717 38.462 0.00 0.00 0.00 3.06
5030 5880 5.381174 TCACCTGAATCAGCAAAAATGAG 57.619 39.130 4.40 0.00 0.00 2.90
5082 5932 6.886459 AGTTGGCAAGTCTTCATATGTTACAT 59.114 34.615 0.00 2.58 0.00 2.29
5170 6024 3.319122 ACTCATTTTCTTCCAGCCAACAC 59.681 43.478 0.00 0.00 0.00 3.32
5174 6028 3.565307 ACAACTCATTTTCTTCCAGCCA 58.435 40.909 0.00 0.00 0.00 4.75
5180 6034 7.475840 ACACTTCAGAACAACTCATTTTCTTC 58.524 34.615 0.00 0.00 0.00 2.87
5181 6035 7.396540 ACACTTCAGAACAACTCATTTTCTT 57.603 32.000 0.00 0.00 0.00 2.52
5182 6036 7.552687 TGTACACTTCAGAACAACTCATTTTCT 59.447 33.333 0.00 0.00 0.00 2.52
5304 6158 2.109517 CTCCATCCTGAGCATCCGGG 62.110 65.000 0.00 0.00 40.28 5.73
5350 6204 0.538584 TTCAGTGATCTGGCTGCGAT 59.461 50.000 0.00 0.00 41.59 4.58
5384 6238 9.838339 TCAGAAGTTTACTCTCTTTTCTCAATT 57.162 29.630 0.00 0.00 0.00 2.32
5409 6263 8.663911 CAGAGAGAAGGTTGATTTATTTGTCTC 58.336 37.037 2.56 2.56 38.02 3.36
5414 6268 9.393512 CAGATCAGAGAGAAGGTTGATTTATTT 57.606 33.333 0.00 0.00 30.85 1.40
5437 6305 1.208052 GATCAGGTACTTGCCAGCAGA 59.792 52.381 0.00 0.00 34.60 4.26
5438 6308 1.661341 GATCAGGTACTTGCCAGCAG 58.339 55.000 0.00 0.00 34.60 4.24
5446 6316 0.978146 AGCCAGCGGATCAGGTACTT 60.978 55.000 0.00 0.00 34.60 2.24
5624 6494 1.337071 GCTCATTCATGGCATGTCCTG 59.663 52.381 25.62 19.74 35.26 3.86
5633 6503 0.959553 GAGGGCATGCTCATTCATGG 59.040 55.000 22.09 0.00 42.97 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.