Multiple sequence alignment - TraesCS5B01G371300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G371300 chr5B 100.000 4059 0 0 1 4059 549968896 549972954 0.000000e+00 7496
1 TraesCS5B01G371300 chr5B 87.629 97 5 3 1330 1426 664942009 664942098 5.550000e-19 106
2 TraesCS5B01G371300 chr5D 90.382 2641 158 51 1448 4043 449991038 449993627 0.000000e+00 3382
3 TraesCS5B01G371300 chr5D 86.282 277 25 6 1060 1328 449990705 449990976 5.130000e-74 289
4 TraesCS5B01G371300 chr5D 78.713 202 20 14 862 1050 449990300 449990491 3.320000e-21 113
5 TraesCS5B01G371300 chr5A 89.951 2667 152 61 1457 4059 569283427 569286041 0.000000e+00 3334
6 TraesCS5B01G371300 chr5A 86.505 289 34 3 1 288 569280736 569281020 3.050000e-81 313
7 TraesCS5B01G371300 chr5A 82.230 287 24 12 1060 1328 569283098 569283375 5.280000e-54 222
8 TraesCS5B01G371300 chr2D 87.189 281 19 12 2742 3006 543054162 543053883 1.830000e-78 303
9 TraesCS5B01G371300 chr3B 89.130 92 4 2 1330 1421 492230078 492229993 4.290000e-20 110
10 TraesCS5B01G371300 chr7B 89.011 91 4 2 1330 1420 13112403 13112319 1.540000e-19 108
11 TraesCS5B01G371300 chr6D 87.000 100 6 3 1324 1423 380781872 380781780 5.550000e-19 106
12 TraesCS5B01G371300 chr1D 85.321 109 9 3 1312 1419 211632437 211632335 5.550000e-19 106
13 TraesCS5B01G371300 chr1A 87.500 96 6 2 1330 1425 327008624 327008713 5.550000e-19 106
14 TraesCS5B01G371300 chr2A 86.869 99 6 3 1330 1427 498194914 498195006 2.000000e-18 104
15 TraesCS5B01G371300 chr6B 84.545 110 10 3 1311 1419 440684052 440684155 7.180000e-18 102
16 TraesCS5B01G371300 chr3D 84.404 109 9 4 1319 1426 602232038 602231937 2.580000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G371300 chr5B 549968896 549972954 4058 False 7496.000000 7496 100.000000 1 4059 1 chr5B.!!$F1 4058
1 TraesCS5B01G371300 chr5D 449990300 449993627 3327 False 1261.333333 3382 85.125667 862 4043 3 chr5D.!!$F1 3181
2 TraesCS5B01G371300 chr5A 569280736 569286041 5305 False 1289.666667 3334 86.228667 1 4059 3 chr5A.!!$F1 4058

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
626 692 0.040646 TCTTTCCGGGCTAGAGACCA 59.959 55.0 0.00 0.0 46.09 4.02 F
856 2078 0.109319 ACACATTGCCGCGAATTTCC 60.109 50.0 8.23 0.0 0.00 3.13 F
857 2079 0.171007 CACATTGCCGCGAATTTCCT 59.829 50.0 8.23 0.0 0.00 3.36 F
2118 3652 0.533755 CTGATTCAGGCCCGACATCC 60.534 60.0 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1677 3175 0.169009 GCTTCCCTGTTCATTCACGC 59.831 55.0 0.00 0.0 0.00 5.34 R
1680 3178 0.400213 ACCGCTTCCCTGTTCATTCA 59.600 50.0 0.00 0.0 0.00 2.57 R
2611 4153 0.529378 AAGTTATCGAACCGGCGTCT 59.471 50.0 6.01 0.0 36.08 4.18 R
3141 4700 1.352622 ACAGGAGGTGTTGGCTGGAA 61.353 55.0 0.00 0.0 34.94 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.029918 GGTTCTCCTTTGCATGTGGTTC 60.030 50.000 0.00 0.00 0.00 3.62
53 54 0.540133 TCTGCTTTGCTCATGGCCAA 60.540 50.000 10.96 0.00 40.92 4.52
56 57 1.252904 GCTTTGCTCATGGCCAAGGA 61.253 55.000 10.96 10.24 42.00 3.36
57 58 0.529378 CTTTGCTCATGGCCAAGGAC 59.471 55.000 10.96 1.25 39.23 3.85
74 75 2.178521 CGACGGGAAGGAGTGTCG 59.821 66.667 0.00 0.00 46.57 4.35
76 77 1.212229 GACGGGAAGGAGTGTCGTC 59.788 63.158 0.00 0.00 42.22 4.20
119 121 1.125847 CGTAGCATTCGCCGCAAAAC 61.126 55.000 0.00 0.00 39.83 2.43
124 126 1.602323 ATTCGCCGCAAAACTGGGA 60.602 52.632 0.00 0.00 0.00 4.37
132 134 1.613437 CGCAAAACTGGGAAAGACCAT 59.387 47.619 0.00 0.00 40.36 3.55
176 178 3.906718 TCTCGCCGGAGAAGAGAC 58.093 61.111 9.83 0.00 46.11 3.36
186 188 0.323542 GAGAAGAGACGGGAGGGTGA 60.324 60.000 0.00 0.00 0.00 4.02
194 196 3.775654 GGGAGGGTGACGCCAGAG 61.776 72.222 7.48 0.00 41.44 3.35
234 236 2.340328 GGGGCGGACAACAATGACC 61.340 63.158 0.00 0.00 37.92 4.02
240 242 0.889186 GGACAACAATGACCGTGCCT 60.889 55.000 0.00 0.00 31.86 4.75
243 245 1.877443 ACAACAATGACCGTGCCTAAC 59.123 47.619 0.00 0.00 0.00 2.34
254 256 2.208619 TGCCTAACCGGGTCGTTCA 61.209 57.895 6.32 0.00 0.00 3.18
256 258 1.667151 CCTAACCGGGTCGTTCACA 59.333 57.895 6.32 0.00 0.00 3.58
258 260 1.338389 CCTAACCGGGTCGTTCACATT 60.338 52.381 6.32 0.00 0.00 2.71
259 261 2.419667 CTAACCGGGTCGTTCACATTT 58.580 47.619 6.32 0.00 0.00 2.32
273 275 9.968620 GTCGTTCACATTTCTTTATTTTTAACG 57.031 29.630 0.00 0.00 36.94 3.18
293 308 1.757682 AGAGTTGCCTCTCCGTCTAG 58.242 55.000 2.31 0.00 45.08 2.43
356 371 1.800229 AATGGTTCCGGGAAAGGGCT 61.800 55.000 11.82 0.00 0.00 5.19
357 372 0.917333 ATGGTTCCGGGAAAGGGCTA 60.917 55.000 11.82 0.00 0.00 3.93
358 373 1.223763 GGTTCCGGGAAAGGGCTAG 59.776 63.158 11.82 0.00 0.00 3.42
359 374 1.269703 GGTTCCGGGAAAGGGCTAGA 61.270 60.000 11.82 0.00 0.00 2.43
360 375 0.837940 GTTCCGGGAAAGGGCTAGAT 59.162 55.000 11.82 0.00 0.00 1.98
361 376 1.212195 GTTCCGGGAAAGGGCTAGATT 59.788 52.381 11.82 0.00 0.00 2.40
362 377 1.591768 TCCGGGAAAGGGCTAGATTT 58.408 50.000 0.00 0.00 0.00 2.17
363 378 1.920351 TCCGGGAAAGGGCTAGATTTT 59.080 47.619 0.00 0.00 0.00 1.82
364 379 2.310647 TCCGGGAAAGGGCTAGATTTTT 59.689 45.455 0.00 0.00 0.00 1.94
382 397 2.436964 TTTTAGGTAGGGTGGGTGGA 57.563 50.000 0.00 0.00 0.00 4.02
383 398 1.961133 TTTAGGTAGGGTGGGTGGAG 58.039 55.000 0.00 0.00 0.00 3.86
384 399 0.043637 TTAGGTAGGGTGGGTGGAGG 59.956 60.000 0.00 0.00 0.00 4.30
385 400 1.893588 TAGGTAGGGTGGGTGGAGGG 61.894 65.000 0.00 0.00 0.00 4.30
386 401 3.408853 GTAGGGTGGGTGGAGGGC 61.409 72.222 0.00 0.00 0.00 5.19
429 444 4.270325 GTGTAAACCTGATCATTAGTCGGC 59.730 45.833 0.00 0.00 0.00 5.54
447 462 1.693640 CCCAGGCCAGATTTCAGGT 59.306 57.895 5.01 0.00 0.00 4.00
462 477 1.075374 TCAGGTTGGGCTTGCATAAGT 59.925 47.619 0.00 0.00 36.27 2.24
469 484 0.817654 GGCTTGCATAAGTCCAACCC 59.182 55.000 0.00 0.00 36.27 4.11
476 491 3.181434 TGCATAAGTCCAACCCTCAAACT 60.181 43.478 0.00 0.00 0.00 2.66
482 497 2.034685 GTCCAACCCTCAAACTTCAAGC 59.965 50.000 0.00 0.00 0.00 4.01
488 503 1.543429 CCTCAAACTTCAAGCCCGAGT 60.543 52.381 0.00 0.00 0.00 4.18
493 508 1.004918 CTTCAAGCCCGAGTCCGTT 60.005 57.895 0.00 0.00 0.00 4.44
494 509 1.291877 CTTCAAGCCCGAGTCCGTTG 61.292 60.000 0.00 0.00 0.00 4.10
502 517 1.300620 CGAGTCCGTTGTGAAGCCA 60.301 57.895 0.00 0.00 0.00 4.75
503 518 1.557443 CGAGTCCGTTGTGAAGCCAC 61.557 60.000 0.00 0.00 43.46 5.01
519 557 6.420903 GTGAAGCCACAAAAATAGTCCTTTTC 59.579 38.462 0.00 0.00 42.72 2.29
526 564 6.760770 CACAAAAATAGTCCTTTTCAAAGCCA 59.239 34.615 0.00 0.00 34.69 4.75
529 567 5.728637 AATAGTCCTTTTCAAAGCCAAGG 57.271 39.130 0.00 0.00 38.83 3.61
585 651 2.347490 GGCCCGAAGCTTGAGACA 59.653 61.111 2.10 0.00 43.05 3.41
587 653 1.743252 GCCCGAAGCTTGAGACAGG 60.743 63.158 2.10 0.00 38.99 4.00
588 654 1.674057 CCCGAAGCTTGAGACAGGT 59.326 57.895 2.10 0.00 0.00 4.00
592 658 1.270305 CGAAGCTTGAGACAGGTCCAA 60.270 52.381 2.10 0.35 0.00 3.53
594 660 2.262423 AGCTTGAGACAGGTCCAAAC 57.738 50.000 0.00 0.00 0.00 2.93
595 661 1.490490 AGCTTGAGACAGGTCCAAACA 59.510 47.619 0.00 0.00 0.00 2.83
597 663 2.746472 GCTTGAGACAGGTCCAAACAGT 60.746 50.000 0.00 0.00 0.00 3.55
598 664 2.910688 TGAGACAGGTCCAAACAGTC 57.089 50.000 0.00 0.00 34.17 3.51
600 666 2.771943 TGAGACAGGTCCAAACAGTCTT 59.228 45.455 0.00 0.00 40.35 3.01
601 667 3.964688 TGAGACAGGTCCAAACAGTCTTA 59.035 43.478 0.00 0.00 40.35 2.10
608 674 2.930682 GTCCAAACAGTCTTATCGGCTC 59.069 50.000 0.00 0.00 0.00 4.70
609 675 2.832129 TCCAAACAGTCTTATCGGCTCT 59.168 45.455 0.00 0.00 0.00 4.09
610 676 3.260884 TCCAAACAGTCTTATCGGCTCTT 59.739 43.478 0.00 0.00 0.00 2.85
611 677 4.003648 CCAAACAGTCTTATCGGCTCTTT 58.996 43.478 0.00 0.00 0.00 2.52
612 678 4.093556 CCAAACAGTCTTATCGGCTCTTTC 59.906 45.833 0.00 0.00 0.00 2.62
613 679 3.528597 ACAGTCTTATCGGCTCTTTCC 57.471 47.619 0.00 0.00 0.00 3.13
620 686 2.107141 CGGCTCTTTCCGGGCTAG 59.893 66.667 0.00 0.00 45.38 3.42
621 687 2.423898 CGGCTCTTTCCGGGCTAGA 61.424 63.158 0.00 0.95 45.38 2.43
624 690 0.103390 GCTCTTTCCGGGCTAGAGAC 59.897 60.000 23.75 14.87 38.09 3.36
626 692 0.040646 TCTTTCCGGGCTAGAGACCA 59.959 55.000 0.00 0.00 46.09 4.02
627 693 0.461961 CTTTCCGGGCTAGAGACCAG 59.538 60.000 0.00 0.00 46.09 4.00
628 694 1.614241 TTTCCGGGCTAGAGACCAGC 61.614 60.000 0.00 0.00 46.09 4.85
629 695 2.443016 CCGGGCTAGAGACCAGCT 60.443 66.667 1.49 0.00 46.09 4.24
630 696 2.494530 CCGGGCTAGAGACCAGCTC 61.495 68.421 1.49 0.00 46.09 4.09
638 704 3.324207 GAGACCAGCTCGGGTTTTT 57.676 52.632 0.00 0.00 42.53 1.94
649 715 2.913578 GGTTTTTCGGCCCGGGTT 60.914 61.111 24.63 0.00 0.00 4.11
650 716 2.646719 GTTTTTCGGCCCGGGTTC 59.353 61.111 24.63 14.17 0.00 3.62
651 717 1.900016 GTTTTTCGGCCCGGGTTCT 60.900 57.895 24.63 0.00 0.00 3.01
653 719 3.556298 TTTTCGGCCCGGGTTCTCC 62.556 63.158 24.63 14.00 0.00 3.71
680 778 4.889807 TGGGTTCTCCAAACACGG 57.110 55.556 0.00 0.00 43.84 4.94
681 779 1.149627 TGGGTTCTCCAAACACGGG 59.850 57.895 0.00 0.00 43.84 5.28
682 780 1.149854 GGGTTCTCCAAACACGGGT 59.850 57.895 0.00 0.00 35.00 5.28
683 781 0.397564 GGGTTCTCCAAACACGGGTA 59.602 55.000 0.00 0.00 35.00 3.69
693 791 1.345063 AACACGGGTAAGCTAGGTGT 58.655 50.000 0.00 0.00 43.12 4.16
702 800 5.250982 GGGTAAGCTAGGTGTGTGTTAATT 58.749 41.667 0.00 0.00 0.00 1.40
706 804 4.833390 AGCTAGGTGTGTGTTAATTCCTC 58.167 43.478 0.00 0.00 0.00 3.71
743 1965 2.378547 TGGGTGACTAATGCCTTCCTTT 59.621 45.455 0.00 0.00 0.00 3.11
744 1966 3.017442 GGGTGACTAATGCCTTCCTTTC 58.983 50.000 0.00 0.00 0.00 2.62
745 1967 3.308473 GGGTGACTAATGCCTTCCTTTCT 60.308 47.826 0.00 0.00 0.00 2.52
746 1968 4.336280 GGTGACTAATGCCTTCCTTTCTT 58.664 43.478 0.00 0.00 0.00 2.52
747 1969 4.396478 GGTGACTAATGCCTTCCTTTCTTC 59.604 45.833 0.00 0.00 0.00 2.87
748 1970 4.396478 GTGACTAATGCCTTCCTTTCTTCC 59.604 45.833 0.00 0.00 0.00 3.46
771 1993 1.052617 GGAAGGGGTAGAGATGCTCC 58.947 60.000 0.00 0.00 0.00 4.70
776 1998 1.552792 GGGGTAGAGATGCTCCTATGC 59.447 57.143 0.00 0.00 0.00 3.14
778 2000 1.203523 GGTAGAGATGCTCCTATGCGG 59.796 57.143 0.00 0.00 35.36 5.69
811 2033 1.214367 GCGTTCTTGGAACGTGAGAA 58.786 50.000 26.00 0.00 44.69 2.87
814 2036 3.486209 GCGTTCTTGGAACGTGAGAAAAA 60.486 43.478 26.00 0.00 44.69 1.94
816 2038 4.348656 GTTCTTGGAACGTGAGAAAAACC 58.651 43.478 0.00 0.00 31.79 3.27
817 2039 3.881220 TCTTGGAACGTGAGAAAAACCT 58.119 40.909 0.00 0.00 0.00 3.50
818 2040 3.875134 TCTTGGAACGTGAGAAAAACCTC 59.125 43.478 0.00 0.00 0.00 3.85
849 2071 1.573932 TGAGAAACACATTGCCGCG 59.426 52.632 0.00 0.00 0.00 6.46
850 2072 0.882484 TGAGAAACACATTGCCGCGA 60.882 50.000 8.23 0.00 0.00 5.87
851 2073 0.237235 GAGAAACACATTGCCGCGAA 59.763 50.000 8.23 0.00 0.00 4.70
852 2074 0.881118 AGAAACACATTGCCGCGAAT 59.119 45.000 8.23 0.00 0.00 3.34
853 2075 1.269448 AGAAACACATTGCCGCGAATT 59.731 42.857 8.23 0.00 0.00 2.17
854 2076 2.058057 GAAACACATTGCCGCGAATTT 58.942 42.857 8.23 0.00 0.00 1.82
855 2077 1.696988 AACACATTGCCGCGAATTTC 58.303 45.000 8.23 0.00 0.00 2.17
856 2078 0.109319 ACACATTGCCGCGAATTTCC 60.109 50.000 8.23 0.00 0.00 3.13
857 2079 0.171007 CACATTGCCGCGAATTTCCT 59.829 50.000 8.23 0.00 0.00 3.36
858 2080 0.887933 ACATTGCCGCGAATTTCCTT 59.112 45.000 8.23 0.00 0.00 3.36
859 2081 1.272212 ACATTGCCGCGAATTTCCTTT 59.728 42.857 8.23 0.00 0.00 3.11
860 2082 2.288763 ACATTGCCGCGAATTTCCTTTT 60.289 40.909 8.23 0.00 0.00 2.27
892 2114 3.129287 ACCTTTGATGCGAATTAAGCTGG 59.871 43.478 6.89 0.00 35.28 4.85
902 2124 0.890683 ATTAAGCTGGTGCCAAGTGC 59.109 50.000 0.00 0.00 40.80 4.40
904 2126 4.982701 AGCTGGTGCCAAGTGCCC 62.983 66.667 0.00 0.00 40.80 5.36
905 2127 4.982701 GCTGGTGCCAAGTGCCCT 62.983 66.667 0.00 0.00 40.16 5.19
906 2128 2.674380 CTGGTGCCAAGTGCCCTC 60.674 66.667 0.00 0.00 40.16 4.30
909 2131 4.643387 GTGCCAAGTGCCCTCCGT 62.643 66.667 0.00 0.00 40.16 4.69
910 2132 3.884774 TGCCAAGTGCCCTCCGTT 61.885 61.111 0.00 0.00 40.16 4.44
913 2135 1.228124 CCAAGTGCCCTCCGTTTCA 60.228 57.895 0.00 0.00 0.00 2.69
915 2137 1.600916 AAGTGCCCTCCGTTTCAGC 60.601 57.895 0.00 0.00 0.00 4.26
916 2138 3.423154 GTGCCCTCCGTTTCAGCG 61.423 66.667 0.00 0.00 0.00 5.18
917 2139 3.936203 TGCCCTCCGTTTCAGCGT 61.936 61.111 0.00 0.00 0.00 5.07
918 2140 3.119096 GCCCTCCGTTTCAGCGTC 61.119 66.667 0.00 0.00 0.00 5.19
920 2142 1.004918 CCCTCCGTTTCAGCGTCTT 60.005 57.895 0.00 0.00 0.00 3.01
921 2143 1.291877 CCCTCCGTTTCAGCGTCTTG 61.292 60.000 0.00 0.00 0.00 3.02
923 2145 1.901650 CTCCGTTTCAGCGTCTTGGC 61.902 60.000 0.00 0.00 0.00 4.52
924 2146 2.250939 CCGTTTCAGCGTCTTGGCA 61.251 57.895 0.00 0.00 34.64 4.92
925 2147 1.205064 CGTTTCAGCGTCTTGGCAG 59.795 57.895 0.00 0.00 34.64 4.85
927 2149 1.525765 TTTCAGCGTCTTGGCAGCA 60.526 52.632 0.00 0.00 34.64 4.41
928 2150 1.785041 TTTCAGCGTCTTGGCAGCAC 61.785 55.000 0.00 0.00 34.64 4.40
929 2151 4.081030 CAGCGTCTTGGCAGCACG 62.081 66.667 14.06 14.06 36.60 5.34
957 2185 1.265365 GCCTGTCAAGTCAAGTCAAGC 59.735 52.381 0.00 0.00 0.00 4.01
982 2215 4.415332 CCGTCCCGTCTCACACCG 62.415 72.222 0.00 0.00 0.00 4.94
1024 2261 1.065126 CCATCCCTCCTCCACACTTTC 60.065 57.143 0.00 0.00 0.00 2.62
1050 2287 1.062294 CTCGACGGTGCTCTACAGTAC 59.938 57.143 0.00 0.00 37.84 2.73
1053 2290 1.811359 GACGGTGCTCTACAGTACAGT 59.189 52.381 0.00 0.00 44.21 3.55
1054 2291 3.005554 GACGGTGCTCTACAGTACAGTA 58.994 50.000 0.00 0.00 42.22 2.74
1055 2292 2.746362 ACGGTGCTCTACAGTACAGTAC 59.254 50.000 2.05 2.05 40.81 2.73
1056 2293 2.745821 CGGTGCTCTACAGTACAGTACA 59.254 50.000 13.37 0.00 36.99 2.90
1057 2294 3.181509 CGGTGCTCTACAGTACAGTACAG 60.182 52.174 13.37 7.52 36.99 2.74
1058 2295 3.427773 GGTGCTCTACAGTACAGTACAGC 60.428 52.174 15.65 15.65 36.99 4.40
1091 2541 0.612229 CTTCCTGCTGCCTTCTCTCA 59.388 55.000 0.00 0.00 0.00 3.27
1120 2573 1.340893 ACACATCCAATTCCATCGCCA 60.341 47.619 0.00 0.00 0.00 5.69
1121 2574 1.335810 CACATCCAATTCCATCGCCAG 59.664 52.381 0.00 0.00 0.00 4.85
1124 2577 2.025156 CAATTCCATCGCCAGCGC 59.975 61.111 7.27 0.00 39.59 5.92
1144 2597 1.006805 GTCCATGATCCTCTCGGCG 60.007 63.158 0.00 0.00 0.00 6.46
1239 2698 2.609427 TCTGAAATGGGAGCAGATCG 57.391 50.000 0.00 0.00 34.02 3.69
1243 2705 2.208431 GAAATGGGAGCAGATCGTCAG 58.792 52.381 0.00 0.00 0.00 3.51
1251 2713 0.864455 GCAGATCGTCAGGCTTATGC 59.136 55.000 0.00 0.00 38.76 3.14
1276 2738 3.522553 CTTGGACCAGGTAACGAAGATC 58.477 50.000 0.00 0.00 46.39 2.75
1323 2797 3.919216 TCTACTCTGCTGCAAGTTTCTC 58.081 45.455 17.93 0.00 35.30 2.87
1328 2802 3.813443 TCTGCTGCAAGTTTCTCTTCTT 58.187 40.909 3.02 0.00 35.30 2.52
1329 2803 3.812053 TCTGCTGCAAGTTTCTCTTCTTC 59.188 43.478 3.02 0.00 35.30 2.87
1330 2804 3.813443 TGCTGCAAGTTTCTCTTCTTCT 58.187 40.909 0.00 0.00 35.30 2.85
1331 2805 3.812053 TGCTGCAAGTTTCTCTTCTTCTC 59.188 43.478 0.00 0.00 35.30 2.87
1333 2807 3.744660 TGCAAGTTTCTCTTCTTCTCCC 58.255 45.455 0.00 0.00 33.63 4.30
1334 2808 3.392616 TGCAAGTTTCTCTTCTTCTCCCT 59.607 43.478 0.00 0.00 33.63 4.20
1335 2809 4.593206 TGCAAGTTTCTCTTCTTCTCCCTA 59.407 41.667 0.00 0.00 33.63 3.53
1336 2810 5.249393 TGCAAGTTTCTCTTCTTCTCCCTAT 59.751 40.000 0.00 0.00 33.63 2.57
1337 2811 5.584251 GCAAGTTTCTCTTCTTCTCCCTATG 59.416 44.000 0.00 0.00 33.63 2.23
1338 2812 5.948742 AGTTTCTCTTCTTCTCCCTATGG 57.051 43.478 0.00 0.00 0.00 2.74
1339 2813 5.346270 AGTTTCTCTTCTTCTCCCTATGGT 58.654 41.667 0.00 0.00 0.00 3.55
1341 2815 6.960542 AGTTTCTCTTCTTCTCCCTATGGTAA 59.039 38.462 0.00 0.00 0.00 2.85
1342 2816 7.458170 AGTTTCTCTTCTTCTCCCTATGGTAAA 59.542 37.037 0.00 0.00 0.00 2.01
1344 2818 6.503944 TCTCTTCTTCTCCCTATGGTAAACT 58.496 40.000 0.00 0.00 0.00 2.66
1345 2819 7.649715 TCTCTTCTTCTCCCTATGGTAAACTA 58.350 38.462 0.00 0.00 0.00 2.24
1346 2820 8.120538 TCTCTTCTTCTCCCTATGGTAAACTAA 58.879 37.037 0.00 0.00 0.00 2.24
1347 2821 8.855804 TCTTCTTCTCCCTATGGTAAACTAAT 57.144 34.615 0.00 0.00 0.00 1.73
1375 2849 8.588290 AAGAGTGTTTAGATCAGATCACTACT 57.412 34.615 13.14 8.84 36.49 2.57
1376 2850 8.588290 AGAGTGTTTAGATCAGATCACTACTT 57.412 34.615 13.14 0.00 36.49 2.24
1377 2851 9.030452 AGAGTGTTTAGATCAGATCACTACTTT 57.970 33.333 13.14 2.78 36.49 2.66
1412 2886 9.436957 AAATGCTATTATATCAGTTTACGGAGG 57.563 33.333 0.00 0.00 0.00 4.30
1413 2887 6.931838 TGCTATTATATCAGTTTACGGAGGG 58.068 40.000 0.00 0.00 0.00 4.30
1414 2888 6.722590 TGCTATTATATCAGTTTACGGAGGGA 59.277 38.462 0.00 0.00 0.00 4.20
1415 2889 7.093902 TGCTATTATATCAGTTTACGGAGGGAG 60.094 40.741 0.00 0.00 0.00 4.30
1416 2890 7.093858 GCTATTATATCAGTTTACGGAGGGAGT 60.094 40.741 0.00 0.00 0.00 3.85
1417 2891 9.458727 CTATTATATCAGTTTACGGAGGGAGTA 57.541 37.037 0.00 0.00 0.00 2.59
1418 2892 7.516198 TTATATCAGTTTACGGAGGGAGTAC 57.484 40.000 0.00 0.00 0.00 2.73
1419 2893 3.159213 TCAGTTTACGGAGGGAGTACA 57.841 47.619 0.00 0.00 0.00 2.90
1420 2894 3.705051 TCAGTTTACGGAGGGAGTACAT 58.295 45.455 0.00 0.00 0.00 2.29
1421 2895 4.091549 TCAGTTTACGGAGGGAGTACATT 58.908 43.478 0.00 0.00 0.00 2.71
1422 2896 5.263599 TCAGTTTACGGAGGGAGTACATTA 58.736 41.667 0.00 0.00 0.00 1.90
1423 2897 5.126061 TCAGTTTACGGAGGGAGTACATTAC 59.874 44.000 0.00 0.00 0.00 1.89
1433 2907 6.931840 GGAGGGAGTACATTACAATCTGATTC 59.068 42.308 0.00 0.00 0.00 2.52
1437 2911 7.716998 GGGAGTACATTACAATCTGATTCACAT 59.283 37.037 0.00 0.00 0.00 3.21
1448 2922 3.935203 TCTGATTCACATTCTCTTTCGGC 59.065 43.478 0.00 0.00 0.00 5.54
1451 2925 1.059369 CACATTCTCTTTCGGCGCG 59.941 57.895 0.00 0.00 0.00 6.86
1582 3073 2.578021 AGGTGCTCTCTCTCTCTCTCTT 59.422 50.000 0.00 0.00 0.00 2.85
1583 3074 2.945668 GGTGCTCTCTCTCTCTCTCTTC 59.054 54.545 0.00 0.00 0.00 2.87
1584 3075 3.609853 GTGCTCTCTCTCTCTCTCTTCA 58.390 50.000 0.00 0.00 0.00 3.02
1585 3076 3.624861 GTGCTCTCTCTCTCTCTCTTCAG 59.375 52.174 0.00 0.00 0.00 3.02
1586 3077 3.519107 TGCTCTCTCTCTCTCTCTTCAGA 59.481 47.826 0.00 0.00 0.00 3.27
1587 3078 3.873952 GCTCTCTCTCTCTCTCTTCAGAC 59.126 52.174 0.00 0.00 0.00 3.51
1588 3079 4.383552 GCTCTCTCTCTCTCTCTTCAGACT 60.384 50.000 0.00 0.00 0.00 3.24
1590 3081 6.126863 TCTCTCTCTCTCTCTTCAGACTTT 57.873 41.667 0.00 0.00 0.00 2.66
1594 3085 7.458397 TCTCTCTCTCTCTTCAGACTTTACTT 58.542 38.462 0.00 0.00 0.00 2.24
1595 3086 8.598916 TCTCTCTCTCTCTTCAGACTTTACTTA 58.401 37.037 0.00 0.00 0.00 2.24
1597 3088 7.608761 TCTCTCTCTCTTCAGACTTTACTTACC 59.391 40.741 0.00 0.00 0.00 2.85
1599 3090 7.392113 TCTCTCTCTTCAGACTTTACTTACCTG 59.608 40.741 0.00 0.00 0.00 4.00
1601 3092 7.175293 TCTCTCTTCAGACTTTACTTACCTGTC 59.825 40.741 0.00 0.00 0.00 3.51
1602 3093 7.005296 TCTCTTCAGACTTTACTTACCTGTCT 58.995 38.462 0.00 0.00 38.36 3.41
1608 3099 7.598759 AGACTTTACTTACCTGTCTGAAGAA 57.401 36.000 0.00 0.00 36.74 2.52
1612 3103 6.742559 TTACTTACCTGTCTGAAGAACCTT 57.257 37.500 0.00 0.00 0.00 3.50
1613 3104 7.844493 TTACTTACCTGTCTGAAGAACCTTA 57.156 36.000 0.00 0.00 0.00 2.69
1614 3105 6.347859 ACTTACCTGTCTGAAGAACCTTAG 57.652 41.667 0.00 0.00 0.00 2.18
1615 3106 3.686916 ACCTGTCTGAAGAACCTTAGC 57.313 47.619 0.00 0.00 0.00 3.09
1618 3109 1.628846 TGTCTGAAGAACCTTAGCCCC 59.371 52.381 0.00 0.00 0.00 5.80
1636 3127 5.262009 AGCCCCTTTTCTTCAGTTATTACC 58.738 41.667 0.00 0.00 0.00 2.85
1645 3143 8.556213 TTTCTTCAGTTATTACCACCATACAC 57.444 34.615 0.00 0.00 0.00 2.90
1676 3174 7.729124 AGTTCTGAATTTTTCATGGATGGAT 57.271 32.000 0.00 0.00 39.30 3.41
1677 3175 7.553334 AGTTCTGAATTTTTCATGGATGGATG 58.447 34.615 0.00 0.00 39.30 3.51
1678 3176 5.909477 TCTGAATTTTTCATGGATGGATGC 58.091 37.500 0.00 0.00 39.30 3.91
1679 3177 4.684877 TGAATTTTTCATGGATGGATGCG 58.315 39.130 0.00 0.00 34.08 4.73
1680 3178 4.160065 TGAATTTTTCATGGATGGATGCGT 59.840 37.500 0.00 0.00 34.08 5.24
1698 3200 0.804989 GTGAATGAACAGGGAAGCGG 59.195 55.000 0.00 0.00 0.00 5.52
1850 3352 5.392767 GACAGTAAGTCACTCTGGAATGA 57.607 43.478 0.00 0.00 46.77 2.57
1856 3358 2.012673 GTCACTCTGGAATGATGGTGC 58.987 52.381 0.00 0.00 0.00 5.01
1857 3359 1.629861 TCACTCTGGAATGATGGTGCA 59.370 47.619 0.00 0.00 0.00 4.57
1894 3407 7.497249 GTGATGAACTAACTGGCTTATGATCTT 59.503 37.037 0.00 0.00 0.00 2.40
1952 3470 1.956620 GCGTGTTCAGCTTCTACGGC 61.957 60.000 10.37 2.22 35.49 5.68
2032 3550 1.433879 CCGTTCAGCTCTCCGGTAG 59.566 63.158 0.00 1.18 35.78 3.18
2052 3570 2.950309 AGCATCATCTTGCCACTGATTC 59.050 45.455 0.00 0.00 43.83 2.52
2109 3643 3.949754 TCATGATGGTTTCTGATTCAGGC 59.050 43.478 13.59 4.86 31.51 4.85
2118 3652 0.533755 CTGATTCAGGCCCGACATCC 60.534 60.000 0.00 0.00 0.00 3.51
2119 3653 0.982852 TGATTCAGGCCCGACATCCT 60.983 55.000 0.00 0.00 0.00 3.24
2215 3749 2.047274 ACGGGCAGGTGATCAACG 60.047 61.111 4.80 1.54 0.00 4.10
2233 3767 1.202359 ACGGCCATTTTTGTGTGTGTC 60.202 47.619 2.24 0.00 0.00 3.67
2244 3779 3.194005 TGTGTGTGTCCTCTTTTCTCC 57.806 47.619 0.00 0.00 0.00 3.71
2381 3916 0.597637 CCCCGGACGAATCAAGATCG 60.598 60.000 0.73 0.00 45.47 3.69
2439 3974 5.208890 TCATTCATGCCAGGTACTAGTAGT 58.791 41.667 8.14 8.14 36.02 2.73
2440 3975 5.661312 TCATTCATGCCAGGTACTAGTAGTT 59.339 40.000 8.40 0.00 36.02 2.24
2441 3976 5.339008 TTCATGCCAGGTACTAGTAGTTG 57.661 43.478 8.40 4.83 36.02 3.16
2442 3977 4.606210 TCATGCCAGGTACTAGTAGTTGA 58.394 43.478 8.40 0.55 36.02 3.18
2466 4001 4.191544 TGATACAGCTGAATGCCAAGTAC 58.808 43.478 23.35 0.00 44.23 2.73
2480 4017 3.146847 CCAAGTACCTGTCTCCAAAACC 58.853 50.000 0.00 0.00 0.00 3.27
2498 4035 2.857592 CCTGACTGGTTTGCATATGC 57.142 50.000 21.09 21.09 42.50 3.14
2501 4038 2.357009 CTGACTGGTTTGCATATGCTCC 59.643 50.000 27.13 23.75 42.66 4.70
2502 4039 2.290832 TGACTGGTTTGCATATGCTCCA 60.291 45.455 27.13 26.29 42.66 3.86
2504 4041 2.025981 ACTGGTTTGCATATGCTCCAGA 60.026 45.455 39.78 21.05 46.52 3.86
2515 4057 3.784511 ATGCTCCAGAGACATTATGGG 57.215 47.619 0.00 0.00 34.71 4.00
2690 4233 0.959553 GAGGGCATGCTCATTCATGG 59.040 55.000 22.09 0.00 42.97 3.66
2699 4242 1.337071 GCTCATTCATGGCATGTCCTG 59.663 52.381 25.62 19.74 35.26 3.86
2877 4420 0.978146 AGCCAGCGGATCAGGTACTT 60.978 55.000 0.00 0.00 34.60 2.24
2885 4428 1.661341 GATCAGGTACTTGCCAGCAG 58.339 55.000 0.00 0.00 34.60 4.24
2886 4429 1.208052 GATCAGGTACTTGCCAGCAGA 59.792 52.381 0.00 0.00 34.60 4.26
2909 4468 9.393512 CAGATCAGAGAGAAGGTTGATTTATTT 57.606 33.333 0.00 0.00 30.85 1.40
2914 4473 8.663911 CAGAGAGAAGGTTGATTTATTTGTCTC 58.336 37.037 2.56 2.56 38.02 3.36
2939 4498 9.838339 TCAGAAGTTTACTCTCTTTTCTCAATT 57.162 29.630 0.00 0.00 0.00 2.32
2973 4532 0.538584 TTCAGTGATCTGGCTGCGAT 59.461 50.000 0.00 0.00 41.59 4.58
3019 4578 2.109517 CTCCATCCTGAGCATCCGGG 62.110 65.000 0.00 0.00 40.28 5.73
3141 4700 7.552687 TGTACACTTCAGAACAACTCATTTTCT 59.447 33.333 0.00 0.00 0.00 2.52
3142 4701 7.396540 ACACTTCAGAACAACTCATTTTCTT 57.603 32.000 0.00 0.00 0.00 2.52
3143 4702 7.475840 ACACTTCAGAACAACTCATTTTCTTC 58.524 34.615 0.00 0.00 0.00 2.87
3149 4708 3.565307 ACAACTCATTTTCTTCCAGCCA 58.435 40.909 0.00 0.00 0.00 4.75
3153 4712 3.319122 ACTCATTTTCTTCCAGCCAACAC 59.681 43.478 0.00 0.00 0.00 3.32
3241 4804 6.886459 AGTTGGCAAGTCTTCATATGTTACAT 59.114 34.615 0.00 2.58 0.00 2.29
3293 4856 5.381174 TCACCTGAATCAGCAAAAATGAG 57.619 39.130 4.40 0.00 0.00 2.90
3336 4899 7.283329 AGAAATCCAGGGTAAAGTGATATGTC 58.717 38.462 0.00 0.00 0.00 3.06
3337 4900 6.575244 AATCCAGGGTAAAGTGATATGTCA 57.425 37.500 0.00 0.00 0.00 3.58
3341 4904 7.235079 TCCAGGGTAAAGTGATATGTCAAAAA 58.765 34.615 0.00 0.00 35.80 1.94
3469 5034 3.616379 ACAAACAAGCACGGACAAATTTG 59.384 39.130 16.67 16.67 33.17 2.32
3695 5262 4.600055 TGCCATGGCCAGCACACA 62.600 61.111 33.44 9.85 41.09 3.72
3815 5382 0.389426 TGTCGGCGAGCTTTAAGGAC 60.389 55.000 11.20 0.00 0.00 3.85
3824 5391 3.367910 CGAGCTTTAAGGACTTCTCTGCT 60.368 47.826 0.00 0.00 0.00 4.24
3830 5397 1.181741 AGGACTTCTCTGCTGCGTCA 61.182 55.000 0.00 0.00 0.00 4.35
3984 5557 3.773667 TCAGTTCAGCTTCTCATGGATCT 59.226 43.478 0.00 0.00 0.00 2.75
4020 5593 1.593196 CAACCAGAAAGGACGCTTCA 58.407 50.000 0.00 0.00 41.22 3.02
4021 5594 1.946768 CAACCAGAAAGGACGCTTCAA 59.053 47.619 0.00 0.00 41.22 2.69
4025 5598 0.765510 AGAAAGGACGCTTCAACCCT 59.234 50.000 0.00 0.00 0.00 4.34
4028 5601 3.009143 AGAAAGGACGCTTCAACCCTATT 59.991 43.478 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.108804 CTTGGCCATGAGCAAAGCAG 60.109 55.000 13.33 0.00 45.52 4.24
53 54 1.977544 CACTCCTTCCCGTCGTCCT 60.978 63.158 0.00 0.00 0.00 3.85
56 57 2.623915 CGACACTCCTTCCCGTCGT 61.624 63.158 0.00 0.00 44.61 4.34
57 58 2.178521 CGACACTCCTTCCCGTCG 59.821 66.667 0.00 0.00 44.34 5.12
87 88 3.597728 CTACGGGCTCTCCTCGCC 61.598 72.222 0.00 0.00 46.83 5.54
99 100 2.246993 TTTTGCGGCGAATGCTACGG 62.247 55.000 12.98 0.00 42.25 4.02
100 101 1.125847 GTTTTGCGGCGAATGCTACG 61.126 55.000 12.98 0.00 42.25 3.51
111 112 0.313987 GGTCTTTCCCAGTTTTGCGG 59.686 55.000 0.00 0.00 0.00 5.69
114 115 6.041523 TCCTTTTATGGTCTTTCCCAGTTTTG 59.958 38.462 0.00 0.00 38.07 2.44
119 121 5.570320 TCTTCCTTTTATGGTCTTTCCCAG 58.430 41.667 0.00 0.00 38.07 4.45
147 149 1.656652 CGGCGAGATTCTGATGGTTT 58.343 50.000 0.00 0.00 0.00 3.27
148 150 0.179073 CCGGCGAGATTCTGATGGTT 60.179 55.000 9.30 0.00 0.00 3.67
149 151 1.043116 TCCGGCGAGATTCTGATGGT 61.043 55.000 9.30 0.00 0.00 3.55
150 152 0.319383 CTCCGGCGAGATTCTGATGG 60.319 60.000 9.30 0.00 38.52 3.51
162 164 4.194720 CCCGTCTCTTCTCCGGCG 62.195 72.222 0.00 0.00 40.38 6.46
217 219 2.686816 CGGTCATTGTTGTCCGCCC 61.687 63.158 0.00 0.00 45.12 6.13
229 231 2.582436 CCGGTTAGGCACGGTCAT 59.418 61.111 0.00 0.00 44.85 3.06
234 236 3.578515 AACGACCCGGTTAGGCACG 62.579 63.158 0.00 0.00 40.70 5.34
240 242 2.037511 AGAAATGTGAACGACCCGGTTA 59.962 45.455 0.00 0.00 0.00 2.85
243 245 1.519408 AAGAAATGTGAACGACCCGG 58.481 50.000 0.00 0.00 0.00 5.73
247 249 9.968620 CGTTAAAAATAAAGAAATGTGAACGAC 57.031 29.630 0.00 0.00 37.54 4.34
256 258 9.406828 GGCAACTCTCGTTAAAAATAAAGAAAT 57.593 29.630 0.00 0.00 0.00 2.17
324 339 7.676947 TCCCGGAACCATTAATATAGAGAAAG 58.323 38.462 0.73 0.00 0.00 2.62
331 346 5.749629 GCCCTTTCCCGGAACCATTAATATA 60.750 44.000 0.73 0.00 0.00 0.86
333 348 3.688991 GCCCTTTCCCGGAACCATTAATA 60.689 47.826 0.73 0.00 0.00 0.98
335 350 1.617533 GCCCTTTCCCGGAACCATTAA 60.618 52.381 0.73 0.00 0.00 1.40
362 377 2.645797 CTCCACCCACCCTACCTAAAAA 59.354 50.000 0.00 0.00 0.00 1.94
363 378 2.271777 CTCCACCCACCCTACCTAAAA 58.728 52.381 0.00 0.00 0.00 1.52
364 379 1.556238 CCTCCACCCACCCTACCTAAA 60.556 57.143 0.00 0.00 0.00 1.85
365 380 0.043637 CCTCCACCCACCCTACCTAA 59.956 60.000 0.00 0.00 0.00 2.69
366 381 1.707827 CCTCCACCCACCCTACCTA 59.292 63.158 0.00 0.00 0.00 3.08
367 382 2.454941 CCTCCACCCACCCTACCT 59.545 66.667 0.00 0.00 0.00 3.08
368 383 2.691252 CCCTCCACCCACCCTACC 60.691 72.222 0.00 0.00 0.00 3.18
369 384 3.408853 GCCCTCCACCCACCCTAC 61.409 72.222 0.00 0.00 0.00 3.18
408 423 3.808174 GGCCGACTAATGATCAGGTTTAC 59.192 47.826 0.09 0.00 0.00 2.01
413 428 0.758734 TGGGCCGACTAATGATCAGG 59.241 55.000 0.09 0.00 0.00 3.86
429 444 0.040204 AACCTGAAATCTGGCCTGGG 59.960 55.000 10.07 4.38 38.38 4.45
443 458 1.474077 GACTTATGCAAGCCCAACCTG 59.526 52.381 0.00 0.00 34.94 4.00
444 459 1.616994 GGACTTATGCAAGCCCAACCT 60.617 52.381 0.00 0.00 34.57 3.50
462 477 2.306847 GCTTGAAGTTTGAGGGTTGGA 58.693 47.619 0.00 0.00 0.00 3.53
465 480 1.704641 GGGCTTGAAGTTTGAGGGTT 58.295 50.000 0.00 0.00 0.00 4.11
469 484 1.801178 GACTCGGGCTTGAAGTTTGAG 59.199 52.381 7.73 7.73 0.00 3.02
476 491 1.301401 CAACGGACTCGGGCTTGAA 60.301 57.895 0.00 0.00 41.39 2.69
482 497 2.027625 GCTTCACAACGGACTCGGG 61.028 63.158 0.00 0.00 41.39 5.14
494 509 5.453567 AAGGACTATTTTTGTGGCTTCAC 57.546 39.130 0.00 0.00 41.56 3.18
502 517 6.883744 TGGCTTTGAAAAGGACTATTTTTGT 58.116 32.000 5.02 0.00 36.53 2.83
503 518 7.041848 CCTTGGCTTTGAAAAGGACTATTTTTG 60.042 37.037 5.02 0.00 42.65 2.44
508 546 3.511540 GCCTTGGCTTTGAAAAGGACTAT 59.488 43.478 4.11 0.00 42.65 2.12
526 564 0.682209 CTTGCATACAGGCAGGCCTT 60.682 55.000 10.79 5.25 45.70 4.35
585 651 2.354805 GCCGATAAGACTGTTTGGACCT 60.355 50.000 0.00 0.00 0.00 3.85
587 653 2.930682 GAGCCGATAAGACTGTTTGGAC 59.069 50.000 0.00 0.00 0.00 4.02
588 654 2.832129 AGAGCCGATAAGACTGTTTGGA 59.168 45.455 0.00 0.00 0.00 3.53
592 658 3.863041 GGAAAGAGCCGATAAGACTGTT 58.137 45.455 0.00 0.00 0.00 3.16
608 674 0.461961 CTGGTCTCTAGCCCGGAAAG 59.538 60.000 0.73 0.00 0.00 2.62
609 675 1.614241 GCTGGTCTCTAGCCCGGAAA 61.614 60.000 0.73 0.00 35.15 3.13
610 676 2.058595 GCTGGTCTCTAGCCCGGAA 61.059 63.158 0.73 0.00 35.15 4.30
611 677 2.442272 GCTGGTCTCTAGCCCGGA 60.442 66.667 0.73 0.00 35.15 5.14
612 678 2.443016 AGCTGGTCTCTAGCCCGG 60.443 66.667 0.00 0.00 42.07 5.73
613 679 2.840066 CGAGCTGGTCTCTAGCCCG 61.840 68.421 5.23 0.00 42.07 6.13
614 680 2.494530 CCGAGCTGGTCTCTAGCCC 61.495 68.421 5.23 0.00 42.07 5.19
616 682 1.324005 AACCCGAGCTGGTCTCTAGC 61.324 60.000 5.23 0.00 37.76 3.42
617 683 1.187087 AAACCCGAGCTGGTCTCTAG 58.813 55.000 5.23 0.00 37.76 2.43
619 685 0.765510 AAAAACCCGAGCTGGTCTCT 59.234 50.000 5.23 0.00 37.76 3.10
620 686 1.157585 GAAAAACCCGAGCTGGTCTC 58.842 55.000 5.23 0.00 37.76 3.36
621 687 0.602905 CGAAAAACCCGAGCTGGTCT 60.603 55.000 5.23 0.00 37.76 3.85
624 690 2.978018 GCCGAAAAACCCGAGCTGG 61.978 63.158 0.00 0.00 37.55 4.85
626 692 2.671963 GGCCGAAAAACCCGAGCT 60.672 61.111 0.00 0.00 0.00 4.09
627 693 3.744719 GGGCCGAAAAACCCGAGC 61.745 66.667 0.00 0.00 36.07 5.03
631 697 4.980702 ACCCGGGCCGAAAAACCC 62.981 66.667 30.79 0.00 43.25 4.11
632 698 2.913578 AACCCGGGCCGAAAAACC 60.914 61.111 30.79 0.00 0.00 3.27
633 699 1.859427 GAGAACCCGGGCCGAAAAAC 61.859 60.000 30.79 14.26 0.00 2.43
634 700 1.601477 GAGAACCCGGGCCGAAAAA 60.601 57.895 30.79 0.00 0.00 1.94
635 701 2.032987 GAGAACCCGGGCCGAAAA 59.967 61.111 30.79 0.00 0.00 2.29
636 702 4.024545 GGAGAACCCGGGCCGAAA 62.025 66.667 30.79 0.00 0.00 3.46
661 759 0.464735 CCGTGTTTGGAGAACCCACA 60.465 55.000 0.00 0.00 46.62 4.17
666 764 1.534163 GCTTACCCGTGTTTGGAGAAC 59.466 52.381 0.00 0.00 0.00 3.01
667 765 1.418637 AGCTTACCCGTGTTTGGAGAA 59.581 47.619 0.00 0.00 0.00 2.87
669 767 2.618053 CTAGCTTACCCGTGTTTGGAG 58.382 52.381 0.00 0.00 0.00 3.86
670 768 1.276989 CCTAGCTTACCCGTGTTTGGA 59.723 52.381 0.00 0.00 0.00 3.53
671 769 1.002773 ACCTAGCTTACCCGTGTTTGG 59.997 52.381 0.00 0.00 0.00 3.28
672 770 2.073816 CACCTAGCTTACCCGTGTTTG 58.926 52.381 0.00 0.00 0.00 2.93
673 771 1.695788 ACACCTAGCTTACCCGTGTTT 59.304 47.619 0.00 0.00 34.07 2.83
674 772 1.001633 CACACCTAGCTTACCCGTGTT 59.998 52.381 0.00 0.00 35.56 3.32
675 773 0.606604 CACACCTAGCTTACCCGTGT 59.393 55.000 0.00 0.00 38.16 4.49
676 774 0.606604 ACACACCTAGCTTACCCGTG 59.393 55.000 0.00 0.00 0.00 4.94
677 775 0.606604 CACACACCTAGCTTACCCGT 59.393 55.000 0.00 0.00 0.00 5.28
678 776 0.606604 ACACACACCTAGCTTACCCG 59.393 55.000 0.00 0.00 0.00 5.28
679 777 2.853235 AACACACACCTAGCTTACCC 57.147 50.000 0.00 0.00 0.00 3.69
680 778 5.353400 GGAATTAACACACACCTAGCTTACC 59.647 44.000 0.00 0.00 0.00 2.85
681 779 6.171213 AGGAATTAACACACACCTAGCTTAC 58.829 40.000 0.00 0.00 0.00 2.34
682 780 6.368779 AGGAATTAACACACACCTAGCTTA 57.631 37.500 0.00 0.00 0.00 3.09
683 781 5.242795 AGGAATTAACACACACCTAGCTT 57.757 39.130 0.00 0.00 0.00 3.74
693 791 7.931578 ATATTTGGTTCGAGGAATTAACACA 57.068 32.000 0.00 0.00 0.00 3.72
702 800 6.320164 CACCCAAAATATATTTGGTTCGAGGA 59.680 38.462 14.56 0.00 45.63 3.71
706 804 7.095695 AGTCACCCAAAATATATTTGGTTCG 57.904 36.000 14.56 7.63 45.63 3.95
726 824 4.042809 TGGAAGAAAGGAAGGCATTAGTCA 59.957 41.667 0.00 0.00 0.00 3.41
729 1951 3.950395 CCTGGAAGAAAGGAAGGCATTAG 59.050 47.826 0.00 0.00 36.91 1.73
745 1967 0.044244 CTCTACCCCTTCCCCTGGAA 59.956 60.000 0.00 0.00 39.66 3.53
746 1968 0.858598 TCTCTACCCCTTCCCCTGGA 60.859 60.000 0.00 0.00 0.00 3.86
747 1969 0.269173 ATCTCTACCCCTTCCCCTGG 59.731 60.000 0.00 0.00 0.00 4.45
748 1970 1.428869 CATCTCTACCCCTTCCCCTG 58.571 60.000 0.00 0.00 0.00 4.45
758 1980 1.203523 CCGCATAGGAGCATCTCTACC 59.796 57.143 0.00 0.00 45.00 3.18
787 2009 0.872388 ACGTTCCAAGAACGCCATTC 59.128 50.000 25.06 0.00 46.58 2.67
788 2010 0.591170 CACGTTCCAAGAACGCCATT 59.409 50.000 25.06 7.23 46.58 3.16
789 2011 0.250124 TCACGTTCCAAGAACGCCAT 60.250 50.000 25.06 7.56 46.58 4.40
790 2012 0.878523 CTCACGTTCCAAGAACGCCA 60.879 55.000 25.06 13.45 46.58 5.69
830 2052 0.725784 CGCGGCAATGTGTTTCTCAC 60.726 55.000 0.00 0.00 46.31 3.51
831 2053 0.882484 TCGCGGCAATGTGTTTCTCA 60.882 50.000 6.13 0.00 0.00 3.27
832 2054 0.237235 TTCGCGGCAATGTGTTTCTC 59.763 50.000 6.13 0.00 0.00 2.87
833 2055 0.881118 ATTCGCGGCAATGTGTTTCT 59.119 45.000 6.13 0.00 0.00 2.52
834 2056 1.696988 AATTCGCGGCAATGTGTTTC 58.303 45.000 6.13 0.00 0.00 2.78
835 2057 2.058057 GAAATTCGCGGCAATGTGTTT 58.942 42.857 6.13 0.00 0.00 2.83
836 2058 1.668628 GGAAATTCGCGGCAATGTGTT 60.669 47.619 6.13 0.00 0.00 3.32
837 2059 0.109319 GGAAATTCGCGGCAATGTGT 60.109 50.000 6.13 0.00 0.00 3.72
838 2060 0.171007 AGGAAATTCGCGGCAATGTG 59.829 50.000 6.13 0.00 0.00 3.21
839 2061 0.887933 AAGGAAATTCGCGGCAATGT 59.112 45.000 6.13 0.00 0.00 2.71
840 2062 1.994916 AAAGGAAATTCGCGGCAATG 58.005 45.000 6.13 0.00 0.00 2.82
841 2063 2.741759 AAAAGGAAATTCGCGGCAAT 57.258 40.000 6.13 0.00 0.00 3.56
842 2064 2.035321 AGAAAAAGGAAATTCGCGGCAA 59.965 40.909 6.13 0.00 0.00 4.52
843 2065 1.611491 AGAAAAAGGAAATTCGCGGCA 59.389 42.857 6.13 0.00 0.00 5.69
844 2066 1.985684 CAGAAAAAGGAAATTCGCGGC 59.014 47.619 6.13 0.00 0.00 6.53
845 2067 3.492313 CTCAGAAAAAGGAAATTCGCGG 58.508 45.455 6.13 0.00 0.00 6.46
846 2068 3.492313 CCTCAGAAAAAGGAAATTCGCG 58.508 45.455 0.00 0.00 35.83 5.87
847 2069 3.367395 CCCCTCAGAAAAAGGAAATTCGC 60.367 47.826 0.00 0.00 35.83 4.70
848 2070 4.079253 TCCCCTCAGAAAAAGGAAATTCG 58.921 43.478 0.00 0.00 35.83 3.34
849 2071 4.220821 GGTCCCCTCAGAAAAAGGAAATTC 59.779 45.833 0.00 0.00 35.83 2.17
850 2072 4.140686 AGGTCCCCTCAGAAAAAGGAAATT 60.141 41.667 0.00 0.00 35.83 1.82
851 2073 3.402708 AGGTCCCCTCAGAAAAAGGAAAT 59.597 43.478 0.00 0.00 35.83 2.17
852 2074 2.789399 AGGTCCCCTCAGAAAAAGGAAA 59.211 45.455 0.00 0.00 35.83 3.13
853 2075 2.428901 AGGTCCCCTCAGAAAAAGGAA 58.571 47.619 0.00 0.00 35.83 3.36
854 2076 2.133858 AGGTCCCCTCAGAAAAAGGA 57.866 50.000 0.00 0.00 35.83 3.36
855 2077 2.893489 CAAAGGTCCCCTCAGAAAAAGG 59.107 50.000 0.00 0.00 30.89 3.11
856 2078 3.832527 TCAAAGGTCCCCTCAGAAAAAG 58.167 45.455 0.00 0.00 30.89 2.27
857 2079 3.963476 TCAAAGGTCCCCTCAGAAAAA 57.037 42.857 0.00 0.00 30.89 1.94
858 2080 3.766545 CATCAAAGGTCCCCTCAGAAAA 58.233 45.455 0.00 0.00 30.89 2.29
859 2081 2.555227 GCATCAAAGGTCCCCTCAGAAA 60.555 50.000 0.00 0.00 30.89 2.52
860 2082 1.004745 GCATCAAAGGTCCCCTCAGAA 59.995 52.381 0.00 0.00 30.89 3.02
902 2124 1.004918 AAGACGCTGAAACGGAGGG 60.005 57.895 0.00 0.00 37.37 4.30
904 2126 1.901650 GCCAAGACGCTGAAACGGAG 61.902 60.000 0.00 0.00 37.37 4.63
905 2127 1.959226 GCCAAGACGCTGAAACGGA 60.959 57.895 0.00 0.00 37.37 4.69
906 2128 2.175184 CTGCCAAGACGCTGAAACGG 62.175 60.000 0.00 0.00 37.37 4.44
908 2130 1.081840 GCTGCCAAGACGCTGAAAC 60.082 57.895 0.00 0.00 0.00 2.78
909 2131 1.525765 TGCTGCCAAGACGCTGAAA 60.526 52.632 0.00 0.00 0.00 2.69
910 2132 2.110835 TGCTGCCAAGACGCTGAA 59.889 55.556 0.00 0.00 0.00 3.02
930 2152 0.976641 TGACTTGACAGGCCTGTAGG 59.023 55.000 37.87 28.79 45.05 3.18
931 2153 2.037772 ACTTGACTTGACAGGCCTGTAG 59.962 50.000 37.87 31.87 45.05 2.74
932 2154 2.037251 GACTTGACTTGACAGGCCTGTA 59.963 50.000 37.87 22.71 45.05 2.74
935 2157 1.131638 TGACTTGACTTGACAGGCCT 58.868 50.000 0.00 0.00 0.00 5.19
937 2159 1.265365 GCTTGACTTGACTTGACAGGC 59.735 52.381 0.00 0.00 0.00 4.85
938 2160 1.876156 GGCTTGACTTGACTTGACAGG 59.124 52.381 0.00 0.00 0.00 4.00
940 2162 1.134521 ACGGCTTGACTTGACTTGACA 60.135 47.619 0.00 0.00 0.00 3.58
1003 2236 0.119155 AAGTGTGGAGGAGGGATGGA 59.881 55.000 0.00 0.00 0.00 3.41
1076 2526 0.035881 TTGGTGAGAGAAGGCAGCAG 59.964 55.000 0.00 0.00 42.56 4.24
1120 2573 3.157217 GAGGATCATGGACGGCGCT 62.157 63.158 6.90 0.00 33.17 5.92
1121 2574 2.663188 GAGGATCATGGACGGCGC 60.663 66.667 6.90 0.00 33.17 6.53
1144 2597 2.688794 GCAGCAGAGCAGCAGGAAC 61.689 63.158 1.36 0.00 40.73 3.62
1208 2661 4.317671 CCATTTCAGATGATGGGCTTTC 57.682 45.455 5.70 0.00 39.30 2.62
1239 2698 2.170607 TCCAAGGTAGCATAAGCCTGAC 59.829 50.000 0.00 0.00 43.56 3.51
1243 2705 1.211949 TGGTCCAAGGTAGCATAAGCC 59.788 52.381 0.00 0.00 43.56 4.35
1276 2738 2.162921 CTGCGACTGAACAAGGCACG 62.163 60.000 0.00 0.00 30.58 5.34
1349 2823 9.688091 AGTAGTGATCTGATCTAAACACTCTTA 57.312 33.333 17.82 0.00 38.99 2.10
1351 2825 8.588290 AAGTAGTGATCTGATCTAAACACTCT 57.412 34.615 17.82 9.61 38.99 3.24
1386 2860 9.436957 CCTCCGTAAACTGATATAATAGCATTT 57.563 33.333 0.00 0.00 0.00 2.32
1387 2861 8.041323 CCCTCCGTAAACTGATATAATAGCATT 58.959 37.037 0.00 0.00 0.00 3.56
1388 2862 7.399191 TCCCTCCGTAAACTGATATAATAGCAT 59.601 37.037 0.00 0.00 0.00 3.79
1389 2863 6.722590 TCCCTCCGTAAACTGATATAATAGCA 59.277 38.462 0.00 0.00 0.00 3.49
1390 2864 7.093858 ACTCCCTCCGTAAACTGATATAATAGC 60.094 40.741 0.00 0.00 0.00 2.97
1391 2865 8.350852 ACTCCCTCCGTAAACTGATATAATAG 57.649 38.462 0.00 0.00 0.00 1.73
1392 2866 9.236006 GTACTCCCTCCGTAAACTGATATAATA 57.764 37.037 0.00 0.00 0.00 0.98
1393 2867 7.727186 TGTACTCCCTCCGTAAACTGATATAAT 59.273 37.037 0.00 0.00 0.00 1.28
1394 2868 7.062322 TGTACTCCCTCCGTAAACTGATATAA 58.938 38.462 0.00 0.00 0.00 0.98
1395 2869 6.604171 TGTACTCCCTCCGTAAACTGATATA 58.396 40.000 0.00 0.00 0.00 0.86
1396 2870 5.452255 TGTACTCCCTCCGTAAACTGATAT 58.548 41.667 0.00 0.00 0.00 1.63
1397 2871 4.858850 TGTACTCCCTCCGTAAACTGATA 58.141 43.478 0.00 0.00 0.00 2.15
1398 2872 3.705051 TGTACTCCCTCCGTAAACTGAT 58.295 45.455 0.00 0.00 0.00 2.90
1399 2873 3.159213 TGTACTCCCTCCGTAAACTGA 57.841 47.619 0.00 0.00 0.00 3.41
1400 2874 4.467198 AATGTACTCCCTCCGTAAACTG 57.533 45.455 0.00 0.00 0.00 3.16
1401 2875 5.018809 TGTAATGTACTCCCTCCGTAAACT 58.981 41.667 0.00 0.00 0.00 2.66
1402 2876 5.329035 TGTAATGTACTCCCTCCGTAAAC 57.671 43.478 0.00 0.00 0.00 2.01
1403 2877 5.999205 TTGTAATGTACTCCCTCCGTAAA 57.001 39.130 0.00 0.00 0.00 2.01
1404 2878 5.895534 AGATTGTAATGTACTCCCTCCGTAA 59.104 40.000 0.00 0.00 0.00 3.18
1405 2879 5.301045 CAGATTGTAATGTACTCCCTCCGTA 59.699 44.000 0.00 0.00 0.00 4.02
1406 2880 4.099573 CAGATTGTAATGTACTCCCTCCGT 59.900 45.833 0.00 0.00 0.00 4.69
1407 2881 4.341235 TCAGATTGTAATGTACTCCCTCCG 59.659 45.833 0.00 0.00 0.00 4.63
1408 2882 5.871396 TCAGATTGTAATGTACTCCCTCC 57.129 43.478 0.00 0.00 0.00 4.30
1409 2883 7.439655 GTGAATCAGATTGTAATGTACTCCCTC 59.560 40.741 0.00 0.00 0.00 4.30
1410 2884 7.092891 TGTGAATCAGATTGTAATGTACTCCCT 60.093 37.037 0.00 0.00 0.00 4.20
1411 2885 7.047891 TGTGAATCAGATTGTAATGTACTCCC 58.952 38.462 0.00 0.00 0.00 4.30
1412 2886 8.668510 ATGTGAATCAGATTGTAATGTACTCC 57.331 34.615 0.00 0.00 0.00 3.85
1414 2888 9.896645 AGAATGTGAATCAGATTGTAATGTACT 57.103 29.630 10.46 0.00 27.44 2.73
1417 2891 9.458727 AAGAGAATGTGAATCAGATTGTAATGT 57.541 29.630 10.46 0.00 27.44 2.71
1420 2894 8.659491 CGAAAGAGAATGTGAATCAGATTGTAA 58.341 33.333 10.46 0.00 27.44 2.41
1421 2895 7.278646 CCGAAAGAGAATGTGAATCAGATTGTA 59.721 37.037 10.46 0.00 27.44 2.41
1422 2896 6.093219 CCGAAAGAGAATGTGAATCAGATTGT 59.907 38.462 10.46 6.41 27.44 2.71
1423 2897 6.484540 CCGAAAGAGAATGTGAATCAGATTG 58.515 40.000 10.46 0.00 27.44 2.67
1433 2907 1.059369 CGCGCCGAAAGAGAATGTG 59.941 57.895 0.00 0.00 0.00 3.21
1437 2911 2.537792 ATCGACGCGCCGAAAGAGAA 62.538 55.000 23.60 0.00 42.22 2.87
1439 2913 2.568912 GATCGACGCGCCGAAAGAG 61.569 63.158 23.60 0.00 42.22 2.85
1442 2916 3.744749 ATCGATCGACGCGCCGAAA 62.745 57.895 23.60 10.99 42.22 3.46
1584 3075 7.435305 GTTCTTCAGACAGGTAAGTAAAGTCT 58.565 38.462 0.00 0.00 39.95 3.24
1585 3076 6.645827 GGTTCTTCAGACAGGTAAGTAAAGTC 59.354 42.308 0.00 0.00 0.00 3.01
1586 3077 6.326843 AGGTTCTTCAGACAGGTAAGTAAAGT 59.673 38.462 0.00 0.00 0.00 2.66
1587 3078 6.760291 AGGTTCTTCAGACAGGTAAGTAAAG 58.240 40.000 0.00 0.00 0.00 1.85
1588 3079 6.742559 AGGTTCTTCAGACAGGTAAGTAAA 57.257 37.500 0.00 0.00 0.00 2.01
1590 3081 6.071503 GCTAAGGTTCTTCAGACAGGTAAGTA 60.072 42.308 0.00 0.00 0.00 2.24
1594 3085 3.514309 GGCTAAGGTTCTTCAGACAGGTA 59.486 47.826 0.00 0.00 0.00 3.08
1595 3086 2.303311 GGCTAAGGTTCTTCAGACAGGT 59.697 50.000 0.00 0.00 0.00 4.00
1597 3088 2.355209 GGGGCTAAGGTTCTTCAGACAG 60.355 54.545 0.00 0.00 0.00 3.51
1599 3090 1.909986 AGGGGCTAAGGTTCTTCAGAC 59.090 52.381 0.00 0.00 0.00 3.51
1601 3092 3.441500 AAAGGGGCTAAGGTTCTTCAG 57.558 47.619 0.00 0.00 0.00 3.02
1602 3093 3.397955 AGAAAAGGGGCTAAGGTTCTTCA 59.602 43.478 0.00 0.00 0.00 3.02
1603 3094 4.035612 AGAAAAGGGGCTAAGGTTCTTC 57.964 45.455 0.00 0.00 0.00 2.87
1604 3095 4.141018 TGAAGAAAAGGGGCTAAGGTTCTT 60.141 41.667 0.00 0.00 37.87 2.52
1605 3096 3.397955 TGAAGAAAAGGGGCTAAGGTTCT 59.602 43.478 0.00 0.00 0.00 3.01
1606 3097 3.759086 CTGAAGAAAAGGGGCTAAGGTTC 59.241 47.826 0.00 0.00 0.00 3.62
1608 3099 2.716969 ACTGAAGAAAAGGGGCTAAGGT 59.283 45.455 0.00 0.00 0.00 3.50
1612 3103 6.012333 TGGTAATAACTGAAGAAAAGGGGCTA 60.012 38.462 0.00 0.00 0.00 3.93
1613 3104 5.222254 TGGTAATAACTGAAGAAAAGGGGCT 60.222 40.000 0.00 0.00 0.00 5.19
1614 3105 5.014202 TGGTAATAACTGAAGAAAAGGGGC 58.986 41.667 0.00 0.00 0.00 5.80
1615 3106 5.417894 GGTGGTAATAACTGAAGAAAAGGGG 59.582 44.000 0.00 0.00 0.00 4.79
1618 3109 9.226606 TGTATGGTGGTAATAACTGAAGAAAAG 57.773 33.333 0.00 0.00 0.00 2.27
1636 3127 6.510879 TCAGAACTACTACTGTGTATGGTG 57.489 41.667 0.00 0.00 35.84 4.17
1645 3143 9.219603 TCCATGAAAAATTCAGAACTACTACTG 57.780 33.333 0.00 0.00 43.98 2.74
1676 3174 1.522668 CTTCCCTGTTCATTCACGCA 58.477 50.000 0.00 0.00 0.00 5.24
1677 3175 0.169009 GCTTCCCTGTTCATTCACGC 59.831 55.000 0.00 0.00 0.00 5.34
1678 3176 0.443869 CGCTTCCCTGTTCATTCACG 59.556 55.000 0.00 0.00 0.00 4.35
1679 3177 0.804989 CCGCTTCCCTGTTCATTCAC 59.195 55.000 0.00 0.00 0.00 3.18
1680 3178 0.400213 ACCGCTTCCCTGTTCATTCA 59.600 50.000 0.00 0.00 0.00 2.57
1790 3292 2.537792 GATGGCGTTGTCCTCGTCGA 62.538 60.000 0.00 0.00 35.59 4.20
1850 3352 1.600636 CTTCACCACCGTGCACCAT 60.601 57.895 12.15 0.00 40.04 3.55
1856 3358 1.531149 GTTCATCACTTCACCACCGTG 59.469 52.381 0.00 0.00 41.72 4.94
1857 3359 1.416401 AGTTCATCACTTCACCACCGT 59.584 47.619 0.00 0.00 27.32 4.83
1868 3370 6.989169 AGATCATAAGCCAGTTAGTTCATCAC 59.011 38.462 0.00 0.00 0.00 3.06
1870 3372 9.717942 ATAAGATCATAAGCCAGTTAGTTCATC 57.282 33.333 0.00 0.00 0.00 2.92
1994 3512 4.642542 GCGGCGATCTCCCGGTAC 62.643 72.222 12.98 3.78 45.66 3.34
2032 3550 2.034305 GGAATCAGTGGCAAGATGATGC 59.966 50.000 10.72 9.17 45.67 3.91
2052 3570 2.038295 AGACCAGTCTTTCTCTTGCAGG 59.962 50.000 0.00 0.00 36.31 4.85
2118 3652 0.668706 CCTCTATGATCGGCGCCAAG 60.669 60.000 28.98 11.67 0.00 3.61
2119 3653 1.367471 CCTCTATGATCGGCGCCAA 59.633 57.895 28.98 9.13 0.00 4.52
2215 3749 1.412343 AGGACACACACAAAAATGGCC 59.588 47.619 0.00 0.00 40.94 5.36
2233 3767 9.382275 TGAAAATTTTCAAAAGGAGAAAAGAGG 57.618 29.630 27.22 0.00 45.06 3.69
2244 3779 8.652810 AGACATGGTCTGAAAATTTTCAAAAG 57.347 30.769 28.49 19.43 45.61 2.27
2381 3916 2.962421 CCTCTCCTCCATGTAGTTCTCC 59.038 54.545 0.00 0.00 0.00 3.71
2439 3974 4.271661 TGGCATTCAGCTGTATCAATCAA 58.728 39.130 14.67 0.00 44.79 2.57
2440 3975 3.888583 TGGCATTCAGCTGTATCAATCA 58.111 40.909 14.67 2.44 44.79 2.57
2441 3976 4.337555 ACTTGGCATTCAGCTGTATCAATC 59.662 41.667 14.67 0.00 44.79 2.67
2442 3977 4.275810 ACTTGGCATTCAGCTGTATCAAT 58.724 39.130 14.67 2.86 44.79 2.57
2466 4001 2.498167 CAGTCAGGTTTTGGAGACAGG 58.502 52.381 0.00 0.00 44.54 4.00
2480 4017 2.357009 GGAGCATATGCAAACCAGTCAG 59.643 50.000 28.62 0.00 45.16 3.51
2498 4035 4.194640 CACAACCCATAATGTCTCTGGAG 58.805 47.826 0.00 0.00 31.38 3.86
2501 4038 5.702865 CAAACACAACCCATAATGTCTCTG 58.297 41.667 0.00 0.00 0.00 3.35
2502 4039 4.218417 GCAAACACAACCCATAATGTCTCT 59.782 41.667 0.00 0.00 0.00 3.10
2504 4041 4.151883 AGCAAACACAACCCATAATGTCT 58.848 39.130 0.00 0.00 0.00 3.41
2611 4153 0.529378 AAGTTATCGAACCGGCGTCT 59.471 50.000 6.01 0.00 36.08 4.18
2619 4161 4.809426 CCACATACCTGGAAGTTATCGAAC 59.191 45.833 0.00 0.00 32.30 3.95
2699 4242 2.234168 GAGGTGGGGACTGAGTTAGTTC 59.766 54.545 0.00 0.00 40.53 3.01
2821 4364 0.915364 GGCTTGGGATCTTCTCCAGT 59.085 55.000 0.00 0.00 46.98 4.00
2836 4379 1.519455 GATCGCAGCGTACTGGCTT 60.519 57.895 15.93 0.00 44.63 4.35
2866 4409 1.208052 TCTGCTGGCAAGTACCTGATC 59.792 52.381 0.00 0.00 0.00 2.92
2877 4420 1.481363 CTTCTCTCTGATCTGCTGGCA 59.519 52.381 0.00 0.00 0.00 4.92
2885 4428 9.171877 ACAAATAAATCAACCTTCTCTCTGATC 57.828 33.333 0.00 0.00 0.00 2.92
2886 4429 9.171877 GACAAATAAATCAACCTTCTCTCTGAT 57.828 33.333 0.00 0.00 0.00 2.90
2909 4468 8.012957 AGAAAAGAGAGTAAACTTCTGAGACA 57.987 34.615 0.00 0.00 0.00 3.41
2947 4506 3.952323 CAGCCAGATCACTGAAAATGGAT 59.048 43.478 10.33 3.09 46.03 3.41
3128 4687 3.565307 TGGCTGGAAGAAAATGAGTTGT 58.435 40.909 0.00 0.00 34.07 3.32
3141 4700 1.352622 ACAGGAGGTGTTGGCTGGAA 61.353 55.000 0.00 0.00 34.94 3.53
3142 4701 1.770110 ACAGGAGGTGTTGGCTGGA 60.770 57.895 0.00 0.00 34.94 3.86
3143 4702 2.839098 ACAGGAGGTGTTGGCTGG 59.161 61.111 0.00 0.00 34.94 4.85
3153 4712 8.391075 TCAAAAGAGTACAAATAAACAGGAGG 57.609 34.615 0.00 0.00 0.00 4.30
3271 4834 4.828939 ACTCATTTTTGCTGATTCAGGTGA 59.171 37.500 15.28 0.00 31.21 4.02
3293 4856 7.122055 TGGATTTCTTTATATGACCACCACAAC 59.878 37.037 0.00 0.00 0.00 3.32
3336 4899 6.503524 TCTTTGGGAAAATCGTCTCTTTTTG 58.496 36.000 0.00 0.00 0.00 2.44
3337 4900 6.709018 TCTTTGGGAAAATCGTCTCTTTTT 57.291 33.333 0.00 0.00 0.00 1.94
3341 4904 5.560724 TCATTCTTTGGGAAAATCGTCTCT 58.439 37.500 0.00 0.00 37.49 3.10
3469 5034 3.440522 GGTTCTTCCTGTAGATGTTTGGC 59.559 47.826 0.00 0.00 0.00 4.52
3695 5262 4.838152 CGCAGCGGCCACAGGTAT 62.838 66.667 7.00 0.00 36.38 2.73
3815 5382 2.091112 CCGTGACGCAGCAGAGAAG 61.091 63.158 0.00 0.00 0.00 2.85
4020 5593 4.112634 TGGCTTGTTCTCAAATAGGGTT 57.887 40.909 0.00 0.00 32.87 4.11
4021 5594 3.806949 TGGCTTGTTCTCAAATAGGGT 57.193 42.857 0.00 0.00 32.87 4.34
4025 5598 6.916360 AAGGAAATGGCTTGTTCTCAAATA 57.084 33.333 0.00 0.00 32.87 1.40
4028 5601 5.136828 TGTAAGGAAATGGCTTGTTCTCAA 58.863 37.500 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.