Multiple sequence alignment - TraesCS5B01G371000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G371000 chr5B 100.000 2462 0 0 920 3381 549944052 549946513 0.000000e+00 4547.0
1 TraesCS5B01G371000 chr5B 100.000 473 0 0 1 473 549943133 549943605 0.000000e+00 874.0
2 TraesCS5B01G371000 chr5B 81.652 932 99 33 1502 2422 549769575 549768705 0.000000e+00 708.0
3 TraesCS5B01G371000 chr5B 89.509 448 40 3 1032 1472 549770019 549769572 8.190000e-156 560.0
4 TraesCS5B01G371000 chr5B 100.000 30 0 0 357 386 549943432 549943461 4.710000e-04 56.5
5 TraesCS5B01G371000 chr5A 92.424 1254 62 13 999 2251 569172914 569174135 0.000000e+00 1759.0
6 TraesCS5B01G371000 chr5A 85.101 1282 123 34 975 2235 569162275 569161041 0.000000e+00 1247.0
7 TraesCS5B01G371000 chr5A 84.758 538 52 20 2725 3249 569178460 569178980 2.330000e-141 512.0
8 TraesCS5B01G371000 chr5A 88.018 217 21 4 2448 2659 569174885 569175101 5.600000e-63 252.0
9 TraesCS5B01G371000 chr5A 89.305 187 10 8 2273 2452 569174498 569174681 3.390000e-55 226.0
10 TraesCS5B01G371000 chr5A 92.453 159 8 2 3224 3381 569216989 569217144 1.220000e-54 224.0
11 TraesCS5B01G371000 chr5A 91.000 100 7 2 2354 2452 569154859 569154761 2.120000e-27 134.0
12 TraesCS5B01G371000 chr5D 89.605 885 65 16 1239 2120 449906321 449907181 0.000000e+00 1099.0
13 TraesCS5B01G371000 chr5D 83.501 1194 126 37 1278 2452 449889100 449887959 0.000000e+00 1048.0
14 TraesCS5B01G371000 chr5D 83.699 638 51 23 2448 3045 449912843 449913467 1.370000e-153 553.0
15 TraesCS5B01G371000 chr5D 91.803 305 20 4 975 1276 449894557 449894255 1.450000e-113 420.0
16 TraesCS5B01G371000 chr5D 87.574 338 26 9 2125 2452 449912310 449912641 8.860000e-101 377.0
17 TraesCS5B01G371000 chr5D 93.534 232 10 2 975 1206 449906091 449906317 1.160000e-89 340.0
18 TraesCS5B01G371000 chr5D 90.659 182 16 1 2770 2951 449897935 449898115 1.210000e-59 241.0
19 TraesCS5B01G371000 chr5D 80.899 356 24 14 3038 3381 449933247 449933570 1.210000e-59 241.0
20 TraesCS5B01G371000 chr3D 80.203 1480 198 49 1006 2452 608584959 608586376 0.000000e+00 1022.0
21 TraesCS5B01G371000 chr3D 91.156 147 13 0 1334 1480 608587444 608587590 2.060000e-47 200.0
22 TraesCS5B01G371000 chr2B 98.732 473 6 0 1 473 43267825 43268297 0.000000e+00 841.0
23 TraesCS5B01G371000 chr2B 100.000 30 0 0 357 386 43268124 43268153 4.710000e-04 56.5
24 TraesCS5B01G371000 chr7A 98.520 473 7 0 1 473 20206859 20207331 0.000000e+00 835.0
25 TraesCS5B01G371000 chr7A 99.125 343 3 0 1 343 401428154 401428496 4.790000e-173 617.0
26 TraesCS5B01G371000 chr7A 98.276 58 1 0 416 473 401428757 401428814 5.970000e-18 102.0
27 TraesCS5B01G371000 chr7A 97.297 37 1 0 920 956 401428978 401429014 2.820000e-06 63.9
28 TraesCS5B01G371000 chr7A 100.000 30 0 0 357 386 20207158 20207187 4.710000e-04 56.5
29 TraesCS5B01G371000 chr7A 100.000 30 0 0 357 386 401428453 401428482 4.710000e-04 56.5
30 TraesCS5B01G371000 chr2A 96.617 473 16 0 1 473 24961094 24961566 0.000000e+00 785.0
31 TraesCS5B01G371000 chr2A 100.000 30 0 0 357 386 24961393 24961422 4.710000e-04 56.5
32 TraesCS5B01G371000 chr1D 90.169 356 28 3 5 353 464289864 464289509 1.110000e-124 457.0
33 TraesCS5B01G371000 chr7D 89.944 358 29 3 3 353 169443454 169443811 3.980000e-124 455.0
34 TraesCS5B01G371000 chr7D 89.665 358 29 4 3 353 109600627 109600983 1.850000e-122 449.0
35 TraesCS5B01G371000 chrUn 89.665 358 30 3 3 353 94834906 94835263 1.850000e-122 449.0
36 TraesCS5B01G371000 chr3B 88.859 368 31 5 3 360 64791197 64791564 8.610000e-121 444.0
37 TraesCS5B01G371000 chr3A 91.667 60 5 0 1348 1407 741159844 741159903 2.160000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G371000 chr5B 549943133 549946513 3380 False 1825.833333 4547 100.00000 1 3381 3 chr5B.!!$F1 3380
1 TraesCS5B01G371000 chr5B 549768705 549770019 1314 True 634.000000 708 85.58050 1032 2422 2 chr5B.!!$R1 1390
2 TraesCS5B01G371000 chr5A 569161041 569162275 1234 True 1247.000000 1247 85.10100 975 2235 1 chr5A.!!$R2 1260
3 TraesCS5B01G371000 chr5A 569172914 569178980 6066 False 687.250000 1759 88.62625 999 3249 4 chr5A.!!$F2 2250
4 TraesCS5B01G371000 chr5D 449887959 449889100 1141 True 1048.000000 1048 83.50100 1278 2452 1 chr5D.!!$R1 1174
5 TraesCS5B01G371000 chr5D 449906091 449907181 1090 False 719.500000 1099 91.56950 975 2120 2 chr5D.!!$F3 1145
6 TraesCS5B01G371000 chr5D 449912310 449913467 1157 False 465.000000 553 85.63650 2125 3045 2 chr5D.!!$F4 920
7 TraesCS5B01G371000 chr3D 608584959 608587590 2631 False 611.000000 1022 85.67950 1006 2452 2 chr3D.!!$F1 1446
8 TraesCS5B01G371000 chr7A 401428154 401429014 860 False 209.850000 617 98.67450 1 956 4 chr7A.!!$F2 955

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
953 1142 0.413832 AGCTAGGTTGACTGGGGAGA 59.586 55.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2394 3035 0.179089 ACTAGATCGGCTGCTGCTTG 60.179 55.0 15.64 8.6 39.59 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
343 344 3.353342 GAGGATCCCATGGCAATCC 57.647 57.895 26.12 26.12 39.44 3.01
344 345 0.607489 GAGGATCCCATGGCAATCCG 60.607 60.000 26.58 7.68 43.12 4.18
345 346 2.270986 GGATCCCATGGCAATCCGC 61.271 63.158 21.95 7.06 41.28 5.54
346 347 1.529010 GATCCCATGGCAATCCGCA 60.529 57.895 6.09 0.00 45.17 5.69
347 348 1.521450 GATCCCATGGCAATCCGCAG 61.521 60.000 6.09 0.00 45.17 5.18
348 349 1.998444 ATCCCATGGCAATCCGCAGA 61.998 55.000 6.09 0.00 45.17 4.26
349 350 2.191513 CCCATGGCAATCCGCAGAG 61.192 63.158 6.09 0.00 45.17 3.35
350 351 2.191513 CCATGGCAATCCGCAGAGG 61.192 63.158 0.00 0.00 45.17 3.69
351 352 2.517875 ATGGCAATCCGCAGAGGC 60.518 61.111 0.00 0.00 45.17 4.70
362 363 3.465403 CAGAGGCGGAGGGAGGTG 61.465 72.222 0.00 0.00 0.00 4.00
363 364 4.787280 AGAGGCGGAGGGAGGTGG 62.787 72.222 0.00 0.00 0.00 4.61
374 375 4.704833 GAGGTGGCGGCAGCTTGA 62.705 66.667 38.85 2.17 44.37 3.02
375 376 4.711949 AGGTGGCGGCAGCTTGAG 62.712 66.667 34.71 0.00 44.37 3.02
386 387 3.394836 GCTTGAGCGGAGGGAGGT 61.395 66.667 0.00 0.00 0.00 3.85
387 388 2.581354 CTTGAGCGGAGGGAGGTG 59.419 66.667 0.00 0.00 0.00 4.00
388 389 3.003173 TTGAGCGGAGGGAGGTGG 61.003 66.667 0.00 0.00 0.00 4.61
399 400 4.704833 GAGGTGGCGGCAGCTTGA 62.705 66.667 38.85 2.17 44.37 3.02
400 401 4.711949 AGGTGGCGGCAGCTTGAG 62.712 66.667 34.71 0.00 44.37 3.02
411 412 3.957260 GCTTGAGCGTGCAGAAGA 58.043 55.556 6.96 0.00 0.00 2.87
412 413 1.786582 GCTTGAGCGTGCAGAAGAG 59.213 57.895 6.96 0.00 0.00 2.85
413 414 0.668706 GCTTGAGCGTGCAGAAGAGA 60.669 55.000 6.96 0.00 0.00 3.10
414 415 1.066914 CTTGAGCGTGCAGAAGAGAC 58.933 55.000 0.00 0.00 0.00 3.36
431 620 1.530013 GACCCCGTCTTCGTCCTCAA 61.530 60.000 0.00 0.00 35.01 3.02
953 1142 0.413832 AGCTAGGTTGACTGGGGAGA 59.586 55.000 0.00 0.00 0.00 3.71
954 1143 1.008938 AGCTAGGTTGACTGGGGAGAT 59.991 52.381 0.00 0.00 0.00 2.75
956 1145 2.630580 GCTAGGTTGACTGGGGAGATAG 59.369 54.545 0.00 0.00 0.00 2.08
957 1146 2.182516 AGGTTGACTGGGGAGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
958 1147 1.366435 AGGTTGACTGGGGAGATAGGT 59.634 52.381 0.00 0.00 0.00 3.08
959 1148 2.197465 GGTTGACTGGGGAGATAGGTT 58.803 52.381 0.00 0.00 0.00 3.50
960 1149 2.092914 GGTTGACTGGGGAGATAGGTTG 60.093 54.545 0.00 0.00 0.00 3.77
961 1150 2.838202 GTTGACTGGGGAGATAGGTTGA 59.162 50.000 0.00 0.00 0.00 3.18
962 1151 2.467880 TGACTGGGGAGATAGGTTGAC 58.532 52.381 0.00 0.00 0.00 3.18
963 1152 2.044492 TGACTGGGGAGATAGGTTGACT 59.956 50.000 0.00 0.00 0.00 3.41
968 1157 1.344087 GGGAGATAGGTTGACTGGGGA 60.344 57.143 0.00 0.00 0.00 4.81
972 1161 4.449376 GGAGATAGGTTGACTGGGGAGATA 60.449 50.000 0.00 0.00 0.00 1.98
996 1187 5.420421 AGGTCGATTTCTCTCTCAAGATCAA 59.580 40.000 0.00 0.00 0.00 2.57
997 1188 5.748152 GGTCGATTTCTCTCTCAAGATCAAG 59.252 44.000 0.00 0.00 0.00 3.02
1118 1313 1.493311 GCTTCGTCAGCTTTCACGG 59.507 57.895 9.19 0.00 46.27 4.94
1314 1512 0.890996 GGAGAAACTGGGTGTGCAGG 60.891 60.000 0.00 0.00 0.00 4.85
1323 1521 3.986006 GTGTGCAGGACGGACGGA 61.986 66.667 0.00 0.00 39.19 4.69
1467 1672 3.258070 CTACGACGACGGCACCACA 62.258 63.158 12.58 0.00 44.46 4.17
1487 1752 4.333649 CACATTCCTGTACAGCTACAATGG 59.666 45.833 24.22 11.46 32.24 3.16
1488 1753 4.225042 ACATTCCTGTACAGCTACAATGGA 59.775 41.667 24.22 13.08 32.24 3.41
1489 1754 4.901197 TTCCTGTACAGCTACAATGGAA 57.099 40.909 17.86 10.74 35.95 3.53
1509 1774 0.038166 GAAGTGGATGGTTCAGGGCA 59.962 55.000 0.00 0.00 0.00 5.36
1571 1840 1.128188 AGGACCCTCGAAGCACCTTT 61.128 55.000 0.00 0.00 0.00 3.11
1725 2003 1.014564 GTTTGCCGTCGGAGGAAGAG 61.015 60.000 17.49 0.00 0.00 2.85
1726 2004 2.781595 TTTGCCGTCGGAGGAAGAGC 62.782 60.000 17.49 0.00 0.00 4.09
1727 2005 4.516195 GCCGTCGGAGGAAGAGCC 62.516 72.222 17.49 0.00 0.00 4.70
1791 2069 0.466189 AGCTTCTGTGGGTGGTTGTG 60.466 55.000 0.00 0.00 0.00 3.33
1824 2102 2.531206 CGCAGTTACACTCCTAAGAGC 58.469 52.381 0.00 0.00 44.65 4.09
1879 2157 0.683504 GCTAGGGGAGGAGACAACGA 60.684 60.000 0.00 0.00 0.00 3.85
1884 2162 1.154263 GGAGGAGACAACGACGTCG 60.154 63.158 34.58 34.58 46.33 5.12
1885 2163 1.796749 GAGGAGACAACGACGTCGC 60.797 63.158 35.92 20.40 44.43 5.19
1898 2179 2.654877 GTCGCCACCGGAGAAGAA 59.345 61.111 9.46 0.00 32.47 2.52
1899 2180 1.218316 GTCGCCACCGGAGAAGAAT 59.782 57.895 9.46 0.00 32.47 2.40
1900 2181 0.458669 GTCGCCACCGGAGAAGAATA 59.541 55.000 9.46 0.00 32.47 1.75
1901 2182 0.458669 TCGCCACCGGAGAAGAATAC 59.541 55.000 9.46 0.00 34.56 1.89
1902 2183 0.174845 CGCCACCGGAGAAGAATACA 59.825 55.000 9.46 0.00 0.00 2.29
1903 2184 1.653151 GCCACCGGAGAAGAATACAC 58.347 55.000 9.46 0.00 0.00 2.90
1930 2211 1.026718 GGTGAGGAAAGACGGCCATG 61.027 60.000 2.24 0.00 0.00 3.66
2007 2289 4.796495 GGCTGTTGGGCGGTAGGG 62.796 72.222 0.00 0.00 0.00 3.53
2008 2290 3.712907 GCTGTTGGGCGGTAGGGA 61.713 66.667 0.00 0.00 0.00 4.20
2009 2291 2.267961 CTGTTGGGCGGTAGGGAC 59.732 66.667 0.00 0.00 0.00 4.46
2010 2292 3.659089 CTGTTGGGCGGTAGGGACG 62.659 68.421 0.00 0.00 0.00 4.79
2011 2293 3.698820 GTTGGGCGGTAGGGACGT 61.699 66.667 0.00 0.00 0.00 4.34
2012 2294 3.384532 TTGGGCGGTAGGGACGTC 61.385 66.667 7.13 7.13 34.75 4.34
2050 2332 2.735134 ACTTCGTCTACCGTGAAAATGC 59.265 45.455 0.00 0.00 37.94 3.56
2252 2541 8.862325 TTCAGGTATGTTTGACAAATGATACT 57.138 30.769 21.02 10.25 0.00 2.12
2255 2856 8.607459 CAGGTATGTTTGACAAATGATACTCTC 58.393 37.037 21.02 11.99 0.00 3.20
2258 2859 9.979270 GTATGTTTGACAAATGATACTCTCTTG 57.021 33.333 17.64 0.00 0.00 3.02
2284 2885 7.559590 AATCATAGCCACATCAAGAGTTTAC 57.440 36.000 0.00 0.00 0.00 2.01
2289 2890 5.876357 AGCCACATCAAGAGTTTACCTTTA 58.124 37.500 0.00 0.00 0.00 1.85
2290 2891 6.303839 AGCCACATCAAGAGTTTACCTTTAA 58.696 36.000 0.00 0.00 0.00 1.52
2323 2958 7.927629 AGAGACTCTTCATAAGCATCTCAAATC 59.072 37.037 0.00 0.00 39.62 2.17
2324 2959 7.563020 AGACTCTTCATAAGCATCTCAAATCA 58.437 34.615 0.00 0.00 0.00 2.57
2326 2961 8.571461 ACTCTTCATAAGCATCTCAAATCAAA 57.429 30.769 0.00 0.00 0.00 2.69
2329 2964 9.797556 TCTTCATAAGCATCTCAAATCAAATTG 57.202 29.630 0.00 0.00 0.00 2.32
2330 2965 9.797556 CTTCATAAGCATCTCAAATCAAATTGA 57.202 29.630 0.00 0.00 37.70 2.57
2512 3381 2.191513 CCGGCCATGCATCTTCCAG 61.192 63.158 2.24 0.00 0.00 3.86
2570 3524 6.494893 TGATCCTCTTTGTTCGTAAAATGG 57.505 37.500 0.00 0.00 0.00 3.16
2579 3533 7.655328 TCTTTGTTCGTAAAATGGCAATGAAAT 59.345 29.630 0.00 0.00 0.00 2.17
2582 3536 7.371159 TGTTCGTAAAATGGCAATGAAATGTA 58.629 30.769 0.00 0.00 0.00 2.29
2639 3602 2.948979 TGACTCAAGTGGCGAAAAACAT 59.051 40.909 0.00 0.00 0.00 2.71
2661 3658 8.715191 ACATGAAACTTTGAACTTTATTTGCA 57.285 26.923 0.00 0.00 0.00 4.08
2723 6991 8.570068 AAAATAGAAACCTATTTTCGGCTGTA 57.430 30.769 14.10 0.00 46.09 2.74
2741 7031 8.678199 TCGGCTGTATATATAGAGATGTTGAAG 58.322 37.037 18.59 2.96 0.00 3.02
2776 7066 2.823829 GCACCGCAGCCTAATTCCG 61.824 63.158 0.00 0.00 0.00 4.30
2840 7393 4.096382 CGTTTCTATGAAATGGAACTGGGG 59.904 45.833 4.79 0.00 43.84 4.96
2897 7451 3.399330 TCCTTGATTTTGGTCACTCGAC 58.601 45.455 0.00 0.00 41.80 4.20
2920 7474 7.254692 CGACCGAATAGTAAGTGAGATCTACAA 60.255 40.741 0.00 0.00 0.00 2.41
3045 7608 3.680937 CCGTTGGTAGAGCGTCATTTTTA 59.319 43.478 0.00 0.00 0.00 1.52
3046 7609 4.331717 CCGTTGGTAGAGCGTCATTTTTAT 59.668 41.667 0.00 0.00 0.00 1.40
3074 7638 6.569228 TTCTATGTATTTTTCTCGAGCACG 57.431 37.500 7.81 0.00 41.26 5.34
3080 7644 5.975344 TGTATTTTTCTCGAGCACGGTATAG 59.025 40.000 7.81 0.00 40.21 1.31
3083 7647 3.416119 TTCTCGAGCACGGTATAGTTG 57.584 47.619 7.81 0.00 40.21 3.16
3086 7650 1.063027 TCGAGCACGGTATAGTTGTCG 59.937 52.381 3.11 0.00 40.21 4.35
3108 7672 4.140518 TGTATGCACACATTTTGTCGTC 57.859 40.909 0.00 0.00 35.67 4.20
3109 7673 3.812609 TGTATGCACACATTTTGTCGTCT 59.187 39.130 0.00 0.00 35.67 4.18
3110 7674 3.542712 ATGCACACATTTTGTCGTCTC 57.457 42.857 0.00 0.00 35.67 3.36
3111 7675 2.284190 TGCACACATTTTGTCGTCTCA 58.716 42.857 0.00 0.00 35.67 3.27
3112 7676 2.877786 TGCACACATTTTGTCGTCTCAT 59.122 40.909 0.00 0.00 35.67 2.90
3113 7677 3.228749 GCACACATTTTGTCGTCTCATG 58.771 45.455 0.00 0.00 35.67 3.07
3114 7678 3.058983 GCACACATTTTGTCGTCTCATGA 60.059 43.478 0.00 0.00 35.67 3.07
3115 7679 4.554526 GCACACATTTTGTCGTCTCATGAA 60.555 41.667 0.00 0.00 35.67 2.57
3144 7708 8.409358 AAAAATGTGAAAGAAGCTAGTGGTAT 57.591 30.769 0.00 0.00 0.00 2.73
3145 7709 6.992063 AATGTGAAAGAAGCTAGTGGTATG 57.008 37.500 0.00 0.00 0.00 2.39
3146 7710 4.832248 TGTGAAAGAAGCTAGTGGTATGG 58.168 43.478 0.00 0.00 0.00 2.74
3147 7711 4.192317 GTGAAAGAAGCTAGTGGTATGGG 58.808 47.826 0.00 0.00 0.00 4.00
3148 7712 3.844211 TGAAAGAAGCTAGTGGTATGGGT 59.156 43.478 0.00 0.00 0.00 4.51
3156 7720 1.378514 GTGGTATGGGTGGGTGCAG 60.379 63.158 0.00 0.00 0.00 4.41
3170 7734 3.264193 TGGGTGCAGAAGACAATACAGAT 59.736 43.478 0.00 0.00 0.00 2.90
3171 7735 4.263462 TGGGTGCAGAAGACAATACAGATT 60.263 41.667 0.00 0.00 0.00 2.40
3173 7737 5.294552 GGGTGCAGAAGACAATACAGATTAC 59.705 44.000 0.00 0.00 0.00 1.89
3174 7738 5.874810 GGTGCAGAAGACAATACAGATTACA 59.125 40.000 0.00 0.00 0.00 2.41
3175 7739 6.036517 GGTGCAGAAGACAATACAGATTACAG 59.963 42.308 0.00 0.00 0.00 2.74
3176 7740 6.813649 GTGCAGAAGACAATACAGATTACAGA 59.186 38.462 0.00 0.00 0.00 3.41
3177 7741 7.331934 GTGCAGAAGACAATACAGATTACAGAA 59.668 37.037 0.00 0.00 0.00 3.02
3178 7742 7.547019 TGCAGAAGACAATACAGATTACAGAAG 59.453 37.037 0.00 0.00 0.00 2.85
3179 7743 7.465245 GCAGAAGACAATACAGATTACAGAAGC 60.465 40.741 0.00 0.00 0.00 3.86
3180 7744 7.547019 CAGAAGACAATACAGATTACAGAAGCA 59.453 37.037 0.00 0.00 0.00 3.91
3181 7745 8.263640 AGAAGACAATACAGATTACAGAAGCAT 58.736 33.333 0.00 0.00 0.00 3.79
3182 7746 9.534565 GAAGACAATACAGATTACAGAAGCATA 57.465 33.333 0.00 0.00 0.00 3.14
3183 7747 9.539825 AAGACAATACAGATTACAGAAGCATAG 57.460 33.333 0.00 0.00 0.00 2.23
3184 7748 7.655328 AGACAATACAGATTACAGAAGCATAGC 59.345 37.037 0.00 0.00 0.00 2.97
3185 7749 7.275183 ACAATACAGATTACAGAAGCATAGCA 58.725 34.615 0.00 0.00 0.00 3.49
3187 7751 8.781196 CAATACAGATTACAGAAGCATAGCATT 58.219 33.333 0.00 0.00 0.00 3.56
3188 7752 6.857777 ACAGATTACAGAAGCATAGCATTC 57.142 37.500 0.00 0.00 0.00 2.67
3189 7753 6.351711 ACAGATTACAGAAGCATAGCATTCA 58.648 36.000 0.00 0.00 0.00 2.57
3190 7754 6.996879 ACAGATTACAGAAGCATAGCATTCAT 59.003 34.615 0.00 0.00 0.00 2.57
3192 7756 7.803659 CAGATTACAGAAGCATAGCATTCATTG 59.196 37.037 0.00 0.00 0.00 2.82
3194 7758 5.909621 ACAGAAGCATAGCATTCATTGTT 57.090 34.783 0.00 0.00 0.00 2.83
3195 7759 5.647589 ACAGAAGCATAGCATTCATTGTTG 58.352 37.500 0.00 0.00 0.00 3.33
3196 7760 5.184479 ACAGAAGCATAGCATTCATTGTTGT 59.816 36.000 0.00 0.00 0.00 3.32
3197 7761 6.097356 CAGAAGCATAGCATTCATTGTTGTT 58.903 36.000 0.00 0.00 0.00 2.83
3198 7762 6.034577 CAGAAGCATAGCATTCATTGTTGTTG 59.965 38.462 0.00 0.00 0.00 3.33
3229 7793 8.387354 CAGTGAACAAGTTTAATTTGTTTTCCC 58.613 33.333 17.25 7.50 45.82 3.97
3230 7794 8.318412 AGTGAACAAGTTTAATTTGTTTTCCCT 58.682 29.630 17.25 9.60 45.82 4.20
3232 7796 8.314751 TGAACAAGTTTAATTTGTTTTCCCTCA 58.685 29.630 17.25 8.84 45.82 3.86
3233 7797 9.157104 GAACAAGTTTAATTTGTTTTCCCTCAA 57.843 29.630 17.25 0.00 45.82 3.02
3239 7803 4.729227 ATTTGTTTTCCCTCAAACGTGT 57.271 36.364 0.00 0.00 39.19 4.49
3249 7813 3.066064 CCCTCAAACGTGTCACAAATTCA 59.934 43.478 3.42 0.00 0.00 2.57
3250 7814 4.261572 CCCTCAAACGTGTCACAAATTCAT 60.262 41.667 3.42 0.00 0.00 2.57
3251 7815 4.911610 CCTCAAACGTGTCACAAATTCATC 59.088 41.667 3.42 0.00 0.00 2.92
3252 7816 5.491635 TCAAACGTGTCACAAATTCATCA 57.508 34.783 3.42 0.00 0.00 3.07
3253 7817 6.070897 TCAAACGTGTCACAAATTCATCAT 57.929 33.333 3.42 0.00 0.00 2.45
3254 7818 6.142139 TCAAACGTGTCACAAATTCATCATC 58.858 36.000 3.42 0.00 0.00 2.92
3255 7819 5.687770 AACGTGTCACAAATTCATCATCA 57.312 34.783 3.42 0.00 0.00 3.07
3256 7820 5.885230 ACGTGTCACAAATTCATCATCAT 57.115 34.783 3.42 0.00 0.00 2.45
3257 7821 5.633927 ACGTGTCACAAATTCATCATCATG 58.366 37.500 3.42 0.00 0.00 3.07
3258 7822 5.181811 ACGTGTCACAAATTCATCATCATGT 59.818 36.000 3.42 0.00 0.00 3.21
3259 7823 6.371271 ACGTGTCACAAATTCATCATCATGTA 59.629 34.615 3.42 0.00 0.00 2.29
3260 7824 6.684131 CGTGTCACAAATTCATCATCATGTAC 59.316 38.462 3.42 0.00 0.00 2.90
3261 7825 7.413328 CGTGTCACAAATTCATCATCATGTACT 60.413 37.037 3.42 0.00 0.00 2.73
3262 7826 8.239314 GTGTCACAAATTCATCATCATGTACTT 58.761 33.333 0.00 0.00 0.00 2.24
3263 7827 8.238631 TGTCACAAATTCATCATCATGTACTTG 58.761 33.333 2.36 2.36 0.00 3.16
3264 7828 8.453320 GTCACAAATTCATCATCATGTACTTGA 58.547 33.333 13.28 13.28 0.00 3.02
3265 7829 9.181061 TCACAAATTCATCATCATGTACTTGAT 57.819 29.630 16.39 16.39 36.79 2.57
3266 7830 9.447040 CACAAATTCATCATCATGTACTTGATC 57.553 33.333 18.63 0.00 34.09 2.92
3267 7831 9.181061 ACAAATTCATCATCATGTACTTGATCA 57.819 29.630 18.63 9.24 34.09 2.92
3288 7852 5.496133 CAAGTGATCCTTGGCAAATCTAG 57.504 43.478 11.92 0.00 45.70 2.43
3289 7853 5.188434 CAAGTGATCCTTGGCAAATCTAGA 58.812 41.667 11.92 0.00 45.70 2.43
3290 7854 4.775236 AGTGATCCTTGGCAAATCTAGAC 58.225 43.478 11.92 3.96 0.00 2.59
3291 7855 3.557595 GTGATCCTTGGCAAATCTAGACG 59.442 47.826 11.92 0.00 0.00 4.18
3292 7856 3.450817 TGATCCTTGGCAAATCTAGACGA 59.549 43.478 11.92 0.00 0.00 4.20
3293 7857 4.101585 TGATCCTTGGCAAATCTAGACGAT 59.898 41.667 11.92 0.00 0.00 3.73
3294 7858 3.797039 TCCTTGGCAAATCTAGACGATG 58.203 45.455 0.00 0.00 31.20 3.84
3295 7859 2.874701 CCTTGGCAAATCTAGACGATGG 59.125 50.000 0.00 0.00 31.20 3.51
3296 7860 3.432186 CCTTGGCAAATCTAGACGATGGA 60.432 47.826 0.00 0.00 31.20 3.41
3297 7861 3.904800 TGGCAAATCTAGACGATGGAA 57.095 42.857 0.00 0.00 31.20 3.53
3298 7862 4.422073 TGGCAAATCTAGACGATGGAAT 57.578 40.909 0.00 0.00 31.20 3.01
3299 7863 4.780815 TGGCAAATCTAGACGATGGAATT 58.219 39.130 0.00 0.00 31.20 2.17
3300 7864 4.576053 TGGCAAATCTAGACGATGGAATTG 59.424 41.667 0.00 0.00 33.60 2.32
3301 7865 4.531332 GCAAATCTAGACGATGGAATTGC 58.469 43.478 12.72 12.72 44.69 3.56
3302 7866 4.555511 GCAAATCTAGACGATGGAATTGCC 60.556 45.833 15.35 0.00 44.98 4.52
3303 7867 4.696479 AATCTAGACGATGGAATTGCCT 57.304 40.909 0.00 0.00 37.63 4.75
3304 7868 4.696479 ATCTAGACGATGGAATTGCCTT 57.304 40.909 0.00 0.00 37.63 4.35
3305 7869 4.060038 TCTAGACGATGGAATTGCCTTC 57.940 45.455 0.00 0.00 37.45 3.46
3306 7870 2.787473 AGACGATGGAATTGCCTTCA 57.213 45.000 0.00 0.00 40.06 3.02
3307 7871 2.359900 AGACGATGGAATTGCCTTCAC 58.640 47.619 0.00 0.00 40.06 3.18
3308 7872 1.401905 GACGATGGAATTGCCTTCACC 59.598 52.381 0.00 0.00 40.06 4.02
3309 7873 0.740737 CGATGGAATTGCCTTCACCC 59.259 55.000 0.00 0.00 40.06 4.61
3310 7874 1.851304 GATGGAATTGCCTTCACCCA 58.149 50.000 0.00 0.00 39.88 4.51
3311 7875 2.178580 GATGGAATTGCCTTCACCCAA 58.821 47.619 0.00 0.00 39.88 4.12
3312 7876 2.094100 TGGAATTGCCTTCACCCAAA 57.906 45.000 0.00 0.00 35.41 3.28
3313 7877 2.618794 TGGAATTGCCTTCACCCAAAT 58.381 42.857 0.00 0.00 35.41 2.32
3314 7878 2.978278 TGGAATTGCCTTCACCCAAATT 59.022 40.909 0.00 0.00 35.41 1.82
3315 7879 3.007831 TGGAATTGCCTTCACCCAAATTC 59.992 43.478 0.00 0.00 35.41 2.17
3316 7880 3.599343 GAATTGCCTTCACCCAAATTCC 58.401 45.455 0.00 0.00 33.78 3.01
3317 7881 2.094100 TTGCCTTCACCCAAATTCCA 57.906 45.000 0.00 0.00 0.00 3.53
3318 7882 1.337118 TGCCTTCACCCAAATTCCAC 58.663 50.000 0.00 0.00 0.00 4.02
3319 7883 0.608130 GCCTTCACCCAAATTCCACC 59.392 55.000 0.00 0.00 0.00 4.61
3320 7884 2.008242 CCTTCACCCAAATTCCACCA 57.992 50.000 0.00 0.00 0.00 4.17
3321 7885 1.618343 CCTTCACCCAAATTCCACCAC 59.382 52.381 0.00 0.00 0.00 4.16
3322 7886 2.597455 CTTCACCCAAATTCCACCACT 58.403 47.619 0.00 0.00 0.00 4.00
3323 7887 2.765689 TCACCCAAATTCCACCACTT 57.234 45.000 0.00 0.00 0.00 3.16
3324 7888 2.593026 TCACCCAAATTCCACCACTTC 58.407 47.619 0.00 0.00 0.00 3.01
3325 7889 1.618343 CACCCAAATTCCACCACTTCC 59.382 52.381 0.00 0.00 0.00 3.46
3326 7890 1.503347 ACCCAAATTCCACCACTTCCT 59.497 47.619 0.00 0.00 0.00 3.36
3327 7891 2.090775 ACCCAAATTCCACCACTTCCTT 60.091 45.455 0.00 0.00 0.00 3.36
3328 7892 2.562738 CCCAAATTCCACCACTTCCTTC 59.437 50.000 0.00 0.00 0.00 3.46
3329 7893 3.500343 CCAAATTCCACCACTTCCTTCT 58.500 45.455 0.00 0.00 0.00 2.85
3330 7894 3.507622 CCAAATTCCACCACTTCCTTCTC 59.492 47.826 0.00 0.00 0.00 2.87
3331 7895 2.770164 ATTCCACCACTTCCTTCTCG 57.230 50.000 0.00 0.00 0.00 4.04
3332 7896 1.420430 TTCCACCACTTCCTTCTCGT 58.580 50.000 0.00 0.00 0.00 4.18
3333 7897 1.420430 TCCACCACTTCCTTCTCGTT 58.580 50.000 0.00 0.00 0.00 3.85
3334 7898 1.070134 TCCACCACTTCCTTCTCGTTG 59.930 52.381 0.00 0.00 0.00 4.10
3335 7899 1.512926 CACCACTTCCTTCTCGTTGG 58.487 55.000 0.00 0.00 0.00 3.77
3336 7900 0.396811 ACCACTTCCTTCTCGTTGGG 59.603 55.000 0.00 0.00 0.00 4.12
3337 7901 0.955919 CCACTTCCTTCTCGTTGGGC 60.956 60.000 0.00 0.00 0.00 5.36
3338 7902 0.955919 CACTTCCTTCTCGTTGGGCC 60.956 60.000 0.00 0.00 0.00 5.80
3339 7903 1.741770 CTTCCTTCTCGTTGGGCCG 60.742 63.158 0.00 0.00 0.00 6.13
3340 7904 2.450479 CTTCCTTCTCGTTGGGCCGT 62.450 60.000 0.00 0.00 0.00 5.68
3341 7905 2.725203 TTCCTTCTCGTTGGGCCGTG 62.725 60.000 0.00 0.00 0.00 4.94
3342 7906 2.030562 CTTCTCGTTGGGCCGTGT 59.969 61.111 0.00 0.00 0.00 4.49
3343 7907 1.290955 CTTCTCGTTGGGCCGTGTA 59.709 57.895 0.00 0.00 0.00 2.90
3344 7908 0.736325 CTTCTCGTTGGGCCGTGTAG 60.736 60.000 0.00 0.00 0.00 2.74
3345 7909 1.466025 TTCTCGTTGGGCCGTGTAGT 61.466 55.000 0.00 0.00 0.00 2.73
3346 7910 0.608856 TCTCGTTGGGCCGTGTAGTA 60.609 55.000 0.00 0.00 0.00 1.82
3347 7911 0.244450 CTCGTTGGGCCGTGTAGTAA 59.756 55.000 0.00 0.00 0.00 2.24
3348 7912 0.896923 TCGTTGGGCCGTGTAGTAAT 59.103 50.000 0.00 0.00 0.00 1.89
3349 7913 1.275856 TCGTTGGGCCGTGTAGTAATT 59.724 47.619 0.00 0.00 0.00 1.40
3350 7914 1.662122 CGTTGGGCCGTGTAGTAATTC 59.338 52.381 0.00 0.00 0.00 2.17
3351 7915 2.702261 GTTGGGCCGTGTAGTAATTCA 58.298 47.619 0.00 0.00 0.00 2.57
3352 7916 2.676342 GTTGGGCCGTGTAGTAATTCAG 59.324 50.000 0.00 0.00 0.00 3.02
3353 7917 1.903860 TGGGCCGTGTAGTAATTCAGT 59.096 47.619 0.00 0.00 0.00 3.41
3354 7918 2.303600 TGGGCCGTGTAGTAATTCAGTT 59.696 45.455 0.00 0.00 0.00 3.16
3355 7919 3.244630 TGGGCCGTGTAGTAATTCAGTTT 60.245 43.478 0.00 0.00 0.00 2.66
3356 7920 3.754850 GGGCCGTGTAGTAATTCAGTTTT 59.245 43.478 0.00 0.00 0.00 2.43
3357 7921 4.379082 GGGCCGTGTAGTAATTCAGTTTTG 60.379 45.833 0.00 0.00 0.00 2.44
3358 7922 4.156182 GCCGTGTAGTAATTCAGTTTTGC 58.844 43.478 0.00 0.00 0.00 3.68
3359 7923 4.719040 CCGTGTAGTAATTCAGTTTTGCC 58.281 43.478 0.00 0.00 0.00 4.52
3360 7924 4.214545 CCGTGTAGTAATTCAGTTTTGCCA 59.785 41.667 0.00 0.00 0.00 4.92
3361 7925 5.144359 CGTGTAGTAATTCAGTTTTGCCAC 58.856 41.667 0.00 0.00 0.00 5.01
3362 7926 5.277586 CGTGTAGTAATTCAGTTTTGCCACA 60.278 40.000 0.00 0.00 0.00 4.17
3363 7927 6.567701 CGTGTAGTAATTCAGTTTTGCCACAT 60.568 38.462 0.00 0.00 0.00 3.21
3364 7928 6.801862 GTGTAGTAATTCAGTTTTGCCACATC 59.198 38.462 0.00 0.00 0.00 3.06
3365 7929 6.488344 TGTAGTAATTCAGTTTTGCCACATCA 59.512 34.615 0.00 0.00 0.00 3.07
3366 7930 6.017400 AGTAATTCAGTTTTGCCACATCAG 57.983 37.500 0.00 0.00 0.00 2.90
3367 7931 2.798976 TTCAGTTTTGCCACATCAGC 57.201 45.000 0.00 0.00 0.00 4.26
3368 7932 0.592637 TCAGTTTTGCCACATCAGCG 59.407 50.000 0.00 0.00 0.00 5.18
3369 7933 0.592637 CAGTTTTGCCACATCAGCGA 59.407 50.000 0.00 0.00 0.00 4.93
3370 7934 0.593128 AGTTTTGCCACATCAGCGAC 59.407 50.000 0.00 0.00 0.00 5.19
3371 7935 0.387239 GTTTTGCCACATCAGCGACC 60.387 55.000 0.00 0.00 0.00 4.79
3372 7936 0.821301 TTTTGCCACATCAGCGACCA 60.821 50.000 0.00 0.00 0.00 4.02
3373 7937 1.514678 TTTGCCACATCAGCGACCAC 61.515 55.000 0.00 0.00 0.00 4.16
3374 7938 3.127533 GCCACATCAGCGACCACC 61.128 66.667 0.00 0.00 0.00 4.61
3375 7939 2.815211 CCACATCAGCGACCACCG 60.815 66.667 0.00 0.00 42.21 4.94
3376 7940 2.261361 CACATCAGCGACCACCGA 59.739 61.111 0.00 0.00 41.76 4.69
3377 7941 1.807165 CACATCAGCGACCACCGAG 60.807 63.158 0.00 0.00 41.76 4.63
3378 7942 1.977009 ACATCAGCGACCACCGAGA 60.977 57.895 0.00 0.00 41.76 4.04
3379 7943 1.517257 CATCAGCGACCACCGAGAC 60.517 63.158 0.00 0.00 41.76 3.36
3380 7944 1.977009 ATCAGCGACCACCGAGACA 60.977 57.895 0.00 0.00 41.76 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 2.283529 CGTGGGCCTGTCACCTACT 61.284 63.158 4.53 0.00 36.57 2.57
65 66 2.118732 TCGTGGGCCTGTCACCTA 59.881 61.111 4.53 0.00 0.00 3.08
345 346 3.465403 CACCTCCCTCCGCCTCTG 61.465 72.222 0.00 0.00 0.00 3.35
346 347 4.787280 CCACCTCCCTCCGCCTCT 62.787 72.222 0.00 0.00 0.00 3.69
357 358 4.704833 TCAAGCTGCCGCCACCTC 62.705 66.667 0.00 0.00 36.60 3.85
358 359 4.711949 CTCAAGCTGCCGCCACCT 62.712 66.667 0.00 0.00 36.60 4.00
366 367 4.087892 TCCCTCCGCTCAAGCTGC 62.088 66.667 0.00 0.00 39.32 5.25
367 368 2.186384 CTCCCTCCGCTCAAGCTG 59.814 66.667 0.00 0.00 39.32 4.24
368 369 3.080121 CCTCCCTCCGCTCAAGCT 61.080 66.667 0.00 0.00 39.32 3.74
369 370 3.394836 ACCTCCCTCCGCTCAAGC 61.395 66.667 0.00 0.00 37.78 4.01
370 371 2.581354 CACCTCCCTCCGCTCAAG 59.419 66.667 0.00 0.00 0.00 3.02
371 372 3.003173 CCACCTCCCTCCGCTCAA 61.003 66.667 0.00 0.00 0.00 3.02
382 383 4.704833 TCAAGCTGCCGCCACCTC 62.705 66.667 0.00 0.00 36.60 3.85
383 384 4.711949 CTCAAGCTGCCGCCACCT 62.712 66.667 0.00 0.00 36.60 4.00
390 391 4.099170 CTGCACGCTCAAGCTGCC 62.099 66.667 17.69 6.51 41.28 4.85
391 392 2.510190 CTTCTGCACGCTCAAGCTGC 62.510 60.000 15.17 15.17 41.86 5.25
392 393 0.947660 TCTTCTGCACGCTCAAGCTG 60.948 55.000 0.00 0.00 39.32 4.24
393 394 0.669932 CTCTTCTGCACGCTCAAGCT 60.670 55.000 0.00 0.00 39.32 3.74
394 395 0.668706 TCTCTTCTGCACGCTCAAGC 60.669 55.000 0.00 0.00 37.78 4.01
395 396 1.066914 GTCTCTTCTGCACGCTCAAG 58.933 55.000 0.00 0.00 0.00 3.02
396 397 0.319900 GGTCTCTTCTGCACGCTCAA 60.320 55.000 0.00 0.00 0.00 3.02
397 398 1.290324 GGTCTCTTCTGCACGCTCA 59.710 57.895 0.00 0.00 0.00 4.26
398 399 1.446966 GGGTCTCTTCTGCACGCTC 60.447 63.158 0.00 0.00 0.00 5.03
399 400 2.659610 GGGTCTCTTCTGCACGCT 59.340 61.111 0.00 0.00 0.00 5.07
400 401 2.435059 GGGGTCTCTTCTGCACGC 60.435 66.667 0.00 0.00 0.00 5.34
401 402 2.125912 CGGGGTCTCTTCTGCACG 60.126 66.667 0.00 0.00 0.00 5.34
402 403 1.079750 GACGGGGTCTCTTCTGCAC 60.080 63.158 0.00 0.00 0.00 4.57
403 404 0.832135 AAGACGGGGTCTCTTCTGCA 60.832 55.000 0.00 0.00 42.59 4.41
404 405 0.108567 GAAGACGGGGTCTCTTCTGC 60.109 60.000 5.68 0.00 42.59 4.26
405 406 0.171455 CGAAGACGGGGTCTCTTCTG 59.829 60.000 10.04 2.32 42.59 3.02
406 407 0.251253 ACGAAGACGGGGTCTCTTCT 60.251 55.000 10.04 0.00 42.59 2.85
407 408 0.170784 GACGAAGACGGGGTCTCTTC 59.829 60.000 0.00 3.31 42.59 2.87
408 409 1.249469 GGACGAAGACGGGGTCTCTT 61.249 60.000 0.00 0.00 42.59 2.85
409 410 1.678300 GGACGAAGACGGGGTCTCT 60.678 63.158 0.00 0.00 42.59 3.10
410 411 1.655885 GAGGACGAAGACGGGGTCTC 61.656 65.000 0.00 0.00 42.59 3.36
411 412 1.678300 GAGGACGAAGACGGGGTCT 60.678 63.158 0.00 0.00 45.64 3.85
412 413 1.530013 TTGAGGACGAAGACGGGGTC 61.530 60.000 0.00 0.00 44.46 4.46
413 414 1.532316 TTGAGGACGAAGACGGGGT 60.532 57.895 0.00 0.00 44.46 4.95
414 415 1.080025 GTTGAGGACGAAGACGGGG 60.080 63.158 0.00 0.00 44.46 5.73
921 1110 3.243274 CTAGCTCCCGCGACGCTAG 62.243 68.421 25.36 25.36 44.80 3.42
922 1111 3.277602 CTAGCTCCCGCGACGCTA 61.278 66.667 19.02 15.13 42.32 4.26
925 1114 3.823330 AACCTAGCTCCCGCGACG 61.823 66.667 8.23 0.00 42.32 5.12
926 1115 2.202756 CAACCTAGCTCCCGCGAC 60.203 66.667 8.23 0.00 42.32 5.19
927 1116 2.361992 TCAACCTAGCTCCCGCGA 60.362 61.111 8.23 0.00 42.32 5.87
928 1117 2.202756 GTCAACCTAGCTCCCGCG 60.203 66.667 0.00 0.00 42.32 6.46
929 1118 1.153549 CAGTCAACCTAGCTCCCGC 60.154 63.158 0.00 0.00 0.00 6.13
930 1119 1.517832 CCAGTCAACCTAGCTCCCG 59.482 63.158 0.00 0.00 0.00 5.14
931 1120 1.627297 CCCCAGTCAACCTAGCTCCC 61.627 65.000 0.00 0.00 0.00 4.30
932 1121 0.617820 TCCCCAGTCAACCTAGCTCC 60.618 60.000 0.00 0.00 0.00 4.70
933 1122 0.827368 CTCCCCAGTCAACCTAGCTC 59.173 60.000 0.00 0.00 0.00 4.09
934 1123 0.413832 TCTCCCCAGTCAACCTAGCT 59.586 55.000 0.00 0.00 0.00 3.32
935 1124 1.501582 ATCTCCCCAGTCAACCTAGC 58.498 55.000 0.00 0.00 0.00 3.42
936 1125 3.235200 CCTATCTCCCCAGTCAACCTAG 58.765 54.545 0.00 0.00 0.00 3.02
937 1126 2.590611 ACCTATCTCCCCAGTCAACCTA 59.409 50.000 0.00 0.00 0.00 3.08
938 1127 1.366435 ACCTATCTCCCCAGTCAACCT 59.634 52.381 0.00 0.00 0.00 3.50
939 1128 1.880941 ACCTATCTCCCCAGTCAACC 58.119 55.000 0.00 0.00 0.00 3.77
941 1130 2.838202 GTCAACCTATCTCCCCAGTCAA 59.162 50.000 0.00 0.00 0.00 3.18
944 1133 2.472029 CAGTCAACCTATCTCCCCAGT 58.528 52.381 0.00 0.00 0.00 4.00
953 1142 3.210074 ACCTATCTCCCCAGTCAACCTAT 59.790 47.826 0.00 0.00 0.00 2.57
954 1143 2.590611 ACCTATCTCCCCAGTCAACCTA 59.409 50.000 0.00 0.00 0.00 3.08
956 1145 1.763545 GACCTATCTCCCCAGTCAACC 59.236 57.143 0.00 0.00 0.00 3.77
957 1146 1.409427 CGACCTATCTCCCCAGTCAAC 59.591 57.143 0.00 0.00 0.00 3.18
958 1147 1.286849 TCGACCTATCTCCCCAGTCAA 59.713 52.381 0.00 0.00 0.00 3.18
959 1148 0.924090 TCGACCTATCTCCCCAGTCA 59.076 55.000 0.00 0.00 0.00 3.41
960 1149 2.296073 ATCGACCTATCTCCCCAGTC 57.704 55.000 0.00 0.00 0.00 3.51
961 1150 2.777459 AATCGACCTATCTCCCCAGT 57.223 50.000 0.00 0.00 0.00 4.00
962 1151 3.235200 AGAAATCGACCTATCTCCCCAG 58.765 50.000 0.00 0.00 0.00 4.45
963 1152 3.117093 AGAGAAATCGACCTATCTCCCCA 60.117 47.826 12.39 0.00 39.26 4.96
968 1157 6.361433 TCTTGAGAGAGAAATCGACCTATCT 58.639 40.000 7.81 7.81 34.09 1.98
972 1161 4.952957 TGATCTTGAGAGAGAAATCGACCT 59.047 41.667 0.00 0.00 34.85 3.85
1068 1263 2.910479 ACGCGGCCGGATATCTCA 60.910 61.111 29.38 0.00 39.22 3.27
1113 1308 4.600576 TGCTTGCAGACGCCGTGA 62.601 61.111 0.00 0.00 37.32 4.35
1118 1313 2.505557 GCCATTGCTTGCAGACGC 60.506 61.111 0.00 0.00 34.50 5.19
1297 1495 0.179018 GTCCTGCACACCCAGTTTCT 60.179 55.000 0.00 0.00 0.00 2.52
1323 1521 3.075005 AGATACCACACGCCGGCT 61.075 61.111 26.68 8.92 0.00 5.52
1467 1672 5.189736 TCTTCCATTGTAGCTGTACAGGAAT 59.810 40.000 23.95 1.34 40.28 3.01
1487 1752 2.716217 CCCTGAACCATCCACTTCTTC 58.284 52.381 0.00 0.00 0.00 2.87
1488 1753 1.272147 GCCCTGAACCATCCACTTCTT 60.272 52.381 0.00 0.00 0.00 2.52
1489 1754 0.329596 GCCCTGAACCATCCACTTCT 59.670 55.000 0.00 0.00 0.00 2.85
1571 1840 3.659786 CAGAACTCACGGTACCAAATCA 58.340 45.455 13.54 0.00 0.00 2.57
1743 2021 1.476891 GACTCGAGGACATGGCTGTAA 59.523 52.381 18.41 0.00 35.14 2.41
1777 2055 2.195567 CCTGCACAACCACCCACAG 61.196 63.158 0.00 0.00 0.00 3.66
1791 2069 3.730761 CTGCGCAACTGGACCTGC 61.731 66.667 13.05 0.00 35.14 4.85
1879 2157 4.052229 CTTCTCCGGTGGCGACGT 62.052 66.667 0.00 0.00 0.00 4.34
1884 2162 1.653151 GTGTATTCTTCTCCGGTGGC 58.347 55.000 0.00 0.00 0.00 5.01
1885 2163 1.553248 TGGTGTATTCTTCTCCGGTGG 59.447 52.381 0.00 0.00 0.00 4.61
1902 2183 2.052047 CTTTCCTCACCCACCGTGGT 62.052 60.000 16.55 2.01 43.23 4.16
1903 2184 1.302511 CTTTCCTCACCCACCGTGG 60.303 63.158 10.95 10.95 43.23 4.94
1995 2277 3.384532 GACGTCCCTACCGCCCAA 61.385 66.667 3.51 0.00 0.00 4.12
2012 2294 3.740397 TAGACACACCCGCCGTCG 61.740 66.667 0.00 0.00 34.80 5.12
2050 2332 2.935955 GTTCACGTGGCAAGTCCG 59.064 61.111 17.00 0.00 37.80 4.79
2105 2391 5.312120 AGTACCAGTACTTGATCTTGTCG 57.688 43.478 4.61 0.00 43.35 4.35
2193 2479 1.449070 GTTGGGGTAGTAGCCACGC 60.449 63.158 19.76 3.63 37.54 5.34
2252 2541 5.993055 TGATGTGGCTATGATTTCAAGAGA 58.007 37.500 0.00 0.00 0.00 3.10
2255 2856 6.318144 ACTCTTGATGTGGCTATGATTTCAAG 59.682 38.462 0.00 0.00 39.76 3.02
2258 2859 6.690194 AACTCTTGATGTGGCTATGATTTC 57.310 37.500 0.00 0.00 0.00 2.17
2263 2864 5.431765 AGGTAAACTCTTGATGTGGCTATG 58.568 41.667 0.00 0.00 0.00 2.23
2266 2867 4.373156 AAGGTAAACTCTTGATGTGGCT 57.627 40.909 0.00 0.00 0.00 4.75
2289 2890 8.540507 TGCTTATGAAGAGTCTCTAGGTTATT 57.459 34.615 1.88 0.00 0.00 1.40
2290 2891 8.719645 ATGCTTATGAAGAGTCTCTAGGTTAT 57.280 34.615 1.88 0.00 0.00 1.89
2394 3035 0.179089 ACTAGATCGGCTGCTGCTTG 60.179 55.000 15.64 8.60 39.59 4.01
2494 3363 2.124193 TGGAAGATGCATGGCCGG 60.124 61.111 2.46 0.00 0.00 6.13
2499 3368 3.488721 GCTACTTTGCTGGAAGATGCATG 60.489 47.826 2.46 0.00 39.07 4.06
2500 3369 2.686915 GCTACTTTGCTGGAAGATGCAT 59.313 45.455 0.00 0.00 39.07 3.96
2501 3370 2.086869 GCTACTTTGCTGGAAGATGCA 58.913 47.619 0.00 0.00 34.07 3.96
2502 3371 1.063174 CGCTACTTTGCTGGAAGATGC 59.937 52.381 2.77 0.00 34.07 3.91
2570 3524 6.072733 GTGTGCAAACAATACATTTCATTGC 58.927 36.000 0.88 0.00 41.39 3.56
2579 3533 4.061596 TCGAGATGTGTGCAAACAATACA 58.938 39.130 15.04 0.81 32.81 2.29
2582 3536 4.566545 TTTCGAGATGTGTGCAAACAAT 57.433 36.364 15.04 5.74 32.81 2.71
2659 3656 1.345415 CAGCCAATTCCCCCAATATGC 59.655 52.381 0.00 0.00 0.00 3.14
2661 3658 3.929245 ATCAGCCAATTCCCCCAATAT 57.071 42.857 0.00 0.00 0.00 1.28
2664 3661 2.314549 ACTTATCAGCCAATTCCCCCAA 59.685 45.455 0.00 0.00 0.00 4.12
2666 3663 2.755952 ACTTATCAGCCAATTCCCCC 57.244 50.000 0.00 0.00 0.00 5.40
2713 6981 9.020731 TCAACATCTCTATATATACAGCCGAAA 57.979 33.333 0.00 0.00 0.00 3.46
2714 6982 8.575649 TCAACATCTCTATATATACAGCCGAA 57.424 34.615 0.00 0.00 0.00 4.30
2716 6984 8.462811 ACTTCAACATCTCTATATATACAGCCG 58.537 37.037 0.00 0.00 0.00 5.52
2717 6985 9.579768 CACTTCAACATCTCTATATATACAGCC 57.420 37.037 0.00 0.00 0.00 4.85
2741 7031 1.463444 GTGCGTACCCAACAGAATCAC 59.537 52.381 0.00 0.00 0.00 3.06
2748 7038 4.237207 TGCGGTGCGTACCCAACA 62.237 61.111 17.62 10.16 44.53 3.33
2877 7431 3.813529 GTCGAGTGACCAAAATCAAGG 57.186 47.619 0.00 0.00 39.30 3.61
2889 7443 4.256110 TCACTTACTATTCGGTCGAGTGA 58.744 43.478 0.00 0.00 38.72 3.41
2890 7444 4.331992 TCTCACTTACTATTCGGTCGAGTG 59.668 45.833 0.00 0.00 36.11 3.51
2891 7445 4.511527 TCTCACTTACTATTCGGTCGAGT 58.488 43.478 0.00 0.00 0.00 4.18
2897 7451 7.364200 CCTTGTAGATCTCACTTACTATTCGG 58.636 42.308 0.00 0.00 0.00 4.30
2920 7474 2.044946 GCCAACCTTGCGATCCCT 60.045 61.111 0.00 0.00 0.00 4.20
2952 7506 4.378770 CCAAAATCAACCACTCGTCATCTG 60.379 45.833 0.00 0.00 0.00 2.90
2953 7507 3.753272 CCAAAATCAACCACTCGTCATCT 59.247 43.478 0.00 0.00 0.00 2.90
2988 7545 6.151144 GGTTCAGTTTAACAGTGCCATATTCT 59.849 38.462 0.00 0.00 0.00 2.40
3045 7608 9.774742 GCTCGAGAAAAATACATAGAAACAAAT 57.225 29.630 18.75 0.00 0.00 2.32
3046 7609 8.779303 TGCTCGAGAAAAATACATAGAAACAAA 58.221 29.630 18.75 0.00 0.00 2.83
3059 7623 5.007385 ACTATACCGTGCTCGAGAAAAAT 57.993 39.130 18.75 3.76 39.71 1.82
3068 7632 2.182825 CACGACAACTATACCGTGCTC 58.817 52.381 0.00 0.00 44.24 4.26
3121 7685 6.375455 CCATACCACTAGCTTCTTTCACATTT 59.625 38.462 0.00 0.00 0.00 2.32
3123 7687 5.431765 CCATACCACTAGCTTCTTTCACAT 58.568 41.667 0.00 0.00 0.00 3.21
3131 7695 1.141053 CCCACCCATACCACTAGCTTC 59.859 57.143 0.00 0.00 0.00 3.86
3136 7700 0.547954 TGCACCCACCCATACCACTA 60.548 55.000 0.00 0.00 0.00 2.74
3144 7708 1.640593 TTGTCTTCTGCACCCACCCA 61.641 55.000 0.00 0.00 0.00 4.51
3145 7709 0.251341 ATTGTCTTCTGCACCCACCC 60.251 55.000 0.00 0.00 0.00 4.61
3146 7710 2.084546 GTATTGTCTTCTGCACCCACC 58.915 52.381 0.00 0.00 0.00 4.61
3147 7711 2.744202 CTGTATTGTCTTCTGCACCCAC 59.256 50.000 0.00 0.00 0.00 4.61
3148 7712 2.637382 TCTGTATTGTCTTCTGCACCCA 59.363 45.455 0.00 0.00 0.00 4.51
3156 7720 7.834068 TGCTTCTGTAATCTGTATTGTCTTC 57.166 36.000 0.00 0.00 0.00 2.87
3170 7734 7.094248 ACAACAATGAATGCTATGCTTCTGTAA 60.094 33.333 0.00 0.00 0.00 2.41
3171 7735 6.375174 ACAACAATGAATGCTATGCTTCTGTA 59.625 34.615 0.00 0.00 0.00 2.74
3173 7737 5.647589 ACAACAATGAATGCTATGCTTCTG 58.352 37.500 0.00 0.00 0.00 3.02
3174 7738 5.909621 ACAACAATGAATGCTATGCTTCT 57.090 34.783 0.00 0.00 0.00 2.85
3175 7739 5.865552 ACAACAACAATGAATGCTATGCTTC 59.134 36.000 0.00 0.00 0.00 3.86
3176 7740 5.786311 ACAACAACAATGAATGCTATGCTT 58.214 33.333 0.00 0.00 0.00 3.91
3177 7741 5.395682 ACAACAACAATGAATGCTATGCT 57.604 34.783 0.00 0.00 0.00 3.79
3178 7742 7.116090 TGTTTACAACAACAATGAATGCTATGC 59.884 33.333 0.00 0.00 38.72 3.14
3179 7743 8.518151 TGTTTACAACAACAATGAATGCTATG 57.482 30.769 0.00 0.00 38.72 2.23
3180 7744 8.359642 ACTGTTTACAACAACAATGAATGCTAT 58.640 29.630 0.00 0.00 41.61 2.97
3181 7745 7.647318 CACTGTTTACAACAACAATGAATGCTA 59.353 33.333 0.00 0.00 41.61 3.49
3182 7746 6.476380 CACTGTTTACAACAACAATGAATGCT 59.524 34.615 0.00 0.00 41.61 3.79
3183 7747 6.475076 TCACTGTTTACAACAACAATGAATGC 59.525 34.615 0.00 0.00 39.34 3.56
3184 7748 7.984002 TCACTGTTTACAACAACAATGAATG 57.016 32.000 0.00 0.00 39.34 2.67
3187 7751 6.914259 TGTTCACTGTTTACAACAACAATGA 58.086 32.000 0.00 0.00 40.26 2.57
3188 7752 7.328249 ACTTGTTCACTGTTTACAACAACAATG 59.672 33.333 11.19 0.00 41.61 2.82
3189 7753 7.375053 ACTTGTTCACTGTTTACAACAACAAT 58.625 30.769 11.19 4.05 41.61 2.71
3190 7754 6.740110 ACTTGTTCACTGTTTACAACAACAA 58.260 32.000 10.67 10.67 41.61 2.83
3192 7756 7.631915 AAACTTGTTCACTGTTTACAACAAC 57.368 32.000 1.54 0.00 41.61 3.32
3194 7758 9.915629 AATTAAACTTGTTCACTGTTTACAACA 57.084 25.926 0.00 0.00 36.35 3.33
3197 7761 9.915629 ACAAATTAAACTTGTTCACTGTTTACA 57.084 25.926 0.00 0.00 36.35 2.41
3203 7767 8.387354 GGGAAAACAAATTAAACTTGTTCACTG 58.613 33.333 15.52 0.00 44.25 3.66
3219 7783 3.506455 TGACACGTTTGAGGGAAAACAAA 59.494 39.130 0.00 0.00 39.53 2.83
3222 7786 2.420722 TGTGACACGTTTGAGGGAAAAC 59.579 45.455 0.22 0.00 36.81 2.43
3225 7789 2.404923 TTGTGACACGTTTGAGGGAA 57.595 45.000 0.22 0.00 0.00 3.97
3226 7790 2.404923 TTTGTGACACGTTTGAGGGA 57.595 45.000 0.22 0.00 0.00 4.20
3227 7791 3.066064 TGAATTTGTGACACGTTTGAGGG 59.934 43.478 0.22 0.00 0.00 4.30
3229 7793 5.509771 TGATGAATTTGTGACACGTTTGAG 58.490 37.500 0.22 0.00 0.00 3.02
3230 7794 5.491635 TGATGAATTTGTGACACGTTTGA 57.508 34.783 0.22 0.00 0.00 2.69
3232 7796 6.070897 TGATGATGAATTTGTGACACGTTT 57.929 33.333 0.22 0.00 0.00 3.60
3233 7797 5.687770 TGATGATGAATTTGTGACACGTT 57.312 34.783 0.22 0.00 0.00 3.99
3239 7803 8.564509 TCAAGTACATGATGATGAATTTGTGA 57.435 30.769 0.00 0.00 33.36 3.58
3267 7831 5.189180 GTCTAGATTTGCCAAGGATCACTT 58.811 41.667 0.00 0.00 41.00 3.16
3268 7832 4.681781 CGTCTAGATTTGCCAAGGATCACT 60.682 45.833 0.00 0.00 0.00 3.41
3269 7833 3.557595 CGTCTAGATTTGCCAAGGATCAC 59.442 47.826 0.00 0.00 0.00 3.06
3270 7834 3.450817 TCGTCTAGATTTGCCAAGGATCA 59.549 43.478 0.00 0.00 0.00 2.92
3271 7835 4.060038 TCGTCTAGATTTGCCAAGGATC 57.940 45.455 0.00 0.00 0.00 3.36
3272 7836 4.384056 CATCGTCTAGATTTGCCAAGGAT 58.616 43.478 0.00 0.00 37.52 3.24
3273 7837 3.432186 CCATCGTCTAGATTTGCCAAGGA 60.432 47.826 0.00 0.00 37.52 3.36
3274 7838 2.874701 CCATCGTCTAGATTTGCCAAGG 59.125 50.000 0.00 0.00 37.52 3.61
3275 7839 3.797039 TCCATCGTCTAGATTTGCCAAG 58.203 45.455 0.00 0.00 37.52 3.61
3276 7840 3.904800 TCCATCGTCTAGATTTGCCAA 57.095 42.857 0.00 0.00 37.52 4.52
3277 7841 3.904800 TTCCATCGTCTAGATTTGCCA 57.095 42.857 0.00 0.00 37.52 4.92
3278 7842 4.555511 GCAATTCCATCGTCTAGATTTGCC 60.556 45.833 0.00 0.00 40.67 4.52
3279 7843 4.531332 GCAATTCCATCGTCTAGATTTGC 58.469 43.478 0.00 0.00 40.17 3.68
3280 7844 4.818546 AGGCAATTCCATCGTCTAGATTTG 59.181 41.667 0.00 0.00 37.52 2.32
3281 7845 5.041191 AGGCAATTCCATCGTCTAGATTT 57.959 39.130 0.00 0.00 37.52 2.17
3282 7846 4.696479 AGGCAATTCCATCGTCTAGATT 57.304 40.909 0.00 0.00 37.52 2.40
3283 7847 4.101585 TGAAGGCAATTCCATCGTCTAGAT 59.898 41.667 0.00 0.00 35.36 1.98
3284 7848 3.450817 TGAAGGCAATTCCATCGTCTAGA 59.549 43.478 0.00 0.00 35.36 2.43
3285 7849 3.557595 GTGAAGGCAATTCCATCGTCTAG 59.442 47.826 0.00 0.00 35.36 2.43
3286 7850 3.531538 GTGAAGGCAATTCCATCGTCTA 58.468 45.455 0.00 0.00 35.36 2.59
3287 7851 2.359900 GTGAAGGCAATTCCATCGTCT 58.640 47.619 0.00 0.00 35.36 4.18
3288 7852 1.401905 GGTGAAGGCAATTCCATCGTC 59.598 52.381 0.00 0.00 35.36 4.20
3289 7853 1.463674 GGTGAAGGCAATTCCATCGT 58.536 50.000 0.00 0.00 35.36 3.73
3290 7854 0.740737 GGGTGAAGGCAATTCCATCG 59.259 55.000 0.00 0.00 35.36 3.84
3291 7855 1.851304 TGGGTGAAGGCAATTCCATC 58.149 50.000 0.00 0.00 37.08 3.51
3292 7856 2.323999 TTGGGTGAAGGCAATTCCAT 57.676 45.000 0.00 0.00 37.08 3.41
3293 7857 2.094100 TTTGGGTGAAGGCAATTCCA 57.906 45.000 0.00 0.00 37.08 3.53
3294 7858 3.599343 GAATTTGGGTGAAGGCAATTCC 58.401 45.455 0.00 0.00 37.08 3.01
3295 7859 3.007831 TGGAATTTGGGTGAAGGCAATTC 59.992 43.478 0.00 0.00 38.50 2.17
3296 7860 2.978278 TGGAATTTGGGTGAAGGCAATT 59.022 40.909 0.00 0.00 0.00 2.32
3297 7861 2.302733 GTGGAATTTGGGTGAAGGCAAT 59.697 45.455 0.00 0.00 0.00 3.56
3298 7862 1.691434 GTGGAATTTGGGTGAAGGCAA 59.309 47.619 0.00 0.00 0.00 4.52
3299 7863 1.337118 GTGGAATTTGGGTGAAGGCA 58.663 50.000 0.00 0.00 0.00 4.75
3300 7864 0.608130 GGTGGAATTTGGGTGAAGGC 59.392 55.000 0.00 0.00 0.00 4.35
3301 7865 1.618343 GTGGTGGAATTTGGGTGAAGG 59.382 52.381 0.00 0.00 0.00 3.46
3302 7866 2.597455 AGTGGTGGAATTTGGGTGAAG 58.403 47.619 0.00 0.00 0.00 3.02
3303 7867 2.765689 AGTGGTGGAATTTGGGTGAA 57.234 45.000 0.00 0.00 0.00 3.18
3304 7868 2.593026 GAAGTGGTGGAATTTGGGTGA 58.407 47.619 0.00 0.00 0.00 4.02
3305 7869 1.618343 GGAAGTGGTGGAATTTGGGTG 59.382 52.381 0.00 0.00 0.00 4.61
3306 7870 1.503347 AGGAAGTGGTGGAATTTGGGT 59.497 47.619 0.00 0.00 0.00 4.51
3307 7871 2.309136 AGGAAGTGGTGGAATTTGGG 57.691 50.000 0.00 0.00 0.00 4.12
3308 7872 3.500343 AGAAGGAAGTGGTGGAATTTGG 58.500 45.455 0.00 0.00 0.00 3.28
3309 7873 3.189287 CGAGAAGGAAGTGGTGGAATTTG 59.811 47.826 0.00 0.00 0.00 2.32
3310 7874 3.181443 ACGAGAAGGAAGTGGTGGAATTT 60.181 43.478 0.00 0.00 0.00 1.82
3311 7875 2.372172 ACGAGAAGGAAGTGGTGGAATT 59.628 45.455 0.00 0.00 0.00 2.17
3312 7876 1.978580 ACGAGAAGGAAGTGGTGGAAT 59.021 47.619 0.00 0.00 0.00 3.01
3313 7877 1.420430 ACGAGAAGGAAGTGGTGGAA 58.580 50.000 0.00 0.00 0.00 3.53
3314 7878 1.070134 CAACGAGAAGGAAGTGGTGGA 59.930 52.381 0.00 0.00 0.00 4.02
3315 7879 1.512926 CAACGAGAAGGAAGTGGTGG 58.487 55.000 0.00 0.00 0.00 4.61
3316 7880 1.512926 CCAACGAGAAGGAAGTGGTG 58.487 55.000 0.00 0.00 0.00 4.17
3317 7881 0.396811 CCCAACGAGAAGGAAGTGGT 59.603 55.000 0.00 0.00 0.00 4.16
3318 7882 0.955919 GCCCAACGAGAAGGAAGTGG 60.956 60.000 0.00 0.00 0.00 4.00
3319 7883 0.955919 GGCCCAACGAGAAGGAAGTG 60.956 60.000 0.00 0.00 0.00 3.16
3320 7884 1.375326 GGCCCAACGAGAAGGAAGT 59.625 57.895 0.00 0.00 0.00 3.01
3321 7885 1.741770 CGGCCCAACGAGAAGGAAG 60.742 63.158 0.00 0.00 35.47 3.46
3322 7886 2.345991 CGGCCCAACGAGAAGGAA 59.654 61.111 0.00 0.00 35.47 3.36
3323 7887 2.920912 ACGGCCCAACGAGAAGGA 60.921 61.111 0.00 0.00 37.61 3.36
3324 7888 2.162338 TACACGGCCCAACGAGAAGG 62.162 60.000 0.00 0.00 37.61 3.46
3325 7889 0.736325 CTACACGGCCCAACGAGAAG 60.736 60.000 0.00 0.00 37.61 2.85
3326 7890 1.290955 CTACACGGCCCAACGAGAA 59.709 57.895 0.00 0.00 37.61 2.87
3327 7891 0.608856 TACTACACGGCCCAACGAGA 60.609 55.000 0.00 0.00 37.61 4.04
3328 7892 0.244450 TTACTACACGGCCCAACGAG 59.756 55.000 0.00 0.00 37.61 4.18
3329 7893 0.896923 ATTACTACACGGCCCAACGA 59.103 50.000 0.00 0.00 37.61 3.85
3330 7894 1.662122 GAATTACTACACGGCCCAACG 59.338 52.381 0.00 0.00 40.31 4.10
3331 7895 2.676342 CTGAATTACTACACGGCCCAAC 59.324 50.000 0.00 0.00 0.00 3.77
3332 7896 2.303600 ACTGAATTACTACACGGCCCAA 59.696 45.455 0.00 0.00 0.00 4.12
3333 7897 1.903860 ACTGAATTACTACACGGCCCA 59.096 47.619 0.00 0.00 0.00 5.36
3334 7898 2.685850 ACTGAATTACTACACGGCCC 57.314 50.000 0.00 0.00 0.00 5.80
3335 7899 4.719040 CAAAACTGAATTACTACACGGCC 58.281 43.478 0.00 0.00 0.00 6.13
3336 7900 4.156182 GCAAAACTGAATTACTACACGGC 58.844 43.478 0.00 0.00 0.00 5.68
3337 7901 4.214545 TGGCAAAACTGAATTACTACACGG 59.785 41.667 0.00 0.00 0.00 4.94
3338 7902 5.144359 GTGGCAAAACTGAATTACTACACG 58.856 41.667 0.00 0.00 0.00 4.49
3339 7903 6.067263 TGTGGCAAAACTGAATTACTACAC 57.933 37.500 0.00 0.00 0.00 2.90
3340 7904 6.488344 TGATGTGGCAAAACTGAATTACTACA 59.512 34.615 0.00 0.00 0.00 2.74
3341 7905 6.908825 TGATGTGGCAAAACTGAATTACTAC 58.091 36.000 0.00 0.00 0.00 2.73
3342 7906 6.349280 GCTGATGTGGCAAAACTGAATTACTA 60.349 38.462 0.00 0.00 0.00 1.82
3343 7907 5.565439 GCTGATGTGGCAAAACTGAATTACT 60.565 40.000 0.00 0.00 0.00 2.24
3344 7908 4.622740 GCTGATGTGGCAAAACTGAATTAC 59.377 41.667 0.00 0.00 0.00 1.89
3345 7909 4.615682 CGCTGATGTGGCAAAACTGAATTA 60.616 41.667 0.00 0.00 0.00 1.40
3346 7910 3.656559 GCTGATGTGGCAAAACTGAATT 58.343 40.909 0.00 0.00 0.00 2.17
3347 7911 2.352030 CGCTGATGTGGCAAAACTGAAT 60.352 45.455 0.00 0.00 0.00 2.57
3348 7912 1.001487 CGCTGATGTGGCAAAACTGAA 60.001 47.619 0.00 0.00 0.00 3.02
3349 7913 0.592637 CGCTGATGTGGCAAAACTGA 59.407 50.000 0.00 0.00 0.00 3.41
3350 7914 0.592637 TCGCTGATGTGGCAAAACTG 59.407 50.000 0.00 0.00 0.00 3.16
3351 7915 0.593128 GTCGCTGATGTGGCAAAACT 59.407 50.000 0.00 0.00 0.00 2.66
3352 7916 0.387239 GGTCGCTGATGTGGCAAAAC 60.387 55.000 0.00 0.00 0.00 2.43
3353 7917 0.821301 TGGTCGCTGATGTGGCAAAA 60.821 50.000 0.00 0.00 0.00 2.44
3354 7918 1.228094 TGGTCGCTGATGTGGCAAA 60.228 52.632 0.00 0.00 0.00 3.68
3355 7919 1.965930 GTGGTCGCTGATGTGGCAA 60.966 57.895 0.00 0.00 0.00 4.52
3356 7920 2.358615 GTGGTCGCTGATGTGGCA 60.359 61.111 0.00 0.00 0.00 4.92
3357 7921 3.127533 GGTGGTCGCTGATGTGGC 61.128 66.667 0.00 0.00 0.00 5.01
3358 7922 2.815211 CGGTGGTCGCTGATGTGG 60.815 66.667 0.00 0.00 0.00 4.17
3359 7923 1.807165 CTCGGTGGTCGCTGATGTG 60.807 63.158 0.00 0.00 39.05 3.21
3360 7924 1.977009 TCTCGGTGGTCGCTGATGT 60.977 57.895 0.00 0.00 39.05 3.06
3361 7925 1.517257 GTCTCGGTGGTCGCTGATG 60.517 63.158 0.00 0.00 39.05 3.07
3362 7926 1.977009 TGTCTCGGTGGTCGCTGAT 60.977 57.895 0.00 0.00 39.05 2.90
3363 7927 2.596338 TGTCTCGGTGGTCGCTGA 60.596 61.111 0.00 0.00 39.05 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.