Multiple sequence alignment - TraesCS5B01G370800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G370800 chr5B 100.000 2917 0 0 1 2917 549710201 549713117 0.000000e+00 5387.0
1 TraesCS5B01G370800 chr5B 93.613 1049 56 6 902 1949 549954218 549953180 0.000000e+00 1555.0
2 TraesCS5B01G370800 chr5B 83.252 818 82 25 2103 2895 549947867 549947080 0.000000e+00 701.0
3 TraesCS5B01G370800 chr5B 88.147 464 31 6 1998 2437 549952846 549952383 5.530000e-147 531.0
4 TraesCS5B01G370800 chr5B 88.787 437 37 7 2491 2916 549952363 549951928 2.580000e-145 525.0
5 TraesCS5B01G370800 chr5B 85.882 85 12 0 714 798 549954301 549954217 1.110000e-14 91.6
6 TraesCS5B01G370800 chr5A 90.077 1300 89 25 714 2004 569151428 569152696 0.000000e+00 1650.0
7 TraesCS5B01G370800 chr5A 93.654 1103 52 14 902 2003 569224767 569223682 0.000000e+00 1633.0
8 TraesCS5B01G370800 chr5A 89.845 1034 70 13 973 2003 569183921 569182920 0.000000e+00 1295.0
9 TraesCS5B01G370800 chr5A 90.995 955 37 12 1995 2917 569152860 569153797 0.000000e+00 1242.0
10 TraesCS5B01G370800 chr5A 82.939 973 78 45 1998 2916 569223513 569222575 0.000000e+00 797.0
11 TraesCS5B01G370800 chr5A 84.671 835 74 28 2103 2916 569182621 569181820 0.000000e+00 784.0
12 TraesCS5B01G370800 chr5A 81.439 959 85 38 1998 2895 569218616 569217690 0.000000e+00 699.0
13 TraesCS5B01G370800 chr5A 86.912 489 42 9 226 710 569150906 569151376 1.990000e-146 529.0
14 TraesCS5B01G370800 chr5A 81.882 287 32 12 233 515 569225369 569225099 1.050000e-54 224.0
15 TraesCS5B01G370800 chr5D 92.670 1105 63 10 902 2003 449983302 449982213 0.000000e+00 1576.0
16 TraesCS5B01G370800 chr5D 92.586 1106 61 12 902 2003 449940999 449939911 0.000000e+00 1568.0
17 TraesCS5B01G370800 chr5D 93.574 1027 47 6 902 1928 449883690 449884697 0.000000e+00 1513.0
18 TraesCS5B01G370800 chr5D 92.153 943 40 13 1995 2917 449886654 449887582 0.000000e+00 1301.0
19 TraesCS5B01G370800 chr5D 86.157 968 70 25 1998 2916 449939745 449938793 0.000000e+00 987.0
20 TraesCS5B01G370800 chr5D 85.343 962 80 22 1998 2916 449982045 449981102 0.000000e+00 939.0
21 TraesCS5B01G370800 chr5D 83.544 474 41 15 1998 2434 449934975 449934502 2.710000e-110 409.0
22 TraesCS5B01G370800 chr5D 80.478 502 53 27 233 710 449941614 449941134 2.780000e-90 342.0
23 TraesCS5B01G370800 chr5D 83.641 379 39 10 2537 2895 449934438 449934063 4.660000e-88 335.0
24 TraesCS5B01G370800 chr5D 85.154 357 18 8 226 582 449883103 449883424 1.680000e-87 333.0
25 TraesCS5B01G370800 chr5D 90.830 229 17 3 573 798 449883464 449883691 1.310000e-78 303.0
26 TraesCS5B01G370800 chr5D 88.235 85 10 0 714 798 449941082 449940998 5.140000e-18 102.0
27 TraesCS5B01G370800 chr2D 88.104 1118 100 21 904 2003 347807276 347808378 0.000000e+00 1297.0
28 TraesCS5B01G370800 chr2D 81.184 473 53 15 1998 2434 347808548 347809020 5.980000e-92 348.0
29 TraesCS5B01G370800 chr2B 86.182 1129 98 30 902 2003 413062264 413063361 0.000000e+00 1168.0
30 TraesCS5B01G370800 chr2B 81.490 443 60 11 1998 2419 413063531 413063972 7.740000e-91 344.0
31 TraesCS5B01G370800 chr2B 96.429 112 3 1 794 904 550191557 550191668 1.790000e-42 183.0
32 TraesCS5B01G370800 chr2B 97.196 107 3 0 797 903 67548689 67548583 6.420000e-42 182.0
33 TraesCS5B01G370800 chr2B 91.489 47 3 1 190 235 541163891 541163845 2.430000e-06 63.9
34 TraesCS5B01G370800 chr1B 97.436 234 5 1 1 234 171407224 171407456 5.860000e-107 398.0
35 TraesCS5B01G370800 chr1B 87.225 227 25 4 1 225 541514509 541514733 3.730000e-64 255.0
36 TraesCS5B01G370800 chr4B 97.333 225 6 0 1 225 449010372 449010148 1.640000e-102 383.0
37 TraesCS5B01G370800 chr3B 99.107 112 1 0 797 908 702843488 702843599 4.930000e-48 202.0
38 TraesCS5B01G370800 chr3B 99.099 111 1 0 793 903 785320843 785320733 1.770000e-47 200.0
39 TraesCS5B01G370800 chr3B 89.286 56 1 4 174 227 666303853 666303801 6.750000e-07 65.8
40 TraesCS5B01G370800 chr1A 98.261 115 1 1 796 909 548413986 548414100 1.770000e-47 200.0
41 TraesCS5B01G370800 chr1A 96.364 110 4 0 794 903 577474628 577474737 6.420000e-42 182.0
42 TraesCS5B01G370800 chr1A 95.536 112 4 1 793 903 53034582 53034693 8.310000e-41 178.0
43 TraesCS5B01G370800 chr6A 97.297 111 3 0 794 904 559431626 559431736 3.840000e-44 189.0
44 TraesCS5B01G370800 chr6A 81.579 76 10 4 156 227 18854679 18854604 3.140000e-05 60.2
45 TraesCS5B01G370800 chr4A 97.196 107 3 0 797 903 563676984 563677090 6.420000e-42 182.0
46 TraesCS5B01G370800 chr2A 80.952 147 22 3 533 674 461414492 461414637 8.550000e-21 111.0
47 TraesCS5B01G370800 chr3A 93.182 44 3 0 180 223 491537681 491537724 6.750000e-07 65.8
48 TraesCS5B01G370800 chr6B 91.304 46 4 0 180 225 633366605 633366560 2.430000e-06 63.9
49 TraesCS5B01G370800 chrUn 100.000 32 0 0 195 226 301083543 301083512 3.140000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G370800 chr5B 549710201 549713117 2916 False 5387.000000 5387 100.00000 1 2917 1 chr5B.!!$F1 2916
1 TraesCS5B01G370800 chr5B 549947080 549947867 787 True 701.000000 701 83.25200 2103 2895 1 chr5B.!!$R1 792
2 TraesCS5B01G370800 chr5B 549951928 549954301 2373 True 675.650000 1555 89.10725 714 2916 4 chr5B.!!$R2 2202
3 TraesCS5B01G370800 chr5A 569150906 569153797 2891 False 1140.333333 1650 89.32800 226 2917 3 chr5A.!!$F1 2691
4 TraesCS5B01G370800 chr5A 569181820 569183921 2101 True 1039.500000 1295 87.25800 973 2916 2 chr5A.!!$R1 1943
5 TraesCS5B01G370800 chr5A 569217690 569225369 7679 True 838.250000 1633 84.97850 233 2916 4 chr5A.!!$R2 2683
6 TraesCS5B01G370800 chr5D 449981102 449983302 2200 True 1257.500000 1576 89.00650 902 2916 2 chr5D.!!$R2 2014
7 TraesCS5B01G370800 chr5D 449883103 449887582 4479 False 862.500000 1513 90.42775 226 2917 4 chr5D.!!$F1 2691
8 TraesCS5B01G370800 chr5D 449934063 449941614 7551 True 623.833333 1568 85.77350 233 2916 6 chr5D.!!$R1 2683
9 TraesCS5B01G370800 chr2D 347807276 347809020 1744 False 822.500000 1297 84.64400 904 2434 2 chr2D.!!$F1 1530
10 TraesCS5B01G370800 chr2B 413062264 413063972 1708 False 756.000000 1168 83.83600 902 2419 2 chr2B.!!$F2 1517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
863 1014 0.164647 GCTACTTTGCACGCTGTCTG 59.835 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2245 4511 0.107831 GCGTACCCCCATAGATTGCA 59.892 55.0 0.0 0.0 0.0 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.674281 GCTACCAGAGCCAAAGTATACT 57.326 45.455 0.00 0.00 46.41 2.12
30 31 5.024785 GCTACCAGAGCCAAAGTATACTT 57.975 43.478 12.50 12.50 46.41 2.24
31 32 6.158023 GCTACCAGAGCCAAAGTATACTTA 57.842 41.667 18.31 0.00 46.41 2.24
32 33 6.760291 GCTACCAGAGCCAAAGTATACTTAT 58.240 40.000 18.31 6.53 46.41 1.73
33 34 6.869388 GCTACCAGAGCCAAAGTATACTTATC 59.131 42.308 18.31 13.34 46.41 1.75
34 35 6.808321 ACCAGAGCCAAAGTATACTTATCA 57.192 37.500 18.31 0.00 34.61 2.15
35 36 7.195374 ACCAGAGCCAAAGTATACTTATCAA 57.805 36.000 18.31 0.00 34.61 2.57
36 37 7.048512 ACCAGAGCCAAAGTATACTTATCAAC 58.951 38.462 18.31 10.29 34.61 3.18
37 38 7.047891 CCAGAGCCAAAGTATACTTATCAACA 58.952 38.462 18.31 0.00 34.61 3.33
38 39 7.225538 CCAGAGCCAAAGTATACTTATCAACAG 59.774 40.741 18.31 7.35 34.61 3.16
39 40 7.981789 CAGAGCCAAAGTATACTTATCAACAGA 59.018 37.037 18.31 0.00 34.61 3.41
40 41 8.709308 AGAGCCAAAGTATACTTATCAACAGAT 58.291 33.333 18.31 1.96 34.61 2.90
41 42 8.894768 AGCCAAAGTATACTTATCAACAGATC 57.105 34.615 18.31 0.00 34.61 2.75
42 43 8.486210 AGCCAAAGTATACTTATCAACAGATCA 58.514 33.333 18.31 0.00 34.61 2.92
43 44 8.768955 GCCAAAGTATACTTATCAACAGATCAG 58.231 37.037 18.31 0.00 34.61 2.90
44 45 8.768955 CCAAAGTATACTTATCAACAGATCAGC 58.231 37.037 18.31 0.00 34.61 4.26
45 46 9.539825 CAAAGTATACTTATCAACAGATCAGCT 57.460 33.333 18.31 0.00 34.61 4.24
47 48 9.757227 AAGTATACTTATCAACAGATCAGCTTC 57.243 33.333 16.60 0.00 33.79 3.86
48 49 9.142014 AGTATACTTATCAACAGATCAGCTTCT 57.858 33.333 0.00 0.00 0.00 2.85
53 54 9.323985 ACTTATCAACAGATCAGCTTCTAAATC 57.676 33.333 0.00 0.00 0.00 2.17
54 55 9.322773 CTTATCAACAGATCAGCTTCTAAATCA 57.677 33.333 0.00 0.00 0.00 2.57
55 56 9.842775 TTATCAACAGATCAGCTTCTAAATCAT 57.157 29.630 0.00 0.00 0.00 2.45
56 57 8.749026 ATCAACAGATCAGCTTCTAAATCATT 57.251 30.769 0.00 0.00 0.00 2.57
57 58 8.571461 TCAACAGATCAGCTTCTAAATCATTT 57.429 30.769 0.00 0.00 0.00 2.32
58 59 8.456471 TCAACAGATCAGCTTCTAAATCATTTG 58.544 33.333 0.00 0.00 0.00 2.32
59 60 8.456471 CAACAGATCAGCTTCTAAATCATTTGA 58.544 33.333 0.00 0.00 0.00 2.69
60 61 7.983307 ACAGATCAGCTTCTAAATCATTTGAC 58.017 34.615 0.00 0.00 0.00 3.18
61 62 7.066766 ACAGATCAGCTTCTAAATCATTTGACC 59.933 37.037 0.00 0.00 0.00 4.02
62 63 7.066645 CAGATCAGCTTCTAAATCATTTGACCA 59.933 37.037 0.00 0.00 0.00 4.02
63 64 7.778853 AGATCAGCTTCTAAATCATTTGACCAT 59.221 33.333 0.00 0.00 0.00 3.55
64 65 7.707624 TCAGCTTCTAAATCATTTGACCATT 57.292 32.000 0.00 0.00 0.00 3.16
65 66 8.125978 TCAGCTTCTAAATCATTTGACCATTT 57.874 30.769 0.00 0.00 0.00 2.32
66 67 8.587608 TCAGCTTCTAAATCATTTGACCATTTT 58.412 29.630 0.00 0.00 0.00 1.82
67 68 8.866956 CAGCTTCTAAATCATTTGACCATTTTC 58.133 33.333 0.00 0.00 0.00 2.29
68 69 8.587608 AGCTTCTAAATCATTTGACCATTTTCA 58.412 29.630 0.00 0.00 0.00 2.69
69 70 9.206870 GCTTCTAAATCATTTGACCATTTTCAA 57.793 29.630 0.00 0.00 33.55 2.69
72 73 9.153721 TCTAAATCATTTGACCATTTTCAATGC 57.846 29.630 0.00 0.00 35.42 3.56
73 74 7.989416 AAATCATTTGACCATTTTCAATGCT 57.011 28.000 0.00 0.00 35.42 3.79
74 75 7.989416 AATCATTTGACCATTTTCAATGCTT 57.011 28.000 0.00 0.00 35.42 3.91
75 76 7.989416 ATCATTTGACCATTTTCAATGCTTT 57.011 28.000 0.00 0.00 35.42 3.51
76 77 7.192148 TCATTTGACCATTTTCAATGCTTTG 57.808 32.000 5.99 5.99 35.42 2.77
77 78 6.766944 TCATTTGACCATTTTCAATGCTTTGT 59.233 30.769 11.67 0.00 35.42 2.83
78 79 7.930325 TCATTTGACCATTTTCAATGCTTTGTA 59.070 29.630 11.67 0.04 35.42 2.41
79 80 8.723311 CATTTGACCATTTTCAATGCTTTGTAT 58.277 29.630 11.67 2.84 35.42 2.29
80 81 7.655236 TTGACCATTTTCAATGCTTTGTATG 57.345 32.000 11.67 12.48 34.32 2.39
81 82 6.990798 TGACCATTTTCAATGCTTTGTATGA 58.009 32.000 11.67 0.00 34.32 2.15
82 83 6.867816 TGACCATTTTCAATGCTTTGTATGAC 59.132 34.615 11.67 10.88 34.32 3.06
83 84 5.863397 ACCATTTTCAATGCTTTGTATGACG 59.137 36.000 11.67 6.13 34.32 4.35
84 85 5.289193 CCATTTTCAATGCTTTGTATGACGG 59.711 40.000 11.67 4.30 34.32 4.79
85 86 5.446143 TTTTCAATGCTTTGTATGACGGT 57.554 34.783 11.67 0.00 34.32 4.83
86 87 5.446143 TTTCAATGCTTTGTATGACGGTT 57.554 34.783 11.67 0.00 34.32 4.44
87 88 4.678509 TCAATGCTTTGTATGACGGTTC 57.321 40.909 11.67 0.00 34.32 3.62
88 89 4.068599 TCAATGCTTTGTATGACGGTTCA 58.931 39.130 11.67 0.00 33.49 3.18
89 90 4.154015 TCAATGCTTTGTATGACGGTTCAG 59.846 41.667 11.67 0.00 32.91 3.02
90 91 3.394674 TGCTTTGTATGACGGTTCAGA 57.605 42.857 0.00 0.00 34.35 3.27
91 92 3.937814 TGCTTTGTATGACGGTTCAGAT 58.062 40.909 0.00 0.00 34.35 2.90
92 93 5.079689 TGCTTTGTATGACGGTTCAGATA 57.920 39.130 0.00 0.00 34.35 1.98
93 94 5.109210 TGCTTTGTATGACGGTTCAGATAG 58.891 41.667 0.00 0.00 34.35 2.08
94 95 5.105513 TGCTTTGTATGACGGTTCAGATAGA 60.106 40.000 0.00 0.00 34.35 1.98
95 96 5.986135 GCTTTGTATGACGGTTCAGATAGAT 59.014 40.000 0.00 0.00 34.35 1.98
96 97 6.074088 GCTTTGTATGACGGTTCAGATAGATG 60.074 42.308 0.00 0.00 34.35 2.90
97 98 6.709018 TTGTATGACGGTTCAGATAGATGA 57.291 37.500 0.00 0.00 34.35 2.92
98 99 6.901081 TGTATGACGGTTCAGATAGATGAT 57.099 37.500 0.00 0.00 34.35 2.45
99 100 6.681777 TGTATGACGGTTCAGATAGATGATG 58.318 40.000 0.00 0.00 34.35 3.07
100 101 6.490040 TGTATGACGGTTCAGATAGATGATGA 59.510 38.462 0.00 0.00 34.35 2.92
101 102 5.188327 TGACGGTTCAGATAGATGATGAC 57.812 43.478 0.00 0.00 0.00 3.06
102 103 4.644685 TGACGGTTCAGATAGATGATGACA 59.355 41.667 0.00 0.00 0.00 3.58
103 104 5.302823 TGACGGTTCAGATAGATGATGACAT 59.697 40.000 0.00 0.00 39.67 3.06
104 105 7.790415 ATGACGGTTCAGATAGATGATGACATC 60.790 40.741 8.59 8.59 42.88 3.06
130 131 9.793252 CTGATTAATATTTTGTTGTTCTGGAGG 57.207 33.333 0.00 0.00 0.00 4.30
131 132 9.308000 TGATTAATATTTTGTTGTTCTGGAGGT 57.692 29.630 0.00 0.00 0.00 3.85
135 136 8.661352 AATATTTTGTTGTTCTGGAGGTTTTG 57.339 30.769 0.00 0.00 0.00 2.44
136 137 5.476091 TTTTGTTGTTCTGGAGGTTTTGT 57.524 34.783 0.00 0.00 0.00 2.83
137 138 4.712122 TTGTTGTTCTGGAGGTTTTGTC 57.288 40.909 0.00 0.00 0.00 3.18
138 139 3.963129 TGTTGTTCTGGAGGTTTTGTCT 58.037 40.909 0.00 0.00 0.00 3.41
139 140 5.105567 TGTTGTTCTGGAGGTTTTGTCTA 57.894 39.130 0.00 0.00 0.00 2.59
140 141 5.690865 TGTTGTTCTGGAGGTTTTGTCTAT 58.309 37.500 0.00 0.00 0.00 1.98
141 142 6.833041 TGTTGTTCTGGAGGTTTTGTCTATA 58.167 36.000 0.00 0.00 0.00 1.31
142 143 7.458397 TGTTGTTCTGGAGGTTTTGTCTATAT 58.542 34.615 0.00 0.00 0.00 0.86
143 144 7.390440 TGTTGTTCTGGAGGTTTTGTCTATATG 59.610 37.037 0.00 0.00 0.00 1.78
144 145 7.252612 TGTTCTGGAGGTTTTGTCTATATGA 57.747 36.000 0.00 0.00 0.00 2.15
145 146 7.685481 TGTTCTGGAGGTTTTGTCTATATGAA 58.315 34.615 0.00 0.00 0.00 2.57
146 147 8.160765 TGTTCTGGAGGTTTTGTCTATATGAAA 58.839 33.333 0.00 0.00 0.00 2.69
147 148 9.010029 GTTCTGGAGGTTTTGTCTATATGAAAA 57.990 33.333 0.00 0.00 0.00 2.29
148 149 9.581289 TTCTGGAGGTTTTGTCTATATGAAAAA 57.419 29.630 0.00 0.00 30.50 1.94
149 150 9.753674 TCTGGAGGTTTTGTCTATATGAAAAAT 57.246 29.630 0.00 0.00 32.43 1.82
176 177 7.816945 TGCTTTCTTGCAAATAAAGATTAGC 57.183 32.000 26.47 18.58 41.06 3.09
177 178 7.377398 TGCTTTCTTGCAAATAAAGATTAGCA 58.623 30.769 26.47 20.23 41.06 3.49
178 179 7.329226 TGCTTTCTTGCAAATAAAGATTAGCAC 59.671 33.333 26.47 13.83 41.06 4.40
179 180 7.329226 GCTTTCTTGCAAATAAAGATTAGCACA 59.671 33.333 26.47 0.00 41.06 4.57
180 181 9.362539 CTTTCTTGCAAATAAAGATTAGCACAT 57.637 29.630 21.25 0.00 41.06 3.21
181 182 9.709495 TTTCTTGCAAATAAAGATTAGCACATT 57.291 25.926 0.00 0.00 33.79 2.71
182 183 9.709495 TTCTTGCAAATAAAGATTAGCACATTT 57.291 25.926 0.00 0.00 33.79 2.32
183 184 9.142515 TCTTGCAAATAAAGATTAGCACATTTG 57.857 29.630 0.00 0.00 36.77 2.32
184 185 9.142515 CTTGCAAATAAAGATTAGCACATTTGA 57.857 29.630 0.00 0.00 36.11 2.69
185 186 9.656040 TTGCAAATAAAGATTAGCACATTTGAT 57.344 25.926 0.00 0.00 36.11 2.57
186 187 9.089601 TGCAAATAAAGATTAGCACATTTGATG 57.910 29.630 8.58 0.00 36.11 3.07
187 188 8.545420 GCAAATAAAGATTAGCACATTTGATGG 58.455 33.333 8.58 0.00 36.11 3.51
188 189 9.590451 CAAATAAAGATTAGCACATTTGATGGT 57.410 29.630 0.00 0.00 36.11 3.55
192 193 7.944729 AAGATTAGCACATTTGATGGTAAGT 57.055 32.000 3.43 0.00 41.77 2.24
193 194 7.559590 AGATTAGCACATTTGATGGTAAGTC 57.440 36.000 3.43 2.35 41.77 3.01
194 195 7.112122 AGATTAGCACATTTGATGGTAAGTCA 58.888 34.615 3.43 0.00 41.77 3.41
195 196 6.741992 TTAGCACATTTGATGGTAAGTCAG 57.258 37.500 0.00 0.00 35.64 3.51
196 197 4.910195 AGCACATTTGATGGTAAGTCAGA 58.090 39.130 0.00 0.00 33.60 3.27
197 198 4.697352 AGCACATTTGATGGTAAGTCAGAC 59.303 41.667 0.00 0.00 33.60 3.51
198 199 4.436050 GCACATTTGATGGTAAGTCAGACG 60.436 45.833 0.00 0.00 33.60 4.18
199 200 4.690748 CACATTTGATGGTAAGTCAGACGT 59.309 41.667 0.00 0.00 33.60 4.34
200 201 4.690748 ACATTTGATGGTAAGTCAGACGTG 59.309 41.667 0.00 0.00 33.60 4.49
201 202 2.363788 TGATGGTAAGTCAGACGTGC 57.636 50.000 0.00 0.00 0.00 5.34
202 203 1.616374 TGATGGTAAGTCAGACGTGCA 59.384 47.619 6.89 0.00 0.00 4.57
203 204 2.233676 TGATGGTAAGTCAGACGTGCAT 59.766 45.455 6.89 0.00 0.00 3.96
204 205 2.831685 TGGTAAGTCAGACGTGCATT 57.168 45.000 6.89 0.00 0.00 3.56
205 206 2.412870 TGGTAAGTCAGACGTGCATTG 58.587 47.619 6.89 0.00 0.00 2.82
206 207 1.128692 GGTAAGTCAGACGTGCATTGC 59.871 52.381 0.46 0.46 0.00 3.56
207 208 1.798223 GTAAGTCAGACGTGCATTGCA 59.202 47.619 7.38 7.38 35.60 4.08
224 225 1.429463 GCACGTGCAAGCTTACTAGT 58.571 50.000 34.52 0.00 41.59 2.57
225 226 1.798813 GCACGTGCAAGCTTACTAGTT 59.201 47.619 34.52 0.00 41.59 2.24
226 227 2.223377 GCACGTGCAAGCTTACTAGTTT 59.777 45.455 34.52 0.00 41.59 2.66
227 228 3.664537 GCACGTGCAAGCTTACTAGTTTC 60.665 47.826 34.52 0.00 41.59 2.78
228 229 3.493129 CACGTGCAAGCTTACTAGTTTCA 59.507 43.478 0.82 0.00 0.00 2.69
229 230 4.025229 CACGTGCAAGCTTACTAGTTTCAA 60.025 41.667 0.82 0.00 0.00 2.69
230 231 4.755123 ACGTGCAAGCTTACTAGTTTCAAT 59.245 37.500 0.00 0.00 0.00 2.57
231 232 5.929992 ACGTGCAAGCTTACTAGTTTCAATA 59.070 36.000 0.00 0.00 0.00 1.90
436 438 6.578944 AGGAAATTCCCTTTTGTTTGTGTAC 58.421 36.000 8.66 0.00 37.19 2.90
447 454 2.608090 TGTTTGTGTACGCGTCATGAAA 59.392 40.909 18.63 13.37 0.00 2.69
454 461 1.556564 ACGCGTCATGAAATAGGTCG 58.443 50.000 5.58 0.00 0.00 4.79
455 462 1.135199 ACGCGTCATGAAATAGGTCGT 60.135 47.619 5.58 0.00 0.00 4.34
477 484 1.961277 GCACGTCAGGGGTTCACAG 60.961 63.158 0.00 0.00 0.00 3.66
479 486 0.600255 CACGTCAGGGGTTCACAGAC 60.600 60.000 0.00 0.00 0.00 3.51
499 506 1.128724 GACACATGACGACGAGAGCG 61.129 60.000 0.00 0.00 44.79 5.03
500 507 1.869574 CACATGACGACGAGAGCGG 60.870 63.158 0.00 0.00 43.17 5.52
501 508 2.951745 CATGACGACGAGAGCGGC 60.952 66.667 0.00 0.00 43.80 6.53
502 509 3.134792 ATGACGACGAGAGCGGCT 61.135 61.111 0.00 0.00 45.51 5.52
503 510 3.114647 ATGACGACGAGAGCGGCTC 62.115 63.158 22.13 22.13 45.51 4.70
504 511 4.539881 GACGACGAGAGCGGCTCC 62.540 72.222 25.49 15.86 45.51 4.70
545 583 4.144027 CGTCGTGAAATTTCGAGCTTTTTG 60.144 41.667 13.34 0.00 36.76 2.44
551 589 6.359883 GTGAAATTTCGAGCTTTTTGGACTAC 59.640 38.462 13.34 0.00 0.00 2.73
590 678 4.502962 TGATCGAGCATGTGATGTTAACA 58.497 39.130 11.41 11.41 0.00 2.41
602 690 6.923012 TGTGATGTTAACAATTCCATCCAAG 58.077 36.000 13.23 0.00 34.22 3.61
646 734 5.022282 TGTGTCAGATGTCTTGAACTTGA 57.978 39.130 0.00 0.00 0.00 3.02
703 851 7.244886 TGATGAGATTCTTTAGTCCACTTGA 57.755 36.000 0.00 0.00 0.00 3.02
705 853 5.794894 TGAGATTCTTTAGTCCACTTGACC 58.205 41.667 0.00 0.00 45.68 4.02
706 854 5.167303 AGATTCTTTAGTCCACTTGACCC 57.833 43.478 0.00 0.00 45.68 4.46
707 855 4.597507 AGATTCTTTAGTCCACTTGACCCA 59.402 41.667 0.00 0.00 45.68 4.51
708 856 4.351874 TTCTTTAGTCCACTTGACCCAG 57.648 45.455 0.00 0.00 45.68 4.45
709 857 2.637872 TCTTTAGTCCACTTGACCCAGG 59.362 50.000 0.00 0.00 45.68 4.45
710 858 2.112279 TTAGTCCACTTGACCCAGGT 57.888 50.000 0.00 0.00 45.68 4.00
711 859 2.112279 TAGTCCACTTGACCCAGGTT 57.888 50.000 0.00 0.00 45.68 3.50
712 860 1.222567 AGTCCACTTGACCCAGGTTT 58.777 50.000 0.00 0.00 45.68 3.27
747 898 6.945636 TCCTCTTGGTTTCCTTACTGAATA 57.054 37.500 0.00 0.00 34.23 1.75
792 943 3.242543 GCAGCATTGACGAGGTTGATTAG 60.243 47.826 0.00 0.00 0.00 1.73
795 946 5.755375 CAGCATTGACGAGGTTGATTAGTAT 59.245 40.000 0.00 0.00 0.00 2.12
797 948 7.438160 CAGCATTGACGAGGTTGATTAGTATTA 59.562 37.037 0.00 0.00 0.00 0.98
799 950 7.438459 GCATTGACGAGGTTGATTAGTATTACT 59.562 37.037 1.30 1.30 0.00 2.24
800 951 8.969267 CATTGACGAGGTTGATTAGTATTACTC 58.031 37.037 0.00 0.00 0.00 2.59
801 952 7.035840 TGACGAGGTTGATTAGTATTACTCC 57.964 40.000 0.00 0.00 0.00 3.85
802 953 6.040166 TGACGAGGTTGATTAGTATTACTCCC 59.960 42.308 0.00 0.00 0.00 4.30
803 954 6.134754 ACGAGGTTGATTAGTATTACTCCCT 58.865 40.000 0.00 0.00 0.00 4.20
804 955 6.264970 ACGAGGTTGATTAGTATTACTCCCTC 59.735 42.308 0.00 6.19 33.14 4.30
805 956 6.294620 CGAGGTTGATTAGTATTACTCCCTCC 60.295 46.154 0.00 0.00 32.92 4.30
806 957 5.539193 AGGTTGATTAGTATTACTCCCTCCG 59.461 44.000 0.00 0.00 0.00 4.63
807 958 5.303845 GGTTGATTAGTATTACTCCCTCCGT 59.696 44.000 0.00 0.00 0.00 4.69
808 959 6.183360 GGTTGATTAGTATTACTCCCTCCGTT 60.183 42.308 0.00 0.00 0.00 4.44
809 960 6.645790 TGATTAGTATTACTCCCTCCGTTC 57.354 41.667 0.00 0.00 0.00 3.95
811 962 5.841957 TTAGTATTACTCCCTCCGTTCAC 57.158 43.478 0.00 0.00 0.00 3.18
813 964 4.351127 AGTATTACTCCCTCCGTTCACTT 58.649 43.478 0.00 0.00 0.00 3.16
814 965 4.776308 AGTATTACTCCCTCCGTTCACTTT 59.224 41.667 0.00 0.00 0.00 2.66
816 967 2.256117 ACTCCCTCCGTTCACTTTTG 57.744 50.000 0.00 0.00 0.00 2.44
821 972 3.135167 TCCCTCCGTTCACTTTTGTAAGT 59.865 43.478 0.00 0.00 45.40 2.24
822 973 3.497262 CCCTCCGTTCACTTTTGTAAGTC 59.503 47.826 0.00 0.00 42.67 3.01
823 974 4.124238 CCTCCGTTCACTTTTGTAAGTCA 58.876 43.478 0.00 0.00 42.67 3.41
824 975 4.755123 CCTCCGTTCACTTTTGTAAGTCAT 59.245 41.667 0.00 0.00 42.67 3.06
827 978 6.721321 TCCGTTCACTTTTGTAAGTCATTTC 58.279 36.000 0.00 0.00 42.67 2.17
830 981 7.406553 CGTTCACTTTTGTAAGTCATTTCAGA 58.593 34.615 0.00 0.00 42.67 3.27
831 982 7.373441 CGTTCACTTTTGTAAGTCATTTCAGAC 59.627 37.037 0.00 0.00 42.67 3.51
832 983 7.857734 TCACTTTTGTAAGTCATTTCAGACA 57.142 32.000 0.00 0.00 42.67 3.41
833 984 8.275015 TCACTTTTGTAAGTCATTTCAGACAA 57.725 30.769 0.00 0.00 42.67 3.18
834 985 8.181573 TCACTTTTGTAAGTCATTTCAGACAAC 58.818 33.333 0.00 0.00 42.67 3.32
835 986 8.184192 CACTTTTGTAAGTCATTTCAGACAACT 58.816 33.333 0.00 0.00 42.67 3.16
836 987 8.184192 ACTTTTGTAAGTCATTTCAGACAACTG 58.816 33.333 0.00 0.00 40.60 3.16
851 1002 7.440523 CAGACAACTGAAAATAGGCTACTTT 57.559 36.000 0.00 0.00 46.03 2.66
852 1003 7.301054 CAGACAACTGAAAATAGGCTACTTTG 58.699 38.462 5.59 0.00 46.03 2.77
853 1004 6.013842 ACAACTGAAAATAGGCTACTTTGC 57.986 37.500 5.59 3.58 0.00 3.68
854 1005 5.534654 ACAACTGAAAATAGGCTACTTTGCA 59.465 36.000 5.59 7.59 34.04 4.08
855 1006 5.629079 ACTGAAAATAGGCTACTTTGCAC 57.371 39.130 5.59 0.00 34.04 4.57
857 1008 3.119990 TGAAAATAGGCTACTTTGCACGC 60.120 43.478 5.59 0.00 34.04 5.34
858 1009 2.403252 AATAGGCTACTTTGCACGCT 57.597 45.000 0.00 0.00 34.04 5.07
859 1010 1.656652 ATAGGCTACTTTGCACGCTG 58.343 50.000 0.00 0.00 34.04 5.18
862 1013 0.951040 GGCTACTTTGCACGCTGTCT 60.951 55.000 0.00 0.00 34.04 3.41
863 1014 0.164647 GCTACTTTGCACGCTGTCTG 59.835 55.000 0.00 0.00 0.00 3.51
866 1017 1.378531 ACTTTGCACGCTGTCTGAAA 58.621 45.000 0.00 0.00 0.00 2.69
867 1018 1.949525 ACTTTGCACGCTGTCTGAAAT 59.050 42.857 0.00 0.00 0.00 2.17
868 1019 2.358898 ACTTTGCACGCTGTCTGAAATT 59.641 40.909 0.00 0.00 0.00 1.82
869 1020 2.686558 TTGCACGCTGTCTGAAATTC 57.313 45.000 0.00 0.00 0.00 2.17
872 1023 2.224079 TGCACGCTGTCTGAAATTCTTC 59.776 45.455 0.00 0.00 0.00 2.87
885 1036 6.751514 TGAAATTCTTCAGCGCCTTATAAA 57.248 33.333 2.29 0.00 36.62 1.40
886 1037 7.151999 TGAAATTCTTCAGCGCCTTATAAAA 57.848 32.000 2.29 0.00 36.62 1.52
887 1038 7.250569 TGAAATTCTTCAGCGCCTTATAAAAG 58.749 34.615 2.29 0.00 36.62 2.27
888 1039 6.759497 AATTCTTCAGCGCCTTATAAAAGT 57.241 33.333 2.29 0.00 0.00 2.66
893 1044 4.320023 TCAGCGCCTTATAAAAGTGAACA 58.680 39.130 2.29 0.00 0.00 3.18
894 1045 4.391830 TCAGCGCCTTATAAAAGTGAACAG 59.608 41.667 2.29 0.00 0.00 3.16
895 1046 4.391830 CAGCGCCTTATAAAAGTGAACAGA 59.608 41.667 2.29 0.00 0.00 3.41
896 1047 4.631813 AGCGCCTTATAAAAGTGAACAGAG 59.368 41.667 2.29 0.00 0.00 3.35
897 1048 4.201822 GCGCCTTATAAAAGTGAACAGAGG 60.202 45.833 0.00 0.00 0.00 3.69
898 1049 4.332819 CGCCTTATAAAAGTGAACAGAGGG 59.667 45.833 0.00 0.00 0.00 4.30
899 1050 5.497474 GCCTTATAAAAGTGAACAGAGGGA 58.503 41.667 0.00 0.00 0.00 4.20
900 1051 5.586643 GCCTTATAAAAGTGAACAGAGGGAG 59.413 44.000 0.00 0.00 0.00 4.30
912 1063 7.940137 AGTGAACAGAGGGAGTAGTATATACTG 59.060 40.741 23.09 8.23 37.10 2.74
943 1096 9.707957 AAACATGATAAATATACCCCACTTCAA 57.292 29.630 0.00 0.00 0.00 2.69
1302 1466 6.846505 ACCTCTCCTACATATTTTGATCCTCA 59.153 38.462 0.00 0.00 0.00 3.86
1303 1467 7.515514 ACCTCTCCTACATATTTTGATCCTCAT 59.484 37.037 0.00 0.00 0.00 2.90
1304 1468 7.823310 CCTCTCCTACATATTTTGATCCTCATG 59.177 40.741 0.00 0.00 0.00 3.07
1305 1469 8.496534 TCTCCTACATATTTTGATCCTCATGA 57.503 34.615 0.00 0.00 0.00 3.07
1395 1570 2.037136 GCGAGCAGCTTGGACACAT 61.037 57.895 11.92 0.00 44.04 3.21
1511 1686 2.809601 GTGCTCTGGGCGTACACG 60.810 66.667 0.00 0.00 45.43 4.49
1514 1689 3.066190 CTCTGGGCGTACACGGGA 61.066 66.667 3.67 0.00 40.23 5.14
1608 1783 3.572682 TCCATCACTATTCGCTTACGGAT 59.427 43.478 0.00 0.00 41.54 4.18
1620 1795 0.321564 TTACGGATTGCTGCAGTGCT 60.322 50.000 17.60 0.00 0.00 4.40
1666 1841 2.873557 ATCGTCCTCCCGGTGATGGT 62.874 60.000 0.00 0.00 0.00 3.55
1799 1974 5.179045 CCAATGTGTCAATCTTGGCTATC 57.821 43.478 0.00 0.00 32.44 2.08
1800 1975 4.885907 CCAATGTGTCAATCTTGGCTATCT 59.114 41.667 0.00 0.00 32.44 1.98
1801 1976 6.057533 CCAATGTGTCAATCTTGGCTATCTA 58.942 40.000 0.00 0.00 32.44 1.98
1802 1977 6.017605 CCAATGTGTCAATCTTGGCTATCTAC 60.018 42.308 0.00 0.00 32.44 2.59
1803 1978 5.675684 TGTGTCAATCTTGGCTATCTACA 57.324 39.130 0.00 0.00 33.01 2.74
1804 1979 6.239217 TGTGTCAATCTTGGCTATCTACAT 57.761 37.500 0.00 0.00 33.01 2.29
1805 1980 6.283694 TGTGTCAATCTTGGCTATCTACATC 58.716 40.000 0.00 0.00 33.01 3.06
1806 1981 6.127083 TGTGTCAATCTTGGCTATCTACATCA 60.127 38.462 0.00 0.00 33.01 3.07
1807 1982 6.423302 GTGTCAATCTTGGCTATCTACATCAG 59.577 42.308 0.00 0.00 33.01 2.90
1808 1983 5.931146 GTCAATCTTGGCTATCTACATCAGG 59.069 44.000 0.00 0.00 0.00 3.86
1809 1984 5.012458 TCAATCTTGGCTATCTACATCAGGG 59.988 44.000 0.00 0.00 0.00 4.45
1815 1990 3.761752 GGCTATCTACATCAGGGTCTCTC 59.238 52.174 0.00 0.00 0.00 3.20
1878 2067 0.179111 TCACGGCATCCTTAGCTTCG 60.179 55.000 0.00 0.00 0.00 3.79
1908 2097 0.677414 TTTGCCATCTGCGCTGATGA 60.677 50.000 41.64 28.03 44.71 2.92
1935 3845 3.383505 GTGAGTTTTAGTTTGTGCCCCTT 59.616 43.478 0.00 0.00 0.00 3.95
1943 3866 3.844640 AGTTTGTGCCCCTTAGATTTGT 58.155 40.909 0.00 0.00 0.00 2.83
1951 3989 5.071923 GTGCCCCTTAGATTTGTAGGTAGAT 59.928 44.000 0.00 0.00 0.00 1.98
1952 3990 6.269307 GTGCCCCTTAGATTTGTAGGTAGATA 59.731 42.308 0.00 0.00 0.00 1.98
1953 3991 7.023120 TGCCCCTTAGATTTGTAGGTAGATAT 58.977 38.462 0.00 0.00 0.00 1.63
2012 4227 7.903145 TCCTACATGTACACAGTTTCATTAGT 58.097 34.615 0.08 0.00 0.00 2.24
2027 4242 8.160106 AGTTTCATTAGTATTCATGATCCCCTC 58.840 37.037 0.00 0.00 29.45 4.30
2200 4466 2.562738 ACTCGTGTGATCATGGTTCTGA 59.437 45.455 0.00 0.00 0.00 3.27
2245 4511 3.584848 AGGACTTCTTATGCTCTTGGTGT 59.415 43.478 0.00 0.00 0.00 4.16
2312 4578 4.214971 GGAATACATTGCGAGAATGATGCT 59.785 41.667 12.94 0.00 0.00 3.79
2388 4663 7.544217 GGTAAATGCACCAAATAACTCGAATTT 59.456 33.333 0.00 0.00 38.55 1.82
2478 4768 4.323569 TGGACTCCAGTCTATCTTGTCT 57.676 45.455 6.68 0.00 44.20 3.41
2480 4770 3.314080 GGACTCCAGTCTATCTTGTCTCG 59.686 52.174 6.68 0.00 44.20 4.04
2482 4772 5.100344 ACTCCAGTCTATCTTGTCTCGTA 57.900 43.478 0.00 0.00 0.00 3.43
2483 4773 4.877251 ACTCCAGTCTATCTTGTCTCGTAC 59.123 45.833 0.00 0.00 0.00 3.67
2484 4774 5.100344 TCCAGTCTATCTTGTCTCGTACT 57.900 43.478 0.00 0.00 0.00 2.73
2704 5010 1.611977 CTCGGCGGAATGGTACTGATA 59.388 52.381 7.21 0.00 0.00 2.15
2705 5011 2.033372 TCGGCGGAATGGTACTGATAA 58.967 47.619 7.21 0.00 0.00 1.75
2706 5012 2.631062 TCGGCGGAATGGTACTGATAAT 59.369 45.455 7.21 0.00 0.00 1.28
2707 5013 3.070446 TCGGCGGAATGGTACTGATAATT 59.930 43.478 7.21 0.00 0.00 1.40
2732 5065 3.057315 ACCATGCATACAGAAAGTTGCAC 60.057 43.478 0.00 0.00 42.59 4.57
2747 5080 7.524294 AAAGTTGCACTTTCACTTGTATTTG 57.476 32.000 1.61 0.00 44.47 2.32
2782 5115 5.520376 AGAAACCTCTGAAAACCAATGTG 57.480 39.130 0.00 0.00 0.00 3.21
2819 5154 1.756538 GGGCTGTGGTTGGGAATAATG 59.243 52.381 0.00 0.00 0.00 1.90
2888 5223 1.133792 ACCAACTGGGACAAAGAGGTG 60.134 52.381 0.00 0.00 38.70 4.00
2895 5237 1.408969 GGACAAAGAGGTGGGCAAAA 58.591 50.000 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.673874 AAGTATACTTTGGCTCTGGTAGCACTG 62.674 44.444 12.50 0.00 42.68 3.66
5 6 7.765282 AAGTATACTTTGGCTCTGGTAGCACT 61.765 42.308 12.50 0.00 42.68 4.40
6 7 5.627040 AAGTATACTTTGGCTCTGGTAGCAC 60.627 44.000 12.50 0.00 42.68 4.40
7 8 4.469945 AAGTATACTTTGGCTCTGGTAGCA 59.530 41.667 12.50 0.00 42.68 3.49
8 9 5.024785 AAGTATACTTTGGCTCTGGTAGC 57.975 43.478 12.50 0.00 41.13 3.58
9 10 7.952671 TGATAAGTATACTTTGGCTCTGGTAG 58.047 38.462 22.66 0.00 37.40 3.18
10 11 7.907841 TGATAAGTATACTTTGGCTCTGGTA 57.092 36.000 22.66 1.85 37.40 3.25
11 12 6.808321 TGATAAGTATACTTTGGCTCTGGT 57.192 37.500 22.66 0.00 37.40 4.00
12 13 7.047891 TGTTGATAAGTATACTTTGGCTCTGG 58.952 38.462 22.66 0.00 37.40 3.86
13 14 7.981789 TCTGTTGATAAGTATACTTTGGCTCTG 59.018 37.037 22.66 13.87 37.40 3.35
14 15 8.079211 TCTGTTGATAAGTATACTTTGGCTCT 57.921 34.615 22.66 0.00 37.40 4.09
15 16 8.894768 ATCTGTTGATAAGTATACTTTGGCTC 57.105 34.615 22.66 14.32 37.40 4.70
16 17 8.486210 TGATCTGTTGATAAGTATACTTTGGCT 58.514 33.333 22.66 6.44 37.40 4.75
17 18 8.662781 TGATCTGTTGATAAGTATACTTTGGC 57.337 34.615 22.66 12.78 37.40 4.52
18 19 8.768955 GCTGATCTGTTGATAAGTATACTTTGG 58.231 37.037 22.66 6.61 34.34 3.28
19 20 9.539825 AGCTGATCTGTTGATAAGTATACTTTG 57.460 33.333 22.66 6.03 34.34 2.77
21 22 9.757227 GAAGCTGATCTGTTGATAAGTATACTT 57.243 33.333 21.35 21.35 34.34 2.24
22 23 9.142014 AGAAGCTGATCTGTTGATAAGTATACT 57.858 33.333 0.00 0.00 34.34 2.12
27 28 9.323985 GATTTAGAAGCTGATCTGTTGATAAGT 57.676 33.333 0.00 0.00 34.34 2.24
28 29 9.322773 TGATTTAGAAGCTGATCTGTTGATAAG 57.677 33.333 0.00 0.00 34.84 1.73
29 30 9.842775 ATGATTTAGAAGCTGATCTGTTGATAA 57.157 29.630 0.00 0.00 32.19 1.75
30 31 9.842775 AATGATTTAGAAGCTGATCTGTTGATA 57.157 29.630 0.00 0.00 32.19 2.15
31 32 8.749026 AATGATTTAGAAGCTGATCTGTTGAT 57.251 30.769 0.00 0.00 35.26 2.57
32 33 8.456471 CAAATGATTTAGAAGCTGATCTGTTGA 58.544 33.333 0.00 0.00 0.00 3.18
33 34 8.456471 TCAAATGATTTAGAAGCTGATCTGTTG 58.544 33.333 0.00 2.80 0.00 3.33
34 35 8.457261 GTCAAATGATTTAGAAGCTGATCTGTT 58.543 33.333 0.00 0.00 0.00 3.16
35 36 7.066766 GGTCAAATGATTTAGAAGCTGATCTGT 59.933 37.037 0.00 0.00 0.00 3.41
36 37 7.066645 TGGTCAAATGATTTAGAAGCTGATCTG 59.933 37.037 0.00 0.00 0.00 2.90
37 38 7.114754 TGGTCAAATGATTTAGAAGCTGATCT 58.885 34.615 0.00 0.00 0.00 2.75
38 39 7.325660 TGGTCAAATGATTTAGAAGCTGATC 57.674 36.000 0.00 0.00 0.00 2.92
39 40 7.893124 ATGGTCAAATGATTTAGAAGCTGAT 57.107 32.000 0.00 0.00 0.00 2.90
40 41 7.707624 AATGGTCAAATGATTTAGAAGCTGA 57.292 32.000 0.00 0.00 0.00 4.26
41 42 8.767478 AAAATGGTCAAATGATTTAGAAGCTG 57.233 30.769 0.00 0.00 0.00 4.24
42 43 8.587608 TGAAAATGGTCAAATGATTTAGAAGCT 58.412 29.630 0.00 0.00 0.00 3.74
43 44 8.761575 TGAAAATGGTCAAATGATTTAGAAGC 57.238 30.769 0.00 0.00 0.00 3.86
46 47 9.153721 GCATTGAAAATGGTCAAATGATTTAGA 57.846 29.630 2.41 0.00 40.76 2.10
47 48 9.158233 AGCATTGAAAATGGTCAAATGATTTAG 57.842 29.630 0.00 0.00 40.76 1.85
48 49 9.504708 AAGCATTGAAAATGGTCAAATGATTTA 57.495 25.926 5.25 0.00 40.76 1.40
49 50 7.989416 AGCATTGAAAATGGTCAAATGATTT 57.011 28.000 0.00 0.00 40.76 2.17
50 51 7.989416 AAGCATTGAAAATGGTCAAATGATT 57.011 28.000 5.25 0.00 40.76 2.57
51 52 7.446013 ACAAAGCATTGAAAATGGTCAAATGAT 59.554 29.630 8.96 0.00 40.76 2.45
52 53 6.766944 ACAAAGCATTGAAAATGGTCAAATGA 59.233 30.769 8.96 0.00 40.76 2.57
53 54 6.961576 ACAAAGCATTGAAAATGGTCAAATG 58.038 32.000 8.96 5.74 40.76 2.32
54 55 8.723311 CATACAAAGCATTGAAAATGGTCAAAT 58.277 29.630 8.96 0.00 40.76 2.32
55 56 7.930325 TCATACAAAGCATTGAAAATGGTCAAA 59.070 29.630 8.96 0.00 40.76 2.69
56 57 7.384660 GTCATACAAAGCATTGAAAATGGTCAA 59.615 33.333 8.96 0.00 41.59 3.18
57 58 6.867816 GTCATACAAAGCATTGAAAATGGTCA 59.132 34.615 8.96 0.00 38.94 4.02
58 59 6.033831 CGTCATACAAAGCATTGAAAATGGTC 59.966 38.462 8.96 5.87 38.94 4.02
59 60 5.863397 CGTCATACAAAGCATTGAAAATGGT 59.137 36.000 8.96 0.00 38.94 3.55
60 61 5.289193 CCGTCATACAAAGCATTGAAAATGG 59.711 40.000 8.96 2.48 38.94 3.16
61 62 5.863397 ACCGTCATACAAAGCATTGAAAATG 59.137 36.000 8.96 8.90 38.94 2.32
62 63 6.024552 ACCGTCATACAAAGCATTGAAAAT 57.975 33.333 8.96 0.00 38.94 1.82
63 64 5.446143 ACCGTCATACAAAGCATTGAAAA 57.554 34.783 8.96 0.00 38.94 2.29
64 65 5.009110 TGAACCGTCATACAAAGCATTGAAA 59.991 36.000 8.96 0.00 38.94 2.69
65 66 4.517075 TGAACCGTCATACAAAGCATTGAA 59.483 37.500 8.96 0.00 38.94 2.69
66 67 4.068599 TGAACCGTCATACAAAGCATTGA 58.931 39.130 8.96 0.00 38.94 2.57
67 68 4.154015 TCTGAACCGTCATACAAAGCATTG 59.846 41.667 0.00 0.00 36.47 2.82
68 69 4.323417 TCTGAACCGTCATACAAAGCATT 58.677 39.130 0.00 0.00 31.85 3.56
69 70 3.937814 TCTGAACCGTCATACAAAGCAT 58.062 40.909 0.00 0.00 31.85 3.79
70 71 3.394674 TCTGAACCGTCATACAAAGCA 57.605 42.857 0.00 0.00 31.85 3.91
71 72 5.348986 TCTATCTGAACCGTCATACAAAGC 58.651 41.667 0.00 0.00 31.85 3.51
72 73 7.203218 TCATCTATCTGAACCGTCATACAAAG 58.797 38.462 0.00 0.00 31.85 2.77
73 74 7.107639 TCATCTATCTGAACCGTCATACAAA 57.892 36.000 0.00 0.00 31.85 2.83
74 75 6.709018 TCATCTATCTGAACCGTCATACAA 57.291 37.500 0.00 0.00 31.85 2.41
75 76 6.490040 TCATCATCTATCTGAACCGTCATACA 59.510 38.462 0.00 0.00 31.85 2.29
76 77 6.804295 GTCATCATCTATCTGAACCGTCATAC 59.196 42.308 0.00 0.00 31.85 2.39
77 78 6.490040 TGTCATCATCTATCTGAACCGTCATA 59.510 38.462 0.00 0.00 31.85 2.15
78 79 5.302823 TGTCATCATCTATCTGAACCGTCAT 59.697 40.000 0.00 0.00 31.85 3.06
79 80 4.644685 TGTCATCATCTATCTGAACCGTCA 59.355 41.667 0.00 0.00 0.00 4.35
80 81 5.188327 TGTCATCATCTATCTGAACCGTC 57.812 43.478 0.00 0.00 0.00 4.79
81 82 5.777802 GATGTCATCATCTATCTGAACCGT 58.222 41.667 8.00 0.00 44.86 4.83
104 105 9.793252 CCTCCAGAACAACAAAATATTAATCAG 57.207 33.333 0.00 0.00 0.00 2.90
105 106 9.308000 ACCTCCAGAACAACAAAATATTAATCA 57.692 29.630 0.00 0.00 0.00 2.57
109 110 9.757227 CAAAACCTCCAGAACAACAAAATATTA 57.243 29.630 0.00 0.00 0.00 0.98
110 111 8.264347 ACAAAACCTCCAGAACAACAAAATATT 58.736 29.630 0.00 0.00 0.00 1.28
111 112 7.791029 ACAAAACCTCCAGAACAACAAAATAT 58.209 30.769 0.00 0.00 0.00 1.28
112 113 7.123547 AGACAAAACCTCCAGAACAACAAAATA 59.876 33.333 0.00 0.00 0.00 1.40
113 114 6.048732 ACAAAACCTCCAGAACAACAAAAT 57.951 33.333 0.00 0.00 0.00 1.82
114 115 5.245075 AGACAAAACCTCCAGAACAACAAAA 59.755 36.000 0.00 0.00 0.00 2.44
115 116 4.770010 AGACAAAACCTCCAGAACAACAAA 59.230 37.500 0.00 0.00 0.00 2.83
116 117 4.340617 AGACAAAACCTCCAGAACAACAA 58.659 39.130 0.00 0.00 0.00 2.83
117 118 3.963129 AGACAAAACCTCCAGAACAACA 58.037 40.909 0.00 0.00 0.00 3.33
118 119 7.606456 TCATATAGACAAAACCTCCAGAACAAC 59.394 37.037 0.00 0.00 0.00 3.32
119 120 7.685481 TCATATAGACAAAACCTCCAGAACAA 58.315 34.615 0.00 0.00 0.00 2.83
120 121 7.252612 TCATATAGACAAAACCTCCAGAACA 57.747 36.000 0.00 0.00 0.00 3.18
121 122 8.561738 TTTCATATAGACAAAACCTCCAGAAC 57.438 34.615 0.00 0.00 0.00 3.01
122 123 9.581289 TTTTTCATATAGACAAAACCTCCAGAA 57.419 29.630 0.00 0.00 0.00 3.02
123 124 9.753674 ATTTTTCATATAGACAAAACCTCCAGA 57.246 29.630 0.00 0.00 30.37 3.86
152 153 7.377398 TGCTAATCTTTATTTGCAAGAAAGCA 58.623 30.769 22.11 19.06 46.24 3.91
153 154 7.816945 TGCTAATCTTTATTTGCAAGAAAGC 57.183 32.000 22.11 17.39 46.24 3.51
160 161 9.089601 CATCAAATGTGCTAATCTTTATTTGCA 57.910 29.630 3.65 3.65 46.77 4.08
161 162 8.545420 CCATCAAATGTGCTAATCTTTATTTGC 58.455 33.333 0.00 0.00 42.12 3.68
162 163 9.590451 ACCATCAAATGTGCTAATCTTTATTTG 57.410 29.630 0.00 0.00 37.04 2.32
166 167 9.461312 ACTTACCATCAAATGTGCTAATCTTTA 57.539 29.630 0.00 0.00 0.00 1.85
167 168 8.353423 ACTTACCATCAAATGTGCTAATCTTT 57.647 30.769 0.00 0.00 0.00 2.52
168 169 7.611467 TGACTTACCATCAAATGTGCTAATCTT 59.389 33.333 0.00 0.00 0.00 2.40
169 170 7.112122 TGACTTACCATCAAATGTGCTAATCT 58.888 34.615 0.00 0.00 0.00 2.40
170 171 7.280876 TCTGACTTACCATCAAATGTGCTAATC 59.719 37.037 0.00 0.00 0.00 1.75
171 172 7.066284 GTCTGACTTACCATCAAATGTGCTAAT 59.934 37.037 0.00 0.00 0.00 1.73
172 173 6.371548 GTCTGACTTACCATCAAATGTGCTAA 59.628 38.462 0.00 0.00 0.00 3.09
173 174 5.874810 GTCTGACTTACCATCAAATGTGCTA 59.125 40.000 0.00 0.00 0.00 3.49
174 175 4.697352 GTCTGACTTACCATCAAATGTGCT 59.303 41.667 0.00 0.00 0.00 4.40
175 176 4.436050 CGTCTGACTTACCATCAAATGTGC 60.436 45.833 6.21 0.00 0.00 4.57
176 177 4.690748 ACGTCTGACTTACCATCAAATGTG 59.309 41.667 6.21 0.00 0.00 3.21
177 178 4.690748 CACGTCTGACTTACCATCAAATGT 59.309 41.667 6.21 0.00 0.00 2.71
178 179 4.436050 GCACGTCTGACTTACCATCAAATG 60.436 45.833 6.21 0.00 0.00 2.32
179 180 3.684788 GCACGTCTGACTTACCATCAAAT 59.315 43.478 6.21 0.00 0.00 2.32
180 181 3.064207 GCACGTCTGACTTACCATCAAA 58.936 45.455 6.21 0.00 0.00 2.69
181 182 2.036604 TGCACGTCTGACTTACCATCAA 59.963 45.455 6.21 0.00 0.00 2.57
182 183 1.616374 TGCACGTCTGACTTACCATCA 59.384 47.619 6.21 0.00 0.00 3.07
183 184 2.363788 TGCACGTCTGACTTACCATC 57.636 50.000 6.21 0.00 0.00 3.51
184 185 3.002791 CAATGCACGTCTGACTTACCAT 58.997 45.455 6.21 0.74 0.00 3.55
185 186 2.412870 CAATGCACGTCTGACTTACCA 58.587 47.619 6.21 0.00 0.00 3.25
186 187 1.128692 GCAATGCACGTCTGACTTACC 59.871 52.381 0.00 0.00 0.00 2.85
187 188 1.798223 TGCAATGCACGTCTGACTTAC 59.202 47.619 2.72 0.00 31.71 2.34
188 189 2.162319 TGCAATGCACGTCTGACTTA 57.838 45.000 2.72 0.00 31.71 2.24
189 190 3.005205 TGCAATGCACGTCTGACTT 57.995 47.368 2.72 0.00 31.71 3.01
190 191 4.777384 TGCAATGCACGTCTGACT 57.223 50.000 2.72 0.00 31.71 3.41
205 206 1.429463 ACTAGTAAGCTTGCACGTGC 58.571 50.000 33.11 33.11 42.50 5.34
206 207 3.493129 TGAAACTAGTAAGCTTGCACGTG 59.507 43.478 17.21 12.28 0.00 4.49
207 208 3.724374 TGAAACTAGTAAGCTTGCACGT 58.276 40.909 17.21 9.78 0.00 4.49
208 209 4.725556 TTGAAACTAGTAAGCTTGCACG 57.274 40.909 17.21 9.15 0.00 5.34
209 210 9.626045 AATTTATTGAAACTAGTAAGCTTGCAC 57.374 29.630 17.21 4.19 0.00 4.57
210 211 9.624697 CAATTTATTGAAACTAGTAAGCTTGCA 57.375 29.630 17.21 2.25 40.14 4.08
211 212 8.587111 GCAATTTATTGAAACTAGTAAGCTTGC 58.413 33.333 9.86 8.07 40.14 4.01
212 213 9.624697 TGCAATTTATTGAAACTAGTAAGCTTG 57.375 29.630 9.86 0.00 40.14 4.01
213 214 9.626045 GTGCAATTTATTGAAACTAGTAAGCTT 57.374 29.630 3.48 3.48 40.14 3.74
214 215 9.014297 AGTGCAATTTATTGAAACTAGTAAGCT 57.986 29.630 6.64 0.00 40.14 3.74
215 216 9.065871 CAGTGCAATTTATTGAAACTAGTAAGC 57.934 33.333 6.64 0.00 40.14 3.09
225 226 9.213799 GGGTTATTTTCAGTGCAATTTATTGAA 57.786 29.630 6.64 0.00 40.14 2.69
226 227 7.543868 CGGGTTATTTTCAGTGCAATTTATTGA 59.456 33.333 6.64 0.00 40.14 2.57
227 228 7.543868 TCGGGTTATTTTCAGTGCAATTTATTG 59.456 33.333 0.00 0.00 40.66 1.90
228 229 7.607250 TCGGGTTATTTTCAGTGCAATTTATT 58.393 30.769 0.00 0.00 0.00 1.40
229 230 7.164230 TCGGGTTATTTTCAGTGCAATTTAT 57.836 32.000 0.00 0.00 0.00 1.40
230 231 6.576662 TCGGGTTATTTTCAGTGCAATTTA 57.423 33.333 0.00 0.00 0.00 1.40
231 232 5.461032 TCGGGTTATTTTCAGTGCAATTT 57.539 34.783 0.00 0.00 0.00 1.82
294 295 8.744568 AAAAATCAAAAGCTGAAACCCAATAA 57.255 26.923 0.00 0.00 37.67 1.40
320 321 1.069204 GGCAGCAGATTCTCATACGGA 59.931 52.381 0.00 0.00 0.00 4.69
321 322 1.069823 AGGCAGCAGATTCTCATACGG 59.930 52.381 0.00 0.00 0.00 4.02
436 438 1.255342 CACGACCTATTTCATGACGCG 59.745 52.381 3.53 3.53 0.00 6.01
454 461 0.669625 GAACCCCTGACGTGCTACAC 60.670 60.000 0.00 0.00 0.00 2.90
455 462 1.116536 TGAACCCCTGACGTGCTACA 61.117 55.000 0.00 0.00 0.00 2.74
477 484 0.165295 TCTCGTCGTCATGTGTCGTC 59.835 55.000 0.00 0.00 0.00 4.20
479 486 1.128724 GCTCTCGTCGTCATGTGTCG 61.129 60.000 0.00 0.00 0.00 4.35
526 533 5.281727 AGTCCAAAAAGCTCGAAATTTCAC 58.718 37.500 17.99 6.84 0.00 3.18
545 583 3.066760 GCCCATTTGCACTATTGTAGTCC 59.933 47.826 0.00 0.00 36.76 3.85
551 589 3.549423 CGATCAGCCCATTTGCACTATTG 60.549 47.826 0.00 0.00 0.00 1.90
582 621 6.650390 GCAAACTTGGATGGAATTGTTAACAT 59.350 34.615 9.56 0.00 0.00 2.71
590 678 3.157087 ACGAGCAAACTTGGATGGAATT 58.843 40.909 0.00 0.00 0.00 2.17
602 690 6.955963 CACAATAAACTATCTGACGAGCAAAC 59.044 38.462 0.00 0.00 0.00 2.93
703 851 1.525995 CAGACGCACAAACCTGGGT 60.526 57.895 0.00 0.00 39.86 4.51
705 853 0.738389 AAACAGACGCACAAACCTGG 59.262 50.000 0.00 0.00 0.00 4.45
706 854 1.268539 GGAAACAGACGCACAAACCTG 60.269 52.381 0.00 0.00 0.00 4.00
707 855 1.021968 GGAAACAGACGCACAAACCT 58.978 50.000 0.00 0.00 0.00 3.50
708 856 1.002792 GAGGAAACAGACGCACAAACC 60.003 52.381 0.00 0.00 0.00 3.27
709 857 1.940613 AGAGGAAACAGACGCACAAAC 59.059 47.619 0.00 0.00 0.00 2.93
710 858 2.325583 AGAGGAAACAGACGCACAAA 57.674 45.000 0.00 0.00 0.00 2.83
711 859 1.939934 CAAGAGGAAACAGACGCACAA 59.060 47.619 0.00 0.00 0.00 3.33
712 860 1.581934 CAAGAGGAAACAGACGCACA 58.418 50.000 0.00 0.00 0.00 4.57
747 898 2.240162 GACCCGCCACTCGAGGAAAT 62.240 60.000 18.41 0.00 41.67 2.17
792 943 4.732672 AAGTGAACGGAGGGAGTAATAC 57.267 45.455 0.00 0.00 0.00 1.89
795 946 3.135167 ACAAAAGTGAACGGAGGGAGTAA 59.865 43.478 0.00 0.00 0.00 2.24
797 948 1.489230 ACAAAAGTGAACGGAGGGAGT 59.511 47.619 0.00 0.00 0.00 3.85
799 950 3.135167 ACTTACAAAAGTGAACGGAGGGA 59.865 43.478 0.00 0.00 44.40 4.20
800 951 3.473625 ACTTACAAAAGTGAACGGAGGG 58.526 45.455 0.00 0.00 44.40 4.30
801 952 4.124238 TGACTTACAAAAGTGAACGGAGG 58.876 43.478 0.00 0.00 46.09 4.30
802 953 5.924475 ATGACTTACAAAAGTGAACGGAG 57.076 39.130 0.00 0.00 46.09 4.63
803 954 6.316640 TGAAATGACTTACAAAAGTGAACGGA 59.683 34.615 0.00 0.00 46.09 4.69
804 955 6.491394 TGAAATGACTTACAAAAGTGAACGG 58.509 36.000 0.00 0.00 46.09 4.44
805 956 7.373441 GTCTGAAATGACTTACAAAAGTGAACG 59.627 37.037 0.00 0.00 46.09 3.95
806 957 8.181573 TGTCTGAAATGACTTACAAAAGTGAAC 58.818 33.333 0.00 0.00 46.09 3.18
807 958 8.275015 TGTCTGAAATGACTTACAAAAGTGAA 57.725 30.769 0.00 0.00 46.09 3.18
808 959 7.857734 TGTCTGAAATGACTTACAAAAGTGA 57.142 32.000 0.00 0.00 46.09 3.41
809 960 8.184192 AGTTGTCTGAAATGACTTACAAAAGTG 58.816 33.333 0.00 0.00 46.09 3.16
811 962 8.397906 TCAGTTGTCTGAAATGACTTACAAAAG 58.602 33.333 0.00 0.00 46.17 2.27
813 964 7.857734 TCAGTTGTCTGAAATGACTTACAAA 57.142 32.000 0.00 0.00 46.17 2.83
827 978 7.301054 CAAAGTAGCCTATTTTCAGTTGTCTG 58.699 38.462 0.00 0.00 42.54 3.51
830 981 5.534654 TGCAAAGTAGCCTATTTTCAGTTGT 59.465 36.000 0.00 0.00 0.00 3.32
831 982 5.858581 GTGCAAAGTAGCCTATTTTCAGTTG 59.141 40.000 0.00 0.00 0.00 3.16
832 983 5.334879 CGTGCAAAGTAGCCTATTTTCAGTT 60.335 40.000 0.00 0.00 0.00 3.16
833 984 4.154195 CGTGCAAAGTAGCCTATTTTCAGT 59.846 41.667 0.00 0.00 0.00 3.41
834 985 4.651994 CGTGCAAAGTAGCCTATTTTCAG 58.348 43.478 0.00 0.00 0.00 3.02
835 986 3.119990 GCGTGCAAAGTAGCCTATTTTCA 60.120 43.478 0.00 0.00 0.00 2.69
836 987 3.127030 AGCGTGCAAAGTAGCCTATTTTC 59.873 43.478 0.00 0.00 0.00 2.29
837 988 3.081804 AGCGTGCAAAGTAGCCTATTTT 58.918 40.909 0.00 0.00 0.00 1.82
838 989 2.420022 CAGCGTGCAAAGTAGCCTATTT 59.580 45.455 0.00 0.00 0.00 1.40
841 992 0.320374 ACAGCGTGCAAAGTAGCCTA 59.680 50.000 0.00 0.00 0.00 3.93
842 993 0.951040 GACAGCGTGCAAAGTAGCCT 60.951 55.000 0.00 0.00 0.00 4.58
843 994 0.951040 AGACAGCGTGCAAAGTAGCC 60.951 55.000 0.00 0.00 0.00 3.93
844 995 0.164647 CAGACAGCGTGCAAAGTAGC 59.835 55.000 0.00 0.00 0.00 3.58
845 996 1.783284 TCAGACAGCGTGCAAAGTAG 58.217 50.000 0.00 0.00 0.00 2.57
846 997 2.232756 TTCAGACAGCGTGCAAAGTA 57.767 45.000 0.00 0.00 0.00 2.24
850 1001 2.221169 AGAATTTCAGACAGCGTGCAA 58.779 42.857 0.00 0.00 0.00 4.08
851 1002 1.882912 AGAATTTCAGACAGCGTGCA 58.117 45.000 0.00 0.00 0.00 4.57
852 1003 2.224079 TGAAGAATTTCAGACAGCGTGC 59.776 45.455 0.00 0.00 38.37 5.34
862 1013 6.751514 TTTATAAGGCGCTGAAGAATTTCA 57.248 33.333 7.64 0.00 40.92 2.69
863 1014 7.218963 CACTTTTATAAGGCGCTGAAGAATTTC 59.781 37.037 7.64 0.00 35.61 2.17
866 1017 5.880332 TCACTTTTATAAGGCGCTGAAGAAT 59.120 36.000 7.64 0.00 35.61 2.40
867 1018 5.242434 TCACTTTTATAAGGCGCTGAAGAA 58.758 37.500 7.64 0.00 35.61 2.52
868 1019 4.827692 TCACTTTTATAAGGCGCTGAAGA 58.172 39.130 7.64 0.00 35.61 2.87
869 1020 5.106712 TGTTCACTTTTATAAGGCGCTGAAG 60.107 40.000 7.64 4.09 35.61 3.02
872 1023 4.391830 TCTGTTCACTTTTATAAGGCGCTG 59.608 41.667 7.64 0.00 35.61 5.18
874 1025 4.201822 CCTCTGTTCACTTTTATAAGGCGC 60.202 45.833 0.00 0.00 35.61 6.53
875 1026 4.332819 CCCTCTGTTCACTTTTATAAGGCG 59.667 45.833 0.00 0.00 35.61 5.52
876 1027 5.497474 TCCCTCTGTTCACTTTTATAAGGC 58.503 41.667 0.00 0.00 35.61 4.35
877 1028 6.712276 ACTCCCTCTGTTCACTTTTATAAGG 58.288 40.000 0.00 0.00 35.61 2.69
878 1029 8.532819 ACTACTCCCTCTGTTCACTTTTATAAG 58.467 37.037 0.00 0.00 37.40 1.73
879 1030 8.431910 ACTACTCCCTCTGTTCACTTTTATAA 57.568 34.615 0.00 0.00 0.00 0.98
881 1032 6.936968 ACTACTCCCTCTGTTCACTTTTAT 57.063 37.500 0.00 0.00 0.00 1.40
884 1035 9.134055 GTATATACTACTCCCTCTGTTCACTTT 57.866 37.037 5.58 0.00 0.00 2.66
885 1036 8.504409 AGTATATACTACTCCCTCTGTTCACTT 58.496 37.037 13.88 0.00 34.13 3.16
886 1037 7.940137 CAGTATATACTACTCCCTCTGTTCACT 59.060 40.741 15.03 0.00 34.13 3.41
887 1038 7.720515 ACAGTATATACTACTCCCTCTGTTCAC 59.279 40.741 15.03 0.00 34.13 3.18
888 1039 7.813331 ACAGTATATACTACTCCCTCTGTTCA 58.187 38.462 15.03 0.00 34.13 3.18
893 1044 7.390013 TGTGACAGTATATACTACTCCCTCT 57.610 40.000 15.03 0.00 34.13 3.69
894 1045 8.351461 GTTTGTGACAGTATATACTACTCCCTC 58.649 40.741 15.03 4.56 34.13 4.30
895 1046 7.837689 TGTTTGTGACAGTATATACTACTCCCT 59.162 37.037 15.03 0.00 34.13 4.20
896 1047 8.004087 TGTTTGTGACAGTATATACTACTCCC 57.996 38.462 15.03 5.42 34.13 4.30
897 1048 9.464714 CATGTTTGTGACAGTATATACTACTCC 57.535 37.037 15.03 5.23 42.62 3.85
912 1063 8.349983 GTGGGGTATATTTATCATGTTTGTGAC 58.650 37.037 0.00 0.00 0.00 3.67
943 1096 5.948842 AGAAGGTGGGTGTTAATTAACAGT 58.051 37.500 27.29 9.87 45.82 3.55
1302 1466 9.630098 GTTGATGTTAGTTGTTCATTCATTCAT 57.370 29.630 0.00 0.00 0.00 2.57
1303 1467 8.081633 GGTTGATGTTAGTTGTTCATTCATTCA 58.918 33.333 0.00 0.00 0.00 2.57
1304 1468 8.299570 AGGTTGATGTTAGTTGTTCATTCATTC 58.700 33.333 0.00 0.00 0.00 2.67
1305 1469 8.084073 CAGGTTGATGTTAGTTGTTCATTCATT 58.916 33.333 0.00 0.00 0.00 2.57
1395 1570 2.192861 CGAAGGCTTGCCCACACAA 61.193 57.895 3.46 0.00 35.39 3.33
1511 1686 0.398381 AGAGCAGGAGGATCTGTCCC 60.398 60.000 10.14 0.00 46.34 4.46
1514 1689 1.110442 CGAAGAGCAGGAGGATCTGT 58.890 55.000 0.00 0.00 42.62 3.41
1595 1770 0.657840 GCAGCAATCCGTAAGCGAAT 59.342 50.000 0.00 0.00 41.33 3.34
1608 1783 1.667830 GGACGTAGCACTGCAGCAA 60.668 57.895 15.27 0.00 36.85 3.91
1796 1971 5.517477 GGATGGAGAGACCCTGATGTAGATA 60.517 48.000 0.00 0.00 38.00 1.98
1797 1972 3.981516 TGGAGAGACCCTGATGTAGAT 57.018 47.619 0.00 0.00 38.00 1.98
1798 1973 3.437198 GGATGGAGAGACCCTGATGTAGA 60.437 52.174 0.00 0.00 38.00 2.59
1799 1974 2.896685 GGATGGAGAGACCCTGATGTAG 59.103 54.545 0.00 0.00 38.00 2.74
1800 1975 2.520120 AGGATGGAGAGACCCTGATGTA 59.480 50.000 0.00 0.00 38.00 2.29
1801 1976 1.293458 AGGATGGAGAGACCCTGATGT 59.707 52.381 0.00 0.00 38.00 3.06
1802 1977 1.693062 CAGGATGGAGAGACCCTGATG 59.307 57.143 0.00 0.00 46.84 3.07
1803 1978 2.039070 GCAGGATGGAGAGACCCTGAT 61.039 57.143 11.07 0.00 46.84 2.90
1804 1979 0.689080 GCAGGATGGAGAGACCCTGA 60.689 60.000 11.07 0.00 46.84 3.86
1805 1980 0.979709 TGCAGGATGGAGAGACCCTG 60.980 60.000 0.00 0.00 46.67 4.45
1806 1981 1.393746 TGCAGGATGGAGAGACCCT 59.606 57.895 0.00 0.00 38.00 4.34
1807 1982 4.056805 TGCAGGATGGAGAGACCC 57.943 61.111 0.00 0.00 38.00 4.46
1878 2067 1.271656 AGATGGCAAAGCAAGCTTCAC 59.728 47.619 7.88 3.34 34.84 3.18
1908 2097 5.356426 GGCACAAACTAAAACTCACCAAAT 58.644 37.500 0.00 0.00 0.00 2.32
1943 3866 7.934665 TGGAGCGCAAAAATAAATATCTACCTA 59.065 33.333 11.47 0.00 0.00 3.08
1951 3989 6.037720 TCGAAGATGGAGCGCAAAAATAAATA 59.962 34.615 11.47 0.00 0.00 1.40
1952 3990 5.036737 CGAAGATGGAGCGCAAAAATAAAT 58.963 37.500 11.47 0.00 0.00 1.40
1953 3991 4.155099 TCGAAGATGGAGCGCAAAAATAAA 59.845 37.500 11.47 0.00 0.00 1.40
1956 3994 2.083774 TCGAAGATGGAGCGCAAAAAT 58.916 42.857 11.47 0.00 0.00 1.82
1961 3999 1.153765 CAGTCGAAGATGGAGCGCA 60.154 57.895 11.47 0.00 40.67 6.09
2245 4511 0.107831 GCGTACCCCCATAGATTGCA 59.892 55.000 0.00 0.00 0.00 4.08
2312 4578 1.000394 TGATCGACACGGAAAGAAGCA 60.000 47.619 0.00 0.00 0.00 3.91
2338 4604 7.176515 ACCTGAAATAACACATTGCAGATTGTA 59.823 33.333 6.55 0.00 36.93 2.41
2356 4622 7.906327 AGTTATTTGGTGCATTTACCTGAAAT 58.094 30.769 0.00 0.00 41.43 2.17
2388 4663 6.014584 TCAGGAAATAGTCTGCAAGTACTTGA 60.015 38.462 34.43 19.80 42.93 3.02
2459 4744 3.942748 ACGAGACAAGATAGACTGGAGTC 59.057 47.826 0.00 0.00 45.08 3.36
2475 4765 7.356557 CGTTCATCGAAATGATAAGTACGAGAC 60.357 40.741 4.86 0.00 40.81 3.36
2477 4767 6.631636 TCGTTCATCGAAATGATAAGTACGAG 59.368 38.462 8.17 0.00 41.56 4.18
2478 4768 6.488817 TCGTTCATCGAAATGATAAGTACGA 58.511 36.000 8.17 8.17 42.96 3.43
2704 5010 7.331687 GCAACTTTCTGTATGCATGGTAAAATT 59.668 33.333 10.16 0.00 38.63 1.82
2705 5011 6.813152 GCAACTTTCTGTATGCATGGTAAAAT 59.187 34.615 10.16 0.00 38.63 1.82
2706 5012 6.155827 GCAACTTTCTGTATGCATGGTAAAA 58.844 36.000 10.16 4.42 38.63 1.52
2707 5013 5.242615 TGCAACTTTCTGTATGCATGGTAAA 59.757 36.000 10.16 4.04 43.32 2.01
2747 5080 6.638610 TCAGAGGTTTCTTCAGATGAGAATC 58.361 40.000 0.00 0.00 0.00 2.52
2782 5115 1.202818 GCCCCTGGAGTTCATACCATC 60.203 57.143 0.00 0.00 35.54 3.51
2819 5154 2.281208 TGCACAACTACCCCGCAC 60.281 61.111 0.00 0.00 0.00 5.34
2895 5237 1.607467 GCATGGCAGAGGTTTGGGT 60.607 57.895 0.00 0.00 0.00 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.