Multiple sequence alignment - TraesCS5B01G370500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G370500 chr5B 100.000 2684 0 0 1 2684 549586499 549589182 0.000000e+00 4957.0
1 TraesCS5B01G370500 chr5D 86.010 1208 110 34 958 2138 449667172 449668347 0.000000e+00 1240.0
2 TraesCS5B01G370500 chr5D 89.266 708 41 18 1049 1739 449649778 449650467 0.000000e+00 854.0
3 TraesCS5B01G370500 chr5D 86.667 690 57 17 790 1460 449692225 449692898 0.000000e+00 732.0
4 TraesCS5B01G370500 chr5D 96.217 423 11 3 2265 2684 449668593 449669013 0.000000e+00 688.0
5 TraesCS5B01G370500 chr5D 86.450 369 21 11 2 367 449626857 449627199 7.010000e-101 377.0
6 TraesCS5B01G370500 chr5D 82.759 435 39 10 1462 1885 449692966 449693375 3.290000e-94 355.0
7 TraesCS5B01G370500 chr5D 93.548 124 8 0 400 523 431780549 431780426 4.560000e-43 185.0
8 TraesCS5B01G370500 chr5D 92.913 127 8 1 400 526 277619800 277619925 1.640000e-42 183.0
9 TraesCS5B01G370500 chr5D 90.370 135 13 0 401 535 448625532 448625398 7.640000e-41 178.0
10 TraesCS5B01G370500 chr5D 87.500 160 13 2 198 357 449691734 449691886 7.640000e-41 178.0
11 TraesCS5B01G370500 chr5D 92.308 39 0 2 366 401 241946274 241946312 5.000000e-03 52.8
12 TraesCS5B01G370500 chr5A 89.318 983 69 15 892 1872 568890365 568891313 0.000000e+00 1201.0
13 TraesCS5B01G370500 chr5A 85.426 693 64 21 790 1460 568681717 568682394 0.000000e+00 686.0
14 TraesCS5B01G370500 chr5A 80.903 775 76 21 1948 2684 568812256 568812996 1.820000e-151 545.0
15 TraesCS5B01G370500 chr5A 86.905 504 36 14 958 1460 568799898 568800372 3.040000e-149 538.0
16 TraesCS5B01G370500 chr5A 86.246 349 22 4 2339 2684 568891856 568892181 3.290000e-94 355.0
17 TraesCS5B01G370500 chr5A 84.807 362 25 12 13 362 568680555 568680898 1.190000e-88 337.0
18 TraesCS5B01G370500 chr1D 92.913 127 9 0 400 526 311986651 311986777 4.560000e-43 185.0
19 TraesCS5B01G370500 chr4D 88.742 151 15 2 375 523 486020675 486020525 1.640000e-42 183.0
20 TraesCS5B01G370500 chr2D 91.667 132 11 0 404 535 414960382 414960251 1.640000e-42 183.0
21 TraesCS5B01G370500 chr3D 90.977 133 12 0 400 532 486424910 486424778 2.120000e-41 180.0
22 TraesCS5B01G370500 chr2B 90.977 133 12 0 400 532 235054308 235054176 2.120000e-41 180.0
23 TraesCS5B01G370500 chr2B 88.591 149 12 3 375 523 668766936 668767079 2.750000e-40 176.0
24 TraesCS5B01G370500 chr7D 89.916 119 11 1 405 523 71267162 71267045 4.630000e-33 152.0
25 TraesCS5B01G370500 chr4A 84.874 119 18 0 405 523 131237169 131237051 1.310000e-23 121.0
26 TraesCS5B01G370500 chr4A 96.875 32 1 0 375 406 70305935 70305904 1.000000e-03 54.7
27 TraesCS5B01G370500 chr4A 96.970 33 0 1 371 402 598290928 598290896 1.000000e-03 54.7
28 TraesCS5B01G370500 chr2A 94.444 36 2 0 366 401 754174000 754173965 3.730000e-04 56.5
29 TraesCS5B01G370500 chr6B 94.286 35 2 0 373 407 217540881 217540847 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G370500 chr5B 549586499 549589182 2683 False 4957.000000 4957 100.0000 1 2684 1 chr5B.!!$F1 2683
1 TraesCS5B01G370500 chr5D 449667172 449669013 1841 False 964.000000 1240 91.1135 958 2684 2 chr5D.!!$F5 1726
2 TraesCS5B01G370500 chr5D 449649778 449650467 689 False 854.000000 854 89.2660 1049 1739 1 chr5D.!!$F4 690
3 TraesCS5B01G370500 chr5D 449691734 449693375 1641 False 421.666667 732 85.6420 198 1885 3 chr5D.!!$F6 1687
4 TraesCS5B01G370500 chr5A 568890365 568892181 1816 False 778.000000 1201 87.7820 892 2684 2 chr5A.!!$F4 1792
5 TraesCS5B01G370500 chr5A 568812256 568812996 740 False 545.000000 545 80.9030 1948 2684 1 chr5A.!!$F2 736
6 TraesCS5B01G370500 chr5A 568680555 568682394 1839 False 511.500000 686 85.1165 13 1460 2 chr5A.!!$F3 1447

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
351 364 0.103208 CGAGCCTAGATTCGGTTGCT 59.897 55.0 7.67 0.0 33.39 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2187 3114 0.255604 ATGAACGGTGGATCCATGCA 59.744 50.0 19.62 7.42 35.57 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.600556 CGCCGCTGTATCATGTCAAATG 60.601 50.000 0.00 0.00 0.00 2.32
30 31 2.291465 CCGCTGTATCATGTCAAATGGG 59.709 50.000 0.00 0.00 0.00 4.00
35 36 6.397272 GCTGTATCATGTCAAATGGGAAAAA 58.603 36.000 0.00 0.00 0.00 1.94
36 37 6.532657 GCTGTATCATGTCAAATGGGAAAAAG 59.467 38.462 0.00 0.00 0.00 2.27
37 38 7.577426 GCTGTATCATGTCAAATGGGAAAAAGA 60.577 37.037 0.00 0.00 0.00 2.52
55 62 0.521735 GATGTTGACGCCTGGAAACC 59.478 55.000 0.00 0.00 0.00 3.27
58 65 0.250338 GTTGACGCCTGGAAACCTCT 60.250 55.000 0.00 0.00 0.00 3.69
81 88 5.438761 AGTTTTTCACACTGCCATCTAAC 57.561 39.130 0.00 0.00 0.00 2.34
86 93 0.673644 ACACTGCCATCTAACCGTGC 60.674 55.000 0.00 0.00 0.00 5.34
104 111 1.583967 CCGCGTTTTTGTTCGTGCA 60.584 52.632 4.92 0.00 36.45 4.57
115 122 2.749776 TGTTCGTGCAGAGATCGAAAA 58.250 42.857 10.23 3.21 43.34 2.29
116 123 2.475111 TGTTCGTGCAGAGATCGAAAAC 59.525 45.455 10.23 1.92 43.34 2.43
118 125 1.272490 TCGTGCAGAGATCGAAAACCT 59.728 47.619 0.00 0.00 0.00 3.50
119 126 1.656095 CGTGCAGAGATCGAAAACCTC 59.344 52.381 0.00 0.00 0.00 3.85
120 127 2.672478 CGTGCAGAGATCGAAAACCTCT 60.672 50.000 0.00 0.00 37.74 3.69
121 128 3.330267 GTGCAGAGATCGAAAACCTCTT 58.670 45.455 7.11 0.00 35.28 2.85
122 129 3.124297 GTGCAGAGATCGAAAACCTCTTG 59.876 47.826 7.11 5.53 35.28 3.02
123 130 2.675348 GCAGAGATCGAAAACCTCTTGG 59.325 50.000 7.11 0.00 35.28 3.61
124 131 3.617531 GCAGAGATCGAAAACCTCTTGGA 60.618 47.826 7.11 0.00 35.28 3.53
125 132 4.180057 CAGAGATCGAAAACCTCTTGGAG 58.820 47.826 7.11 0.00 35.28 3.86
132 139 0.402121 AAACCTCTTGGAGTCTGGGC 59.598 55.000 0.00 0.00 37.04 5.36
146 153 2.945668 GTCTGGGCGAGCTTAATCAATT 59.054 45.455 0.00 0.00 0.00 2.32
147 154 3.002759 GTCTGGGCGAGCTTAATCAATTC 59.997 47.826 0.00 0.00 0.00 2.17
240 253 1.061905 AGCCGGGATTCCATCATCCA 61.062 55.000 2.18 0.00 44.36 3.41
242 255 1.281867 GCCGGGATTCCATCATCCATA 59.718 52.381 2.18 0.00 44.36 2.74
244 257 2.356125 CCGGGATTCCATCATCCATACC 60.356 54.545 4.80 0.00 44.36 2.73
327 340 4.710695 TCTGCCGGTGTGCGTACG 62.711 66.667 11.84 11.84 0.00 3.67
351 364 0.103208 CGAGCCTAGATTCGGTTGCT 59.897 55.000 7.67 0.00 33.39 3.91
362 375 0.533308 TCGGTTGCTTGTGGTGGTAC 60.533 55.000 0.00 0.00 0.00 3.34
363 376 1.512156 CGGTTGCTTGTGGTGGTACC 61.512 60.000 4.43 4.43 39.22 3.34
364 377 0.179001 GGTTGCTTGTGGTGGTACCT 60.179 55.000 14.36 0.00 39.58 3.08
365 378 1.235724 GTTGCTTGTGGTGGTACCTC 58.764 55.000 14.36 9.71 39.58 3.85
366 379 0.840617 TTGCTTGTGGTGGTACCTCA 59.159 50.000 14.36 8.89 39.71 3.86
367 380 1.064003 TGCTTGTGGTGGTACCTCAT 58.936 50.000 14.36 0.00 40.91 2.90
371 384 3.861840 CTTGTGGTGGTACCTCATACAG 58.138 50.000 14.36 8.80 40.91 2.74
373 1002 3.244582 TGTGGTGGTACCTCATACAGTT 58.755 45.455 14.36 0.00 36.89 3.16
378 1007 5.544948 TGGTGGTACCTCATACAGTTTACTT 59.455 40.000 14.36 0.00 39.58 2.24
386 1015 5.337330 CCTCATACAGTTTACTTCCTCCGTT 60.337 44.000 0.00 0.00 0.00 4.44
387 1016 5.717119 TCATACAGTTTACTTCCTCCGTTC 58.283 41.667 0.00 0.00 0.00 3.95
388 1017 3.397849 ACAGTTTACTTCCTCCGTTCC 57.602 47.619 0.00 0.00 0.00 3.62
389 1018 2.970640 ACAGTTTACTTCCTCCGTTCCT 59.029 45.455 0.00 0.00 0.00 3.36
399 1028 7.672122 ACTTCCTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
400 1029 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
401 1030 7.343833 ACTTCCTCCGTTCCTAAATATAAGTCA 59.656 37.037 0.00 0.00 0.00 3.41
435 1064 8.084590 CACATATGGATGTATATAGCTGCATG 57.915 38.462 7.80 0.00 44.82 4.06
436 1065 7.713942 CACATATGGATGTATATAGCTGCATGT 59.286 37.037 7.80 0.00 44.82 3.21
437 1066 8.270030 ACATATGGATGTATATAGCTGCATGTT 58.730 33.333 7.80 0.00 44.77 2.71
438 1067 9.768662 CATATGGATGTATATAGCTGCATGTTA 57.231 33.333 1.02 0.00 0.00 2.41
440 1069 8.728337 ATGGATGTATATAGCTGCATGTTAAG 57.272 34.615 1.02 0.00 0.00 1.85
441 1070 7.679783 TGGATGTATATAGCTGCATGTTAAGT 58.320 34.615 1.02 0.00 0.00 2.24
442 1071 8.811994 TGGATGTATATAGCTGCATGTTAAGTA 58.188 33.333 1.02 0.00 0.00 2.24
443 1072 9.823647 GGATGTATATAGCTGCATGTTAAGTAT 57.176 33.333 1.02 0.00 0.00 2.12
453 1082 9.956720 AGCTGCATGTTAAGTATAAATTCATTC 57.043 29.630 1.02 0.00 0.00 2.67
454 1083 9.734620 GCTGCATGTTAAGTATAAATTCATTCA 57.265 29.630 0.00 0.00 0.00 2.57
469 1098 8.761575 AAATTCATTCATTTTGCTTCGTATGT 57.238 26.923 0.00 0.00 0.00 2.29
470 1099 9.853555 AAATTCATTCATTTTGCTTCGTATGTA 57.146 25.926 0.00 0.00 0.00 2.29
471 1100 9.507280 AATTCATTCATTTTGCTTCGTATGTAG 57.493 29.630 0.00 0.00 0.00 2.74
472 1101 7.609760 TCATTCATTTTGCTTCGTATGTAGT 57.390 32.000 0.00 0.00 0.00 2.73
473 1102 7.684670 TCATTCATTTTGCTTCGTATGTAGTC 58.315 34.615 0.00 0.00 0.00 2.59
474 1103 6.417191 TTCATTTTGCTTCGTATGTAGTCC 57.583 37.500 0.00 0.00 0.00 3.85
475 1104 5.483811 TCATTTTGCTTCGTATGTAGTCCA 58.516 37.500 0.00 0.00 0.00 4.02
476 1105 5.350365 TCATTTTGCTTCGTATGTAGTCCAC 59.650 40.000 0.00 0.00 0.00 4.02
477 1106 2.953466 TGCTTCGTATGTAGTCCACC 57.047 50.000 0.00 0.00 0.00 4.61
478 1107 2.453521 TGCTTCGTATGTAGTCCACCT 58.546 47.619 0.00 0.00 0.00 4.00
479 1108 3.623703 TGCTTCGTATGTAGTCCACCTA 58.376 45.455 0.00 0.00 0.00 3.08
480 1109 4.018490 TGCTTCGTATGTAGTCCACCTAA 58.982 43.478 0.00 0.00 0.00 2.69
481 1110 4.647853 TGCTTCGTATGTAGTCCACCTAAT 59.352 41.667 0.00 0.00 0.00 1.73
482 1111 4.982916 GCTTCGTATGTAGTCCACCTAATG 59.017 45.833 0.00 0.00 0.00 1.90
483 1112 5.221185 GCTTCGTATGTAGTCCACCTAATGA 60.221 44.000 0.00 0.00 0.00 2.57
484 1113 6.682113 GCTTCGTATGTAGTCCACCTAATGAA 60.682 42.308 0.00 0.00 0.00 2.57
485 1114 6.778834 TCGTATGTAGTCCACCTAATGAAA 57.221 37.500 0.00 0.00 0.00 2.69
486 1115 7.356089 TCGTATGTAGTCCACCTAATGAAAT 57.644 36.000 0.00 0.00 0.00 2.17
487 1116 7.431249 TCGTATGTAGTCCACCTAATGAAATC 58.569 38.462 0.00 0.00 0.00 2.17
492 1121 5.632034 AGTCCACCTAATGAAATCCCTAC 57.368 43.478 0.00 0.00 0.00 3.18
494 1123 5.491078 AGTCCACCTAATGAAATCCCTACAA 59.509 40.000 0.00 0.00 0.00 2.41
495 1124 6.011981 AGTCCACCTAATGAAATCCCTACAAA 60.012 38.462 0.00 0.00 0.00 2.83
496 1125 6.318900 GTCCACCTAATGAAATCCCTACAAAG 59.681 42.308 0.00 0.00 0.00 2.77
497 1126 6.216662 TCCACCTAATGAAATCCCTACAAAGA 59.783 38.462 0.00 0.00 0.00 2.52
513 1142 9.257651 CCCTACAAAGACTTATATTTAGGAACG 57.742 37.037 0.00 0.00 0.00 3.95
523 1152 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
524 1153 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
526 1155 1.558233 AGGAACGGAGGGAGTAGTTG 58.442 55.000 0.00 0.00 0.00 3.16
527 1156 0.535797 GGAACGGAGGGAGTAGTTGG 59.464 60.000 0.00 0.00 0.00 3.77
528 1157 0.108281 GAACGGAGGGAGTAGTTGGC 60.108 60.000 0.00 0.00 0.00 4.52
529 1158 0.834687 AACGGAGGGAGTAGTTGGCA 60.835 55.000 0.00 0.00 0.00 4.92
530 1159 0.834687 ACGGAGGGAGTAGTTGGCAA 60.835 55.000 0.00 0.00 0.00 4.52
531 1160 0.108138 CGGAGGGAGTAGTTGGCAAG 60.108 60.000 0.00 0.00 0.00 4.01
532 1161 0.393132 GGAGGGAGTAGTTGGCAAGC 60.393 60.000 0.00 0.00 0.00 4.01
533 1162 0.324943 GAGGGAGTAGTTGGCAAGCA 59.675 55.000 0.00 0.00 0.00 3.91
534 1163 0.995024 AGGGAGTAGTTGGCAAGCAT 59.005 50.000 0.00 0.00 0.00 3.79
535 1164 1.065126 AGGGAGTAGTTGGCAAGCATC 60.065 52.381 0.00 0.00 0.00 3.91
536 1165 1.383523 GGAGTAGTTGGCAAGCATCC 58.616 55.000 0.00 2.45 0.00 3.51
537 1166 1.009829 GAGTAGTTGGCAAGCATCCG 58.990 55.000 0.00 0.00 0.00 4.18
538 1167 0.392998 AGTAGTTGGCAAGCATCCGG 60.393 55.000 0.00 0.00 0.00 5.14
539 1168 0.392461 GTAGTTGGCAAGCATCCGGA 60.392 55.000 6.61 6.61 0.00 5.14
540 1169 0.546122 TAGTTGGCAAGCATCCGGAT 59.454 50.000 12.38 12.38 0.00 4.18
541 1170 0.323725 AGTTGGCAAGCATCCGGATT 60.324 50.000 16.19 0.00 0.00 3.01
542 1171 0.532115 GTTGGCAAGCATCCGGATTT 59.468 50.000 16.19 4.62 0.00 2.17
543 1172 1.748493 GTTGGCAAGCATCCGGATTTA 59.252 47.619 16.19 0.00 0.00 1.40
544 1173 2.362077 GTTGGCAAGCATCCGGATTTAT 59.638 45.455 16.19 0.00 0.00 1.40
545 1174 2.665165 TGGCAAGCATCCGGATTTATT 58.335 42.857 16.19 6.98 0.00 1.40
546 1175 3.826524 TGGCAAGCATCCGGATTTATTA 58.173 40.909 16.19 0.00 0.00 0.98
547 1176 3.820467 TGGCAAGCATCCGGATTTATTAG 59.180 43.478 16.19 3.18 0.00 1.73
548 1177 4.072131 GGCAAGCATCCGGATTTATTAGA 58.928 43.478 16.19 0.00 0.00 2.10
549 1178 4.083271 GGCAAGCATCCGGATTTATTAGAC 60.083 45.833 16.19 1.00 0.00 2.59
550 1179 4.083271 GCAAGCATCCGGATTTATTAGACC 60.083 45.833 16.19 0.00 0.00 3.85
551 1180 5.308825 CAAGCATCCGGATTTATTAGACCT 58.691 41.667 16.19 0.00 0.00 3.85
552 1181 5.153950 AGCATCCGGATTTATTAGACCTC 57.846 43.478 16.19 0.00 0.00 3.85
553 1182 4.593206 AGCATCCGGATTTATTAGACCTCA 59.407 41.667 16.19 0.00 0.00 3.86
554 1183 5.249393 AGCATCCGGATTTATTAGACCTCAT 59.751 40.000 16.19 0.00 0.00 2.90
555 1184 6.440647 AGCATCCGGATTTATTAGACCTCATA 59.559 38.462 16.19 0.00 0.00 2.15
556 1185 6.758886 GCATCCGGATTTATTAGACCTCATAG 59.241 42.308 16.19 0.00 0.00 2.23
557 1186 7.579723 GCATCCGGATTTATTAGACCTCATAGT 60.580 40.741 16.19 0.00 0.00 2.12
558 1187 8.967918 CATCCGGATTTATTAGACCTCATAGTA 58.032 37.037 16.19 0.00 0.00 1.82
559 1188 9.716556 ATCCGGATTTATTAGACCTCATAGTAT 57.283 33.333 12.38 0.00 0.00 2.12
560 1189 9.543231 TCCGGATTTATTAGACCTCATAGTATT 57.457 33.333 0.00 0.00 0.00 1.89
570 1199 6.578023 AGACCTCATAGTATTTTGAGTCAGC 58.422 40.000 5.27 0.00 38.12 4.26
571 1200 5.675538 ACCTCATAGTATTTTGAGTCAGCC 58.324 41.667 5.27 0.00 38.12 4.85
572 1201 5.426833 ACCTCATAGTATTTTGAGTCAGCCT 59.573 40.000 5.27 0.00 38.12 4.58
573 1202 6.069963 ACCTCATAGTATTTTGAGTCAGCCTT 60.070 38.462 5.27 0.00 38.12 4.35
574 1203 6.825721 CCTCATAGTATTTTGAGTCAGCCTTT 59.174 38.462 5.27 0.00 38.12 3.11
575 1204 7.201679 CCTCATAGTATTTTGAGTCAGCCTTTG 60.202 40.741 5.27 0.00 38.12 2.77
576 1205 7.394016 TCATAGTATTTTGAGTCAGCCTTTGA 58.606 34.615 0.00 0.00 0.00 2.69
577 1206 8.049117 TCATAGTATTTTGAGTCAGCCTTTGAT 58.951 33.333 0.00 0.00 38.29 2.57
578 1207 8.680903 CATAGTATTTTGAGTCAGCCTTTGATT 58.319 33.333 0.00 0.00 38.29 2.57
579 1208 9.905713 ATAGTATTTTGAGTCAGCCTTTGATTA 57.094 29.630 0.00 0.00 38.29 1.75
580 1209 8.045176 AGTATTTTGAGTCAGCCTTTGATTAC 57.955 34.615 0.00 0.00 38.29 1.89
581 1210 7.885399 AGTATTTTGAGTCAGCCTTTGATTACT 59.115 33.333 0.00 0.00 38.29 2.24
582 1211 6.560253 TTTTGAGTCAGCCTTTGATTACTC 57.440 37.500 0.00 0.00 38.29 2.59
583 1212 4.890158 TGAGTCAGCCTTTGATTACTCA 57.110 40.909 0.00 0.00 38.29 3.41
587 1216 6.988580 TGAGTCAGCCTTTGATTACTCATATG 59.011 38.462 0.00 0.00 38.29 1.78
588 1218 7.129457 AGTCAGCCTTTGATTACTCATATGA 57.871 36.000 5.07 5.07 38.29 2.15
589 1219 6.989169 AGTCAGCCTTTGATTACTCATATGAC 59.011 38.462 0.00 0.00 38.29 3.06
592 1222 8.704668 TCAGCCTTTGATTACTCATATGACTAA 58.295 33.333 0.00 4.39 0.00 2.24
657 1287 6.903883 TTGTATTTGATAGAGCTTTCCGAC 57.096 37.500 0.00 0.00 0.00 4.79
658 1288 5.041287 TGTATTTGATAGAGCTTTCCGACG 58.959 41.667 0.00 0.00 0.00 5.12
659 1289 3.861276 TTTGATAGAGCTTTCCGACGA 57.139 42.857 0.00 0.00 0.00 4.20
660 1290 4.386867 TTTGATAGAGCTTTCCGACGAT 57.613 40.909 0.00 0.00 0.00 3.73
664 1294 6.812879 TGATAGAGCTTTCCGACGATATAA 57.187 37.500 0.00 0.00 0.00 0.98
665 1295 7.392494 TGATAGAGCTTTCCGACGATATAAT 57.608 36.000 0.00 0.00 0.00 1.28
666 1296 7.827701 TGATAGAGCTTTCCGACGATATAATT 58.172 34.615 0.00 0.00 0.00 1.40
667 1297 8.304596 TGATAGAGCTTTCCGACGATATAATTT 58.695 33.333 0.00 0.00 0.00 1.82
668 1298 9.141400 GATAGAGCTTTCCGACGATATAATTTT 57.859 33.333 0.00 0.00 0.00 1.82
669 1299 7.178712 AGAGCTTTCCGACGATATAATTTTG 57.821 36.000 0.00 0.00 0.00 2.44
670 1300 6.984474 AGAGCTTTCCGACGATATAATTTTGA 59.016 34.615 0.00 0.00 0.00 2.69
671 1301 7.169982 AGAGCTTTCCGACGATATAATTTTGAG 59.830 37.037 0.00 0.00 0.00 3.02
672 1302 6.202954 AGCTTTCCGACGATATAATTTTGAGG 59.797 38.462 0.00 0.00 0.00 3.86
673 1303 6.202188 GCTTTCCGACGATATAATTTTGAGGA 59.798 38.462 0.00 0.00 0.00 3.71
674 1304 7.095187 GCTTTCCGACGATATAATTTTGAGGAT 60.095 37.037 0.00 0.00 0.00 3.24
675 1305 9.419297 CTTTCCGACGATATAATTTTGAGGATA 57.581 33.333 0.00 0.00 0.00 2.59
676 1306 9.938280 TTTCCGACGATATAATTTTGAGGATAT 57.062 29.630 0.00 0.00 0.00 1.63
734 1364 9.671279 ATCAAAATTTAGCAAAATAAGAAGGGG 57.329 29.630 0.00 0.00 34.12 4.79
735 1365 8.655901 TCAAAATTTAGCAAAATAAGAAGGGGT 58.344 29.630 0.00 0.00 34.12 4.95
737 1367 6.791867 ATTTAGCAAAATAAGAAGGGGTCC 57.208 37.500 0.00 0.00 33.45 4.46
738 1368 2.723273 AGCAAAATAAGAAGGGGTCCG 58.277 47.619 0.00 0.00 0.00 4.79
742 1372 4.591929 CAAAATAAGAAGGGGTCCGGTAA 58.408 43.478 0.00 0.00 0.00 2.85
743 1373 4.932911 AAATAAGAAGGGGTCCGGTAAA 57.067 40.909 0.00 0.00 0.00 2.01
744 1374 3.920231 ATAAGAAGGGGTCCGGTAAAC 57.080 47.619 0.00 0.00 0.00 2.01
745 1375 0.694771 AAGAAGGGGTCCGGTAAACC 59.305 55.000 0.00 0.74 35.97 3.27
775 1405 6.619744 GGAGGAAGTACCGCTTATAATACTC 58.380 44.000 0.00 0.00 44.74 2.59
776 1406 6.350027 GGAGGAAGTACCGCTTATAATACTCC 60.350 46.154 0.00 0.00 44.74 3.85
782 1412 7.834803 AGTACCGCTTATAATACTCCCATTAC 58.165 38.462 0.00 0.00 0.00 1.89
783 1413 6.675413 ACCGCTTATAATACTCCCATTACA 57.325 37.500 0.00 0.00 0.00 2.41
787 1417 6.574465 CGCTTATAATACTCCCATTACAGGCT 60.574 42.308 0.00 0.00 0.00 4.58
788 1418 6.819146 GCTTATAATACTCCCATTACAGGCTC 59.181 42.308 0.00 0.00 0.00 4.70
791 1434 9.610104 TTATAATACTCCCATTACAGGCTCTAA 57.390 33.333 0.00 0.00 0.00 2.10
798 1441 3.609853 CATTACAGGCTCTAAGGCACAA 58.390 45.455 3.22 0.00 44.19 3.33
827 1470 6.375945 TCAAATACGCTACCGAATACACTA 57.624 37.500 0.00 0.00 38.29 2.74
830 1473 5.756195 ATACGCTACCGAATACACTAACA 57.244 39.130 0.00 0.00 38.29 2.41
831 1474 3.762779 ACGCTACCGAATACACTAACAC 58.237 45.455 0.00 0.00 38.29 3.32
832 1475 2.780014 CGCTACCGAATACACTAACACG 59.220 50.000 0.00 0.00 36.29 4.49
833 1476 2.533129 GCTACCGAATACACTAACACGC 59.467 50.000 0.00 0.00 0.00 5.34
834 1477 1.621107 ACCGAATACACTAACACGCG 58.379 50.000 3.53 3.53 0.00 6.01
835 1478 1.199789 ACCGAATACACTAACACGCGA 59.800 47.619 15.93 0.00 0.00 5.87
836 1479 2.252747 CCGAATACACTAACACGCGAA 58.747 47.619 15.93 0.00 0.00 4.70
837 1480 2.855963 CCGAATACACTAACACGCGAAT 59.144 45.455 15.93 0.00 0.00 3.34
838 1481 3.061403 CCGAATACACTAACACGCGAATC 60.061 47.826 15.93 0.00 0.00 2.52
839 1482 3.544682 CGAATACACTAACACGCGAATCA 59.455 43.478 15.93 0.00 0.00 2.57
840 1483 4.030865 CGAATACACTAACACGCGAATCAA 59.969 41.667 15.93 0.00 0.00 2.57
841 1484 5.276207 CGAATACACTAACACGCGAATCAAT 60.276 40.000 15.93 0.00 0.00 2.57
843 1486 7.358105 CGAATACACTAACACGCGAATCAATAT 60.358 37.037 15.93 0.00 0.00 1.28
844 1487 5.389642 ACACTAACACGCGAATCAATATG 57.610 39.130 15.93 0.00 0.00 1.78
845 1488 4.270084 ACACTAACACGCGAATCAATATGG 59.730 41.667 15.93 0.00 0.00 2.74
847 1490 3.673746 AACACGCGAATCAATATGGTG 57.326 42.857 15.93 0.00 0.00 4.17
848 1491 1.939934 ACACGCGAATCAATATGGTGG 59.060 47.619 15.93 0.00 0.00 4.61
849 1492 1.264020 CACGCGAATCAATATGGTGGG 59.736 52.381 15.93 0.00 0.00 4.61
851 1494 2.224523 ACGCGAATCAATATGGTGGGAT 60.225 45.455 15.93 0.00 0.00 3.85
852 1495 3.007506 ACGCGAATCAATATGGTGGGATA 59.992 43.478 15.93 0.00 0.00 2.59
872 1528 1.757699 ACCTCGATTTCAGCCTACCTC 59.242 52.381 0.00 0.00 0.00 3.85
878 1534 2.698855 TTTCAGCCTACCTCATGCTC 57.301 50.000 0.00 0.00 31.77 4.26
883 1539 2.423446 CTACCTCATGCTCGGCCC 59.577 66.667 0.00 0.00 0.00 5.80
900 1557 1.954382 GCCCCGTGGATATTTTTCCTC 59.046 52.381 0.00 0.00 36.68 3.71
901 1558 2.685522 GCCCCGTGGATATTTTTCCTCA 60.686 50.000 0.00 0.00 36.68 3.86
904 1561 5.570320 CCCCGTGGATATTTTTCCTCATAT 58.430 41.667 0.00 0.00 36.68 1.78
918 1575 3.327757 TCCTCATATGGTGTCCCTATTGC 59.672 47.826 2.13 0.00 0.00 3.56
924 1581 2.865079 TGGTGTCCCTATTGCGAAAAA 58.135 42.857 0.00 0.00 0.00 1.94
936 1593 1.067000 TGCGAAAAATGCCAATGGAGG 60.067 47.619 2.05 0.00 0.00 4.30
984 1641 1.477923 GCAGGGTAGACGAGGAGAGAT 60.478 57.143 0.00 0.00 0.00 2.75
985 1642 2.226330 CAGGGTAGACGAGGAGAGATG 58.774 57.143 0.00 0.00 0.00 2.90
1038 1695 1.888018 CAGCAAGGGCAAGGATGTG 59.112 57.895 0.00 0.00 44.61 3.21
1041 1698 1.318158 GCAAGGGCAAGGATGTGGAG 61.318 60.000 0.00 0.00 40.72 3.86
1128 1785 4.514577 CTCCGCGTCGAGGCCATT 62.515 66.667 23.18 0.00 0.00 3.16
1198 1855 2.965572 GGTACGTACATAGCCAACCA 57.034 50.000 26.02 0.00 0.00 3.67
1199 1856 3.464111 GGTACGTACATAGCCAACCAT 57.536 47.619 26.02 0.00 0.00 3.55
1200 1857 3.387397 GGTACGTACATAGCCAACCATC 58.613 50.000 26.02 1.31 0.00 3.51
1201 1858 2.614829 ACGTACATAGCCAACCATCC 57.385 50.000 0.00 0.00 0.00 3.51
1249 1906 2.750948 TGTAGGAGCGTTGAACTGAAC 58.249 47.619 0.00 0.00 0.00 3.18
1251 1908 1.871080 AGGAGCGTTGAACTGAACAG 58.129 50.000 0.00 0.00 0.00 3.16
1252 1909 1.139058 AGGAGCGTTGAACTGAACAGT 59.861 47.619 1.32 1.32 44.94 3.55
1255 1912 3.120792 GAGCGTTGAACTGAACAGTGTA 58.879 45.455 8.25 0.00 41.58 2.90
1260 1917 7.265673 AGCGTTGAACTGAACAGTGTATATAT 58.734 34.615 8.25 0.00 41.58 0.86
1261 1918 8.410912 AGCGTTGAACTGAACAGTGTATATATA 58.589 33.333 8.25 0.00 41.58 0.86
1439 2107 3.784412 CCGCCCGTGCAAACGTAG 61.784 66.667 0.00 0.00 37.32 3.51
1494 2228 3.971305 TCTTCCTTGTGAGTTGGGACTTA 59.029 43.478 0.00 0.00 35.88 2.24
1495 2229 4.040461 TCTTCCTTGTGAGTTGGGACTTAG 59.960 45.833 0.00 0.00 35.88 2.18
1496 2230 2.637872 TCCTTGTGAGTTGGGACTTAGG 59.362 50.000 0.00 0.00 35.88 2.69
1497 2231 2.637872 CCTTGTGAGTTGGGACTTAGGA 59.362 50.000 0.00 0.00 35.88 2.94
1498 2232 3.307059 CCTTGTGAGTTGGGACTTAGGAG 60.307 52.174 0.00 0.00 35.88 3.69
1499 2233 2.972348 TGTGAGTTGGGACTTAGGAGT 58.028 47.619 0.00 0.00 35.88 3.85
1500 2234 3.314693 TGTGAGTTGGGACTTAGGAGTT 58.685 45.455 0.00 0.00 35.88 3.01
1501 2235 4.485875 TGTGAGTTGGGACTTAGGAGTTA 58.514 43.478 0.00 0.00 35.88 2.24
1518 2252 3.922910 AGTTAGGACTAACAAACGGAGC 58.077 45.455 20.65 0.00 45.79 4.70
1551 2291 3.244946 CCATGTAGGAGGAGATCGAGGTA 60.245 52.174 0.00 0.00 41.22 3.08
1691 2431 2.498078 CCAGTAAACTCTGAGGGTCCTC 59.502 54.545 9.85 9.96 43.01 3.71
1716 2456 4.322681 TGGAAGGGCCACAGTGTA 57.677 55.556 6.18 0.00 43.33 2.90
1717 2457 1.758592 TGGAAGGGCCACAGTGTAC 59.241 57.895 6.18 0.00 43.33 2.90
1745 2506 1.961793 AACGGTTGTCTTTGCTAGCA 58.038 45.000 14.93 14.93 0.00 3.49
1752 2513 5.350365 CGGTTGTCTTTGCTAGCAAACTATA 59.650 40.000 33.58 21.30 40.51 1.31
1754 2515 7.189512 GGTTGTCTTTGCTAGCAAACTATATG 58.810 38.462 33.58 23.70 40.51 1.78
1755 2516 7.148239 GGTTGTCTTTGCTAGCAAACTATATGT 60.148 37.037 33.58 0.00 40.51 2.29
1756 2517 7.921786 TGTCTTTGCTAGCAAACTATATGTT 57.078 32.000 33.58 0.00 40.51 2.71
1757 2518 7.751732 TGTCTTTGCTAGCAAACTATATGTTG 58.248 34.615 33.58 21.83 40.51 3.33
1758 2519 7.606073 TGTCTTTGCTAGCAAACTATATGTTGA 59.394 33.333 33.58 23.45 40.51 3.18
1759 2520 8.616076 GTCTTTGCTAGCAAACTATATGTTGAT 58.384 33.333 33.58 0.00 40.51 2.57
1760 2521 8.615211 TCTTTGCTAGCAAACTATATGTTGATG 58.385 33.333 33.58 20.59 40.51 3.07
1761 2522 8.504812 TTTGCTAGCAAACTATATGTTGATGA 57.495 30.769 33.58 10.59 40.51 2.92
1762 2523 7.719778 TGCTAGCAAACTATATGTTGATGAG 57.280 36.000 16.84 0.00 39.13 2.90
1763 2524 7.500141 TGCTAGCAAACTATATGTTGATGAGA 58.500 34.615 16.84 0.00 39.13 3.27
1764 2525 7.654923 TGCTAGCAAACTATATGTTGATGAGAG 59.345 37.037 16.84 0.00 39.13 3.20
1765 2526 7.869937 GCTAGCAAACTATATGTTGATGAGAGA 59.130 37.037 10.63 0.00 39.13 3.10
1766 2527 9.409312 CTAGCAAACTATATGTTGATGAGAGAG 57.591 37.037 0.00 0.00 39.13 3.20
1767 2528 7.215789 AGCAAACTATATGTTGATGAGAGAGG 58.784 38.462 0.00 0.00 39.13 3.69
1768 2529 6.989169 GCAAACTATATGTTGATGAGAGAGGT 59.011 38.462 0.82 0.00 39.13 3.85
1778 2549 6.667848 TGTTGATGAGAGAGGTTATTCTACCA 59.332 38.462 0.00 0.00 40.82 3.25
1824 2595 1.002366 AATCGCTCGTCATTGCTGTC 58.998 50.000 0.00 0.00 0.00 3.51
1852 2628 6.176975 TCGTGCTAGTGGTTATCAAAATTG 57.823 37.500 0.00 0.00 0.00 2.32
1878 2654 7.644986 TCTCGTTTCAAAATGTTTTGTTTGT 57.355 28.000 15.51 0.00 45.77 2.83
1881 2657 8.481132 TCGTTTCAAAATGTTTTGTTTGTTTG 57.519 26.923 15.51 0.00 45.77 2.93
1885 2661 8.788409 TTCAAAATGTTTTGTTTGTTTGTTCC 57.212 26.923 15.51 0.00 45.77 3.62
1886 2662 8.159344 TCAAAATGTTTTGTTTGTTTGTTCCT 57.841 26.923 15.51 0.00 45.77 3.36
1887 2663 8.072567 TCAAAATGTTTTGTTTGTTTGTTCCTG 58.927 29.630 15.51 0.00 45.77 3.86
1888 2664 4.999751 TGTTTTGTTTGTTTGTTCCTGC 57.000 36.364 0.00 0.00 0.00 4.85
1889 2665 4.380531 TGTTTTGTTTGTTTGTTCCTGCA 58.619 34.783 0.00 0.00 0.00 4.41
1890 2666 4.816385 TGTTTTGTTTGTTTGTTCCTGCAA 59.184 33.333 0.00 0.00 0.00 4.08
1891 2667 5.296780 TGTTTTGTTTGTTTGTTCCTGCAAA 59.703 32.000 0.00 0.00 36.17 3.68
1892 2668 6.183360 TGTTTTGTTTGTTTGTTCCTGCAAAA 60.183 30.769 0.00 0.00 39.65 2.44
1893 2669 6.377327 TTTGTTTGTTTGTTCCTGCAAAAA 57.623 29.167 0.00 0.00 39.65 1.94
2023 2831 6.915843 ACGGTGAAACATTAAGACACATTTTC 59.084 34.615 0.00 0.00 39.98 2.29
2031 2839 3.521524 AAGACACATTTTCGAACGAGC 57.478 42.857 0.00 0.00 0.00 5.03
2072 2881 8.767478 AATGCCTTGAAACAAGATAAATTCTG 57.233 30.769 12.25 0.00 33.93 3.02
2141 2954 1.061905 ATCCATGCTCGGGATTCCCA 61.062 55.000 21.72 7.97 45.83 4.37
2143 2956 0.892358 CCATGCTCGGGATTCCCATG 60.892 60.000 21.72 15.88 45.83 3.66
2144 2957 0.179009 CATGCTCGGGATTCCCATGT 60.179 55.000 21.72 0.00 45.83 3.21
2145 2958 0.179009 ATGCTCGGGATTCCCATGTG 60.179 55.000 21.72 8.21 45.83 3.21
2146 2959 1.224592 GCTCGGGATTCCCATGTGT 59.775 57.895 21.72 0.00 45.83 3.72
2161 3088 7.681939 TCCCATGTGTGTTAGAATAAAAGTC 57.318 36.000 0.00 0.00 0.00 3.01
2187 3114 5.836821 ATATAGTGCATCGGATATCACGT 57.163 39.130 4.83 10.40 34.84 4.49
2188 3115 2.140065 AGTGCATCGGATATCACGTG 57.860 50.000 9.94 9.94 34.84 4.49
2189 3116 0.508641 GTGCATCGGATATCACGTGC 59.491 55.000 11.67 20.45 38.17 5.34
2190 3117 0.103937 TGCATCGGATATCACGTGCA 59.896 50.000 23.04 23.04 41.90 4.57
2192 3119 1.127397 GCATCGGATATCACGTGCATG 59.873 52.381 11.67 3.82 37.86 4.06
2197 3128 2.350522 GGATATCACGTGCATGGATCC 58.649 52.381 11.67 13.30 0.00 3.36
2208 3139 1.746861 GCATGGATCCACCGTTCATGA 60.747 52.381 18.99 0.00 42.61 3.07
2241 3172 6.410540 ACAGTAGAATGCCTTTTTCTCCTAG 58.589 40.000 0.00 0.00 35.19 3.02
2242 3173 6.013293 ACAGTAGAATGCCTTTTTCTCCTAGT 60.013 38.462 0.00 0.00 35.19 2.57
2243 3174 7.180408 ACAGTAGAATGCCTTTTTCTCCTAGTA 59.820 37.037 0.00 0.00 35.19 1.82
2246 3177 6.963322 AGAATGCCTTTTTCTCCTAGTATGT 58.037 36.000 0.00 0.00 0.00 2.29
2255 3194 6.985188 TTTCTCCTAGTATGTTGATGCAAC 57.015 37.500 0.00 3.47 43.78 4.17
2265 3204 7.589395 AGTATGTTGATGCAACGAATACAAAA 58.411 30.769 16.39 0.00 46.13 2.44
2405 3691 1.079543 GTCAGATGGTGAGCAGCGT 60.080 57.895 0.00 0.00 35.13 5.07
2469 3755 8.088365 ACAATTTCTGTAATTAAAAGGAGTGCC 58.912 33.333 0.00 0.00 36.10 5.01
2478 3764 3.982576 AAAAGGAGTGCCGTGTAAAAG 57.017 42.857 0.00 0.00 39.96 2.27
2479 3765 2.922740 AAGGAGTGCCGTGTAAAAGA 57.077 45.000 0.00 0.00 39.96 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.480224 TGATACAGCGGCGTACTTAC 57.520 50.000 9.37 0.00 0.00 2.34
2 3 1.136305 ACATGATACAGCGGCGTACTT 59.864 47.619 9.37 0.00 0.00 2.24
3 4 0.744874 ACATGATACAGCGGCGTACT 59.255 50.000 9.37 0.00 0.00 2.73
4 5 1.129326 GACATGATACAGCGGCGTAC 58.871 55.000 9.37 0.00 0.00 3.67
5 6 0.741915 TGACATGATACAGCGGCGTA 59.258 50.000 9.37 7.03 0.00 4.42
6 7 0.108377 TTGACATGATACAGCGGCGT 60.108 50.000 9.37 0.00 0.00 5.68
7 8 1.006086 TTTGACATGATACAGCGGCG 58.994 50.000 0.51 0.51 0.00 6.46
8 9 2.287188 CCATTTGACATGATACAGCGGC 60.287 50.000 0.00 0.00 0.00 6.53
9 10 2.291465 CCCATTTGACATGATACAGCGG 59.709 50.000 0.00 0.00 0.00 5.52
10 11 3.205338 TCCCATTTGACATGATACAGCG 58.795 45.455 0.00 0.00 0.00 5.18
11 12 5.581126 TTTCCCATTTGACATGATACAGC 57.419 39.130 0.00 0.00 0.00 4.40
12 13 7.829725 TCTTTTTCCCATTTGACATGATACAG 58.170 34.615 0.00 0.00 0.00 2.74
13 14 7.773489 TCTTTTTCCCATTTGACATGATACA 57.227 32.000 0.00 0.00 0.00 2.29
14 15 8.253113 ACATCTTTTTCCCATTTGACATGATAC 58.747 33.333 0.00 0.00 0.00 2.24
28 29 1.886542 AGGCGTCAACATCTTTTTCCC 59.113 47.619 0.00 0.00 0.00 3.97
30 31 2.552315 TCCAGGCGTCAACATCTTTTTC 59.448 45.455 0.00 0.00 0.00 2.29
35 36 1.523758 GTTTCCAGGCGTCAACATCT 58.476 50.000 0.00 0.00 0.00 2.90
36 37 0.521735 GGTTTCCAGGCGTCAACATC 59.478 55.000 0.00 0.00 0.00 3.06
37 38 0.110486 AGGTTTCCAGGCGTCAACAT 59.890 50.000 0.00 0.00 0.00 2.71
55 62 4.999950 AGATGGCAGTGTGAAAAACTAGAG 59.000 41.667 0.00 0.00 25.60 2.43
58 65 5.472137 GGTTAGATGGCAGTGTGAAAAACTA 59.528 40.000 0.00 0.00 25.60 2.24
86 93 1.528248 CTGCACGAACAAAAACGCGG 61.528 55.000 12.47 0.00 0.00 6.46
104 111 3.835395 ACTCCAAGAGGTTTTCGATCTCT 59.165 43.478 0.00 0.00 39.31 3.10
115 122 2.286523 CGCCCAGACTCCAAGAGGT 61.287 63.158 0.00 0.00 33.35 3.85
116 123 1.954362 CTCGCCCAGACTCCAAGAGG 61.954 65.000 0.00 0.00 33.35 3.69
118 125 2.650116 GCTCGCCCAGACTCCAAGA 61.650 63.158 0.00 0.00 0.00 3.02
119 126 2.125350 GCTCGCCCAGACTCCAAG 60.125 66.667 0.00 0.00 0.00 3.61
120 127 0.902984 TAAGCTCGCCCAGACTCCAA 60.903 55.000 0.00 0.00 0.00 3.53
121 128 0.902984 TTAAGCTCGCCCAGACTCCA 60.903 55.000 0.00 0.00 0.00 3.86
122 129 0.466124 ATTAAGCTCGCCCAGACTCC 59.534 55.000 0.00 0.00 0.00 3.85
123 130 1.137086 TGATTAAGCTCGCCCAGACTC 59.863 52.381 0.00 0.00 0.00 3.36
124 131 1.195115 TGATTAAGCTCGCCCAGACT 58.805 50.000 0.00 0.00 0.00 3.24
125 132 2.024176 TTGATTAAGCTCGCCCAGAC 57.976 50.000 0.00 0.00 0.00 3.51
146 153 5.123820 CCAGCGGACTCTTTTTAATCATTGA 59.876 40.000 0.00 0.00 0.00 2.57
147 154 5.335127 CCAGCGGACTCTTTTTAATCATTG 58.665 41.667 0.00 0.00 0.00 2.82
193 206 3.761752 GGCTGGCCACTAGTTCAATTAAA 59.238 43.478 0.00 0.00 35.81 1.52
240 253 1.047034 GGTACCCTGACTGGCGGTAT 61.047 60.000 0.00 0.00 34.73 2.73
242 255 3.001406 GGTACCCTGACTGGCGGT 61.001 66.667 0.00 0.00 0.00 5.68
262 275 3.101796 TAGCATGGCAGCCCGGTAC 62.102 63.158 9.64 0.00 34.23 3.34
263 276 2.766229 TAGCATGGCAGCCCGGTA 60.766 61.111 9.64 7.40 34.23 4.02
264 277 4.489771 GTAGCATGGCAGCCCGGT 62.490 66.667 9.64 8.50 34.23 5.28
265 278 2.116983 ATAGTAGCATGGCAGCCCGG 62.117 60.000 9.64 1.39 34.23 5.73
266 279 0.952497 CATAGTAGCATGGCAGCCCG 60.952 60.000 9.64 0.43 34.23 6.13
290 303 2.743538 TCACTGTCGCTGCATGCC 60.744 61.111 16.68 0.00 38.78 4.40
305 318 4.687215 GCACACCGGCAGAGCTCA 62.687 66.667 17.77 0.00 0.00 4.26
327 340 3.571741 CGAATCTAGGCTCGGAACC 57.428 57.895 0.00 0.00 0.00 3.62
351 364 3.244582 ACTGTATGAGGTACCACCACAA 58.755 45.455 15.94 1.26 42.00 3.33
362 375 4.159879 ACGGAGGAAGTAAACTGTATGAGG 59.840 45.833 0.00 0.00 0.00 3.86
363 376 5.326200 ACGGAGGAAGTAAACTGTATGAG 57.674 43.478 0.00 0.00 0.00 2.90
364 377 5.337009 GGAACGGAGGAAGTAAACTGTATGA 60.337 44.000 0.00 0.00 0.00 2.15
365 378 4.868734 GGAACGGAGGAAGTAAACTGTATG 59.131 45.833 0.00 0.00 0.00 2.39
366 379 4.776308 AGGAACGGAGGAAGTAAACTGTAT 59.224 41.667 0.00 0.00 0.00 2.29
367 380 4.154942 AGGAACGGAGGAAGTAAACTGTA 58.845 43.478 0.00 0.00 0.00 2.74
371 384 9.822185 TTATATTTAGGAACGGAGGAAGTAAAC 57.178 33.333 0.00 0.00 0.00 2.01
373 1002 9.205513 ACTTATATTTAGGAACGGAGGAAGTAA 57.794 33.333 0.00 0.00 0.00 2.24
378 1007 7.664552 TTGACTTATATTTAGGAACGGAGGA 57.335 36.000 0.00 0.00 0.00 3.71
406 1035 7.225538 GCAGCTATATACATCCATATGTGGTTC 59.774 40.741 8.51 0.00 45.99 3.62
407 1036 7.050377 GCAGCTATATACATCCATATGTGGTT 58.950 38.462 8.51 0.00 45.99 3.67
409 1038 6.585416 TGCAGCTATATACATCCATATGTGG 58.415 40.000 1.19 1.19 45.99 4.17
412 1041 8.672823 AACATGCAGCTATATACATCCATATG 57.327 34.615 0.00 0.00 39.17 1.78
414 1043 9.822185 CTTAACATGCAGCTATATACATCCATA 57.178 33.333 0.00 0.00 0.00 2.74
415 1044 8.324306 ACTTAACATGCAGCTATATACATCCAT 58.676 33.333 0.00 0.00 0.00 3.41
417 1046 9.823647 ATACTTAACATGCAGCTATATACATCC 57.176 33.333 0.00 0.00 0.00 3.51
427 1056 9.956720 GAATGAATTTATACTTAACATGCAGCT 57.043 29.630 0.00 0.00 0.00 4.24
428 1057 9.734620 TGAATGAATTTATACTTAACATGCAGC 57.265 29.630 0.00 0.00 0.00 5.25
443 1072 9.853555 ACATACGAAGCAAAATGAATGAATTTA 57.146 25.926 0.00 0.00 0.00 1.40
444 1073 8.761575 ACATACGAAGCAAAATGAATGAATTT 57.238 26.923 0.00 0.00 0.00 1.82
445 1074 9.507280 CTACATACGAAGCAAAATGAATGAATT 57.493 29.630 0.00 0.00 0.00 2.17
446 1075 8.677300 ACTACATACGAAGCAAAATGAATGAAT 58.323 29.630 0.00 0.00 0.00 2.57
447 1076 8.039603 ACTACATACGAAGCAAAATGAATGAA 57.960 30.769 0.00 0.00 0.00 2.57
448 1077 7.201609 GGACTACATACGAAGCAAAATGAATGA 60.202 37.037 0.00 0.00 0.00 2.57
449 1078 6.907212 GGACTACATACGAAGCAAAATGAATG 59.093 38.462 0.00 0.00 0.00 2.67
450 1079 6.597672 TGGACTACATACGAAGCAAAATGAAT 59.402 34.615 0.00 0.00 0.00 2.57
451 1080 5.935206 TGGACTACATACGAAGCAAAATGAA 59.065 36.000 0.00 0.00 0.00 2.57
452 1081 5.350365 GTGGACTACATACGAAGCAAAATGA 59.650 40.000 0.00 0.00 0.00 2.57
453 1082 5.447279 GGTGGACTACATACGAAGCAAAATG 60.447 44.000 0.00 0.00 0.00 2.32
454 1083 4.634443 GGTGGACTACATACGAAGCAAAAT 59.366 41.667 0.00 0.00 0.00 1.82
455 1084 3.998341 GGTGGACTACATACGAAGCAAAA 59.002 43.478 0.00 0.00 0.00 2.44
456 1085 3.259876 AGGTGGACTACATACGAAGCAAA 59.740 43.478 0.00 0.00 0.00 3.68
457 1086 2.829720 AGGTGGACTACATACGAAGCAA 59.170 45.455 0.00 0.00 0.00 3.91
458 1087 2.453521 AGGTGGACTACATACGAAGCA 58.546 47.619 0.00 0.00 0.00 3.91
459 1088 4.644103 TTAGGTGGACTACATACGAAGC 57.356 45.455 0.00 0.00 0.00 3.86
460 1089 6.387041 TCATTAGGTGGACTACATACGAAG 57.613 41.667 0.00 0.00 0.00 3.79
461 1090 6.778834 TTCATTAGGTGGACTACATACGAA 57.221 37.500 0.00 0.00 0.00 3.85
462 1091 6.778834 TTTCATTAGGTGGACTACATACGA 57.221 37.500 0.00 0.00 0.00 3.43
463 1092 6.645415 GGATTTCATTAGGTGGACTACATACG 59.355 42.308 0.00 0.00 0.00 3.06
464 1093 6.935208 GGGATTTCATTAGGTGGACTACATAC 59.065 42.308 0.00 0.00 0.00 2.39
465 1094 6.849697 AGGGATTTCATTAGGTGGACTACATA 59.150 38.462 0.00 0.00 0.00 2.29
466 1095 5.672194 AGGGATTTCATTAGGTGGACTACAT 59.328 40.000 0.00 0.00 0.00 2.29
467 1096 5.036916 AGGGATTTCATTAGGTGGACTACA 58.963 41.667 0.00 0.00 0.00 2.74
468 1097 5.632034 AGGGATTTCATTAGGTGGACTAC 57.368 43.478 0.00 0.00 0.00 2.73
469 1098 6.206787 TGTAGGGATTTCATTAGGTGGACTA 58.793 40.000 0.00 0.00 0.00 2.59
470 1099 5.036916 TGTAGGGATTTCATTAGGTGGACT 58.963 41.667 0.00 0.00 0.00 3.85
471 1100 5.367945 TGTAGGGATTTCATTAGGTGGAC 57.632 43.478 0.00 0.00 0.00 4.02
472 1101 6.216662 TCTTTGTAGGGATTTCATTAGGTGGA 59.783 38.462 0.00 0.00 0.00 4.02
473 1102 6.318900 GTCTTTGTAGGGATTTCATTAGGTGG 59.681 42.308 0.00 0.00 0.00 4.61
474 1103 7.112779 AGTCTTTGTAGGGATTTCATTAGGTG 58.887 38.462 0.00 0.00 0.00 4.00
475 1104 7.272144 AGTCTTTGTAGGGATTTCATTAGGT 57.728 36.000 0.00 0.00 0.00 3.08
476 1105 9.853177 ATAAGTCTTTGTAGGGATTTCATTAGG 57.147 33.333 0.00 0.00 0.00 2.69
487 1116 9.257651 CGTTCCTAAATATAAGTCTTTGTAGGG 57.742 37.037 0.00 0.00 0.00 3.53
492 1121 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
494 1123 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
495 1124 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
496 1125 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
497 1126 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
507 1136 1.558233 CAACTACTCCCTCCGTTCCT 58.442 55.000 0.00 0.00 0.00 3.36
508 1137 0.535797 CCAACTACTCCCTCCGTTCC 59.464 60.000 0.00 0.00 0.00 3.62
509 1138 0.108281 GCCAACTACTCCCTCCGTTC 60.108 60.000 0.00 0.00 0.00 3.95
510 1139 0.834687 TGCCAACTACTCCCTCCGTT 60.835 55.000 0.00 0.00 0.00 4.44
512 1141 0.108138 CTTGCCAACTACTCCCTCCG 60.108 60.000 0.00 0.00 0.00 4.63
513 1142 0.393132 GCTTGCCAACTACTCCCTCC 60.393 60.000 0.00 0.00 0.00 4.30
523 1152 0.532115 AAATCCGGATGCTTGCCAAC 59.468 50.000 19.95 0.00 0.00 3.77
524 1153 2.136298 TAAATCCGGATGCTTGCCAA 57.864 45.000 19.95 0.00 0.00 4.52
526 1155 4.072131 TCTAATAAATCCGGATGCTTGCC 58.928 43.478 19.95 0.00 0.00 4.52
527 1156 4.083271 GGTCTAATAAATCCGGATGCTTGC 60.083 45.833 19.95 3.99 0.00 4.01
528 1157 5.308825 AGGTCTAATAAATCCGGATGCTTG 58.691 41.667 19.95 6.88 0.00 4.01
529 1158 5.071788 TGAGGTCTAATAAATCCGGATGCTT 59.928 40.000 19.95 12.31 0.00 3.91
530 1159 4.593206 TGAGGTCTAATAAATCCGGATGCT 59.407 41.667 19.95 11.19 0.00 3.79
531 1160 4.894784 TGAGGTCTAATAAATCCGGATGC 58.105 43.478 19.95 0.78 0.00 3.91
532 1161 7.841956 ACTATGAGGTCTAATAAATCCGGATG 58.158 38.462 19.95 4.05 0.00 3.51
533 1162 9.716556 ATACTATGAGGTCTAATAAATCCGGAT 57.283 33.333 12.38 12.38 0.00 4.18
534 1163 9.543231 AATACTATGAGGTCTAATAAATCCGGA 57.457 33.333 6.61 6.61 0.00 5.14
544 1173 8.198109 GCTGACTCAAAATACTATGAGGTCTAA 58.802 37.037 7.59 0.00 45.80 2.10
545 1174 7.201920 GGCTGACTCAAAATACTATGAGGTCTA 60.202 40.741 7.59 0.00 45.80 2.59
546 1175 6.407525 GGCTGACTCAAAATACTATGAGGTCT 60.408 42.308 7.59 0.00 45.80 3.85
547 1176 5.755861 GGCTGACTCAAAATACTATGAGGTC 59.244 44.000 7.59 3.94 45.80 3.85
548 1177 5.426833 AGGCTGACTCAAAATACTATGAGGT 59.573 40.000 7.59 0.00 45.80 3.85
549 1178 5.923204 AGGCTGACTCAAAATACTATGAGG 58.077 41.667 7.59 0.00 45.80 3.86
550 1179 7.550551 TCAAAGGCTGACTCAAAATACTATGAG 59.449 37.037 1.46 1.46 46.69 2.90
551 1180 7.394016 TCAAAGGCTGACTCAAAATACTATGA 58.606 34.615 0.00 0.00 0.00 2.15
552 1181 7.615582 TCAAAGGCTGACTCAAAATACTATG 57.384 36.000 0.00 0.00 0.00 2.23
553 1182 8.814038 AATCAAAGGCTGACTCAAAATACTAT 57.186 30.769 0.00 0.00 36.69 2.12
554 1183 9.162764 GTAATCAAAGGCTGACTCAAAATACTA 57.837 33.333 0.00 0.00 36.69 1.82
555 1184 7.885399 AGTAATCAAAGGCTGACTCAAAATACT 59.115 33.333 0.00 0.00 36.69 2.12
556 1185 8.045176 AGTAATCAAAGGCTGACTCAAAATAC 57.955 34.615 0.00 0.00 36.69 1.89
557 1186 7.882791 TGAGTAATCAAAGGCTGACTCAAAATA 59.117 33.333 0.23 0.00 36.69 1.40
558 1187 6.716628 TGAGTAATCAAAGGCTGACTCAAAAT 59.283 34.615 0.23 0.00 36.69 1.82
559 1188 6.061441 TGAGTAATCAAAGGCTGACTCAAAA 58.939 36.000 0.23 0.00 36.69 2.44
560 1189 5.620206 TGAGTAATCAAAGGCTGACTCAAA 58.380 37.500 0.23 0.00 36.69 2.69
561 1190 5.227569 TGAGTAATCAAAGGCTGACTCAA 57.772 39.130 0.23 0.00 36.69 3.02
562 1191 4.890158 TGAGTAATCAAAGGCTGACTCA 57.110 40.909 0.00 0.00 36.69 3.41
563 1192 7.170658 GTCATATGAGTAATCAAAGGCTGACTC 59.829 40.741 5.42 0.00 36.69 3.36
564 1193 6.989169 GTCATATGAGTAATCAAAGGCTGACT 59.011 38.462 5.42 0.00 36.69 3.41
565 1194 6.989169 AGTCATATGAGTAATCAAAGGCTGAC 59.011 38.462 11.48 6.43 36.69 3.51
566 1195 7.129457 AGTCATATGAGTAATCAAAGGCTGA 57.871 36.000 11.48 0.00 38.81 4.26
567 1196 8.893219 TTAGTCATATGAGTAATCAAAGGCTG 57.107 34.615 23.39 0.00 35.63 4.85
631 1261 8.064814 GTCGGAAAGCTCTATCAAATACAAATC 58.935 37.037 0.00 0.00 0.00 2.17
632 1262 7.254455 CGTCGGAAAGCTCTATCAAATACAAAT 60.254 37.037 0.00 0.00 0.00 2.32
633 1263 6.035650 CGTCGGAAAGCTCTATCAAATACAAA 59.964 38.462 0.00 0.00 0.00 2.83
636 1266 5.279384 TCGTCGGAAAGCTCTATCAAATAC 58.721 41.667 0.00 0.00 0.00 1.89
637 1267 5.509716 TCGTCGGAAAGCTCTATCAAATA 57.490 39.130 0.00 0.00 0.00 1.40
640 1270 5.707242 ATATCGTCGGAAAGCTCTATCAA 57.293 39.130 0.00 0.00 0.00 2.57
646 1276 7.173863 TCAAAATTATATCGTCGGAAAGCTC 57.826 36.000 0.00 0.00 0.00 4.09
649 1279 7.709269 TCCTCAAAATTATATCGTCGGAAAG 57.291 36.000 0.00 0.00 0.00 2.62
650 1280 9.938280 ATATCCTCAAAATTATATCGTCGGAAA 57.062 29.630 0.00 0.00 0.00 3.13
708 1338 9.671279 CCCCTTCTTATTTTGCTAAATTTTGAT 57.329 29.630 11.32 0.00 35.61 2.57
709 1339 8.655901 ACCCCTTCTTATTTTGCTAAATTTTGA 58.344 29.630 11.32 5.42 35.61 2.69
717 1347 3.371166 CCGGACCCCTTCTTATTTTGCTA 60.371 47.826 0.00 0.00 0.00 3.49
719 1349 1.749063 CCGGACCCCTTCTTATTTTGC 59.251 52.381 0.00 0.00 0.00 3.68
720 1350 3.081710 ACCGGACCCCTTCTTATTTTG 57.918 47.619 9.46 0.00 0.00 2.44
723 1353 3.054139 GGTTTACCGGACCCCTTCTTATT 60.054 47.826 9.46 0.00 0.00 1.40
727 1357 2.380365 GGTTTACCGGACCCCTTCT 58.620 57.895 9.46 0.00 0.00 2.85
745 1375 2.768492 CGGTACTTCCTCCGTCCCG 61.768 68.421 0.00 0.00 41.58 5.14
746 1376 3.204418 CGGTACTTCCTCCGTCCC 58.796 66.667 0.00 0.00 41.58 4.46
751 1381 6.350027 GGAGTATTATAAGCGGTACTTCCTCC 60.350 46.154 0.00 0.00 39.97 4.30
752 1382 6.350027 GGGAGTATTATAAGCGGTACTTCCTC 60.350 46.154 11.73 0.00 39.00 3.71
753 1383 5.479724 GGGAGTATTATAAGCGGTACTTCCT 59.520 44.000 11.73 0.00 39.00 3.36
754 1384 5.244626 TGGGAGTATTATAAGCGGTACTTCC 59.755 44.000 11.98 11.98 41.35 3.46
755 1385 6.336842 TGGGAGTATTATAAGCGGTACTTC 57.663 41.667 0.00 0.00 39.97 3.01
756 1386 6.930068 ATGGGAGTATTATAAGCGGTACTT 57.070 37.500 0.00 0.00 42.76 2.24
757 1387 6.930068 AATGGGAGTATTATAAGCGGTACT 57.070 37.500 0.00 0.00 0.00 2.73
758 1388 7.605449 TGTAATGGGAGTATTATAAGCGGTAC 58.395 38.462 0.00 0.00 0.00 3.34
760 1390 6.295688 CCTGTAATGGGAGTATTATAAGCGGT 60.296 42.308 0.00 0.00 0.00 5.68
764 1394 8.140112 AGAGCCTGTAATGGGAGTATTATAAG 57.860 38.462 0.00 0.00 0.00 1.73
765 1395 9.610104 TTAGAGCCTGTAATGGGAGTATTATAA 57.390 33.333 0.00 0.00 0.00 0.98
769 1399 5.308237 CCTTAGAGCCTGTAATGGGAGTATT 59.692 44.000 0.00 0.00 0.00 1.89
775 1405 1.490490 TGCCTTAGAGCCTGTAATGGG 59.510 52.381 0.00 0.00 0.00 4.00
776 1406 2.092968 TGTGCCTTAGAGCCTGTAATGG 60.093 50.000 0.00 0.00 0.00 3.16
815 1458 1.199789 TCGCGTGTTAGTGTATTCGGT 59.800 47.619 5.77 0.00 0.00 4.69
818 1461 5.444586 TTGATTCGCGTGTTAGTGTATTC 57.555 39.130 5.77 0.00 0.00 1.75
827 1470 2.354510 CCACCATATTGATTCGCGTGTT 59.645 45.455 5.77 0.00 0.00 3.32
830 1473 1.140052 TCCCACCATATTGATTCGCGT 59.860 47.619 5.77 0.00 0.00 6.01
831 1474 1.877637 TCCCACCATATTGATTCGCG 58.122 50.000 0.00 0.00 0.00 5.87
832 1475 4.946784 GTATCCCACCATATTGATTCGC 57.053 45.455 0.00 0.00 0.00 4.70
845 1488 2.484889 GCTGAAATCGAGGTATCCCAC 58.515 52.381 0.00 0.00 0.00 4.61
847 1490 1.694696 AGGCTGAAATCGAGGTATCCC 59.305 52.381 0.00 0.00 0.00 3.85
848 1491 3.306156 GGTAGGCTGAAATCGAGGTATCC 60.306 52.174 0.00 0.00 0.00 2.59
849 1492 3.574826 AGGTAGGCTGAAATCGAGGTATC 59.425 47.826 0.00 0.00 0.00 2.24
851 1494 2.957006 GAGGTAGGCTGAAATCGAGGTA 59.043 50.000 0.00 0.00 0.00 3.08
852 1495 1.757699 GAGGTAGGCTGAAATCGAGGT 59.242 52.381 0.00 0.00 0.00 3.85
878 1534 0.666374 GAAAAATATCCACGGGGCCG 59.334 55.000 0.00 0.00 46.03 6.13
883 1539 6.003950 ACCATATGAGGAAAAATATCCACGG 58.996 40.000 3.65 0.00 42.27 4.94
885 1541 7.040409 GGACACCATATGAGGAAAAATATCCAC 60.040 40.741 3.65 0.00 42.27 4.02
886 1542 7.004086 GGACACCATATGAGGAAAAATATCCA 58.996 38.462 3.65 0.00 42.27 3.41
887 1543 6.434340 GGGACACCATATGAGGAAAAATATCC 59.566 42.308 3.65 0.00 36.86 2.59
888 1544 7.234355 AGGGACACCATATGAGGAAAAATATC 58.766 38.462 3.65 0.00 40.13 1.63
889 1545 7.166758 AGGGACACCATATGAGGAAAAATAT 57.833 36.000 3.65 0.00 40.13 1.28
890 1546 6.590656 AGGGACACCATATGAGGAAAAATA 57.409 37.500 3.65 0.00 40.13 1.40
900 1557 3.401033 TCGCAATAGGGACACCATATG 57.599 47.619 0.00 0.00 40.13 1.78
901 1558 4.431416 TTTCGCAATAGGGACACCATAT 57.569 40.909 0.00 0.00 40.13 1.78
904 1561 2.570415 TTTTCGCAATAGGGACACCA 57.430 45.000 0.00 0.00 40.13 4.17
936 1593 2.821810 GGCCTTTGAGAGCTCGGC 60.822 66.667 18.28 18.28 39.98 5.54
943 1600 6.296087 CCTGCATATATAAGAGGCCTTTGAGA 60.296 42.308 6.77 0.00 33.94 3.27
984 1641 1.335882 CCATCTGCAGGCTCTCTCCA 61.336 60.000 15.13 0.00 0.00 3.86
985 1642 1.446791 CCATCTGCAGGCTCTCTCC 59.553 63.158 15.13 0.00 0.00 3.71
1005 1662 2.743928 CTGCCGCCTTCGAGCTTT 60.744 61.111 0.00 0.00 38.10 3.51
1026 1683 0.394899 CTTCCTCCACATCCTTGCCC 60.395 60.000 0.00 0.00 0.00 5.36
1027 1684 1.034292 GCTTCCTCCACATCCTTGCC 61.034 60.000 0.00 0.00 0.00 4.52
1028 1685 1.034292 GGCTTCCTCCACATCCTTGC 61.034 60.000 0.00 0.00 0.00 4.01
1029 1686 0.329261 TGGCTTCCTCCACATCCTTG 59.671 55.000 0.00 0.00 0.00 3.61
1030 1687 1.064166 CATGGCTTCCTCCACATCCTT 60.064 52.381 0.00 0.00 39.25 3.36
1031 1688 0.549950 CATGGCTTCCTCCACATCCT 59.450 55.000 0.00 0.00 39.25 3.24
1038 1695 0.985490 ACCTCTCCATGGCTTCCTCC 60.985 60.000 6.96 0.00 0.00 4.30
1041 1698 1.225704 CCACCTCTCCATGGCTTCC 59.774 63.158 6.96 0.00 0.00 3.46
1187 1844 1.898574 GCCGGGATGGTTGGCTATG 60.899 63.158 2.18 0.00 45.40 2.23
1188 1845 2.515901 GCCGGGATGGTTGGCTAT 59.484 61.111 2.18 0.00 45.40 2.97
1217 1874 4.128643 ACGCTCCTACATACAGTACTCTC 58.871 47.826 0.00 0.00 0.00 3.20
1218 1875 4.153673 ACGCTCCTACATACAGTACTCT 57.846 45.455 0.00 0.00 0.00 3.24
1249 1906 6.420903 GTGCACACACAGGTATATATACACTG 59.579 42.308 24.83 24.83 46.61 3.66
1251 1908 6.764877 GTGCACACACAGGTATATATACAC 57.235 41.667 21.56 12.42 46.61 2.90
1439 2107 4.699257 ACGGGAAGACATATACTCGTATCC 59.301 45.833 0.00 0.00 0.00 2.59
1471 2205 2.104963 AGTCCCAACTCACAAGGAAGAC 59.895 50.000 0.00 0.00 0.00 3.01
1494 2228 4.154942 TCCGTTTGTTAGTCCTAACTCCT 58.845 43.478 15.96 0.00 44.21 3.69
1495 2229 4.492611 CTCCGTTTGTTAGTCCTAACTCC 58.507 47.826 15.96 5.46 44.21 3.85
1496 2230 3.925299 GCTCCGTTTGTTAGTCCTAACTC 59.075 47.826 15.96 7.67 44.21 3.01
1497 2231 3.306571 GGCTCCGTTTGTTAGTCCTAACT 60.307 47.826 15.96 0.00 44.21 2.24
1498 2232 2.998670 GGCTCCGTTTGTTAGTCCTAAC 59.001 50.000 9.72 9.72 44.16 2.34
1499 2233 2.633967 TGGCTCCGTTTGTTAGTCCTAA 59.366 45.455 0.00 0.00 0.00 2.69
1500 2234 2.250031 TGGCTCCGTTTGTTAGTCCTA 58.750 47.619 0.00 0.00 0.00 2.94
1501 2235 1.053424 TGGCTCCGTTTGTTAGTCCT 58.947 50.000 0.00 0.00 0.00 3.85
1518 2252 1.202842 TCCTACATGGATGCAGCATGG 60.203 52.381 14.22 5.94 40.56 3.66
1716 2456 2.215196 AGACAACCGTTTTATGCGTGT 58.785 42.857 0.00 0.00 0.00 4.49
1717 2457 2.961522 AGACAACCGTTTTATGCGTG 57.038 45.000 0.00 0.00 0.00 5.34
1752 2513 7.345653 TGGTAGAATAACCTCTCTCATCAACAT 59.654 37.037 0.00 0.00 40.44 2.71
1754 2515 7.113658 TGGTAGAATAACCTCTCTCATCAAC 57.886 40.000 0.00 0.00 40.44 3.18
1755 2516 7.633772 GCTTGGTAGAATAACCTCTCTCATCAA 60.634 40.741 0.00 0.00 40.44 2.57
1756 2517 6.183360 GCTTGGTAGAATAACCTCTCTCATCA 60.183 42.308 0.00 0.00 40.44 3.07
1757 2518 6.183360 TGCTTGGTAGAATAACCTCTCTCATC 60.183 42.308 0.00 0.00 40.44 2.92
1758 2519 5.663106 TGCTTGGTAGAATAACCTCTCTCAT 59.337 40.000 0.00 0.00 40.44 2.90
1759 2520 5.023452 TGCTTGGTAGAATAACCTCTCTCA 58.977 41.667 0.00 0.00 40.44 3.27
1760 2521 5.353111 GTGCTTGGTAGAATAACCTCTCTC 58.647 45.833 0.00 0.00 40.44 3.20
1761 2522 4.142138 CGTGCTTGGTAGAATAACCTCTCT 60.142 45.833 0.00 0.00 40.44 3.10
1762 2523 4.113354 CGTGCTTGGTAGAATAACCTCTC 58.887 47.826 0.00 0.00 40.44 3.20
1763 2524 3.118738 CCGTGCTTGGTAGAATAACCTCT 60.119 47.826 0.00 0.00 40.44 3.69
1764 2525 3.195661 CCGTGCTTGGTAGAATAACCTC 58.804 50.000 0.00 0.00 40.44 3.85
1765 2526 2.093128 CCCGTGCTTGGTAGAATAACCT 60.093 50.000 0.00 0.00 40.44 3.50
1766 2527 2.093341 TCCCGTGCTTGGTAGAATAACC 60.093 50.000 0.00 0.00 40.19 2.85
1767 2528 3.255969 TCCCGTGCTTGGTAGAATAAC 57.744 47.619 0.00 0.00 0.00 1.89
1768 2529 5.818678 ATATCCCGTGCTTGGTAGAATAA 57.181 39.130 0.00 0.00 0.00 1.40
1805 2576 1.002366 GACAGCAATGACGAGCGATT 58.998 50.000 0.00 0.00 35.48 3.34
1824 2595 7.477144 TTTGATAACCACTAGCACGAATATG 57.523 36.000 0.00 0.00 0.00 1.78
1996 2804 3.562141 TGTGTCTTAATGTTTCACCGTGG 59.438 43.478 0.00 0.00 0.00 4.94
2039 2848 5.304101 TCTTGTTTCAAGGCATTACATTGGT 59.696 36.000 9.18 0.00 0.00 3.67
2049 2858 7.523293 TCAGAATTTATCTTGTTTCAAGGCA 57.477 32.000 9.18 0.00 35.73 4.75
2106 2919 4.201950 GCATGGATTCACTGTATGTGGTTC 60.202 45.833 0.00 0.00 46.20 3.62
2161 3088 7.862873 ACGTGATATCCGATGCACTATATAATG 59.137 37.037 17.05 0.00 0.00 1.90
2168 3095 2.607038 GCACGTGATATCCGATGCACTA 60.607 50.000 22.23 0.00 34.66 2.74
2177 3104 2.289631 TGGATCCATGCACGTGATATCC 60.290 50.000 22.23 20.48 34.58 2.59
2187 3114 0.255604 ATGAACGGTGGATCCATGCA 59.744 50.000 19.62 7.42 35.57 3.96
2188 3115 0.664761 CATGAACGGTGGATCCATGC 59.335 55.000 19.62 5.67 35.57 4.06
2189 3116 2.330440 TCATGAACGGTGGATCCATG 57.670 50.000 19.62 16.14 36.78 3.66
2190 3117 3.582998 AATCATGAACGGTGGATCCAT 57.417 42.857 19.62 0.30 35.57 3.41
2192 3119 4.073293 AGTAATCATGAACGGTGGATCC 57.927 45.455 4.20 4.20 0.00 3.36
2197 3128 5.179368 ACTGTCAAAGTAATCATGAACGGTG 59.821 40.000 0.00 0.00 37.36 4.94
2208 3139 8.409358 AAAAGGCATTCTACTGTCAAAGTAAT 57.591 30.769 0.00 0.00 40.92 1.89
2241 3172 7.789341 TTTTGTATTCGTTGCATCAACATAC 57.211 32.000 9.90 10.33 43.70 2.39
2243 3174 9.022915 CATATTTTGTATTCGTTGCATCAACAT 57.977 29.630 9.90 0.48 43.70 2.71
2291 3230 9.042008 CGTCCTTTATTTATTAGCACATACTGT 57.958 33.333 0.00 0.00 0.00 3.55
2292 3231 8.009974 GCGTCCTTTATTTATTAGCACATACTG 58.990 37.037 0.00 0.00 0.00 2.74
2293 3232 7.095774 CGCGTCCTTTATTTATTAGCACATACT 60.096 37.037 0.00 0.00 0.00 2.12
2294 3233 7.007697 CGCGTCCTTTATTTATTAGCACATAC 58.992 38.462 0.00 0.00 0.00 2.39
2405 3691 1.088306 AAACAGTTTTCCACGCGACA 58.912 45.000 15.93 0.00 0.00 4.35
2469 3755 7.997107 TGCCATATAGTACTTCTTTTACACG 57.003 36.000 0.00 0.00 0.00 4.49
2478 3764 4.932200 GGTCAGCATGCCATATAGTACTTC 59.068 45.833 15.66 0.00 34.76 3.01
2479 3765 4.594920 AGGTCAGCATGCCATATAGTACTT 59.405 41.667 15.66 0.00 35.20 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.