Multiple sequence alignment - TraesCS5B01G369800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G369800 chr5B 100.000 2381 0 0 1 2381 548717702 548720082 0.000000e+00 4397.0
1 TraesCS5B01G369800 chr5B 95.000 240 11 1 1 239 452692239 452692000 2.230000e-100 375.0
2 TraesCS5B01G369800 chr5B 94.167 240 13 1 1 239 527653215 527653454 4.840000e-97 364.0
3 TraesCS5B01G369800 chr5B 93.305 239 15 1 2 239 662764478 662764240 3.770000e-93 351.0
4 TraesCS5B01G369800 chr5B 83.000 100 12 5 710 808 372212523 372212618 4.220000e-13 86.1
5 TraesCS5B01G369800 chr5D 88.390 1602 97 40 816 2381 449283720 449282172 0.000000e+00 1845.0
6 TraesCS5B01G369800 chr5D 90.265 113 9 2 240 352 449284153 449284043 1.910000e-31 147.0
7 TraesCS5B01G369800 chr5A 87.721 1637 109 31 810 2381 568167435 568165826 0.000000e+00 1825.0
8 TraesCS5B01G369800 chr3B 92.917 240 16 1 1 239 714151113 714151352 4.870000e-92 348.0
9 TraesCS5B01G369800 chr3B 92.500 240 17 1 1 239 217209319 217209558 2.270000e-90 342.0
10 TraesCS5B01G369800 chr3B 91.429 245 19 1 1 243 104489613 104489857 3.790000e-88 335.0
11 TraesCS5B01G369800 chr1B 92.531 241 16 1 1 239 66291183 66290943 6.300000e-91 344.0
12 TraesCS5B01G369800 chr4A 92.531 241 15 3 1 239 701270261 701270022 2.270000e-90 342.0
13 TraesCS5B01G369800 chr6B 92.083 240 18 1 1 239 697771613 697771374 1.050000e-88 337.0
14 TraesCS5B01G369800 chr7D 88.889 81 8 1 710 790 469224739 469224818 5.420000e-17 99.0
15 TraesCS5B01G369800 chr7D 91.045 67 6 0 722 788 526530903 526530969 9.060000e-15 91.6
16 TraesCS5B01G369800 chr6D 89.333 75 8 0 714 788 420237863 420237937 7.010000e-16 95.3
17 TraesCS5B01G369800 chr7A 85.542 83 12 0 706 788 75156017 75156099 1.170000e-13 87.9
18 TraesCS5B01G369800 chr2A 84.270 89 12 1 722 808 769193262 769193174 4.220000e-13 86.1
19 TraesCS5B01G369800 chr2A 82.178 101 15 2 710 808 764891214 764891115 1.520000e-12 84.2
20 TraesCS5B01G369800 chr4D 84.270 89 11 2 710 796 196639226 196639313 1.520000e-12 84.2
21 TraesCS5B01G369800 chr3A 88.235 68 8 0 710 777 664136713 664136780 5.450000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G369800 chr5B 548717702 548720082 2380 False 4397 4397 100.0000 1 2381 1 chr5B.!!$F3 2380
1 TraesCS5B01G369800 chr5D 449282172 449284153 1981 True 996 1845 89.3275 240 2381 2 chr5D.!!$R1 2141
2 TraesCS5B01G369800 chr5A 568165826 568167435 1609 True 1825 1825 87.7210 810 2381 1 chr5A.!!$R1 1571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 132 0.034059 AGACGCTGCTGCTAACAGTT 59.966 50.0 14.03 0.0 46.3 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1883 2015 0.506932 CTACACGTGTTGCTGTTCCG 59.493 55.0 28.55 0.84 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.110493 CGCTACTGCTAAGCCCAC 57.890 61.111 0.00 0.00 36.60 4.61
18 19 1.517832 CGCTACTGCTAAGCCCACT 59.482 57.895 0.00 0.00 36.60 4.00
19 20 0.744874 CGCTACTGCTAAGCCCACTA 59.255 55.000 0.00 0.00 36.60 2.74
20 21 1.269309 CGCTACTGCTAAGCCCACTAG 60.269 57.143 0.00 0.00 36.60 2.57
21 22 1.539280 GCTACTGCTAAGCCCACTAGC 60.539 57.143 0.00 0.00 37.35 3.42
22 23 3.859808 GCTACTGCTAAGCCCACTAGCT 61.860 54.545 0.00 0.00 39.68 3.32
23 24 0.539051 ACTGCTAAGCCCACTAGCTG 59.461 55.000 0.00 7.06 44.11 4.24
24 25 0.539051 CTGCTAAGCCCACTAGCTGT 59.461 55.000 0.00 0.00 44.11 4.40
25 26 1.757118 CTGCTAAGCCCACTAGCTGTA 59.243 52.381 0.00 0.00 44.11 2.74
26 27 1.757118 TGCTAAGCCCACTAGCTGTAG 59.243 52.381 0.00 0.00 44.11 2.74
27 28 1.539280 GCTAAGCCCACTAGCTGTAGC 60.539 57.143 0.00 0.00 44.11 3.58
28 29 0.744874 TAAGCCCACTAGCTGTAGCG 59.255 55.000 0.00 0.00 44.11 4.26
29 30 2.579684 AAGCCCACTAGCTGTAGCGC 62.580 60.000 0.00 0.00 44.11 5.92
33 34 4.019983 ACTAGCTGTAGCGCTGGT 57.980 55.556 22.90 11.97 45.31 4.00
37 38 3.479370 GCTGTAGCGCTGGTTGAG 58.521 61.111 22.90 9.27 0.00 3.02
38 39 2.744768 GCTGTAGCGCTGGTTGAGC 61.745 63.158 22.90 15.36 45.20 4.26
60 61 6.169287 GCGAAAAGCGTTGCTAATATTTAC 57.831 37.500 0.00 0.00 38.25 2.01
61 62 5.963586 GCGAAAAGCGTTGCTAATATTTACT 59.036 36.000 0.00 0.00 38.25 2.24
62 63 6.076092 GCGAAAAGCGTTGCTAATATTTACTG 60.076 38.462 0.00 0.00 38.25 2.74
63 64 7.177407 CGAAAAGCGTTGCTAATATTTACTGA 58.823 34.615 0.00 0.00 38.25 3.41
64 65 7.850982 CGAAAAGCGTTGCTAATATTTACTGAT 59.149 33.333 0.00 0.00 38.25 2.90
65 66 9.159470 GAAAAGCGTTGCTAATATTTACTGATC 57.841 33.333 0.00 0.00 38.25 2.92
66 67 7.786178 AAGCGTTGCTAATATTTACTGATCA 57.214 32.000 0.00 0.00 38.25 2.92
67 68 7.413475 AGCGTTGCTAATATTTACTGATCAG 57.587 36.000 21.37 21.37 36.99 2.90
68 69 6.425114 AGCGTTGCTAATATTTACTGATCAGG 59.575 38.462 26.08 8.94 36.99 3.86
69 70 6.347725 GCGTTGCTAATATTTACTGATCAGGG 60.348 42.308 26.08 3.92 0.00 4.45
70 71 6.147821 CGTTGCTAATATTTACTGATCAGGGG 59.852 42.308 26.08 3.14 0.00 4.79
71 72 6.763715 TGCTAATATTTACTGATCAGGGGT 57.236 37.500 26.08 9.39 0.00 4.95
72 73 6.533730 TGCTAATATTTACTGATCAGGGGTG 58.466 40.000 26.08 2.35 0.00 4.61
73 74 6.101150 TGCTAATATTTACTGATCAGGGGTGT 59.899 38.462 26.08 8.64 0.00 4.16
74 75 6.428159 GCTAATATTTACTGATCAGGGGTGTG 59.572 42.308 26.08 9.00 0.00 3.82
75 76 3.652057 ATTTACTGATCAGGGGTGTGG 57.348 47.619 26.08 0.02 0.00 4.17
76 77 2.038863 TTACTGATCAGGGGTGTGGT 57.961 50.000 26.08 6.45 0.00 4.16
77 78 1.275666 TACTGATCAGGGGTGTGGTG 58.724 55.000 26.08 0.00 0.00 4.17
78 79 0.768221 ACTGATCAGGGGTGTGGTGT 60.768 55.000 26.08 0.00 0.00 4.16
79 80 0.401738 CTGATCAGGGGTGTGGTGTT 59.598 55.000 15.38 0.00 0.00 3.32
80 81 0.850100 TGATCAGGGGTGTGGTGTTT 59.150 50.000 0.00 0.00 0.00 2.83
81 82 1.216678 TGATCAGGGGTGTGGTGTTTT 59.783 47.619 0.00 0.00 0.00 2.43
82 83 2.443632 TGATCAGGGGTGTGGTGTTTTA 59.556 45.455 0.00 0.00 0.00 1.52
83 84 2.351706 TCAGGGGTGTGGTGTTTTAC 57.648 50.000 0.00 0.00 0.00 2.01
84 85 1.564818 TCAGGGGTGTGGTGTTTTACA 59.435 47.619 0.00 0.00 0.00 2.41
100 101 7.075741 GTGTTTTACACTTAGCAGTAATGTGG 58.924 38.462 2.82 0.00 45.27 4.17
101 102 6.205853 TGTTTTACACTTAGCAGTAATGTGGG 59.794 38.462 0.00 0.00 33.44 4.61
102 103 3.350219 ACACTTAGCAGTAATGTGGGG 57.650 47.619 0.00 0.00 33.44 4.96
103 104 2.017049 CACTTAGCAGTAATGTGGGGC 58.983 52.381 0.00 0.00 0.00 5.80
104 105 1.916181 ACTTAGCAGTAATGTGGGGCT 59.084 47.619 0.00 0.00 38.55 5.19
105 106 3.112263 ACTTAGCAGTAATGTGGGGCTA 58.888 45.455 0.00 0.00 36.10 3.93
106 107 3.134804 ACTTAGCAGTAATGTGGGGCTAG 59.865 47.826 0.00 0.00 38.21 3.42
107 108 1.879575 AGCAGTAATGTGGGGCTAGA 58.120 50.000 0.00 0.00 32.09 2.43
108 109 2.412591 AGCAGTAATGTGGGGCTAGAT 58.587 47.619 0.00 0.00 32.09 1.98
109 110 3.587498 AGCAGTAATGTGGGGCTAGATA 58.413 45.455 0.00 0.00 32.09 1.98
110 111 3.973973 AGCAGTAATGTGGGGCTAGATAA 59.026 43.478 0.00 0.00 32.09 1.75
111 112 4.065789 GCAGTAATGTGGGGCTAGATAAC 58.934 47.826 0.00 0.00 0.00 1.89
112 113 4.444306 GCAGTAATGTGGGGCTAGATAACA 60.444 45.833 0.00 0.00 0.00 2.41
113 114 5.300752 CAGTAATGTGGGGCTAGATAACAG 58.699 45.833 0.00 0.00 0.00 3.16
114 115 5.070446 CAGTAATGTGGGGCTAGATAACAGA 59.930 44.000 0.00 0.00 0.00 3.41
115 116 4.423625 AATGTGGGGCTAGATAACAGAC 57.576 45.455 0.00 0.00 0.00 3.51
116 117 1.754803 TGTGGGGCTAGATAACAGACG 59.245 52.381 0.00 0.00 0.00 4.18
117 118 0.750850 TGGGGCTAGATAACAGACGC 59.249 55.000 0.00 0.00 34.65 5.19
118 119 1.041437 GGGGCTAGATAACAGACGCT 58.959 55.000 0.00 0.00 31.47 5.07
119 120 1.269831 GGGGCTAGATAACAGACGCTG 60.270 57.143 0.00 5.47 37.52 5.18
120 121 1.492720 GGCTAGATAACAGACGCTGC 58.507 55.000 0.00 0.00 34.37 5.25
121 122 1.067821 GGCTAGATAACAGACGCTGCT 59.932 52.381 0.00 0.00 34.37 4.24
122 123 2.123342 GCTAGATAACAGACGCTGCTG 58.877 52.381 0.00 3.28 41.63 4.41
123 124 2.123342 CTAGATAACAGACGCTGCTGC 58.877 52.381 5.34 5.34 39.51 5.25
124 125 0.534412 AGATAACAGACGCTGCTGCT 59.466 50.000 14.03 0.67 39.51 4.24
125 126 1.751351 AGATAACAGACGCTGCTGCTA 59.249 47.619 14.03 0.00 39.51 3.49
126 127 2.166459 AGATAACAGACGCTGCTGCTAA 59.834 45.455 14.03 0.00 39.51 3.09
127 128 1.710013 TAACAGACGCTGCTGCTAAC 58.290 50.000 14.03 4.93 39.51 2.34
128 129 0.249868 AACAGACGCTGCTGCTAACA 60.250 50.000 14.03 0.00 39.51 2.41
130 131 0.668706 CAGACGCTGCTGCTAACAGT 60.669 55.000 14.03 3.41 46.30 3.55
131 132 0.034059 AGACGCTGCTGCTAACAGTT 59.966 50.000 14.03 0.00 46.30 3.16
132 133 1.272490 AGACGCTGCTGCTAACAGTTA 59.728 47.619 14.03 0.00 46.30 2.24
133 134 1.390463 GACGCTGCTGCTAACAGTTAC 59.610 52.381 14.03 0.00 46.30 2.50
134 135 0.721718 CGCTGCTGCTAACAGTTACC 59.278 55.000 14.03 0.00 46.30 2.85
135 136 1.808411 GCTGCTGCTAACAGTTACCA 58.192 50.000 8.53 0.00 46.30 3.25
136 137 1.734465 GCTGCTGCTAACAGTTACCAG 59.266 52.381 8.53 10.31 46.30 4.00
137 138 2.872038 GCTGCTGCTAACAGTTACCAGT 60.872 50.000 14.56 0.00 46.30 4.00
138 139 3.616560 GCTGCTGCTAACAGTTACCAGTA 60.617 47.826 14.56 10.53 46.30 2.74
139 140 4.177026 CTGCTGCTAACAGTTACCAGTAG 58.823 47.826 15.40 15.40 46.30 2.57
140 141 2.930682 GCTGCTAACAGTTACCAGTAGC 59.069 50.000 14.56 11.57 46.30 3.58
141 142 3.179830 CTGCTAACAGTTACCAGTAGCG 58.820 50.000 7.30 0.00 39.22 4.26
142 143 1.925185 GCTAACAGTTACCAGTAGCGC 59.075 52.381 0.00 0.00 0.00 5.92
143 144 2.416972 GCTAACAGTTACCAGTAGCGCT 60.417 50.000 17.26 17.26 0.00 5.92
144 145 2.365408 AACAGTTACCAGTAGCGCTC 57.635 50.000 16.34 5.88 0.00 5.03
145 146 1.546961 ACAGTTACCAGTAGCGCTCT 58.453 50.000 16.34 8.57 0.00 4.09
146 147 1.893801 ACAGTTACCAGTAGCGCTCTT 59.106 47.619 16.34 0.00 0.00 2.85
147 148 2.299297 ACAGTTACCAGTAGCGCTCTTT 59.701 45.455 16.34 0.00 0.00 2.52
148 149 2.924290 CAGTTACCAGTAGCGCTCTTTC 59.076 50.000 16.34 3.15 0.00 2.62
149 150 2.826725 AGTTACCAGTAGCGCTCTTTCT 59.173 45.455 16.34 5.80 0.00 2.52
150 151 4.015084 AGTTACCAGTAGCGCTCTTTCTA 58.985 43.478 16.34 0.00 0.00 2.10
151 152 4.096682 AGTTACCAGTAGCGCTCTTTCTAG 59.903 45.833 16.34 4.46 0.00 2.43
152 153 2.724454 ACCAGTAGCGCTCTTTCTAGA 58.276 47.619 16.34 0.00 0.00 2.43
153 154 2.424246 ACCAGTAGCGCTCTTTCTAGAC 59.576 50.000 16.34 3.29 0.00 2.59
154 155 2.423892 CCAGTAGCGCTCTTTCTAGACA 59.576 50.000 16.34 0.00 0.00 3.41
155 156 3.488384 CCAGTAGCGCTCTTTCTAGACAG 60.488 52.174 16.34 0.00 0.00 3.51
156 157 3.127895 CAGTAGCGCTCTTTCTAGACAGT 59.872 47.826 16.34 0.00 0.00 3.55
157 158 2.645730 AGCGCTCTTTCTAGACAGTG 57.354 50.000 2.64 4.87 0.00 3.66
158 159 0.995728 GCGCTCTTTCTAGACAGTGC 59.004 55.000 18.63 18.63 0.00 4.40
159 160 1.403514 GCGCTCTTTCTAGACAGTGCT 60.404 52.381 23.34 0.00 32.38 4.40
160 161 2.159366 GCGCTCTTTCTAGACAGTGCTA 60.159 50.000 23.34 0.00 32.38 3.49
161 162 3.430931 CGCTCTTTCTAGACAGTGCTAC 58.569 50.000 23.34 3.72 0.00 3.58
162 163 3.127895 CGCTCTTTCTAGACAGTGCTACT 59.872 47.826 23.34 0.00 0.00 2.57
163 164 4.333095 CGCTCTTTCTAGACAGTGCTACTA 59.667 45.833 23.34 0.00 0.00 1.82
164 165 5.575019 GCTCTTTCTAGACAGTGCTACTAC 58.425 45.833 20.45 0.00 0.00 2.73
165 166 5.355910 GCTCTTTCTAGACAGTGCTACTACT 59.644 44.000 20.45 0.00 0.00 2.57
166 167 6.539464 GCTCTTTCTAGACAGTGCTACTACTA 59.461 42.308 20.45 0.00 0.00 1.82
167 168 7.066043 GCTCTTTCTAGACAGTGCTACTACTAA 59.934 40.741 20.45 0.00 0.00 2.24
168 169 8.266392 TCTTTCTAGACAGTGCTACTACTAAC 57.734 38.462 5.82 0.00 0.00 2.34
169 170 8.102047 TCTTTCTAGACAGTGCTACTACTAACT 58.898 37.037 5.82 0.00 0.00 2.24
170 171 8.632906 TTTCTAGACAGTGCTACTACTAACTT 57.367 34.615 0.00 0.00 0.00 2.66
171 172 7.846644 TCTAGACAGTGCTACTACTAACTTC 57.153 40.000 0.00 0.00 0.00 3.01
172 173 7.622713 TCTAGACAGTGCTACTACTAACTTCT 58.377 38.462 0.00 0.00 0.00 2.85
173 174 8.756927 TCTAGACAGTGCTACTACTAACTTCTA 58.243 37.037 0.00 0.00 0.00 2.10
174 175 7.852971 AGACAGTGCTACTACTAACTTCTAG 57.147 40.000 0.00 0.00 0.00 2.43
175 176 7.396418 AGACAGTGCTACTACTAACTTCTAGT 58.604 38.462 0.00 0.00 0.00 2.57
176 177 8.538701 AGACAGTGCTACTACTAACTTCTAGTA 58.461 37.037 0.00 0.00 0.00 1.82
182 183 7.176285 CTACTACTAACTTCTAGTAGCGTGG 57.824 44.000 15.61 0.00 46.65 4.94
183 184 4.880696 ACTACTAACTTCTAGTAGCGTGGG 59.119 45.833 15.61 0.00 46.65 4.61
184 185 3.022406 ACTAACTTCTAGTAGCGTGGGG 58.978 50.000 0.00 0.00 0.00 4.96
185 186 1.934410 AACTTCTAGTAGCGTGGGGT 58.066 50.000 0.00 0.00 0.00 4.95
186 187 1.472188 ACTTCTAGTAGCGTGGGGTC 58.528 55.000 0.00 0.00 0.00 4.46
187 188 1.272313 ACTTCTAGTAGCGTGGGGTCA 60.272 52.381 0.00 0.00 0.00 4.02
188 189 2.032620 CTTCTAGTAGCGTGGGGTCAT 58.967 52.381 0.00 0.00 0.00 3.06
189 190 3.220110 CTTCTAGTAGCGTGGGGTCATA 58.780 50.000 0.00 0.00 0.00 2.15
190 191 3.301794 TCTAGTAGCGTGGGGTCATAA 57.698 47.619 0.00 0.00 0.00 1.90
191 192 3.634504 TCTAGTAGCGTGGGGTCATAAA 58.365 45.455 0.00 0.00 0.00 1.40
192 193 2.685850 AGTAGCGTGGGGTCATAAAC 57.314 50.000 0.00 0.00 0.00 2.01
206 207 5.797051 GGTCATAAACCAACACTACTGGTA 58.203 41.667 0.00 0.00 46.75 3.25
207 208 6.232692 GGTCATAAACCAACACTACTGGTAA 58.767 40.000 0.00 0.00 46.75 2.85
208 209 6.711645 GGTCATAAACCAACACTACTGGTAAA 59.288 38.462 0.00 0.00 46.75 2.01
209 210 7.308169 GGTCATAAACCAACACTACTGGTAAAC 60.308 40.741 0.00 0.00 46.75 2.01
210 211 7.443272 GTCATAAACCAACACTACTGGTAAACT 59.557 37.037 0.00 0.00 46.75 2.66
211 212 7.994334 TCATAAACCAACACTACTGGTAAACTT 59.006 33.333 0.00 0.00 46.75 2.66
212 213 6.688637 AAACCAACACTACTGGTAAACTTC 57.311 37.500 0.00 0.00 46.75 3.01
213 214 5.625568 ACCAACACTACTGGTAAACTTCT 57.374 39.130 0.00 0.00 45.58 2.85
214 215 6.736110 ACCAACACTACTGGTAAACTTCTA 57.264 37.500 0.00 0.00 45.58 2.10
215 216 7.312415 ACCAACACTACTGGTAAACTTCTAT 57.688 36.000 0.00 0.00 45.58 1.98
216 217 7.384477 ACCAACACTACTGGTAAACTTCTATC 58.616 38.462 0.00 0.00 45.58 2.08
217 218 7.234988 ACCAACACTACTGGTAAACTTCTATCT 59.765 37.037 0.00 0.00 45.58 1.98
218 219 8.746530 CCAACACTACTGGTAAACTTCTATCTA 58.253 37.037 0.00 0.00 0.00 1.98
224 225 9.828852 CTACTGGTAAACTTCTATCTATAAGCG 57.171 37.037 0.00 0.00 0.00 4.68
225 226 7.659186 ACTGGTAAACTTCTATCTATAAGCGG 58.341 38.462 0.00 0.00 0.00 5.52
226 227 7.287235 ACTGGTAAACTTCTATCTATAAGCGGT 59.713 37.037 0.00 0.00 0.00 5.68
227 228 8.015185 TGGTAAACTTCTATCTATAAGCGGTT 57.985 34.615 4.76 4.76 0.00 4.44
228 229 8.480501 TGGTAAACTTCTATCTATAAGCGGTTT 58.519 33.333 4.64 0.00 0.00 3.27
229 230 9.322773 GGTAAACTTCTATCTATAAGCGGTTTT 57.677 33.333 4.64 0.00 0.00 2.43
233 234 9.968870 AACTTCTATCTATAAGCGGTTTTCTAG 57.031 33.333 4.64 5.17 0.00 2.43
234 235 9.134055 ACTTCTATCTATAAGCGGTTTTCTAGT 57.866 33.333 4.64 0.00 0.00 2.57
237 238 9.790344 TCTATCTATAAGCGGTTTTCTAGTAGT 57.210 33.333 4.64 0.25 0.00 2.73
238 239 9.828852 CTATCTATAAGCGGTTTTCTAGTAGTG 57.171 37.037 4.64 0.00 0.00 2.74
260 261 1.535444 GGAAAGGGTTTGGGGGTGG 60.535 63.158 0.00 0.00 0.00 4.61
263 264 1.384338 AAAGGGTTTGGGGGTGGGAT 61.384 55.000 0.00 0.00 0.00 3.85
264 265 2.038813 GGGTTTGGGGGTGGGATG 59.961 66.667 0.00 0.00 0.00 3.51
284 285 0.605319 TGAGCCGTTCTGCCGATTTT 60.605 50.000 0.00 0.00 0.00 1.82
285 286 0.179189 GAGCCGTTCTGCCGATTTTG 60.179 55.000 0.00 0.00 0.00 2.44
286 287 1.154035 GCCGTTCTGCCGATTTTGG 60.154 57.895 0.00 0.00 0.00 3.28
299 300 3.486108 CCGATTTTGGAGATACGACTTCG 59.514 47.826 0.00 0.00 46.33 3.79
346 347 2.933495 TCAGATAACGAGTGGGTTCG 57.067 50.000 0.00 0.00 45.70 3.95
371 436 4.022413 TCACATGATTACCCGAACCAAA 57.978 40.909 0.00 0.00 0.00 3.28
373 438 3.504134 CACATGATTACCCGAACCAAACA 59.496 43.478 0.00 0.00 0.00 2.83
374 439 3.504520 ACATGATTACCCGAACCAAACAC 59.495 43.478 0.00 0.00 0.00 3.32
375 440 3.210232 TGATTACCCGAACCAAACACA 57.790 42.857 0.00 0.00 0.00 3.72
376 441 2.879646 TGATTACCCGAACCAAACACAC 59.120 45.455 0.00 0.00 0.00 3.82
377 442 1.677942 TTACCCGAACCAAACACACC 58.322 50.000 0.00 0.00 0.00 4.16
378 443 0.179023 TACCCGAACCAAACACACCC 60.179 55.000 0.00 0.00 0.00 4.61
379 444 1.152839 CCCGAACCAAACACACCCT 60.153 57.895 0.00 0.00 0.00 4.34
380 445 0.108963 CCCGAACCAAACACACCCTA 59.891 55.000 0.00 0.00 0.00 3.53
381 446 1.519408 CCGAACCAAACACACCCTAG 58.481 55.000 0.00 0.00 0.00 3.02
382 447 0.872388 CGAACCAAACACACCCTAGC 59.128 55.000 0.00 0.00 0.00 3.42
383 448 1.542547 CGAACCAAACACACCCTAGCT 60.543 52.381 0.00 0.00 0.00 3.32
384 449 1.880027 GAACCAAACACACCCTAGCTG 59.120 52.381 0.00 0.00 0.00 4.24
385 450 0.110486 ACCAAACACACCCTAGCTGG 59.890 55.000 0.00 0.00 0.00 4.85
386 451 0.110486 CCAAACACACCCTAGCTGGT 59.890 55.000 0.00 0.00 39.96 4.00
387 452 1.478654 CCAAACACACCCTAGCTGGTT 60.479 52.381 0.00 0.00 36.12 3.67
388 453 2.306847 CAAACACACCCTAGCTGGTTT 58.693 47.619 0.00 0.00 36.12 3.27
389 454 1.981256 AACACACCCTAGCTGGTTTG 58.019 50.000 7.62 7.62 41.01 2.93
404 469 1.295792 GTTTGGCACGTGAACTGAGA 58.704 50.000 22.23 0.00 0.00 3.27
413 478 3.928992 CACGTGAACTGAGAATAGCACAT 59.071 43.478 10.90 0.00 0.00 3.21
415 480 5.750547 CACGTGAACTGAGAATAGCACATAT 59.249 40.000 10.90 0.00 0.00 1.78
416 481 5.750547 ACGTGAACTGAGAATAGCACATATG 59.249 40.000 0.00 0.00 0.00 1.78
418 483 6.051717 GTGAACTGAGAATAGCACATATGGT 58.948 40.000 7.80 0.00 40.47 3.55
423 488 7.112122 ACTGAGAATAGCACATATGGTTTTGA 58.888 34.615 7.80 0.00 37.77 2.69
426 491 8.407832 TGAGAATAGCACATATGGTTTTGATTG 58.592 33.333 7.80 0.00 37.77 2.67
432 497 6.424509 AGCACATATGGTTTTGATTGTTTGTG 59.575 34.615 7.80 0.00 30.39 3.33
433 498 6.347563 GCACATATGGTTTTGATTGTTTGTGG 60.348 38.462 7.80 0.00 33.25 4.17
440 505 5.641636 GGTTTTGATTGTTTGTGGTGAAACT 59.358 36.000 0.00 0.00 36.86 2.66
441 506 6.814146 GGTTTTGATTGTTTGTGGTGAAACTA 59.186 34.615 0.00 0.00 36.86 2.24
442 507 7.010091 GGTTTTGATTGTTTGTGGTGAAACTAG 59.990 37.037 0.00 0.00 36.86 2.57
443 508 5.766150 TGATTGTTTGTGGTGAAACTAGG 57.234 39.130 0.00 0.00 36.86 3.02
444 509 4.037446 TGATTGTTTGTGGTGAAACTAGGC 59.963 41.667 0.00 0.00 36.86 3.93
445 510 3.290948 TGTTTGTGGTGAAACTAGGCT 57.709 42.857 0.00 0.00 36.86 4.58
446 511 4.425180 TGTTTGTGGTGAAACTAGGCTA 57.575 40.909 0.00 0.00 36.86 3.93
447 512 4.385825 TGTTTGTGGTGAAACTAGGCTAG 58.614 43.478 19.83 19.83 36.86 3.42
448 513 2.762535 TGTGGTGAAACTAGGCTAGC 57.237 50.000 21.26 6.04 36.74 3.42
449 514 1.278127 TGTGGTGAAACTAGGCTAGCC 59.722 52.381 27.19 27.19 36.74 3.93
450 515 0.909623 TGGTGAAACTAGGCTAGCCC 59.090 55.000 30.42 14.14 36.74 5.19
451 516 0.909623 GGTGAAACTAGGCTAGCCCA 59.090 55.000 30.42 16.83 36.74 5.36
452 517 1.490910 GGTGAAACTAGGCTAGCCCAT 59.509 52.381 30.42 15.60 36.74 4.00
453 518 2.092375 GGTGAAACTAGGCTAGCCCATT 60.092 50.000 30.42 18.52 36.74 3.16
454 519 2.945668 GTGAAACTAGGCTAGCCCATTG 59.054 50.000 30.42 18.85 36.58 2.82
455 520 2.092429 TGAAACTAGGCTAGCCCATTGG 60.092 50.000 30.42 16.27 36.58 3.16
456 521 1.893315 AACTAGGCTAGCCCATTGGA 58.107 50.000 30.42 7.93 36.58 3.53
460 525 1.002857 AGGCTAGCCCATTGGAGTTT 58.997 50.000 30.42 4.39 36.58 2.66
484 549 6.917217 AAATTCTAGACTTGATACTGCTGC 57.083 37.500 0.00 0.00 0.00 5.25
487 552 2.575694 AGACTTGATACTGCTGCTCG 57.424 50.000 0.00 0.00 0.00 5.03
488 553 0.926846 GACTTGATACTGCTGCTCGC 59.073 55.000 0.00 0.00 39.77 5.03
491 556 0.247460 TTGATACTGCTGCTCGCACT 59.753 50.000 0.00 0.00 45.47 4.40
492 557 0.247460 TGATACTGCTGCTCGCACTT 59.753 50.000 0.00 0.00 45.47 3.16
494 559 1.325943 GATACTGCTGCTCGCACTTTC 59.674 52.381 0.00 0.00 45.47 2.62
495 560 0.670546 TACTGCTGCTCGCACTTTCC 60.671 55.000 0.00 0.00 45.47 3.13
496 561 1.670406 CTGCTGCTCGCACTTTCCT 60.670 57.895 0.00 0.00 45.47 3.36
497 562 1.227943 TGCTGCTCGCACTTTCCTT 60.228 52.632 0.00 0.00 45.47 3.36
498 563 0.034756 TGCTGCTCGCACTTTCCTTA 59.965 50.000 0.00 0.00 45.47 2.69
499 564 1.156736 GCTGCTCGCACTTTCCTTAA 58.843 50.000 0.00 0.00 38.92 1.85
500 565 1.740025 GCTGCTCGCACTTTCCTTAAT 59.260 47.619 0.00 0.00 38.92 1.40
501 566 2.162408 GCTGCTCGCACTTTCCTTAATT 59.838 45.455 0.00 0.00 38.92 1.40
502 567 3.366374 GCTGCTCGCACTTTCCTTAATTT 60.366 43.478 0.00 0.00 38.92 1.82
503 568 4.142687 GCTGCTCGCACTTTCCTTAATTTA 60.143 41.667 0.00 0.00 38.92 1.40
504 569 5.449177 GCTGCTCGCACTTTCCTTAATTTAT 60.449 40.000 0.00 0.00 38.92 1.40
505 570 6.509418 TGCTCGCACTTTCCTTAATTTATT 57.491 33.333 0.00 0.00 0.00 1.40
506 571 7.618502 TGCTCGCACTTTCCTTAATTTATTA 57.381 32.000 0.00 0.00 0.00 0.98
507 572 8.220755 TGCTCGCACTTTCCTTAATTTATTAT 57.779 30.769 0.00 0.00 0.00 1.28
508 573 9.332502 TGCTCGCACTTTCCTTAATTTATTATA 57.667 29.630 0.00 0.00 0.00 0.98
509 574 9.813080 GCTCGCACTTTCCTTAATTTATTATAG 57.187 33.333 0.00 0.00 0.00 1.31
510 575 9.813080 CTCGCACTTTCCTTAATTTATTATAGC 57.187 33.333 0.00 0.00 0.00 2.97
511 576 9.332502 TCGCACTTTCCTTAATTTATTATAGCA 57.667 29.630 0.00 0.00 0.00 3.49
520 585 9.139174 CCTTAATTTATTATAGCATTTTGGGCG 57.861 33.333 0.00 0.00 36.08 6.13
521 586 9.906660 CTTAATTTATTATAGCATTTTGGGCGA 57.093 29.630 0.00 0.00 36.08 5.54
523 588 8.761575 AATTTATTATAGCATTTTGGGCGATG 57.238 30.769 0.00 0.00 36.08 3.84
524 589 6.892658 TTATTATAGCATTTTGGGCGATGT 57.107 33.333 0.00 0.00 36.08 3.06
525 590 5.789643 ATTATAGCATTTTGGGCGATGTT 57.210 34.783 0.00 0.00 36.08 2.71
526 591 3.715628 ATAGCATTTTGGGCGATGTTC 57.284 42.857 0.00 0.00 36.08 3.18
527 592 1.255882 AGCATTTTGGGCGATGTTCA 58.744 45.000 0.00 0.00 36.08 3.18
528 593 1.826720 AGCATTTTGGGCGATGTTCAT 59.173 42.857 0.00 0.00 36.08 2.57
529 594 2.234414 AGCATTTTGGGCGATGTTCATT 59.766 40.909 0.00 0.00 36.08 2.57
530 595 2.604462 GCATTTTGGGCGATGTTCATTC 59.396 45.455 0.00 0.00 0.00 2.67
531 596 3.847542 CATTTTGGGCGATGTTCATTCA 58.152 40.909 0.00 0.00 0.00 2.57
533 598 2.488204 TTGGGCGATGTTCATTCAGA 57.512 45.000 0.00 0.00 0.00 3.27
537 602 1.672881 GGCGATGTTCATTCAGAAGGG 59.327 52.381 0.00 0.00 36.78 3.95
540 605 2.939103 CGATGTTCATTCAGAAGGGGAC 59.061 50.000 0.00 0.00 36.78 4.46
545 610 4.766891 TGTTCATTCAGAAGGGGACATTTC 59.233 41.667 0.00 0.00 36.78 2.17
547 612 3.333381 TCATTCAGAAGGGGACATTTCCA 59.667 43.478 0.00 0.00 44.98 3.53
556 621 4.489737 AGGGGACATTTCCATCGACTATA 58.510 43.478 0.00 0.00 44.98 1.31
558 623 5.548056 AGGGGACATTTCCATCGACTATAAT 59.452 40.000 0.00 0.00 44.98 1.28
559 624 5.643777 GGGGACATTTCCATCGACTATAATG 59.356 44.000 0.00 9.37 44.98 1.90
568 638 4.202212 CCATCGACTATAATGGTGGTGACA 60.202 45.833 0.00 0.00 38.10 3.58
570 640 5.196341 TCGACTATAATGGTGGTGACATC 57.804 43.478 0.00 0.00 46.14 3.06
576 646 4.319133 GGTGGTGACATCGGCAAT 57.681 55.556 0.00 0.00 46.14 3.56
579 649 2.297701 GGTGGTGACATCGGCAATATT 58.702 47.619 0.00 0.00 46.14 1.28
582 652 4.518970 GGTGGTGACATCGGCAATATTAAT 59.481 41.667 0.00 0.00 46.14 1.40
591 661 8.389779 ACATCGGCAATATTAATATGTTGTGA 57.610 30.769 8.74 8.04 35.84 3.58
597 667 6.797033 GCAATATTAATATGTTGTGACGGCTC 59.203 38.462 8.74 0.00 35.84 4.70
605 675 4.678509 TGTTGTGACGGCTCAATATTTC 57.321 40.909 9.29 0.00 31.09 2.17
606 676 3.124466 TGTTGTGACGGCTCAATATTTCG 59.876 43.478 9.29 0.00 31.09 3.46
632 702 4.181578 GTGCTCATAACGATAAGGTGTGT 58.818 43.478 0.00 0.00 0.00 3.72
636 706 5.142061 TCATAACGATAAGGTGTGTGTGT 57.858 39.130 0.00 0.00 0.00 3.72
637 707 4.926832 TCATAACGATAAGGTGTGTGTGTG 59.073 41.667 0.00 0.00 0.00 3.82
638 708 1.508632 ACGATAAGGTGTGTGTGTGC 58.491 50.000 0.00 0.00 0.00 4.57
639 709 0.438445 CGATAAGGTGTGTGTGTGCG 59.562 55.000 0.00 0.00 0.00 5.34
640 710 0.165944 GATAAGGTGTGTGTGTGCGC 59.834 55.000 0.00 0.00 0.00 6.09
641 711 1.565156 ATAAGGTGTGTGTGTGCGCG 61.565 55.000 0.00 0.00 0.00 6.86
677 747 1.122849 CGTGCTTTGATTGTGTGTGC 58.877 50.000 0.00 0.00 0.00 4.57
694 764 7.205992 TGTGTGTGCATTGTATTGTGTTAAAT 58.794 30.769 0.00 0.00 0.00 1.40
730 800 6.639563 TCAACGATGACCTGATAAAATCTCA 58.360 36.000 0.00 0.00 0.00 3.27
731 801 7.102993 TCAACGATGACCTGATAAAATCTCAA 58.897 34.615 0.00 0.00 0.00 3.02
732 802 7.278646 TCAACGATGACCTGATAAAATCTCAAG 59.721 37.037 0.00 0.00 0.00 3.02
733 803 6.878317 ACGATGACCTGATAAAATCTCAAGA 58.122 36.000 0.00 0.00 0.00 3.02
734 804 7.504403 ACGATGACCTGATAAAATCTCAAGAT 58.496 34.615 0.00 0.00 36.07 2.40
735 805 7.440556 ACGATGACCTGATAAAATCTCAAGATG 59.559 37.037 0.00 0.00 34.49 2.90
736 806 7.654923 CGATGACCTGATAAAATCTCAAGATGA 59.345 37.037 0.00 0.00 34.49 2.92
737 807 9.504708 GATGACCTGATAAAATCTCAAGATGAT 57.495 33.333 0.00 0.00 34.49 2.45
744 814 9.428097 TGATAAAATCTCAAGATGATATGTCGG 57.572 33.333 0.00 0.00 34.49 4.79
745 815 6.551385 AAAATCTCAAGATGATATGTCGGC 57.449 37.500 0.00 0.00 34.49 5.54
746 816 5.480642 AATCTCAAGATGATATGTCGGCT 57.519 39.130 0.00 0.00 34.49 5.52
747 817 4.511617 TCTCAAGATGATATGTCGGCTC 57.488 45.455 0.00 0.00 0.00 4.70
748 818 3.891366 TCTCAAGATGATATGTCGGCTCA 59.109 43.478 0.00 0.00 0.00 4.26
749 819 4.022503 TCTCAAGATGATATGTCGGCTCAG 60.023 45.833 0.00 0.00 0.00 3.35
750 820 3.638627 TCAAGATGATATGTCGGCTCAGT 59.361 43.478 0.00 0.00 0.00 3.41
751 821 3.932545 AGATGATATGTCGGCTCAGTC 57.067 47.619 0.00 0.00 0.00 3.51
752 822 3.495331 AGATGATATGTCGGCTCAGTCT 58.505 45.455 0.00 0.00 0.00 3.24
753 823 3.505680 AGATGATATGTCGGCTCAGTCTC 59.494 47.826 0.00 0.00 0.00 3.36
754 824 2.937519 TGATATGTCGGCTCAGTCTCT 58.062 47.619 0.00 0.00 0.00 3.10
755 825 3.291584 TGATATGTCGGCTCAGTCTCTT 58.708 45.455 0.00 0.00 0.00 2.85
756 826 3.067320 TGATATGTCGGCTCAGTCTCTTG 59.933 47.826 0.00 0.00 0.00 3.02
757 827 0.108424 ATGTCGGCTCAGTCTCTTGC 60.108 55.000 0.00 0.00 0.00 4.01
758 828 1.290324 GTCGGCTCAGTCTCTTGCA 59.710 57.895 0.00 0.00 0.00 4.08
759 829 0.735632 GTCGGCTCAGTCTCTTGCAG 60.736 60.000 0.00 0.00 0.00 4.41
760 830 1.447489 CGGCTCAGTCTCTTGCAGG 60.447 63.158 0.00 0.00 0.00 4.85
761 831 1.676384 GGCTCAGTCTCTTGCAGGT 59.324 57.895 0.00 0.00 0.00 4.00
762 832 0.673022 GGCTCAGTCTCTTGCAGGTG 60.673 60.000 0.00 0.00 0.00 4.00
763 833 1.297456 GCTCAGTCTCTTGCAGGTGC 61.297 60.000 0.00 0.00 42.50 5.01
764 834 0.321021 CTCAGTCTCTTGCAGGTGCT 59.679 55.000 3.18 0.00 42.66 4.40
765 835 0.761187 TCAGTCTCTTGCAGGTGCTT 59.239 50.000 3.18 0.00 42.66 3.91
766 836 1.970640 TCAGTCTCTTGCAGGTGCTTA 59.029 47.619 3.18 0.00 42.66 3.09
767 837 2.568956 TCAGTCTCTTGCAGGTGCTTAT 59.431 45.455 3.18 0.00 42.66 1.73
768 838 3.769300 TCAGTCTCTTGCAGGTGCTTATA 59.231 43.478 3.18 0.00 42.66 0.98
769 839 4.222810 TCAGTCTCTTGCAGGTGCTTATAA 59.777 41.667 3.18 0.00 42.66 0.98
770 840 4.569966 CAGTCTCTTGCAGGTGCTTATAAG 59.430 45.833 8.20 8.20 42.66 1.73
771 841 3.873952 GTCTCTTGCAGGTGCTTATAAGG 59.126 47.826 14.28 0.00 42.66 2.69
772 842 3.774766 TCTCTTGCAGGTGCTTATAAGGA 59.225 43.478 14.28 8.68 42.66 3.36
773 843 4.410228 TCTCTTGCAGGTGCTTATAAGGAT 59.590 41.667 14.28 0.00 42.66 3.24
774 844 5.602561 TCTCTTGCAGGTGCTTATAAGGATA 59.397 40.000 14.28 0.00 42.66 2.59
775 845 5.858381 TCTTGCAGGTGCTTATAAGGATAG 58.142 41.667 14.28 6.74 42.66 2.08
776 846 4.623932 TGCAGGTGCTTATAAGGATAGG 57.376 45.455 14.28 6.09 42.66 2.57
777 847 3.327757 TGCAGGTGCTTATAAGGATAGGG 59.672 47.826 14.28 4.50 42.66 3.53
778 848 3.307762 GCAGGTGCTTATAAGGATAGGGG 60.308 52.174 14.28 2.93 38.21 4.79
779 849 3.264450 CAGGTGCTTATAAGGATAGGGGG 59.736 52.174 14.28 0.00 0.00 5.40
780 850 3.115922 AGGTGCTTATAAGGATAGGGGGT 60.116 47.826 14.28 0.00 0.00 4.95
781 851 3.009143 GGTGCTTATAAGGATAGGGGGTG 59.991 52.174 14.28 0.00 0.00 4.61
782 852 3.651423 GTGCTTATAAGGATAGGGGGTGT 59.349 47.826 14.28 0.00 0.00 4.16
783 853 3.650942 TGCTTATAAGGATAGGGGGTGTG 59.349 47.826 14.28 0.00 0.00 3.82
784 854 3.651423 GCTTATAAGGATAGGGGGTGTGT 59.349 47.826 14.28 0.00 0.00 3.72
785 855 4.505039 GCTTATAAGGATAGGGGGTGTGTG 60.505 50.000 14.28 0.00 0.00 3.82
786 856 2.653543 TAAGGATAGGGGGTGTGTGT 57.346 50.000 0.00 0.00 0.00 3.72
787 857 0.991920 AAGGATAGGGGGTGTGTGTG 59.008 55.000 0.00 0.00 0.00 3.82
788 858 0.118346 AGGATAGGGGGTGTGTGTGA 59.882 55.000 0.00 0.00 0.00 3.58
789 859 0.541863 GGATAGGGGGTGTGTGTGAG 59.458 60.000 0.00 0.00 0.00 3.51
790 860 1.276622 GATAGGGGGTGTGTGTGAGT 58.723 55.000 0.00 0.00 0.00 3.41
791 861 2.463752 GATAGGGGGTGTGTGTGAGTA 58.536 52.381 0.00 0.00 0.00 2.59
792 862 2.634639 TAGGGGGTGTGTGTGAGTAT 57.365 50.000 0.00 0.00 0.00 2.12
793 863 2.634639 AGGGGGTGTGTGTGAGTATA 57.365 50.000 0.00 0.00 0.00 1.47
794 864 3.130734 AGGGGGTGTGTGTGAGTATAT 57.869 47.619 0.00 0.00 0.00 0.86
795 865 4.274794 AGGGGGTGTGTGTGAGTATATA 57.725 45.455 0.00 0.00 0.00 0.86
796 866 4.827789 AGGGGGTGTGTGTGAGTATATAT 58.172 43.478 0.00 0.00 0.00 0.86
797 867 4.593206 AGGGGGTGTGTGTGAGTATATATG 59.407 45.833 0.00 0.00 0.00 1.78
798 868 4.591498 GGGGGTGTGTGTGAGTATATATGA 59.409 45.833 0.00 0.00 0.00 2.15
799 869 5.279506 GGGGGTGTGTGTGAGTATATATGAG 60.280 48.000 0.00 0.00 0.00 2.90
800 870 5.230942 GGGTGTGTGTGAGTATATATGAGC 58.769 45.833 0.00 0.00 0.00 4.26
801 871 4.917998 GGTGTGTGTGAGTATATATGAGCG 59.082 45.833 0.00 0.00 0.00 5.03
802 872 5.507482 GGTGTGTGTGAGTATATATGAGCGT 60.507 44.000 0.00 0.00 0.00 5.07
803 873 5.399596 GTGTGTGTGAGTATATATGAGCGTG 59.600 44.000 0.00 0.00 0.00 5.34
804 874 5.067283 TGTGTGTGAGTATATATGAGCGTGT 59.933 40.000 0.00 0.00 0.00 4.49
805 875 5.399596 GTGTGTGAGTATATATGAGCGTGTG 59.600 44.000 0.00 0.00 0.00 3.82
806 876 5.067283 TGTGTGAGTATATATGAGCGTGTGT 59.933 40.000 0.00 0.00 0.00 3.72
807 877 6.261381 TGTGTGAGTATATATGAGCGTGTGTA 59.739 38.462 0.00 0.00 0.00 2.90
808 878 6.577800 GTGTGAGTATATATGAGCGTGTGTAC 59.422 42.308 0.00 0.00 0.00 2.90
815 885 9.454585 GTATATATGAGCGTGTGTACTTTGTTA 57.545 33.333 0.00 0.00 0.00 2.41
838 908 0.035439 AAATACTGGTCTGGCCCGTG 60.035 55.000 5.56 0.00 35.40 4.94
884 954 2.814835 GGTTCGGTCCCAGTGTGGT 61.815 63.158 0.00 0.00 35.17 4.16
885 955 1.597027 GTTCGGTCCCAGTGTGGTG 60.597 63.158 0.00 0.00 35.17 4.17
886 956 2.813726 TTCGGTCCCAGTGTGGTGG 61.814 63.158 0.00 0.00 35.17 4.61
938 1008 2.667199 CCCAAACCGACCGACCAC 60.667 66.667 0.00 0.00 0.00 4.16
951 1021 1.812686 CGACCACTCCAAACCCTCGA 61.813 60.000 0.00 0.00 0.00 4.04
1533 1642 3.582647 TCCGTGTAATGCCTGATCCATAT 59.417 43.478 0.00 0.00 0.00 1.78
1534 1643 3.686241 CCGTGTAATGCCTGATCCATATG 59.314 47.826 0.00 0.00 0.00 1.78
1556 1665 6.389830 TGATCACTGTTTGTAGCACATTTT 57.610 33.333 0.00 0.00 0.00 1.82
1612 1721 2.348362 CGCGAGATAACAGATTGTTGCA 59.652 45.455 0.00 0.00 41.30 4.08
1651 1762 2.320745 AATCGATGAGATGCTGTGCA 57.679 45.000 0.00 0.00 44.86 4.57
1654 1765 0.651031 CGATGAGATGCTGTGCACAG 59.349 55.000 37.09 37.09 43.04 3.66
1707 1839 6.378280 TCATACTTGATGACTGCTCTGTTAGA 59.622 38.462 0.00 0.00 39.78 2.10
1836 1968 4.162320 CCTCCCTAGTCAAAAGATGCACTA 59.838 45.833 0.00 0.00 0.00 2.74
1837 1969 5.338381 CCTCCCTAGTCAAAAGATGCACTAA 60.338 44.000 0.00 0.00 0.00 2.24
1854 1986 4.096382 GCACTAATACACATGGACCTTTGG 59.904 45.833 0.00 0.00 0.00 3.28
1883 2015 3.424962 GCGAAATAGTCTTTGCACCTCAC 60.425 47.826 0.00 0.00 35.98 3.51
1942 2090 2.836479 AAACAGTAACACAACGTGGC 57.164 45.000 0.00 0.00 37.94 5.01
1943 2091 1.740297 AACAGTAACACAACGTGGCA 58.260 45.000 0.00 0.00 37.94 4.92
2009 2157 6.186957 TCATGTATACTTTGTCCAATTGCCT 58.813 36.000 4.17 0.00 0.00 4.75
2034 2182 9.193133 CTACTTTGATCAATACTATTACCCACG 57.807 37.037 9.40 0.00 0.00 4.94
2062 2210 5.279607 CCATGGAAAACAAATGGAGTCATGT 60.280 40.000 5.56 0.00 43.00 3.21
2131 2279 4.280425 TGTCAGCCATGATTTTAACAGCAA 59.720 37.500 0.00 0.00 37.87 3.91
2164 2312 1.630878 AGTGGGGTTTCTGGTCTCATC 59.369 52.381 0.00 0.00 0.00 2.92
2172 2320 4.335416 GTTTCTGGTCTCATCCCAATCAA 58.665 43.478 0.00 0.00 0.00 2.57
2195 2343 8.030692 TCAATTGGATCAAAGTCATGTCATTTC 58.969 33.333 5.42 0.00 0.00 2.17
2243 2391 5.149973 TGGGTTACTTGCGTATCAAACTA 57.850 39.130 0.00 0.00 33.65 2.24
2249 2397 7.391786 GTTACTTGCGTATCAAACTACTGATG 58.608 38.462 0.00 0.00 36.69 3.07
2304 2454 3.555956 GGCACAGAAATATGTAGTGTCCG 59.444 47.826 0.00 0.00 32.99 4.79
2323 2473 2.670905 CCGTTGTAGAATCATGCGTTCA 59.329 45.455 11.59 0.00 0.00 3.18
2335 2485 1.741770 GCGTTCACAGTAGGCCCTG 60.742 63.158 0.00 2.65 38.45 4.45
2356 2506 3.026694 GAGGGATTTAGTTGCCTGCATT 58.973 45.455 0.00 0.00 37.60 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.539280 GCTAGTGGGCTTAGCAGTAGC 60.539 57.143 13.23 13.23 39.62 3.58
2 3 2.035632 AGCTAGTGGGCTTAGCAGTAG 58.964 52.381 6.53 4.40 39.86 2.57
3 4 1.757118 CAGCTAGTGGGCTTAGCAGTA 59.243 52.381 6.53 0.00 41.00 2.74
4 5 0.539051 CAGCTAGTGGGCTTAGCAGT 59.461 55.000 6.53 0.00 41.00 4.40
5 6 0.539051 ACAGCTAGTGGGCTTAGCAG 59.461 55.000 6.53 10.97 41.00 4.24
6 7 1.757118 CTACAGCTAGTGGGCTTAGCA 59.243 52.381 6.53 0.00 41.00 3.49
7 8 1.539280 GCTACAGCTAGTGGGCTTAGC 60.539 57.143 0.00 0.00 41.00 3.09
8 9 1.269309 CGCTACAGCTAGTGGGCTTAG 60.269 57.143 0.00 0.00 41.00 2.18
9 10 0.744874 CGCTACAGCTAGTGGGCTTA 59.255 55.000 0.00 0.00 41.00 3.09
10 11 1.517832 CGCTACAGCTAGTGGGCTT 59.482 57.895 0.00 0.00 41.00 4.35
11 12 3.082579 GCGCTACAGCTAGTGGGCT 62.083 63.158 0.00 0.00 44.10 5.19
12 13 2.586357 GCGCTACAGCTAGTGGGC 60.586 66.667 0.00 2.83 39.32 5.36
20 21 2.744768 GCTCAACCAGCGCTACAGC 61.745 63.158 10.99 9.56 38.76 4.40
21 22 3.479370 GCTCAACCAGCGCTACAG 58.521 61.111 10.99 4.37 38.76 2.74
28 29 1.441016 CGCTTTTCGCTCAACCAGC 60.441 57.895 0.00 0.00 45.85 4.85
29 30 0.307760 AACGCTTTTCGCTCAACCAG 59.692 50.000 0.00 0.00 43.23 4.00
30 31 0.028770 CAACGCTTTTCGCTCAACCA 59.971 50.000 0.00 0.00 43.23 3.67
31 32 1.268778 GCAACGCTTTTCGCTCAACC 61.269 55.000 0.00 0.00 43.23 3.77
32 33 0.317020 AGCAACGCTTTTCGCTCAAC 60.317 50.000 0.00 0.00 43.23 3.18
33 34 1.222300 TAGCAACGCTTTTCGCTCAA 58.778 45.000 0.00 0.00 43.23 3.02
34 35 1.222300 TTAGCAACGCTTTTCGCTCA 58.778 45.000 0.00 0.00 43.23 4.26
35 36 2.527442 ATTAGCAACGCTTTTCGCTC 57.473 45.000 0.00 0.00 43.23 5.03
36 37 4.616181 AATATTAGCAACGCTTTTCGCT 57.384 36.364 0.00 0.00 43.23 4.93
37 38 5.963586 AGTAAATATTAGCAACGCTTTTCGC 59.036 36.000 0.00 0.00 43.23 4.70
38 39 7.177407 TCAGTAAATATTAGCAACGCTTTTCG 58.823 34.615 0.00 0.00 40.44 3.46
39 40 9.159470 GATCAGTAAATATTAGCAACGCTTTTC 57.841 33.333 0.00 0.00 40.44 2.29
40 41 8.673711 TGATCAGTAAATATTAGCAACGCTTTT 58.326 29.630 0.00 0.00 40.44 2.27
41 42 8.208718 TGATCAGTAAATATTAGCAACGCTTT 57.791 30.769 0.00 0.00 40.44 3.51
42 43 7.041780 CCTGATCAGTAAATATTAGCAACGCTT 60.042 37.037 21.11 0.00 40.44 4.68
43 44 6.425114 CCTGATCAGTAAATATTAGCAACGCT 59.575 38.462 21.11 0.00 43.41 5.07
44 45 6.347725 CCCTGATCAGTAAATATTAGCAACGC 60.348 42.308 21.11 0.00 0.00 4.84
45 46 6.147821 CCCCTGATCAGTAAATATTAGCAACG 59.852 42.308 21.11 0.20 0.00 4.10
46 47 6.998673 ACCCCTGATCAGTAAATATTAGCAAC 59.001 38.462 21.11 0.00 0.00 4.17
47 48 6.998074 CACCCCTGATCAGTAAATATTAGCAA 59.002 38.462 21.11 0.00 0.00 3.91
48 49 6.101150 ACACCCCTGATCAGTAAATATTAGCA 59.899 38.462 21.11 0.00 0.00 3.49
49 50 6.428159 CACACCCCTGATCAGTAAATATTAGC 59.572 42.308 21.11 0.00 0.00 3.09
50 51 6.936900 CCACACCCCTGATCAGTAAATATTAG 59.063 42.308 21.11 2.66 0.00 1.73
51 52 6.388689 ACCACACCCCTGATCAGTAAATATTA 59.611 38.462 21.11 0.00 0.00 0.98
52 53 5.193728 ACCACACCCCTGATCAGTAAATATT 59.806 40.000 21.11 0.00 0.00 1.28
53 54 4.726825 ACCACACCCCTGATCAGTAAATAT 59.273 41.667 21.11 0.00 0.00 1.28
54 55 4.080582 CACCACACCCCTGATCAGTAAATA 60.081 45.833 21.11 0.00 0.00 1.40
55 56 2.919602 ACCACACCCCTGATCAGTAAAT 59.080 45.455 21.11 1.30 0.00 1.40
56 57 2.039746 CACCACACCCCTGATCAGTAAA 59.960 50.000 21.11 0.00 0.00 2.01
57 58 1.628340 CACCACACCCCTGATCAGTAA 59.372 52.381 21.11 0.00 0.00 2.24
58 59 1.275666 CACCACACCCCTGATCAGTA 58.724 55.000 21.11 0.00 0.00 2.74
59 60 0.768221 ACACCACACCCCTGATCAGT 60.768 55.000 21.11 0.79 0.00 3.41
60 61 0.401738 AACACCACACCCCTGATCAG 59.598 55.000 16.24 16.24 0.00 2.90
61 62 0.850100 AAACACCACACCCCTGATCA 59.150 50.000 0.00 0.00 0.00 2.92
62 63 1.995376 AAAACACCACACCCCTGATC 58.005 50.000 0.00 0.00 0.00 2.92
63 64 2.175931 TGTAAAACACCACACCCCTGAT 59.824 45.455 0.00 0.00 0.00 2.90
64 65 1.564818 TGTAAAACACCACACCCCTGA 59.435 47.619 0.00 0.00 0.00 3.86
65 66 1.679153 GTGTAAAACACCACACCCCTG 59.321 52.381 0.00 0.00 43.05 4.45
66 67 2.061509 GTGTAAAACACCACACCCCT 57.938 50.000 0.00 0.00 43.05 4.79
76 77 6.205853 CCCACATTACTGCTAAGTGTAAAACA 59.794 38.462 0.00 0.00 37.19 2.83
77 78 6.349033 CCCCACATTACTGCTAAGTGTAAAAC 60.349 42.308 0.00 0.00 37.19 2.43
78 79 5.708230 CCCCACATTACTGCTAAGTGTAAAA 59.292 40.000 0.00 0.00 37.19 1.52
79 80 5.250200 CCCCACATTACTGCTAAGTGTAAA 58.750 41.667 0.00 0.00 37.19 2.01
80 81 4.839121 CCCCACATTACTGCTAAGTGTAA 58.161 43.478 0.00 0.00 37.19 2.41
81 82 3.370103 GCCCCACATTACTGCTAAGTGTA 60.370 47.826 0.00 0.00 37.19 2.90
82 83 2.618045 GCCCCACATTACTGCTAAGTGT 60.618 50.000 0.00 0.00 37.19 3.55
83 84 2.017049 GCCCCACATTACTGCTAAGTG 58.983 52.381 0.00 0.00 37.19 3.16
84 85 1.916181 AGCCCCACATTACTGCTAAGT 59.084 47.619 0.00 0.00 40.67 2.24
85 86 2.717639 AGCCCCACATTACTGCTAAG 57.282 50.000 0.00 0.00 0.00 2.18
86 87 3.380393 TCTAGCCCCACATTACTGCTAA 58.620 45.455 0.00 0.00 34.41 3.09
87 88 3.040655 TCTAGCCCCACATTACTGCTA 57.959 47.619 0.00 0.00 33.63 3.49
88 89 1.879575 TCTAGCCCCACATTACTGCT 58.120 50.000 0.00 0.00 36.11 4.24
89 90 2.938956 ATCTAGCCCCACATTACTGC 57.061 50.000 0.00 0.00 0.00 4.40
90 91 5.070446 TCTGTTATCTAGCCCCACATTACTG 59.930 44.000 0.00 0.00 0.00 2.74
91 92 5.070580 GTCTGTTATCTAGCCCCACATTACT 59.929 44.000 0.00 0.00 0.00 2.24
92 93 5.298347 GTCTGTTATCTAGCCCCACATTAC 58.702 45.833 0.00 0.00 0.00 1.89
93 94 4.038763 CGTCTGTTATCTAGCCCCACATTA 59.961 45.833 0.00 0.00 0.00 1.90
94 95 3.181465 CGTCTGTTATCTAGCCCCACATT 60.181 47.826 0.00 0.00 0.00 2.71
95 96 2.365617 CGTCTGTTATCTAGCCCCACAT 59.634 50.000 0.00 0.00 0.00 3.21
96 97 1.754803 CGTCTGTTATCTAGCCCCACA 59.245 52.381 0.00 0.00 0.00 4.17
97 98 1.538419 GCGTCTGTTATCTAGCCCCAC 60.538 57.143 0.00 0.00 0.00 4.61
98 99 0.750850 GCGTCTGTTATCTAGCCCCA 59.249 55.000 0.00 0.00 0.00 4.96
99 100 1.041437 AGCGTCTGTTATCTAGCCCC 58.959 55.000 0.00 0.00 0.00 5.80
100 101 1.870167 GCAGCGTCTGTTATCTAGCCC 60.870 57.143 8.32 0.00 33.43 5.19
101 102 1.067821 AGCAGCGTCTGTTATCTAGCC 59.932 52.381 8.32 0.00 33.43 3.93
102 103 2.123342 CAGCAGCGTCTGTTATCTAGC 58.877 52.381 8.32 0.00 33.43 3.42
103 104 2.123342 GCAGCAGCGTCTGTTATCTAG 58.877 52.381 9.43 0.00 36.49 2.43
104 105 2.209838 GCAGCAGCGTCTGTTATCTA 57.790 50.000 9.43 0.00 36.49 1.98
105 106 3.056628 GCAGCAGCGTCTGTTATCT 57.943 52.632 9.43 0.00 36.49 1.98
107 108 6.648339 ACTGTTAGCAGCAGCGTCTGTTAT 62.648 45.833 6.48 0.97 46.30 1.89
108 109 5.413617 ACTGTTAGCAGCAGCGTCTGTTA 62.414 47.826 6.48 5.66 46.30 2.41
109 110 4.745004 ACTGTTAGCAGCAGCGTCTGTT 62.745 50.000 6.48 6.51 46.30 3.16
110 111 3.299484 ACTGTTAGCAGCAGCGTCTGT 62.299 52.381 6.48 0.00 46.30 3.41
111 112 0.668706 ACTGTTAGCAGCAGCGTCTG 60.669 55.000 6.48 4.21 46.30 3.51
112 113 0.034059 AACTGTTAGCAGCAGCGTCT 59.966 50.000 6.48 0.00 46.30 4.18
113 114 1.390463 GTAACTGTTAGCAGCAGCGTC 59.610 52.381 6.48 0.00 46.30 5.19
114 115 1.429463 GTAACTGTTAGCAGCAGCGT 58.571 50.000 6.48 0.00 46.30 5.07
115 116 0.721718 GGTAACTGTTAGCAGCAGCG 59.278 55.000 21.23 0.00 46.30 5.18
116 117 1.808411 TGGTAACTGTTAGCAGCAGC 58.192 50.000 24.02 5.39 46.30 5.25
127 128 2.656560 AAGAGCGCTACTGGTAACTG 57.343 50.000 11.50 0.00 42.06 3.16
128 129 2.826725 AGAAAGAGCGCTACTGGTAACT 59.173 45.455 11.50 0.00 37.61 2.24
129 130 3.233684 AGAAAGAGCGCTACTGGTAAC 57.766 47.619 11.50 0.00 0.00 2.50
130 131 4.096081 GTCTAGAAAGAGCGCTACTGGTAA 59.904 45.833 11.50 0.00 30.45 2.85
131 132 3.626670 GTCTAGAAAGAGCGCTACTGGTA 59.373 47.826 11.50 0.00 30.45 3.25
132 133 2.424246 GTCTAGAAAGAGCGCTACTGGT 59.576 50.000 11.50 1.45 30.45 4.00
133 134 2.423892 TGTCTAGAAAGAGCGCTACTGG 59.576 50.000 11.50 9.99 30.45 4.00
134 135 3.127895 ACTGTCTAGAAAGAGCGCTACTG 59.872 47.826 17.23 9.00 30.45 2.74
135 136 3.127895 CACTGTCTAGAAAGAGCGCTACT 59.872 47.826 17.23 10.46 30.45 2.57
136 137 3.430931 CACTGTCTAGAAAGAGCGCTAC 58.569 50.000 17.23 2.08 30.45 3.58
137 138 2.159366 GCACTGTCTAGAAAGAGCGCTA 60.159 50.000 17.23 0.00 30.45 4.26
138 139 1.403514 GCACTGTCTAGAAAGAGCGCT 60.404 52.381 17.23 11.27 30.45 5.92
139 140 0.995728 GCACTGTCTAGAAAGAGCGC 59.004 55.000 17.23 11.61 30.45 5.92
140 141 2.645730 AGCACTGTCTAGAAAGAGCG 57.354 50.000 22.02 9.67 35.48 5.03
141 142 4.712122 AGTAGCACTGTCTAGAAAGAGC 57.288 45.455 21.12 21.12 30.45 4.09
142 143 6.995511 AGTAGTAGCACTGTCTAGAAAGAG 57.004 41.667 17.23 9.95 30.45 2.85
143 144 8.102047 AGTTAGTAGTAGCACTGTCTAGAAAGA 58.898 37.037 17.23 0.00 0.00 2.52
144 145 8.271312 AGTTAGTAGTAGCACTGTCTAGAAAG 57.729 38.462 8.50 8.50 0.00 2.62
145 146 8.632906 AAGTTAGTAGTAGCACTGTCTAGAAA 57.367 34.615 0.00 0.00 0.00 2.52
146 147 8.102047 AGAAGTTAGTAGTAGCACTGTCTAGAA 58.898 37.037 0.00 0.00 0.00 2.10
147 148 7.622713 AGAAGTTAGTAGTAGCACTGTCTAGA 58.377 38.462 0.00 0.00 0.00 2.43
148 149 7.852971 AGAAGTTAGTAGTAGCACTGTCTAG 57.147 40.000 0.00 0.00 0.00 2.43
149 150 8.538701 ACTAGAAGTTAGTAGTAGCACTGTCTA 58.461 37.037 0.00 0.00 0.00 2.59
150 151 7.396418 ACTAGAAGTTAGTAGTAGCACTGTCT 58.604 38.462 0.00 0.00 0.00 3.41
151 152 7.614124 ACTAGAAGTTAGTAGTAGCACTGTC 57.386 40.000 0.00 0.00 0.00 3.51
152 153 8.721019 CTACTAGAAGTTAGTAGTAGCACTGT 57.279 38.462 14.59 0.00 40.96 3.55
158 159 6.202570 CCCACGCTACTAGAAGTTAGTAGTAG 59.797 46.154 19.17 19.17 46.28 2.57
159 160 6.051717 CCCACGCTACTAGAAGTTAGTAGTA 58.948 44.000 17.80 8.70 45.30 1.82
160 161 4.880696 CCCACGCTACTAGAAGTTAGTAGT 59.119 45.833 17.80 8.13 45.30 2.73
161 162 4.275443 CCCCACGCTACTAGAAGTTAGTAG 59.725 50.000 14.17 14.17 45.92 2.57
162 163 4.202441 CCCCACGCTACTAGAAGTTAGTA 58.798 47.826 0.00 0.00 0.00 1.82
163 164 3.022406 CCCCACGCTACTAGAAGTTAGT 58.978 50.000 0.00 0.00 0.00 2.24
164 165 3.022406 ACCCCACGCTACTAGAAGTTAG 58.978 50.000 0.00 0.00 0.00 2.34
165 166 3.019564 GACCCCACGCTACTAGAAGTTA 58.980 50.000 0.00 0.00 0.00 2.24
166 167 1.823610 GACCCCACGCTACTAGAAGTT 59.176 52.381 0.00 0.00 0.00 2.66
167 168 1.272313 TGACCCCACGCTACTAGAAGT 60.272 52.381 0.00 0.00 0.00 3.01
168 169 1.471119 TGACCCCACGCTACTAGAAG 58.529 55.000 0.00 0.00 0.00 2.85
169 170 2.154567 ATGACCCCACGCTACTAGAA 57.845 50.000 0.00 0.00 0.00 2.10
170 171 3.301794 TTATGACCCCACGCTACTAGA 57.698 47.619 0.00 0.00 0.00 2.43
171 172 3.492137 GGTTTATGACCCCACGCTACTAG 60.492 52.174 0.00 0.00 43.06 2.57
172 173 2.431782 GGTTTATGACCCCACGCTACTA 59.568 50.000 0.00 0.00 43.06 1.82
173 174 1.208776 GGTTTATGACCCCACGCTACT 59.791 52.381 0.00 0.00 43.06 2.57
174 175 1.660167 GGTTTATGACCCCACGCTAC 58.340 55.000 0.00 0.00 43.06 3.58
181 182 7.505171 ACCAGTAGTGTTGGTTTATGACCCC 62.505 48.000 0.00 0.00 46.57 4.95
182 183 4.506095 ACCAGTAGTGTTGGTTTATGACCC 60.506 45.833 0.00 0.00 46.57 4.46
183 184 4.648651 ACCAGTAGTGTTGGTTTATGACC 58.351 43.478 0.00 0.00 46.57 4.02
184 185 7.443272 AGTTTACCAGTAGTGTTGGTTTATGAC 59.557 37.037 1.84 0.00 46.57 3.06
185 186 7.511268 AGTTTACCAGTAGTGTTGGTTTATGA 58.489 34.615 1.84 0.00 46.57 2.15
186 187 7.739498 AGTTTACCAGTAGTGTTGGTTTATG 57.261 36.000 1.84 0.00 46.57 1.90
187 188 8.215736 AGAAGTTTACCAGTAGTGTTGGTTTAT 58.784 33.333 1.84 0.00 46.57 1.40
188 189 7.567458 AGAAGTTTACCAGTAGTGTTGGTTTA 58.433 34.615 1.84 0.00 46.57 2.01
189 190 6.420638 AGAAGTTTACCAGTAGTGTTGGTTT 58.579 36.000 1.84 0.00 46.57 3.27
190 191 5.997843 AGAAGTTTACCAGTAGTGTTGGTT 58.002 37.500 1.84 0.00 46.57 3.67
192 193 7.612677 AGATAGAAGTTTACCAGTAGTGTTGG 58.387 38.462 0.00 0.00 41.60 3.77
198 199 9.828852 CGCTTATAGATAGAAGTTTACCAGTAG 57.171 37.037 0.00 0.00 0.00 2.57
199 200 8.790718 CCGCTTATAGATAGAAGTTTACCAGTA 58.209 37.037 0.00 0.00 0.00 2.74
200 201 7.287235 ACCGCTTATAGATAGAAGTTTACCAGT 59.713 37.037 0.00 0.00 0.00 4.00
201 202 7.659186 ACCGCTTATAGATAGAAGTTTACCAG 58.341 38.462 0.00 0.00 0.00 4.00
202 203 7.592885 ACCGCTTATAGATAGAAGTTTACCA 57.407 36.000 0.00 0.00 0.00 3.25
203 204 8.883954 AAACCGCTTATAGATAGAAGTTTACC 57.116 34.615 0.00 0.00 0.00 2.85
207 208 9.968870 CTAGAAAACCGCTTATAGATAGAAGTT 57.031 33.333 0.00 0.00 0.00 2.66
208 209 9.134055 ACTAGAAAACCGCTTATAGATAGAAGT 57.866 33.333 0.00 0.00 0.00 3.01
211 212 9.790344 ACTACTAGAAAACCGCTTATAGATAGA 57.210 33.333 0.00 0.00 0.00 1.98
212 213 9.828852 CACTACTAGAAAACCGCTTATAGATAG 57.171 37.037 0.00 0.00 0.00 2.08
213 214 8.790718 CCACTACTAGAAAACCGCTTATAGATA 58.209 37.037 0.00 0.00 0.00 1.98
214 215 7.504911 TCCACTACTAGAAAACCGCTTATAGAT 59.495 37.037 0.00 0.00 0.00 1.98
215 216 6.830324 TCCACTACTAGAAAACCGCTTATAGA 59.170 38.462 0.00 0.00 0.00 1.98
216 217 7.035840 TCCACTACTAGAAAACCGCTTATAG 57.964 40.000 0.00 0.00 0.00 1.31
217 218 7.408756 TTCCACTACTAGAAAACCGCTTATA 57.591 36.000 0.00 0.00 0.00 0.98
218 219 5.927281 TCCACTACTAGAAAACCGCTTAT 57.073 39.130 0.00 0.00 0.00 1.73
219 220 5.337009 CCTTCCACTACTAGAAAACCGCTTA 60.337 44.000 0.00 0.00 0.00 3.09
220 221 4.562963 CCTTCCACTACTAGAAAACCGCTT 60.563 45.833 0.00 0.00 0.00 4.68
221 222 3.056035 CCTTCCACTACTAGAAAACCGCT 60.056 47.826 0.00 0.00 0.00 5.52
222 223 3.056322 TCCTTCCACTACTAGAAAACCGC 60.056 47.826 0.00 0.00 0.00 5.68
223 224 4.796038 TCCTTCCACTACTAGAAAACCG 57.204 45.455 0.00 0.00 0.00 4.44
224 225 5.938710 CCTTTCCTTCCACTACTAGAAAACC 59.061 44.000 0.00 0.00 0.00 3.27
225 226 5.938710 CCCTTTCCTTCCACTACTAGAAAAC 59.061 44.000 0.00 0.00 0.00 2.43
226 227 5.609708 ACCCTTTCCTTCCACTACTAGAAAA 59.390 40.000 0.00 0.00 0.00 2.29
227 228 5.160386 ACCCTTTCCTTCCACTACTAGAAA 58.840 41.667 0.00 0.00 0.00 2.52
228 229 4.759953 ACCCTTTCCTTCCACTACTAGAA 58.240 43.478 0.00 0.00 0.00 2.10
229 230 4.415224 ACCCTTTCCTTCCACTACTAGA 57.585 45.455 0.00 0.00 0.00 2.43
230 231 5.246307 CAAACCCTTTCCTTCCACTACTAG 58.754 45.833 0.00 0.00 0.00 2.57
231 232 4.042435 CCAAACCCTTTCCTTCCACTACTA 59.958 45.833 0.00 0.00 0.00 1.82
232 233 3.181433 CCAAACCCTTTCCTTCCACTACT 60.181 47.826 0.00 0.00 0.00 2.57
233 234 3.154710 CCAAACCCTTTCCTTCCACTAC 58.845 50.000 0.00 0.00 0.00 2.73
234 235 2.109304 CCCAAACCCTTTCCTTCCACTA 59.891 50.000 0.00 0.00 0.00 2.74
235 236 1.133167 CCCAAACCCTTTCCTTCCACT 60.133 52.381 0.00 0.00 0.00 4.00
236 237 1.338107 CCCAAACCCTTTCCTTCCAC 58.662 55.000 0.00 0.00 0.00 4.02
237 238 0.189822 CCCCAAACCCTTTCCTTCCA 59.810 55.000 0.00 0.00 0.00 3.53
238 239 0.544357 CCCCCAAACCCTTTCCTTCC 60.544 60.000 0.00 0.00 0.00 3.46
260 261 2.109126 GGCAGAACGGCTCACATCC 61.109 63.158 0.00 0.00 37.17 3.51
263 264 2.449031 AATCGGCAGAACGGCTCACA 62.449 55.000 0.00 0.00 38.27 3.58
264 265 1.298859 AAATCGGCAGAACGGCTCAC 61.299 55.000 0.00 0.00 38.27 3.51
299 300 6.337853 GCATATTCGCCAGATATGTAGAAC 57.662 41.667 9.18 0.00 32.46 3.01
312 313 7.782608 CGTTATCTGAAACGGCATATTCGCC 62.783 48.000 13.54 0.00 46.47 5.54
346 347 3.128068 GGTTCGGGTAATCATGTGAAACC 59.872 47.826 8.59 8.59 34.36 3.27
371 436 0.110486 CCAAACCAGCTAGGGTGTGT 59.890 55.000 11.48 0.00 43.48 3.72
373 438 1.074951 GCCAAACCAGCTAGGGTGT 59.925 57.895 0.00 0.00 41.32 4.16
374 439 1.074775 TGCCAAACCAGCTAGGGTG 59.925 57.895 0.00 0.00 41.32 4.61
375 440 1.074951 GTGCCAAACCAGCTAGGGT 59.925 57.895 7.06 0.00 45.04 4.34
376 441 2.040544 CGTGCCAAACCAGCTAGGG 61.041 63.158 7.06 0.00 43.89 3.53
377 442 1.302511 ACGTGCCAAACCAGCTAGG 60.303 57.895 0.00 0.00 45.67 3.02
378 443 0.602638 TCACGTGCCAAACCAGCTAG 60.603 55.000 11.67 0.00 0.00 3.42
379 444 0.179043 TTCACGTGCCAAACCAGCTA 60.179 50.000 11.67 0.00 0.00 3.32
380 445 1.453015 TTCACGTGCCAAACCAGCT 60.453 52.632 11.67 0.00 0.00 4.24
381 446 1.299089 GTTCACGTGCCAAACCAGC 60.299 57.895 11.67 0.00 0.00 4.85
382 447 0.029300 CAGTTCACGTGCCAAACCAG 59.971 55.000 11.67 2.77 0.00 4.00
383 448 0.393132 TCAGTTCACGTGCCAAACCA 60.393 50.000 11.67 0.00 0.00 3.67
384 449 0.307760 CTCAGTTCACGTGCCAAACC 59.692 55.000 11.67 0.00 0.00 3.27
385 450 1.295792 TCTCAGTTCACGTGCCAAAC 58.704 50.000 11.67 10.59 0.00 2.93
386 451 2.031258 TTCTCAGTTCACGTGCCAAA 57.969 45.000 11.67 0.00 0.00 3.28
387 452 2.254546 ATTCTCAGTTCACGTGCCAA 57.745 45.000 11.67 0.00 0.00 4.52
388 453 2.930887 GCTATTCTCAGTTCACGTGCCA 60.931 50.000 11.67 0.00 0.00 4.92
389 454 1.661112 GCTATTCTCAGTTCACGTGCC 59.339 52.381 11.67 3.60 0.00 5.01
404 469 9.153721 CAAACAATCAAAACCATATGTGCTATT 57.846 29.630 1.24 0.00 0.00 1.73
413 478 6.471233 TCACCACAAACAATCAAAACCATA 57.529 33.333 0.00 0.00 0.00 2.74
415 480 4.808414 TCACCACAAACAATCAAAACCA 57.192 36.364 0.00 0.00 0.00 3.67
416 481 5.641636 AGTTTCACCACAAACAATCAAAACC 59.358 36.000 0.00 0.00 38.53 3.27
418 483 7.038659 CCTAGTTTCACCACAAACAATCAAAA 58.961 34.615 0.00 0.00 38.53 2.44
423 488 4.215109 AGCCTAGTTTCACCACAAACAAT 58.785 39.130 0.00 0.00 38.53 2.71
426 491 3.188667 GCTAGCCTAGTTTCACCACAAAC 59.811 47.826 2.29 0.00 36.64 2.93
432 497 0.909623 TGGGCTAGCCTAGTTTCACC 59.090 55.000 32.18 13.36 36.10 4.02
433 498 2.945668 CAATGGGCTAGCCTAGTTTCAC 59.054 50.000 32.18 14.09 36.10 3.18
440 505 1.893315 AACTCCAATGGGCTAGCCTA 58.107 50.000 32.18 28.06 36.10 3.93
441 506 1.002857 AAACTCCAATGGGCTAGCCT 58.997 50.000 32.18 12.06 36.10 4.58
442 507 2.729028 TAAACTCCAATGGGCTAGCC 57.271 50.000 26.55 26.55 0.00 3.93
443 508 5.360999 AGAATTTAAACTCCAATGGGCTAGC 59.639 40.000 6.04 6.04 0.00 3.42
444 509 7.993183 TCTAGAATTTAAACTCCAATGGGCTAG 59.007 37.037 0.00 0.00 0.00 3.42
445 510 7.773690 GTCTAGAATTTAAACTCCAATGGGCTA 59.226 37.037 0.00 0.00 0.00 3.93
446 511 6.603599 GTCTAGAATTTAAACTCCAATGGGCT 59.396 38.462 0.00 0.00 0.00 5.19
447 512 6.603599 AGTCTAGAATTTAAACTCCAATGGGC 59.396 38.462 0.00 0.00 0.00 5.36
448 513 8.462016 CAAGTCTAGAATTTAAACTCCAATGGG 58.538 37.037 1.94 0.00 0.00 4.00
449 514 9.231297 TCAAGTCTAGAATTTAAACTCCAATGG 57.769 33.333 1.94 0.00 0.00 3.16
460 525 7.786030 AGCAGCAGTATCAAGTCTAGAATTTA 58.214 34.615 1.94 0.00 0.00 1.40
484 549 9.813080 GCTATAATAAATTAAGGAAAGTGCGAG 57.187 33.333 0.00 0.00 0.00 5.03
494 559 9.139174 CGCCCAAAATGCTATAATAAATTAAGG 57.861 33.333 0.00 0.00 0.00 2.69
495 560 9.906660 TCGCCCAAAATGCTATAATAAATTAAG 57.093 29.630 0.00 0.00 0.00 1.85
497 562 9.853555 CATCGCCCAAAATGCTATAATAAATTA 57.146 29.630 0.00 0.00 0.00 1.40
498 563 8.367156 ACATCGCCCAAAATGCTATAATAAATT 58.633 29.630 0.00 0.00 0.00 1.82
499 564 7.895759 ACATCGCCCAAAATGCTATAATAAAT 58.104 30.769 0.00 0.00 0.00 1.40
500 565 7.283625 ACATCGCCCAAAATGCTATAATAAA 57.716 32.000 0.00 0.00 0.00 1.40
501 566 6.892658 ACATCGCCCAAAATGCTATAATAA 57.107 33.333 0.00 0.00 0.00 1.40
502 567 6.488344 TGAACATCGCCCAAAATGCTATAATA 59.512 34.615 0.00 0.00 0.00 0.98
503 568 5.301551 TGAACATCGCCCAAAATGCTATAAT 59.698 36.000 0.00 0.00 0.00 1.28
504 569 4.642437 TGAACATCGCCCAAAATGCTATAA 59.358 37.500 0.00 0.00 0.00 0.98
505 570 4.203226 TGAACATCGCCCAAAATGCTATA 58.797 39.130 0.00 0.00 0.00 1.31
506 571 3.023119 TGAACATCGCCCAAAATGCTAT 58.977 40.909 0.00 0.00 0.00 2.97
507 572 2.441410 TGAACATCGCCCAAAATGCTA 58.559 42.857 0.00 0.00 0.00 3.49
508 573 1.255882 TGAACATCGCCCAAAATGCT 58.744 45.000 0.00 0.00 0.00 3.79
509 574 2.298411 ATGAACATCGCCCAAAATGC 57.702 45.000 0.00 0.00 0.00 3.56
510 575 3.847542 TGAATGAACATCGCCCAAAATG 58.152 40.909 0.00 0.00 0.00 2.32
511 576 3.763360 TCTGAATGAACATCGCCCAAAAT 59.237 39.130 0.00 0.00 0.00 1.82
512 577 3.153130 TCTGAATGAACATCGCCCAAAA 58.847 40.909 0.00 0.00 0.00 2.44
513 578 2.789213 TCTGAATGAACATCGCCCAAA 58.211 42.857 0.00 0.00 0.00 3.28
514 579 2.488204 TCTGAATGAACATCGCCCAA 57.512 45.000 0.00 0.00 0.00 4.12
515 580 2.358957 CTTCTGAATGAACATCGCCCA 58.641 47.619 0.00 0.00 0.00 5.36
516 581 1.672881 CCTTCTGAATGAACATCGCCC 59.327 52.381 0.00 0.00 0.00 6.13
517 582 1.672881 CCCTTCTGAATGAACATCGCC 59.327 52.381 0.00 0.00 0.00 5.54
518 583 1.672881 CCCCTTCTGAATGAACATCGC 59.327 52.381 0.00 0.00 0.00 4.58
519 584 2.939103 GTCCCCTTCTGAATGAACATCG 59.061 50.000 0.00 0.00 0.00 3.84
520 585 3.955471 TGTCCCCTTCTGAATGAACATC 58.045 45.455 0.00 0.00 0.00 3.06
521 586 4.598036 ATGTCCCCTTCTGAATGAACAT 57.402 40.909 0.00 0.12 0.00 2.71
522 587 4.387026 AATGTCCCCTTCTGAATGAACA 57.613 40.909 0.00 0.00 0.00 3.18
523 588 4.158579 GGAAATGTCCCCTTCTGAATGAAC 59.841 45.833 0.00 0.00 38.08 3.18
524 589 4.202663 TGGAAATGTCCCCTTCTGAATGAA 60.203 41.667 0.00 0.00 44.23 2.57
525 590 3.333381 TGGAAATGTCCCCTTCTGAATGA 59.667 43.478 0.00 0.00 44.23 2.57
526 591 3.700538 TGGAAATGTCCCCTTCTGAATG 58.299 45.455 0.00 0.00 44.23 2.67
527 592 4.540715 GATGGAAATGTCCCCTTCTGAAT 58.459 43.478 0.00 0.00 44.23 2.57
528 593 3.622206 CGATGGAAATGTCCCCTTCTGAA 60.622 47.826 0.00 0.00 44.23 3.02
529 594 2.092968 CGATGGAAATGTCCCCTTCTGA 60.093 50.000 0.00 0.00 44.23 3.27
530 595 2.092968 TCGATGGAAATGTCCCCTTCTG 60.093 50.000 0.00 0.00 44.23 3.02
531 596 2.092914 GTCGATGGAAATGTCCCCTTCT 60.093 50.000 0.00 0.00 44.23 2.85
533 598 1.916181 AGTCGATGGAAATGTCCCCTT 59.084 47.619 0.00 0.00 44.23 3.95
537 602 6.147821 CACCATTATAGTCGATGGAAATGTCC 59.852 42.308 7.46 0.00 44.49 4.02
540 605 5.997746 ACCACCATTATAGTCGATGGAAATG 59.002 40.000 7.46 6.94 44.49 2.32
545 610 4.202212 TGTCACCACCATTATAGTCGATGG 60.202 45.833 0.00 0.00 46.57 3.51
547 612 5.564848 CGATGTCACCACCATTATAGTCGAT 60.565 44.000 0.00 0.00 0.00 3.59
556 621 0.251121 TTGCCGATGTCACCACCATT 60.251 50.000 0.00 0.00 0.00 3.16
558 623 0.615850 TATTGCCGATGTCACCACCA 59.384 50.000 0.00 0.00 0.00 4.17
559 624 1.967319 ATATTGCCGATGTCACCACC 58.033 50.000 0.00 0.00 0.00 4.61
568 638 7.360861 CCGTCACAACATATTAATATTGCCGAT 60.361 37.037 5.18 0.00 0.00 4.18
570 640 6.077197 CCGTCACAACATATTAATATTGCCG 58.923 40.000 5.18 3.75 0.00 5.69
572 642 6.668323 AGCCGTCACAACATATTAATATTGC 58.332 36.000 5.18 0.00 0.00 3.56
576 646 9.719355 ATATTGAGCCGTCACAACATATTAATA 57.281 29.630 0.00 0.00 30.10 0.98
579 649 8.445275 AAATATTGAGCCGTCACAACATATTA 57.555 30.769 0.00 0.00 28.63 0.98
582 652 5.006261 CGAAATATTGAGCCGTCACAACATA 59.994 40.000 0.00 0.00 30.10 2.29
591 661 1.134907 ACCGTCGAAATATTGAGCCGT 60.135 47.619 0.00 0.00 0.00 5.68
597 667 5.432157 GTTATGAGCACCGTCGAAATATTG 58.568 41.667 0.00 0.00 0.00 1.90
605 675 2.394545 TATCGTTATGAGCACCGTCG 57.605 50.000 0.00 0.00 0.00 5.12
606 676 3.050619 CCTTATCGTTATGAGCACCGTC 58.949 50.000 0.00 0.00 0.00 4.79
651 721 1.070175 ACAATCAAAGCACGTACGCAC 60.070 47.619 16.72 7.67 0.00 5.34
652 722 1.070242 CACAATCAAAGCACGTACGCA 60.070 47.619 16.72 0.00 0.00 5.24
653 723 1.070175 ACACAATCAAAGCACGTACGC 60.070 47.619 16.72 0.00 0.00 4.42
654 724 2.033236 ACACACAATCAAAGCACGTACG 60.033 45.455 15.01 15.01 0.00 3.67
655 725 3.288242 CACACACAATCAAAGCACGTAC 58.712 45.455 0.00 0.00 0.00 3.67
656 726 2.286713 GCACACACAATCAAAGCACGTA 60.287 45.455 0.00 0.00 0.00 3.57
657 727 1.533756 GCACACACAATCAAAGCACGT 60.534 47.619 0.00 0.00 0.00 4.49
658 728 1.122849 GCACACACAATCAAAGCACG 58.877 50.000 0.00 0.00 0.00 5.34
706 776 6.639563 TGAGATTTTATCAGGTCATCGTTGA 58.360 36.000 0.00 0.00 0.00 3.18
707 777 6.908870 TGAGATTTTATCAGGTCATCGTTG 57.091 37.500 0.00 0.00 0.00 4.10
708 778 7.331026 TCTTGAGATTTTATCAGGTCATCGTT 58.669 34.615 0.00 0.00 0.00 3.85
709 779 6.878317 TCTTGAGATTTTATCAGGTCATCGT 58.122 36.000 0.00 0.00 0.00 3.73
710 780 7.654923 TCATCTTGAGATTTTATCAGGTCATCG 59.345 37.037 0.00 0.00 31.21 3.84
711 781 8.899427 TCATCTTGAGATTTTATCAGGTCATC 57.101 34.615 0.00 0.00 31.21 2.92
718 788 9.428097 CCGACATATCATCTTGAGATTTTATCA 57.572 33.333 0.00 0.00 31.21 2.15
719 789 8.386606 GCCGACATATCATCTTGAGATTTTATC 58.613 37.037 0.00 0.00 31.21 1.75
720 790 8.099537 AGCCGACATATCATCTTGAGATTTTAT 58.900 33.333 0.00 0.00 31.21 1.40
721 791 7.445121 AGCCGACATATCATCTTGAGATTTTA 58.555 34.615 0.00 0.00 31.21 1.52
722 792 6.294473 AGCCGACATATCATCTTGAGATTTT 58.706 36.000 0.00 0.00 31.21 1.82
723 793 5.862845 AGCCGACATATCATCTTGAGATTT 58.137 37.500 0.00 0.00 31.21 2.17
724 794 5.011431 TGAGCCGACATATCATCTTGAGATT 59.989 40.000 0.00 0.00 31.21 2.40
725 795 4.525874 TGAGCCGACATATCATCTTGAGAT 59.474 41.667 0.00 0.00 34.56 2.75
726 796 3.891366 TGAGCCGACATATCATCTTGAGA 59.109 43.478 0.00 0.00 0.00 3.27
727 797 4.236147 CTGAGCCGACATATCATCTTGAG 58.764 47.826 0.00 0.00 0.00 3.02
728 798 3.638627 ACTGAGCCGACATATCATCTTGA 59.361 43.478 0.00 0.00 0.00 3.02
729 799 3.986572 GACTGAGCCGACATATCATCTTG 59.013 47.826 0.00 0.00 0.00 3.02
730 800 3.894427 AGACTGAGCCGACATATCATCTT 59.106 43.478 0.00 0.00 0.00 2.40
731 801 3.495331 AGACTGAGCCGACATATCATCT 58.505 45.455 0.00 0.00 0.00 2.90
732 802 3.505680 AGAGACTGAGCCGACATATCATC 59.494 47.826 0.00 0.00 0.00 2.92
733 803 3.495331 AGAGACTGAGCCGACATATCAT 58.505 45.455 0.00 0.00 0.00 2.45
734 804 2.937519 AGAGACTGAGCCGACATATCA 58.062 47.619 0.00 0.00 0.00 2.15
735 805 3.637432 CAAGAGACTGAGCCGACATATC 58.363 50.000 0.00 0.00 0.00 1.63
736 806 2.223923 GCAAGAGACTGAGCCGACATAT 60.224 50.000 0.00 0.00 0.00 1.78
737 807 1.135139 GCAAGAGACTGAGCCGACATA 59.865 52.381 0.00 0.00 0.00 2.29
738 808 0.108424 GCAAGAGACTGAGCCGACAT 60.108 55.000 0.00 0.00 0.00 3.06
739 809 1.290324 GCAAGAGACTGAGCCGACA 59.710 57.895 0.00 0.00 0.00 4.35
740 810 0.735632 CTGCAAGAGACTGAGCCGAC 60.736 60.000 0.00 0.00 34.07 4.79
741 811 1.588597 CTGCAAGAGACTGAGCCGA 59.411 57.895 0.00 0.00 34.07 5.54
742 812 1.447489 CCTGCAAGAGACTGAGCCG 60.447 63.158 0.00 0.00 34.07 5.52
743 813 0.673022 CACCTGCAAGAGACTGAGCC 60.673 60.000 0.00 0.00 34.07 4.70
744 814 1.297456 GCACCTGCAAGAGACTGAGC 61.297 60.000 0.00 0.00 41.59 4.26
745 815 0.321021 AGCACCTGCAAGAGACTGAG 59.679 55.000 0.00 0.00 45.16 3.35
746 816 0.761187 AAGCACCTGCAAGAGACTGA 59.239 50.000 0.00 0.00 45.16 3.41
747 817 2.462456 TAAGCACCTGCAAGAGACTG 57.538 50.000 0.00 0.00 45.16 3.51
748 818 4.383552 CCTTATAAGCACCTGCAAGAGACT 60.384 45.833 6.99 0.00 45.16 3.24
749 819 3.873952 CCTTATAAGCACCTGCAAGAGAC 59.126 47.826 6.99 0.00 45.16 3.36
750 820 3.774766 TCCTTATAAGCACCTGCAAGAGA 59.225 43.478 6.99 0.00 45.16 3.10
751 821 4.142609 TCCTTATAAGCACCTGCAAGAG 57.857 45.455 6.99 0.00 45.16 2.85
752 822 4.778213 ATCCTTATAAGCACCTGCAAGA 57.222 40.909 6.99 0.00 45.16 3.02
753 823 4.999950 CCTATCCTTATAAGCACCTGCAAG 59.000 45.833 6.99 0.00 45.16 4.01
754 824 4.202461 CCCTATCCTTATAAGCACCTGCAA 60.202 45.833 6.99 0.00 45.16 4.08
755 825 3.327757 CCCTATCCTTATAAGCACCTGCA 59.672 47.826 6.99 0.00 45.16 4.41
756 826 3.307762 CCCCTATCCTTATAAGCACCTGC 60.308 52.174 6.99 0.00 42.49 4.85
757 827 3.264450 CCCCCTATCCTTATAAGCACCTG 59.736 52.174 6.99 0.00 0.00 4.00
758 828 3.115922 ACCCCCTATCCTTATAAGCACCT 60.116 47.826 6.99 0.00 0.00 4.00
759 829 3.009143 CACCCCCTATCCTTATAAGCACC 59.991 52.174 6.99 0.00 0.00 5.01
760 830 3.651423 ACACCCCCTATCCTTATAAGCAC 59.349 47.826 6.99 0.00 0.00 4.40
761 831 3.650942 CACACCCCCTATCCTTATAAGCA 59.349 47.826 6.99 0.00 0.00 3.91
762 832 3.651423 ACACACCCCCTATCCTTATAAGC 59.349 47.826 6.99 0.00 0.00 3.09
763 833 4.658901 ACACACACCCCCTATCCTTATAAG 59.341 45.833 5.43 5.43 0.00 1.73
764 834 4.410883 CACACACACCCCCTATCCTTATAA 59.589 45.833 0.00 0.00 0.00 0.98
765 835 3.971305 CACACACACCCCCTATCCTTATA 59.029 47.826 0.00 0.00 0.00 0.98
766 836 2.777692 CACACACACCCCCTATCCTTAT 59.222 50.000 0.00 0.00 0.00 1.73
767 837 2.193127 CACACACACCCCCTATCCTTA 58.807 52.381 0.00 0.00 0.00 2.69
768 838 0.991920 CACACACACCCCCTATCCTT 59.008 55.000 0.00 0.00 0.00 3.36
769 839 0.118346 TCACACACACCCCCTATCCT 59.882 55.000 0.00 0.00 0.00 3.24
770 840 0.541863 CTCACACACACCCCCTATCC 59.458 60.000 0.00 0.00 0.00 2.59
771 841 1.276622 ACTCACACACACCCCCTATC 58.723 55.000 0.00 0.00 0.00 2.08
772 842 2.634639 TACTCACACACACCCCCTAT 57.365 50.000 0.00 0.00 0.00 2.57
773 843 2.634639 ATACTCACACACACCCCCTA 57.365 50.000 0.00 0.00 0.00 3.53
774 844 2.634639 TATACTCACACACACCCCCT 57.365 50.000 0.00 0.00 0.00 4.79
775 845 4.591498 TCATATATACTCACACACACCCCC 59.409 45.833 0.00 0.00 0.00 5.40
776 846 5.784177 CTCATATATACTCACACACACCCC 58.216 45.833 0.00 0.00 0.00 4.95
777 847 5.230942 GCTCATATATACTCACACACACCC 58.769 45.833 0.00 0.00 0.00 4.61
778 848 4.917998 CGCTCATATATACTCACACACACC 59.082 45.833 0.00 0.00 0.00 4.16
779 849 5.399596 CACGCTCATATATACTCACACACAC 59.600 44.000 0.00 0.00 0.00 3.82
780 850 5.067283 ACACGCTCATATATACTCACACACA 59.933 40.000 0.00 0.00 0.00 3.72
781 851 5.399596 CACACGCTCATATATACTCACACAC 59.600 44.000 0.00 0.00 0.00 3.82
782 852 5.067283 ACACACGCTCATATATACTCACACA 59.933 40.000 0.00 0.00 0.00 3.72
783 853 5.520632 ACACACGCTCATATATACTCACAC 58.479 41.667 0.00 0.00 0.00 3.82
784 854 5.767816 ACACACGCTCATATATACTCACA 57.232 39.130 0.00 0.00 0.00 3.58
785 855 6.900189 AGTACACACGCTCATATATACTCAC 58.100 40.000 0.00 0.00 0.00 3.51
786 856 7.506328 AAGTACACACGCTCATATATACTCA 57.494 36.000 0.00 0.00 0.00 3.41
787 857 7.861372 ACAAAGTACACACGCTCATATATACTC 59.139 37.037 0.00 0.00 0.00 2.59
788 858 7.713750 ACAAAGTACACACGCTCATATATACT 58.286 34.615 0.00 0.00 0.00 2.12
789 859 7.925703 ACAAAGTACACACGCTCATATATAC 57.074 36.000 0.00 0.00 0.00 1.47
791 861 8.936070 TTAACAAAGTACACACGCTCATATAT 57.064 30.769 0.00 0.00 0.00 0.86
792 862 8.760103 TTTAACAAAGTACACACGCTCATATA 57.240 30.769 0.00 0.00 0.00 0.86
793 863 7.661127 TTTAACAAAGTACACACGCTCATAT 57.339 32.000 0.00 0.00 0.00 1.78
794 864 7.479897 TTTTAACAAAGTACACACGCTCATA 57.520 32.000 0.00 0.00 0.00 2.15
795 865 5.994887 TTTAACAAAGTACACACGCTCAT 57.005 34.783 0.00 0.00 0.00 2.90
796 866 5.798015 TTTTAACAAAGTACACACGCTCA 57.202 34.783 0.00 0.00 0.00 4.26
822 892 3.000819 CCACGGGCCAGACCAGTA 61.001 66.667 10.86 0.00 46.14 2.74
838 908 2.434359 CCTTCGGCCGTCAACTCC 60.434 66.667 27.15 0.00 0.00 3.85
886 956 2.595009 CTAAGCCGAGCTTCCCACCC 62.595 65.000 13.37 0.00 46.77 4.61
938 1008 2.359900 CTTGGATTCGAGGGTTTGGAG 58.640 52.381 0.00 0.00 0.00 3.86
1265 1365 2.366972 GCTCCTTGGCCTCCCCTA 60.367 66.667 3.32 0.00 0.00 3.53
1390 1490 3.599285 TTCACCGGGATCCACGTGC 62.599 63.158 20.44 0.00 0.00 5.34
1391 1491 1.740296 GTTCACCGGGATCCACGTG 60.740 63.158 19.58 19.58 0.00 4.49
1392 1492 2.211410 TGTTCACCGGGATCCACGT 61.211 57.895 15.23 5.53 0.00 4.49
1393 1493 1.740296 GTGTTCACCGGGATCCACG 60.740 63.158 15.23 14.37 0.00 4.94
1394 1494 1.376812 GGTGTTCACCGGGATCCAC 60.377 63.158 15.23 7.23 0.00 4.02
1473 1582 0.548510 CATTCCCCCTCTCCCACTTC 59.451 60.000 0.00 0.00 0.00 3.01
1533 1642 6.389830 AAAATGTGCTACAAACAGTGATCA 57.610 33.333 0.00 0.00 0.00 2.92
1534 1643 7.359595 TGTAAAATGTGCTACAAACAGTGATC 58.640 34.615 0.00 0.00 0.00 2.92
1556 1665 5.523552 CGTGCCAAGATCATCTAAACATGTA 59.476 40.000 0.00 0.00 0.00 2.29
1591 1700 2.348362 TGCAACAATCTGTTATCTCGCG 59.652 45.455 0.00 0.00 38.77 5.87
1612 1721 6.776116 TCGATTAATAGGAGTACACTGGATGT 59.224 38.462 0.00 0.00 46.06 3.06
1627 1736 5.636543 TGCACAGCATCTCATCGATTAATAG 59.363 40.000 0.00 0.00 31.71 1.73
1635 1745 0.651031 CTGTGCACAGCATCTCATCG 59.349 55.000 32.39 7.46 41.91 3.84
1651 1762 2.025887 CCATCTAGACTTTTGGGGCTGT 60.026 50.000 0.00 0.00 0.00 4.40
1654 1765 1.064389 AGCCATCTAGACTTTTGGGGC 60.064 52.381 11.26 8.31 40.41 5.80
1658 1769 4.978083 AATGCAGCCATCTAGACTTTTG 57.022 40.909 0.00 0.00 0.00 2.44
1660 1771 5.477984 TGAAAAATGCAGCCATCTAGACTTT 59.522 36.000 0.00 0.00 0.00 2.66
1707 1839 8.203485 ACAATATTGAAAACAAGGTCACACATT 58.797 29.630 22.16 0.00 0.00 2.71
1836 1968 2.888069 GCCCCAAAGGTCCATGTGTATT 60.888 50.000 0.00 0.00 38.26 1.89
1837 1969 1.341976 GCCCCAAAGGTCCATGTGTAT 60.342 52.381 0.00 0.00 38.26 2.29
1854 1986 3.304057 GCAAAGACTATTTCGCATAGCCC 60.304 47.826 2.30 0.00 0.00 5.19
1883 2015 0.506932 CTACACGTGTTGCTGTTCCG 59.493 55.000 28.55 0.84 0.00 4.30
1995 2143 5.538053 TGATCAAAGTAGGCAATTGGACAAA 59.462 36.000 7.72 0.00 0.00 2.83
2009 2157 8.145767 CCGTGGGTAATAGTATTGATCAAAGTA 58.854 37.037 13.09 9.40 0.00 2.24
2034 2182 4.040339 ACTCCATTTGTTTTCCATGGTTCC 59.960 41.667 12.58 0.00 38.93 3.62
2172 2320 6.375174 TCGAAATGACATGACTTTGATCCAAT 59.625 34.615 0.00 0.00 0.00 3.16
2189 2337 4.814234 AGCAACTTTGTACTGTCGAAATGA 59.186 37.500 0.00 0.00 0.00 2.57
2195 2343 3.944422 ACAAGCAACTTTGTACTGTCG 57.056 42.857 0.00 0.00 39.40 4.35
2243 2391 4.985538 AGGTTTATGGTTGACACATCAGT 58.014 39.130 0.00 0.00 35.83 3.41
2249 2397 9.444600 TCTAGAAATAAGGTTTATGGTTGACAC 57.555 33.333 0.00 0.00 0.00 3.67
2295 2445 4.267928 GCATGATTCTACAACGGACACTAC 59.732 45.833 0.00 0.00 0.00 2.73
2304 2454 4.152402 ACTGTGAACGCATGATTCTACAAC 59.848 41.667 0.00 0.00 0.00 3.32
2323 2473 0.044855 AATCCCTCAGGGCCTACTGT 59.955 55.000 4.08 0.00 43.94 3.55
2356 2506 6.260377 CAAACTACTCGTACGACATTATGGA 58.740 40.000 15.28 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.