Multiple sequence alignment - TraesCS5B01G369200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G369200 chr5B 100.000 7013 0 0 1 7013 548192682 548199694 0.000000e+00 12951.0
1 TraesCS5B01G369200 chr5B 82.411 1120 145 33 4911 6010 548248700 548249787 0.000000e+00 929.0
2 TraesCS5B01G369200 chr5B 91.272 676 46 8 5246 5914 548314160 548314829 0.000000e+00 909.0
3 TraesCS5B01G369200 chr5B 94.322 546 29 2 6468 7013 613679815 613679272 0.000000e+00 835.0
4 TraesCS5B01G369200 chr5B 86.055 545 72 4 3643 4186 431083428 431082887 3.650000e-162 582.0
5 TraesCS5B01G369200 chr5B 85.635 543 54 9 5828 6357 548223783 548224314 3.700000e-152 549.0
6 TraesCS5B01G369200 chr5B 88.657 335 35 3 5174 5508 548222035 548222366 8.470000e-109 405.0
7 TraesCS5B01G369200 chr5B 87.697 317 30 6 5516 5829 548222421 548222731 1.860000e-95 361.0
8 TraesCS5B01G369200 chr5D 92.901 4367 205 34 1573 5914 448813961 448818247 0.000000e+00 6250.0
9 TraesCS5B01G369200 chr5D 87.082 1316 106 18 5051 6357 448819418 448820678 0.000000e+00 1430.0
10 TraesCS5B01G369200 chr5D 88.183 897 86 8 5044 5940 448824563 448825439 0.000000e+00 1051.0
11 TraesCS5B01G369200 chr5D 83.214 1114 139 24 4911 6010 448850303 448851382 0.000000e+00 977.0
12 TraesCS5B01G369200 chr5D 81.792 703 86 20 27 719 448733826 448734496 1.030000e-152 551.0
13 TraesCS5B01G369200 chr5D 81.085 682 40 39 843 1468 448813261 448813909 4.960000e-126 462.0
14 TraesCS5B01G369200 chr5D 89.286 140 15 0 4798 4937 448817166 448817305 7.230000e-40 176.0
15 TraesCS5B01G369200 chr5D 78.017 232 35 5 4092 4323 331752216 331752001 1.590000e-26 132.0
16 TraesCS5B01G369200 chr5D 100.000 28 0 0 6401 6428 448820718 448820745 1.300000e-02 52.8
17 TraesCS5B01G369200 chr2B 93.376 3457 180 12 1520 4967 499209290 499212706 0.000000e+00 5070.0
18 TraesCS5B01G369200 chr2B 96.028 579 23 0 4798 5376 499212597 499213175 0.000000e+00 942.0
19 TraesCS5B01G369200 chr5A 92.538 2506 144 13 2474 4967 567523677 567526151 0.000000e+00 3552.0
20 TraesCS5B01G369200 chr5A 93.404 1516 84 5 4798 6310 567526012 567527514 0.000000e+00 2231.0
21 TraesCS5B01G369200 chr5A 90.021 932 78 10 1550 2476 567522514 567523435 0.000000e+00 1192.0
22 TraesCS5B01G369200 chr5A 90.159 630 32 10 5276 5884 567565651 567566271 0.000000e+00 793.0
23 TraesCS5B01G369200 chr5A 91.803 549 39 4 6468 7013 473447208 473447753 0.000000e+00 760.0
24 TraesCS5B01G369200 chr5A 82.493 714 42 36 834 1499 567521749 567522427 3.700000e-152 549.0
25 TraesCS5B01G369200 chr5A 80.628 733 102 23 3 725 567509636 567510338 1.340000e-146 531.0
26 TraesCS5B01G369200 chr5A 80.628 733 102 23 3 725 567516466 567517168 1.340000e-146 531.0
27 TraesCS5B01G369200 chr5A 80.491 733 103 23 3 725 567520652 567521354 6.230000e-145 525.0
28 TraesCS5B01G369200 chr5A 80.381 734 103 22 3 725 567512363 567513066 2.900000e-143 520.0
29 TraesCS5B01G369200 chr5A 82.696 497 34 27 834 1297 567510733 567511210 1.830000e-105 394.0
30 TraesCS5B01G369200 chr5A 82.696 497 34 27 834 1297 567513461 567513938 1.830000e-105 394.0
31 TraesCS5B01G369200 chr5A 82.294 497 36 27 834 1297 567518300 567518777 3.970000e-102 383.0
32 TraesCS5B01G369200 chr5A 80.620 387 28 23 855 1209 567517616 567517987 9.030000e-64 255.0
33 TraesCS5B01G369200 chr5A 90.000 60 0 2 1281 1340 567513937 567513990 9.760000e-09 73.1
34 TraesCS5B01G369200 chr7B 92.344 2325 128 14 1520 3834 422070983 422073267 0.000000e+00 3262.0
35 TraesCS5B01G369200 chr7B 91.002 1667 98 16 1520 3179 325505801 325507422 0.000000e+00 2200.0
36 TraesCS5B01G369200 chr7B 97.989 547 11 0 6467 7013 745235336 745235882 0.000000e+00 950.0
37 TraesCS5B01G369200 chr7B 95.748 588 22 3 4791 5376 422073681 422074267 0.000000e+00 944.0
38 TraesCS5B01G369200 chr7B 90.972 720 29 5 2461 3179 243567234 243567918 0.000000e+00 937.0
39 TraesCS5B01G369200 chr7B 95.849 530 22 0 4438 4967 422073268 422073797 0.000000e+00 857.0
40 TraesCS5B01G369200 chr7B 92.477 545 35 5 6469 7013 639395895 639396433 0.000000e+00 774.0
41 TraesCS5B01G369200 chr7B 89.919 248 23 1 1520 1767 243565717 243565962 1.140000e-82 318.0
42 TraesCS5B01G369200 chr7B 95.395 152 6 1 5225 5376 422074523 422074673 2.530000e-59 241.0
43 TraesCS5B01G369200 chr3B 91.208 1672 98 15 1520 3179 471240972 471239338 0.000000e+00 2228.0
44 TraesCS5B01G369200 chr3B 92.500 560 34 5 6458 7013 50661428 50660873 0.000000e+00 795.0
45 TraesCS5B01G369200 chr3B 89.655 58 6 0 3057 3114 532356388 532356445 2.710000e-09 75.0
46 TraesCS5B01G369200 chr1B 90.707 721 29 7 2461 3179 79781758 79782442 0.000000e+00 926.0
47 TraesCS5B01G369200 chr1B 90.811 555 38 13 6467 7013 279564931 279565480 0.000000e+00 730.0
48 TraesCS5B01G369200 chr1B 89.919 248 23 2 1520 1767 79780241 79780486 1.140000e-82 318.0
49 TraesCS5B01G369200 chr4A 91.470 551 39 6 6467 7013 472361662 472361116 0.000000e+00 750.0
50 TraesCS5B01G369200 chr4A 77.215 237 32 8 3280 3506 17723650 17723426 1.240000e-22 119.0
51 TraesCS5B01G369200 chr7A 91.423 548 40 3 6467 7013 184613640 184614181 0.000000e+00 745.0
52 TraesCS5B01G369200 chr2A 90.659 546 48 2 6469 7013 498036236 498035693 0.000000e+00 723.0
53 TraesCS5B01G369200 chr3D 87.213 610 70 5 3640 4241 504067094 504067703 0.000000e+00 688.0
54 TraesCS5B01G369200 chr3A 87.209 602 68 2 3640 4241 642385285 642385877 0.000000e+00 676.0
55 TraesCS5B01G369200 chrUn 80.628 733 102 23 3 725 418586764 418587466 1.340000e-146 531.0
56 TraesCS5B01G369200 chrUn 80.518 734 102 23 3 725 413822128 413822831 6.230000e-145 525.0
57 TraesCS5B01G369200 chrUn 82.143 476 33 27 855 1297 468109271 468109727 1.860000e-95 361.0
58 TraesCS5B01G369200 chrUn 90.000 60 0 2 1281 1340 468109726 468109779 9.760000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G369200 chr5B 548192682 548199694 7012 False 12951.000000 12951 100.000000 1 7013 1 chr5B.!!$F1 7012
1 TraesCS5B01G369200 chr5B 548248700 548249787 1087 False 929.000000 929 82.411000 4911 6010 1 chr5B.!!$F2 1099
2 TraesCS5B01G369200 chr5B 548314160 548314829 669 False 909.000000 909 91.272000 5246 5914 1 chr5B.!!$F3 668
3 TraesCS5B01G369200 chr5B 613679272 613679815 543 True 835.000000 835 94.322000 6468 7013 1 chr5B.!!$R2 545
4 TraesCS5B01G369200 chr5B 431082887 431083428 541 True 582.000000 582 86.055000 3643 4186 1 chr5B.!!$R1 543
5 TraesCS5B01G369200 chr5B 548222035 548224314 2279 False 438.333333 549 87.329667 5174 6357 3 chr5B.!!$F4 1183
6 TraesCS5B01G369200 chr5D 448813261 448825439 12178 False 1570.300000 6250 89.756167 843 6428 6 chr5D.!!$F3 5585
7 TraesCS5B01G369200 chr5D 448850303 448851382 1079 False 977.000000 977 83.214000 4911 6010 1 chr5D.!!$F2 1099
8 TraesCS5B01G369200 chr5D 448733826 448734496 670 False 551.000000 551 81.792000 27 719 1 chr5D.!!$F1 692
9 TraesCS5B01G369200 chr2B 499209290 499213175 3885 False 3006.000000 5070 94.702000 1520 5376 2 chr2B.!!$F1 3856
10 TraesCS5B01G369200 chr5A 567509636 567527514 17878 False 856.161538 3552 84.530000 3 6310 13 chr5A.!!$F3 6307
11 TraesCS5B01G369200 chr5A 567565651 567566271 620 False 793.000000 793 90.159000 5276 5884 1 chr5A.!!$F2 608
12 TraesCS5B01G369200 chr5A 473447208 473447753 545 False 760.000000 760 91.803000 6468 7013 1 chr5A.!!$F1 545
13 TraesCS5B01G369200 chr7B 325505801 325507422 1621 False 2200.000000 2200 91.002000 1520 3179 1 chr7B.!!$F1 1659
14 TraesCS5B01G369200 chr7B 422070983 422074673 3690 False 1326.000000 3262 94.834000 1520 5376 4 chr7B.!!$F5 3856
15 TraesCS5B01G369200 chr7B 745235336 745235882 546 False 950.000000 950 97.989000 6467 7013 1 chr7B.!!$F3 546
16 TraesCS5B01G369200 chr7B 639395895 639396433 538 False 774.000000 774 92.477000 6469 7013 1 chr7B.!!$F2 544
17 TraesCS5B01G369200 chr7B 243565717 243567918 2201 False 627.500000 937 90.445500 1520 3179 2 chr7B.!!$F4 1659
18 TraesCS5B01G369200 chr3B 471239338 471240972 1634 True 2228.000000 2228 91.208000 1520 3179 1 chr3B.!!$R2 1659
19 TraesCS5B01G369200 chr3B 50660873 50661428 555 True 795.000000 795 92.500000 6458 7013 1 chr3B.!!$R1 555
20 TraesCS5B01G369200 chr1B 279564931 279565480 549 False 730.000000 730 90.811000 6467 7013 1 chr1B.!!$F1 546
21 TraesCS5B01G369200 chr1B 79780241 79782442 2201 False 622.000000 926 90.313000 1520 3179 2 chr1B.!!$F2 1659
22 TraesCS5B01G369200 chr4A 472361116 472361662 546 True 750.000000 750 91.470000 6467 7013 1 chr4A.!!$R2 546
23 TraesCS5B01G369200 chr7A 184613640 184614181 541 False 745.000000 745 91.423000 6467 7013 1 chr7A.!!$F1 546
24 TraesCS5B01G369200 chr2A 498035693 498036236 543 True 723.000000 723 90.659000 6469 7013 1 chr2A.!!$R1 544
25 TraesCS5B01G369200 chr3D 504067094 504067703 609 False 688.000000 688 87.213000 3640 4241 1 chr3D.!!$F1 601
26 TraesCS5B01G369200 chr3A 642385285 642385877 592 False 676.000000 676 87.209000 3640 4241 1 chr3A.!!$F1 601
27 TraesCS5B01G369200 chrUn 418586764 418587466 702 False 531.000000 531 80.628000 3 725 1 chrUn.!!$F2 722
28 TraesCS5B01G369200 chrUn 413822128 413822831 703 False 525.000000 525 80.518000 3 725 1 chrUn.!!$F1 722
29 TraesCS5B01G369200 chrUn 468109271 468109779 508 False 217.050000 361 86.071500 855 1340 2 chrUn.!!$F3 485

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
766 1049 0.102300 CGCACATCGGTACATGGAGA 59.898 55.000 0.00 0.0 33.78 3.71 F
906 1211 0.179018 AGAGTCCACCAACACCAAGC 60.179 55.000 0.00 0.0 0.00 4.01 F
1508 12912 0.246635 ACGTATGTTCGCTGCCTCTT 59.753 50.000 0.00 0.0 0.00 2.85 F
1516 12920 0.247736 TCGCTGCCTCTTCTTCTTCC 59.752 55.000 0.00 0.0 0.00 3.46 F
1518 12922 0.393673 GCTGCCTCTTCTTCTTCCCC 60.394 60.000 0.00 0.0 0.00 4.81 F
2427 14865 1.019278 CACAGGTAATCCGCGCTTGT 61.019 55.000 5.56 0.0 39.05 3.16 F
2560 15324 1.273327 CAATGACCCTTGTTTGCCTCC 59.727 52.381 0.00 0.0 0.00 4.30 F
3361 16134 1.907936 AGCACTCAAGCAGAAGGAGAT 59.092 47.619 0.00 0.0 36.85 2.75 F
4885 17672 0.397941 TCATAGCCCTGCTGCCATAC 59.602 55.000 0.00 0.0 40.10 2.39 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1645 13103 0.178975 TCCAAATTTGACTGGCCGGT 60.179 50.000 19.82 19.82 32.33 5.28 R
2353 14791 1.611410 CCTGCTAATATCCATGCCGCA 60.611 52.381 0.00 0.00 0.00 5.69 R
3238 16010 2.519013 GACCTGCAAATGGAAGAACCT 58.481 47.619 0.00 0.00 39.86 3.50 R
3361 16134 3.733337 GAGTCAAGCTCCTTTTGTCTGA 58.267 45.455 0.00 0.00 38.27 3.27 R
3558 16331 1.524482 GATGGGAGCAGTCTGGACC 59.476 63.158 1.14 0.00 0.00 4.46 R
4377 17158 1.133199 AGTTGGTTCATTGAAGGGCCA 60.133 47.619 6.18 1.28 0.00 5.36 R
4380 17161 2.229784 GAGCAGTTGGTTCATTGAAGGG 59.770 50.000 0.00 0.00 0.00 3.95 R
5244 18203 0.250640 ATGATGAGCCAAGGATCGCC 60.251 55.000 0.00 0.00 32.52 5.54 R
6437 22600 0.031716 AGGCAGAGAGGGCATACAGA 60.032 55.000 0.00 0.00 35.46 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.081531 TGCCATTTTAATGAAAGCTCCCAG 60.082 41.667 4.07 0.00 38.70 4.45
49 50 8.207545 CAGGTTTCCTCTAGCAAGAAATAGTAT 58.792 37.037 5.36 0.00 32.54 2.12
51 52 9.478768 GGTTTCCTCTAGCAAGAAATAGTATAC 57.521 37.037 0.00 0.00 32.54 1.47
176 183 6.389830 TGTGTCTGCAAATCACTAATTGTT 57.610 33.333 13.84 0.00 33.82 2.83
184 191 8.296799 TGCAAATCACTAATTGTTCATTGAAC 57.703 30.769 20.27 20.27 42.26 3.18
198 207 7.791949 TGTTCATTGAACACAAACAAACTTTC 58.208 30.769 24.66 0.00 45.88 2.62
199 208 7.439356 TGTTCATTGAACACAAACAAACTTTCA 59.561 29.630 24.66 0.44 45.88 2.69
202 211 7.328249 TCATTGAACACAAACAAACTTTCAGAC 59.672 33.333 0.00 0.00 0.00 3.51
203 212 6.078202 TGAACACAAACAAACTTTCAGACA 57.922 33.333 0.00 0.00 0.00 3.41
235 245 8.164070 ACTAAACTGGACAACTAATCATTTCCT 58.836 33.333 0.00 0.00 0.00 3.36
236 246 9.667107 CTAAACTGGACAACTAATCATTTCCTA 57.333 33.333 0.00 0.00 0.00 2.94
239 249 6.543831 ACTGGACAACTAATCATTTCCTATGC 59.456 38.462 0.00 0.00 0.00 3.14
268 284 7.104290 ACTCAAAGTACTTTACAATCCTAGGC 58.896 38.462 20.15 0.00 0.00 3.93
280 296 2.509336 CTAGGCCAGGTTGCGTCG 60.509 66.667 5.01 0.00 0.00 5.12
281 297 4.077184 TAGGCCAGGTTGCGTCGG 62.077 66.667 5.01 0.00 0.00 4.79
285 301 2.432628 CCAGGTTGCGTCGGAGTC 60.433 66.667 0.00 0.00 0.00 3.36
287 303 2.981909 AGGTTGCGTCGGAGTCGA 60.982 61.111 0.00 0.00 42.49 4.20
298 314 3.313012 TCGGAGTCGATGTGTCATTTT 57.687 42.857 0.00 0.00 40.88 1.82
305 321 6.293407 GGAGTCGATGTGTCATTTTTCTTTGA 60.293 38.462 0.00 0.00 0.00 2.69
306 322 6.430451 AGTCGATGTGTCATTTTTCTTTGAC 58.570 36.000 0.00 0.00 42.05 3.18
315 331 6.034470 TGTCATTTTTCTTTGACGAAACAAGC 59.966 34.615 0.00 0.00 44.11 4.01
320 336 2.612212 TCTTTGACGAAACAAGCTCACC 59.388 45.455 0.00 0.00 0.00 4.02
323 339 1.668751 TGACGAAACAAGCTCACCAAC 59.331 47.619 0.00 0.00 0.00 3.77
331 347 1.066002 CAAGCTCACCAACACAAGTGG 59.934 52.381 5.08 0.00 34.67 4.00
332 348 0.255890 AGCTCACCAACACAAGTGGT 59.744 50.000 5.08 0.00 34.67 4.16
334 350 1.873591 GCTCACCAACACAAGTGGTAG 59.126 52.381 5.08 0.00 34.10 3.18
353 369 4.392138 GGTAGTACAAAGAGTGGCATTGAC 59.608 45.833 5.61 0.80 0.00 3.18
364 380 2.906939 GCATTGACGCCACACTGCA 61.907 57.895 12.66 0.00 42.92 4.41
365 381 1.081906 CATTGACGCCACACTGCAC 60.082 57.895 0.00 0.00 0.00 4.57
366 382 1.227943 ATTGACGCCACACTGCACT 60.228 52.632 0.00 0.00 0.00 4.40
369 385 2.588877 ACGCCACACTGCACTCAC 60.589 61.111 0.00 0.00 0.00 3.51
370 386 2.588596 CGCCACACTGCACTCACA 60.589 61.111 0.00 0.00 0.00 3.58
371 387 2.885676 CGCCACACTGCACTCACAC 61.886 63.158 0.00 0.00 0.00 3.82
384 400 2.031420 CACTCACACATGCAAGTTCCTG 60.031 50.000 0.00 0.00 0.00 3.86
415 431 0.678048 GCCCACTTAGTGCAGGAAGG 60.678 60.000 6.88 2.86 31.34 3.46
418 434 1.021390 CACTTAGTGCAGGAAGGCGG 61.021 60.000 0.00 0.00 36.28 6.13
451 467 5.980116 AGCAAACGAGACTAGCATATGTAAG 59.020 40.000 4.29 4.87 0.00 2.34
454 470 5.515797 ACGAGACTAGCATATGTAAGCAA 57.484 39.130 4.29 0.00 0.00 3.91
463 479 8.834465 ACTAGCATATGTAAGCAATGAGAAAAG 58.166 33.333 4.29 0.00 0.00 2.27
502 518 2.751837 TGCGTGGTGTTGTGGCAA 60.752 55.556 0.00 0.00 0.00 4.52
503 519 2.278531 GCGTGGTGTTGTGGCAAC 60.279 61.111 5.17 5.17 0.00 4.17
508 524 0.813610 TGGTGTTGTGGCAACGAGAG 60.814 55.000 7.38 0.00 42.51 3.20
516 533 1.448717 GGCAACGAGAGAAGGGCTC 60.449 63.158 0.00 0.00 44.29 4.70
524 541 3.766496 GAGAAGGGCTCGCTCTCGC 62.766 68.421 3.33 0.00 33.17 5.03
534 551 0.885879 TCGCTCTCGCCTGTCTTAAA 59.114 50.000 0.00 0.00 35.26 1.52
538 555 3.489398 CGCTCTCGCCTGTCTTAAATAGT 60.489 47.826 0.00 0.00 0.00 2.12
540 557 4.977347 GCTCTCGCCTGTCTTAAATAGTAC 59.023 45.833 0.00 0.00 0.00 2.73
542 559 4.340381 TCTCGCCTGTCTTAAATAGTACCC 59.660 45.833 0.00 0.00 0.00 3.69
543 560 4.284178 TCGCCTGTCTTAAATAGTACCCT 58.716 43.478 0.00 0.00 0.00 4.34
544 561 4.713321 TCGCCTGTCTTAAATAGTACCCTT 59.287 41.667 0.00 0.00 0.00 3.95
545 562 4.809426 CGCCTGTCTTAAATAGTACCCTTG 59.191 45.833 0.00 0.00 0.00 3.61
546 563 5.123936 GCCTGTCTTAAATAGTACCCTTGG 58.876 45.833 0.00 0.00 0.00 3.61
547 564 5.338953 GCCTGTCTTAAATAGTACCCTTGGT 60.339 44.000 0.00 0.00 40.16 3.67
548 565 6.126968 GCCTGTCTTAAATAGTACCCTTGGTA 60.127 42.308 0.00 0.00 37.09 3.25
557 574 1.851304 TACCCTTGGTACTACCCGTG 58.149 55.000 2.59 0.00 37.50 4.94
558 575 0.906282 ACCCTTGGTACTACCCGTGG 60.906 60.000 2.59 3.16 37.50 4.94
559 576 0.906282 CCCTTGGTACTACCCGTGGT 60.906 60.000 2.59 1.14 37.50 4.16
560 577 0.248289 CCTTGGTACTACCCGTGGTG 59.752 60.000 2.59 0.02 37.50 4.17
561 578 0.971386 CTTGGTACTACCCGTGGTGT 59.029 55.000 2.59 5.10 37.50 4.16
562 579 1.345415 CTTGGTACTACCCGTGGTGTT 59.655 52.381 2.59 0.00 37.50 3.32
563 580 0.680618 TGGTACTACCCGTGGTGTTG 59.319 55.000 2.59 0.15 37.50 3.33
564 581 0.681175 GGTACTACCCGTGGTGTTGT 59.319 55.000 5.90 5.14 36.19 3.32
565 582 1.606224 GGTACTACCCGTGGTGTTGTG 60.606 57.143 5.90 0.00 36.19 3.33
566 583 0.680618 TACTACCCGTGGTGTTGTGG 59.319 55.000 5.90 0.00 36.19 4.17
567 584 1.049855 ACTACCCGTGGTGTTGTGGA 61.050 55.000 5.90 0.00 36.19 4.02
568 585 0.107081 CTACCCGTGGTGTTGTGGAA 59.893 55.000 5.90 0.00 36.19 3.53
569 586 0.179051 TACCCGTGGTGTTGTGGAAC 60.179 55.000 5.90 0.00 36.19 3.62
570 587 2.190841 CCCGTGGTGTTGTGGAACC 61.191 63.158 0.00 0.00 34.36 3.62
571 588 2.539338 CCGTGGTGTTGTGGAACCG 61.539 63.158 0.00 0.00 39.47 4.44
572 589 1.521906 CGTGGTGTTGTGGAACCGA 60.522 57.895 0.00 0.00 39.47 4.69
573 590 0.882927 CGTGGTGTTGTGGAACCGAT 60.883 55.000 0.00 0.00 39.47 4.18
574 591 1.314730 GTGGTGTTGTGGAACCGATT 58.685 50.000 0.00 0.00 39.47 3.34
575 592 1.001815 GTGGTGTTGTGGAACCGATTG 60.002 52.381 0.00 0.00 39.47 2.67
576 593 1.134068 TGGTGTTGTGGAACCGATTGA 60.134 47.619 0.00 0.00 39.47 2.57
577 594 1.265905 GGTGTTGTGGAACCGATTGAC 59.734 52.381 0.00 0.00 34.36 3.18
578 595 2.218603 GTGTTGTGGAACCGATTGACT 58.781 47.619 0.00 0.00 34.36 3.41
579 596 3.395639 GTGTTGTGGAACCGATTGACTA 58.604 45.455 0.00 0.00 34.36 2.59
585 602 3.194116 GTGGAACCGATTGACTAGTACCA 59.806 47.826 0.00 0.00 0.00 3.25
591 608 4.081807 ACCGATTGACTAGTACCAAGGAAC 60.082 45.833 11.61 0.83 0.00 3.62
595 612 3.225104 TGACTAGTACCAAGGAACGTGT 58.775 45.455 0.00 0.00 35.66 4.49
604 621 1.134228 AAGGAACGTGTACCCTTGGT 58.866 50.000 9.93 0.00 38.74 3.67
620 637 6.024893 ACCCTTGGTAGTACTATGTTTGGTA 58.975 40.000 5.75 0.00 32.11 3.25
622 639 6.070653 CCCTTGGTAGTACTATGTTTGGTACA 60.071 42.308 5.75 0.00 41.04 2.90
661 679 9.467258 AATTCATTGATATTTGGTAAGCAATCG 57.533 29.630 0.00 0.00 0.00 3.34
666 684 0.519519 TTTGGTAAGCAATCGTGGCG 59.480 50.000 0.00 0.00 36.08 5.69
667 685 0.604243 TTGGTAAGCAATCGTGGCGT 60.604 50.000 0.00 0.00 36.08 5.68
684 702 2.174764 GCGTCGTACATGTACACTCAG 58.825 52.381 30.17 18.56 35.87 3.35
685 703 2.413765 GCGTCGTACATGTACACTCAGT 60.414 50.000 30.17 0.00 35.87 3.41
711 729 2.694616 AACCAAACCCTAATGCACCT 57.305 45.000 0.00 0.00 0.00 4.00
714 732 2.291346 ACCAAACCCTAATGCACCTACC 60.291 50.000 0.00 0.00 0.00 3.18
715 733 2.025321 CCAAACCCTAATGCACCTACCT 60.025 50.000 0.00 0.00 0.00 3.08
720 738 1.697982 CCTAATGCACCTACCTACCCC 59.302 57.143 0.00 0.00 0.00 4.95
723 741 0.986550 ATGCACCTACCTACCCCCAC 60.987 60.000 0.00 0.00 0.00 4.61
724 742 1.614226 GCACCTACCTACCCCCACA 60.614 63.158 0.00 0.00 0.00 4.17
726 744 1.305549 ACCTACCTACCCCCACACG 60.306 63.158 0.00 0.00 0.00 4.49
727 745 2.062177 CCTACCTACCCCCACACGG 61.062 68.421 0.00 0.00 0.00 4.94
728 746 1.305549 CTACCTACCCCCACACGGT 60.306 63.158 0.00 0.00 37.40 4.83
729 747 0.906282 CTACCTACCCCCACACGGTT 60.906 60.000 0.00 0.00 34.66 4.44
730 748 0.411452 TACCTACCCCCACACGGTTA 59.589 55.000 0.00 0.00 34.66 2.85
731 749 1.194121 ACCTACCCCCACACGGTTAC 61.194 60.000 0.00 0.00 34.66 2.50
732 750 0.906282 CCTACCCCCACACGGTTACT 60.906 60.000 0.00 0.00 34.66 2.24
733 751 1.619432 CCTACCCCCACACGGTTACTA 60.619 57.143 0.00 0.00 34.66 1.82
735 753 1.660242 ACCCCCACACGGTTACTATT 58.340 50.000 0.00 0.00 0.00 1.73
738 756 2.624636 CCCCACACGGTTACTATTGTC 58.375 52.381 0.00 0.00 0.00 3.18
739 757 2.624636 CCCACACGGTTACTATTGTCC 58.375 52.381 0.00 0.00 0.00 4.02
740 758 2.235402 CCCACACGGTTACTATTGTCCT 59.765 50.000 0.00 0.00 0.00 3.85
741 759 3.307199 CCCACACGGTTACTATTGTCCTT 60.307 47.826 0.00 0.00 0.00 3.36
742 760 3.682858 CCACACGGTTACTATTGTCCTTG 59.317 47.826 0.00 0.00 0.00 3.61
744 762 4.387862 CACACGGTTACTATTGTCCTTGTC 59.612 45.833 0.00 0.00 31.70 3.18
751 1034 1.732259 CTATTGTCCTTGTCACCGCAC 59.268 52.381 0.00 0.00 0.00 5.34
755 1038 1.374125 TCCTTGTCACCGCACATCG 60.374 57.895 0.00 0.00 38.08 3.84
766 1049 0.102300 CGCACATCGGTACATGGAGA 59.898 55.000 0.00 0.00 33.78 3.71
767 1050 1.269778 CGCACATCGGTACATGGAGAT 60.270 52.381 0.00 0.00 33.78 2.75
793 1078 2.845550 CGACGGCTCCGATCCATCA 61.846 63.158 15.95 0.00 42.83 3.07
797 1082 2.443394 GGCTCCGATCCATCACCCA 61.443 63.158 0.00 0.00 0.00 4.51
804 1089 0.403271 GATCCATCACCCATCCCCTG 59.597 60.000 0.00 0.00 0.00 4.45
817 1102 3.246112 CCCTGGACCGGAACACCA 61.246 66.667 9.46 11.22 0.00 4.17
819 1104 2.516888 CCTGGACCGGAACACCAGT 61.517 63.158 26.10 0.00 46.61 4.00
820 1105 1.301716 CTGGACCGGAACACCAGTG 60.302 63.158 22.89 0.00 44.06 3.66
830 1115 3.455152 CACCAGTGTGGACCGAGA 58.545 61.111 0.00 0.00 40.96 4.04
832 1117 1.152525 ACCAGTGTGGACCGAGACT 60.153 57.895 0.00 0.00 40.96 3.24
840 1142 2.635915 TGTGGACCGAGACTTTTGGTAT 59.364 45.455 0.00 0.00 44.09 2.73
868 1170 3.375782 AATCAAGTTCACCAAGCAAGC 57.624 42.857 0.00 0.00 0.00 4.01
870 1172 2.098614 TCAAGTTCACCAAGCAAGCAA 58.901 42.857 0.00 0.00 0.00 3.91
871 1173 2.495270 TCAAGTTCACCAAGCAAGCAAA 59.505 40.909 0.00 0.00 0.00 3.68
872 1174 2.861935 CAAGTTCACCAAGCAAGCAAAG 59.138 45.455 0.00 0.00 0.00 2.77
874 1176 1.408702 GTTCACCAAGCAAGCAAAGGA 59.591 47.619 0.00 0.00 0.00 3.36
876 1178 1.682854 TCACCAAGCAAGCAAAGGAAG 59.317 47.619 0.00 0.00 0.00 3.46
877 1179 1.410153 CACCAAGCAAGCAAAGGAAGT 59.590 47.619 0.00 0.00 0.00 3.01
878 1180 1.410153 ACCAAGCAAGCAAAGGAAGTG 59.590 47.619 0.00 0.00 0.00 3.16
879 1181 1.410153 CCAAGCAAGCAAAGGAAGTGT 59.590 47.619 0.00 0.00 0.00 3.55
880 1182 2.544486 CCAAGCAAGCAAAGGAAGTGTC 60.544 50.000 0.00 0.00 0.00 3.67
885 1187 3.553105 GCAAGCAAAGGAAGTGTCAAAAG 59.447 43.478 0.00 0.00 0.00 2.27
899 1201 3.945285 TGTCAAAAGAAGAGTCCACCAAC 59.055 43.478 0.00 0.00 0.00 3.77
900 1202 3.945285 GTCAAAAGAAGAGTCCACCAACA 59.055 43.478 0.00 0.00 0.00 3.33
901 1203 3.945285 TCAAAAGAAGAGTCCACCAACAC 59.055 43.478 0.00 0.00 0.00 3.32
902 1204 2.640316 AAGAAGAGTCCACCAACACC 57.360 50.000 0.00 0.00 0.00 4.16
906 1211 0.179018 AGAGTCCACCAACACCAAGC 60.179 55.000 0.00 0.00 0.00 4.01
918 1223 1.497286 ACACCAAGCAAGGGAAGGTTA 59.503 47.619 0.00 0.00 0.00 2.85
933 1238 2.911552 GGTTATTGACCTTTGGGGGA 57.088 50.000 0.00 0.00 45.55 4.81
935 1240 2.042569 GGTTATTGACCTTTGGGGGAGT 59.957 50.000 0.00 0.00 45.55 3.85
940 1245 0.327259 GACCTTTGGGGGAGTACACC 59.673 60.000 0.00 0.00 40.03 4.16
1083 4128 2.876645 CGAAGCGTCTCAGCCGTC 60.877 66.667 0.00 0.00 38.01 4.79
1084 4129 2.569134 GAAGCGTCTCAGCCGTCT 59.431 61.111 0.00 0.00 38.01 4.18
1085 4130 1.515304 GAAGCGTCTCAGCCGTCTC 60.515 63.158 0.00 0.00 38.01 3.36
1086 4131 2.875684 GAAGCGTCTCAGCCGTCTCC 62.876 65.000 0.00 0.00 38.01 3.71
1087 4132 3.444805 GCGTCTCAGCCGTCTCCT 61.445 66.667 0.00 0.00 0.00 3.69
1167 4238 4.947147 GGTGCCCAGCCACGAACA 62.947 66.667 0.00 0.00 36.59 3.18
1168 4239 2.904866 GTGCCCAGCCACGAACAA 60.905 61.111 0.00 0.00 0.00 2.83
1216 12581 7.111353 ACGATTTCTTTCTTTCTTTCTCTCG 57.889 36.000 0.00 0.00 0.00 4.04
1279 12659 1.749609 GAACCGAATCGCAGCCGTAC 61.750 60.000 0.00 0.00 35.54 3.67
1314 12710 4.166888 GAGAGCGGCTGCCATCCA 62.167 66.667 20.29 0.00 44.31 3.41
1315 12711 3.472943 GAGAGCGGCTGCCATCCAT 62.473 63.158 20.29 0.97 44.31 3.41
1316 12712 2.976903 GAGCGGCTGCCATCCATC 60.977 66.667 20.29 0.00 44.31 3.51
1317 12713 4.575973 AGCGGCTGCCATCCATCC 62.576 66.667 20.29 0.00 44.31 3.51
1319 12715 3.882326 CGGCTGCCATCCATCCCT 61.882 66.667 20.29 0.00 0.00 4.20
1320 12716 2.519622 CGGCTGCCATCCATCCCTA 61.520 63.158 20.29 0.00 0.00 3.53
1374 12770 5.463061 CGCCATCAAATCCAATCCAATTAAC 59.537 40.000 0.00 0.00 0.00 2.01
1386 12790 2.110352 AATTAACCCGCCGCTTCCG 61.110 57.895 0.00 0.00 0.00 4.30
1401 12805 1.276421 CTTCCGCTTCTCTCCCAAGAA 59.724 52.381 0.00 0.00 34.22 2.52
1402 12806 1.348064 TCCGCTTCTCTCCCAAGAAA 58.652 50.000 0.00 0.00 34.95 2.52
1403 12807 1.002087 TCCGCTTCTCTCCCAAGAAAC 59.998 52.381 0.00 0.00 34.95 2.78
1404 12808 1.071605 CGCTTCTCTCCCAAGAAACG 58.928 55.000 0.00 0.00 38.17 3.60
1405 12809 1.336887 CGCTTCTCTCCCAAGAAACGA 60.337 52.381 3.99 0.00 43.87 3.85
1406 12810 2.342179 GCTTCTCTCCCAAGAAACGAG 58.658 52.381 0.00 0.00 34.95 4.18
1407 12811 2.028930 GCTTCTCTCCCAAGAAACGAGA 60.029 50.000 0.00 0.00 34.95 4.04
1426 12830 3.909258 AACAAGATCGACGCGCCGT 62.909 57.895 15.85 2.55 45.10 5.68
1455 12859 0.512952 ACACGAATCGACAAGCAAGC 59.487 50.000 10.55 0.00 0.00 4.01
1456 12860 0.512518 CACGAATCGACAAGCAAGCA 59.487 50.000 10.55 0.00 0.00 3.91
1457 12861 0.512952 ACGAATCGACAAGCAAGCAC 59.487 50.000 10.55 0.00 0.00 4.40
1499 12903 2.018137 CGCACGCACGTATGTTCG 59.982 61.111 5.55 5.55 40.68 3.95
1500 12904 2.275812 GCACGCACGTATGTTCGC 60.276 61.111 7.05 0.00 38.33 4.70
1501 12905 2.726691 GCACGCACGTATGTTCGCT 61.727 57.895 7.05 0.00 38.33 4.93
1502 12906 1.057208 CACGCACGTATGTTCGCTG 59.943 57.895 7.05 1.90 38.33 5.18
1503 12907 2.020016 CGCACGTATGTTCGCTGC 59.980 61.111 0.00 0.00 35.91 5.25
1504 12908 2.399611 GCACGTATGTTCGCTGCC 59.600 61.111 0.00 0.00 34.51 4.85
1505 12909 2.100631 GCACGTATGTTCGCTGCCT 61.101 57.895 0.00 0.00 34.51 4.75
1506 12910 1.999051 CACGTATGTTCGCTGCCTC 59.001 57.895 0.00 0.00 0.00 4.70
1507 12911 0.458543 CACGTATGTTCGCTGCCTCT 60.459 55.000 0.00 0.00 0.00 3.69
1508 12912 0.246635 ACGTATGTTCGCTGCCTCTT 59.753 50.000 0.00 0.00 0.00 2.85
1509 12913 0.924090 CGTATGTTCGCTGCCTCTTC 59.076 55.000 0.00 0.00 0.00 2.87
1510 12914 1.469940 CGTATGTTCGCTGCCTCTTCT 60.470 52.381 0.00 0.00 0.00 2.85
1511 12915 2.622436 GTATGTTCGCTGCCTCTTCTT 58.378 47.619 0.00 0.00 0.00 2.52
1512 12916 1.731720 ATGTTCGCTGCCTCTTCTTC 58.268 50.000 0.00 0.00 0.00 2.87
1513 12917 0.681733 TGTTCGCTGCCTCTTCTTCT 59.318 50.000 0.00 0.00 0.00 2.85
1514 12918 1.070758 TGTTCGCTGCCTCTTCTTCTT 59.929 47.619 0.00 0.00 0.00 2.52
1515 12919 1.729517 GTTCGCTGCCTCTTCTTCTTC 59.270 52.381 0.00 0.00 0.00 2.87
1516 12920 0.247736 TCGCTGCCTCTTCTTCTTCC 59.752 55.000 0.00 0.00 0.00 3.46
1517 12921 0.742635 CGCTGCCTCTTCTTCTTCCC 60.743 60.000 0.00 0.00 0.00 3.97
1518 12922 0.393673 GCTGCCTCTTCTTCTTCCCC 60.394 60.000 0.00 0.00 0.00 4.81
1536 12940 3.376935 CTCCCCTGCTGCTACCGTG 62.377 68.421 0.00 0.00 0.00 4.94
1539 12943 2.046892 CCTGCTGCTACCGTGCTT 60.047 61.111 0.00 0.00 0.00 3.91
1540 12944 2.393768 CCTGCTGCTACCGTGCTTG 61.394 63.158 0.00 0.00 0.00 4.01
1551 12955 1.346395 ACCGTGCTTGTAGTTCATCCA 59.654 47.619 0.00 0.00 0.00 3.41
1586 13044 2.110213 TCGGCCGTGCTCTGTTTT 59.890 55.556 27.15 0.00 0.00 2.43
1694 13152 1.487558 GGTCGCCTCCCCACTAATTTA 59.512 52.381 0.00 0.00 0.00 1.40
1699 13157 2.091830 GCCTCCCCACTAATTTAAGCCT 60.092 50.000 0.00 0.00 0.00 4.58
1755 13217 3.480133 CGGGAGGCCTGGGGTAAG 61.480 72.222 12.00 0.00 0.00 2.34
1757 13219 1.618447 GGGAGGCCTGGGGTAAGAA 60.618 63.158 12.00 0.00 0.00 2.52
2031 14464 3.383620 TTTGGAATCAAATGTGCGCTT 57.616 38.095 9.73 0.00 37.89 4.68
2076 14509 7.726291 TGTTTCTCTAACCAAACCCATGATTTA 59.274 33.333 0.00 0.00 35.81 1.40
2081 14514 9.184523 CTCTAACCAAACCCATGATTTATGTTA 57.815 33.333 0.00 5.67 34.87 2.41
2142 14580 2.003548 GATGAGGTTCCAGGGCCCT 61.004 63.158 22.28 22.28 0.00 5.19
2427 14865 1.019278 CACAGGTAATCCGCGCTTGT 61.019 55.000 5.56 0.00 39.05 3.16
2433 14871 2.470821 GTAATCCGCGCTTGTCATACT 58.529 47.619 5.56 0.00 0.00 2.12
2446 14884 7.371159 CGCTTGTCATACTCCTCTTGATTATA 58.629 38.462 0.00 0.00 0.00 0.98
2447 14885 8.031864 CGCTTGTCATACTCCTCTTGATTATAT 58.968 37.037 0.00 0.00 0.00 0.86
2448 14886 9.717942 GCTTGTCATACTCCTCTTGATTATATT 57.282 33.333 0.00 0.00 0.00 1.28
2514 15278 3.500014 GGAAACACGAGTAGCTAGTGAC 58.500 50.000 16.16 0.00 38.95 3.67
2560 15324 1.273327 CAATGACCCTTGTTTGCCTCC 59.727 52.381 0.00 0.00 0.00 4.30
2629 15394 4.862371 AGAAAACCCCAACAAGTAGTGAA 58.138 39.130 0.00 0.00 0.00 3.18
2675 15440 1.955778 CAGTGCCATGTTTCTTGACCA 59.044 47.619 0.00 0.00 0.00 4.02
2790 15555 7.262048 TGTCCTTTTCTTTGGTTCACATAAAC 58.738 34.615 0.00 0.00 0.00 2.01
2801 15566 7.461182 TGGTTCACATAAACATTCTAAAGGG 57.539 36.000 0.00 0.00 0.00 3.95
2802 15567 7.007723 TGGTTCACATAAACATTCTAAAGGGT 58.992 34.615 0.00 0.00 0.00 4.34
2803 15568 7.175990 TGGTTCACATAAACATTCTAAAGGGTC 59.824 37.037 0.00 0.00 0.00 4.46
2804 15569 7.362660 GGTTCACATAAACATTCTAAAGGGTCC 60.363 40.741 0.00 0.00 0.00 4.46
2805 15570 6.785076 TCACATAAACATTCTAAAGGGTCCA 58.215 36.000 0.00 0.00 0.00 4.02
2806 15571 6.657541 TCACATAAACATTCTAAAGGGTCCAC 59.342 38.462 0.00 0.00 0.00 4.02
2828 15593 7.716998 TCCACATAAAGATTCTAAAGGCTCATC 59.283 37.037 0.00 0.00 0.00 2.92
2921 15686 6.792977 ACTACTAGCCACTTATAATGGGGAAT 59.207 38.462 12.83 3.08 37.73 3.01
2951 15717 6.485313 TGTAAAAGGTTATGGTGAACTGTCTG 59.515 38.462 0.00 0.00 0.00 3.51
3000 15766 2.025981 TCCTTGTATTGCTGAGTGCCAT 60.026 45.455 0.00 0.00 42.00 4.40
3238 16010 7.831690 TCTGTTTGCAAGGTTATATAATGTGGA 59.168 33.333 0.00 0.00 0.00 4.02
3361 16134 1.907936 AGCACTCAAGCAGAAGGAGAT 59.092 47.619 0.00 0.00 36.85 2.75
3558 16331 4.282449 CCCTTGGTAACTAAACCTTTTGGG 59.718 45.833 0.00 0.00 40.44 4.12
3694 16468 4.203226 CTCTCAGACAGCTAGATACCACA 58.797 47.826 0.00 0.00 0.00 4.17
3860 16634 4.501071 TGTTCTCGGTATTTAACTCAGGC 58.499 43.478 0.00 0.00 0.00 4.85
3916 16690 8.597167 CCTCAACTCTGTATTTCCCATCATATA 58.403 37.037 0.00 0.00 0.00 0.86
4023 16797 2.259618 GCATCTGAGCAACTGCATTTG 58.740 47.619 12.16 12.16 45.16 2.32
4188 16969 2.349912 GGAAAAAGAACAGCAGAGACGC 60.350 50.000 0.00 0.00 0.00 5.19
4290 17071 4.025040 TCATGATGTTGGAGCTGAAAGT 57.975 40.909 0.00 0.00 35.30 2.66
4312 17093 2.260822 ACATGGCAGTTCCTAGTCAGT 58.739 47.619 0.00 0.00 35.26 3.41
4377 17158 5.312443 ACAACTACCTCCCCAAGAAATTACT 59.688 40.000 0.00 0.00 0.00 2.24
4380 17161 2.291605 ACCTCCCCAAGAAATTACTGGC 60.292 50.000 0.00 0.00 0.00 4.85
4634 17415 2.816411 TGTAGGACAGGAGGTTAGTGG 58.184 52.381 0.00 0.00 0.00 4.00
4779 17566 5.256474 ACTGGTAATTCTGGAAATGTCCTG 58.744 41.667 2.89 2.58 45.22 3.86
4859 17646 2.706339 AGCTCTGCTTCCATAGTTGG 57.294 50.000 0.00 0.00 45.15 3.77
4885 17672 0.397941 TCATAGCCCTGCTGCCATAC 59.602 55.000 0.00 0.00 40.10 2.39
5097 18051 3.643763 ACAGACAGAGAAATCGTGTGAC 58.356 45.455 0.00 0.00 0.00 3.67
5200 18159 7.044798 GCCTACAGAGAAGATTACACTTGATT 58.955 38.462 0.00 0.00 0.00 2.57
5244 18203 0.249868 TGGACGAGGTGAAACTGCAG 60.250 55.000 13.48 13.48 36.74 4.41
5304 18263 2.031333 GCTCAGAAACAGCAAGTCCAAG 60.031 50.000 0.00 0.00 36.82 3.61
5490 18453 2.159142 GGTTGTGGAGTGGAGTATACCG 60.159 54.545 0.00 0.00 0.00 4.02
5493 18456 2.025605 TGTGGAGTGGAGTATACCGACT 60.026 50.000 0.00 4.19 0.00 4.18
5573 18598 6.600882 ACTTTATCTCGAGTCAAACCCTTA 57.399 37.500 13.13 0.00 0.00 2.69
5683 18713 5.402867 GGTCGAACTTAAGAGAGTTTGTCTG 59.597 44.000 10.09 0.00 39.84 3.51
5729 18766 9.339850 CTATAAACTGAAGAGTAGCAGGTAGTA 57.660 37.037 0.00 0.00 36.47 1.82
5736 18773 7.519057 TGAAGAGTAGCAGGTAGTATCATACT 58.481 38.462 2.09 2.09 42.68 2.12
5737 18774 7.999545 TGAAGAGTAGCAGGTAGTATCATACTT 59.000 37.037 1.69 0.00 40.14 2.24
5995 22102 6.238076 GCAATGTAACTTGGAAAACTTGGTTG 60.238 38.462 0.00 0.00 0.00 3.77
6018 22125 2.608752 GCTGGTCAAGGCAAACATCTTG 60.609 50.000 0.00 0.00 41.06 3.02
6254 22374 2.173569 ACCAATCTCCAGGATTAGGCAC 59.826 50.000 0.00 0.00 42.20 5.01
6315 22436 3.504863 TCGCGGTAGATTGTAACTTGAC 58.495 45.455 6.13 0.00 0.00 3.18
6316 22437 2.278094 CGCGGTAGATTGTAACTTGACG 59.722 50.000 0.00 0.00 0.00 4.35
6317 22438 2.028883 GCGGTAGATTGTAACTTGACGC 59.971 50.000 0.00 0.00 36.46 5.19
6343 22464 3.006110 ACCAAACCAAAGAGCATCACATG 59.994 43.478 0.00 0.00 37.82 3.21
6382 22545 5.484715 CAAGCACAAATCTGAATTCCCATT 58.515 37.500 2.27 0.00 0.00 3.16
6383 22546 5.334724 AGCACAAATCTGAATTCCCATTC 57.665 39.130 2.27 0.00 39.58 2.67
6386 22549 5.105635 GCACAAATCTGAATTCCCATTCTCA 60.106 40.000 2.27 0.00 39.81 3.27
6396 22559 0.466189 CCCATTCTCACCCAATCCCG 60.466 60.000 0.00 0.00 0.00 5.14
6400 22563 0.323629 TTCTCACCCAATCCCGTGAC 59.676 55.000 0.00 0.00 35.25 3.67
6402 22565 2.167398 CTCACCCAATCCCGTGACGT 62.167 60.000 3.64 0.00 35.25 4.34
6403 22566 1.740296 CACCCAATCCCGTGACGTC 60.740 63.158 9.11 9.11 31.36 4.34
6406 22569 2.660206 CAATCCCGTGACGTCCCA 59.340 61.111 14.12 0.00 0.00 4.37
6407 22570 1.004320 CAATCCCGTGACGTCCCAA 60.004 57.895 14.12 0.00 0.00 4.12
6408 22571 1.019278 CAATCCCGTGACGTCCCAAG 61.019 60.000 14.12 0.00 0.00 3.61
6409 22572 2.798148 AATCCCGTGACGTCCCAAGC 62.798 60.000 14.12 0.00 0.00 4.01
6411 22574 3.041940 CCGTGACGTCCCAAGCAC 61.042 66.667 14.12 2.71 0.00 4.40
6412 22575 2.279851 CGTGACGTCCCAAGCACA 60.280 61.111 14.12 0.00 0.00 4.57
6415 22578 0.951558 GTGACGTCCCAAGCACAAAT 59.048 50.000 14.12 0.00 0.00 2.32
6416 22579 1.069227 GTGACGTCCCAAGCACAAATC 60.069 52.381 14.12 0.00 0.00 2.17
6417 22580 1.202758 TGACGTCCCAAGCACAAATCT 60.203 47.619 14.12 0.00 0.00 2.40
6419 22582 1.202758 ACGTCCCAAGCACAAATCTGA 60.203 47.619 0.00 0.00 0.00 3.27
6420 22583 1.879380 CGTCCCAAGCACAAATCTGAA 59.121 47.619 0.00 0.00 0.00 3.02
6421 22584 2.489329 CGTCCCAAGCACAAATCTGAAT 59.511 45.455 0.00 0.00 0.00 2.57
6423 22586 4.488879 GTCCCAAGCACAAATCTGAATTC 58.511 43.478 0.00 0.00 0.00 2.17
6424 22587 3.511146 TCCCAAGCACAAATCTGAATTCC 59.489 43.478 2.27 0.00 0.00 3.01
6425 22588 3.368739 CCCAAGCACAAATCTGAATTCCC 60.369 47.826 2.27 0.00 0.00 3.97
6426 22589 3.258872 CCAAGCACAAATCTGAATTCCCA 59.741 43.478 2.27 0.00 0.00 4.37
6428 22591 4.730949 AGCACAAATCTGAATTCCCATG 57.269 40.909 2.27 0.00 0.00 3.66
6429 22592 4.346730 AGCACAAATCTGAATTCCCATGA 58.653 39.130 2.27 0.00 0.00 3.07
6430 22593 4.960469 AGCACAAATCTGAATTCCCATGAT 59.040 37.500 2.27 0.00 0.00 2.45
6432 22595 5.163488 GCACAAATCTGAATTCCCATGATCA 60.163 40.000 0.00 0.00 0.00 2.92
6433 22596 6.504398 CACAAATCTGAATTCCCATGATCAG 58.496 40.000 0.09 0.43 40.46 2.90
6434 22597 6.096423 CACAAATCTGAATTCCCATGATCAGT 59.904 38.462 0.09 2.41 40.11 3.41
6436 22599 6.956202 AATCTGAATTCCCATGATCAGTTC 57.044 37.500 0.09 0.00 40.11 3.01
6437 22600 5.705397 TCTGAATTCCCATGATCAGTTCT 57.295 39.130 0.09 0.00 40.11 3.01
6447 22649 3.827008 TGATCAGTTCTCTGTATGCCC 57.173 47.619 0.00 0.00 41.91 5.36
6460 22662 0.833834 TATGCCCTCTCTGCCTAGGC 60.834 60.000 27.71 27.71 44.13 3.93
6827 25593 8.783093 CACACATTTTAAAGATGGAGTCAGTAA 58.217 33.333 12.13 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.470664 TGGGAGCTTTCATTAAAATGGCAT 59.529 37.500 0.00 0.00 37.03 4.40
25 26 9.478768 GTATACTATTTCTTGCTAGAGGAAACC 57.521 37.037 0.00 0.00 32.84 3.27
72 73 6.071221 TGTGGGCGAGTAAAAAGAAGAGTATA 60.071 38.462 0.00 0.00 0.00 1.47
74 75 4.039488 TGTGGGCGAGTAAAAAGAAGAGTA 59.961 41.667 0.00 0.00 0.00 2.59
75 76 3.181458 TGTGGGCGAGTAAAAAGAAGAGT 60.181 43.478 0.00 0.00 0.00 3.24
76 77 3.399330 TGTGGGCGAGTAAAAAGAAGAG 58.601 45.455 0.00 0.00 0.00 2.85
77 78 3.478857 TGTGGGCGAGTAAAAAGAAGA 57.521 42.857 0.00 0.00 0.00 2.87
81 86 2.616842 ACAGTTGTGGGCGAGTAAAAAG 59.383 45.455 0.00 0.00 0.00 2.27
90 96 7.810759 ACTTTTTATTATTTACAGTTGTGGGCG 59.189 33.333 0.00 0.00 0.00 6.13
150 157 6.919662 ACAATTAGTGATTTGCAGACACAAAG 59.080 34.615 17.48 10.99 42.45 2.77
155 162 6.631971 TGAACAATTAGTGATTTGCAGACA 57.368 33.333 0.00 0.00 0.00 3.41
157 164 7.884257 TCAATGAACAATTAGTGATTTGCAGA 58.116 30.769 0.00 0.00 0.00 4.26
176 183 7.328249 GTCTGAAAGTTTGTTTGTGTTCAATGA 59.672 33.333 0.00 0.00 31.87 2.57
217 227 6.543831 ACTGCATAGGAAATGATTAGTTGTCC 59.456 38.462 0.00 0.00 0.00 4.02
219 229 8.267894 AGTACTGCATAGGAAATGATTAGTTGT 58.732 33.333 0.00 0.00 0.00 3.32
220 230 8.668510 AGTACTGCATAGGAAATGATTAGTTG 57.331 34.615 0.00 0.00 0.00 3.16
226 236 7.341805 ACTTTGAGTACTGCATAGGAAATGAT 58.658 34.615 0.00 0.00 0.00 2.45
268 284 2.432628 GACTCCGACGCAACCTGG 60.433 66.667 0.00 0.00 0.00 4.45
280 296 5.613358 AAGAAAAATGACACATCGACTCC 57.387 39.130 0.00 0.00 0.00 3.85
281 297 6.575201 GTCAAAGAAAAATGACACATCGACTC 59.425 38.462 0.00 0.00 44.19 3.36
282 298 6.430451 GTCAAAGAAAAATGACACATCGACT 58.570 36.000 0.00 0.00 44.19 4.18
285 301 5.439828 TCGTCAAAGAAAAATGACACATCG 58.560 37.500 6.70 0.00 44.84 3.84
287 303 7.032580 TGTTTCGTCAAAGAAAAATGACACAT 58.967 30.769 6.70 0.00 44.84 3.21
288 304 6.382608 TGTTTCGTCAAAGAAAAATGACACA 58.617 32.000 6.70 1.24 44.84 3.72
294 310 6.253512 GTGAGCTTGTTTCGTCAAAGAAAAAT 59.746 34.615 0.00 0.00 41.18 1.82
298 314 3.064820 GGTGAGCTTGTTTCGTCAAAGAA 59.935 43.478 0.00 0.00 0.00 2.52
305 321 1.400494 GTGTTGGTGAGCTTGTTTCGT 59.600 47.619 0.00 0.00 0.00 3.85
306 322 1.400142 TGTGTTGGTGAGCTTGTTTCG 59.600 47.619 0.00 0.00 0.00 3.46
315 331 3.194005 ACTACCACTTGTGTTGGTGAG 57.806 47.619 4.23 1.49 37.16 3.51
320 336 5.815740 ACTCTTTGTACTACCACTTGTGTTG 59.184 40.000 0.00 0.00 0.00 3.33
323 339 4.750098 CCACTCTTTGTACTACCACTTGTG 59.250 45.833 0.00 0.00 0.00 3.33
331 347 4.091509 CGTCAATGCCACTCTTTGTACTAC 59.908 45.833 0.00 0.00 33.15 2.73
332 348 4.242475 CGTCAATGCCACTCTTTGTACTA 58.758 43.478 0.00 0.00 33.15 1.82
334 350 2.412847 GCGTCAATGCCACTCTTTGTAC 60.413 50.000 0.00 0.00 33.15 2.90
353 369 2.588596 TGTGAGTGCAGTGTGGCG 60.589 61.111 0.00 0.00 36.28 5.69
362 378 1.335324 GGAACTTGCATGTGTGAGTGC 60.335 52.381 5.94 0.00 41.61 4.40
364 380 2.224606 CAGGAACTTGCATGTGTGAGT 58.775 47.619 5.94 0.00 34.60 3.41
365 381 2.224606 ACAGGAACTTGCATGTGTGAG 58.775 47.619 5.94 0.66 34.60 3.51
366 382 2.346766 ACAGGAACTTGCATGTGTGA 57.653 45.000 5.94 0.00 34.60 3.58
369 385 1.603678 GGCAACAGGAACTTGCATGTG 60.604 52.381 5.94 0.00 44.96 3.21
370 386 0.675633 GGCAACAGGAACTTGCATGT 59.324 50.000 0.00 0.00 44.96 3.21
371 387 0.963962 AGGCAACAGGAACTTGCATG 59.036 50.000 5.56 0.00 44.96 4.06
377 393 1.544314 GCTTGAGAGGCAACAGGAACT 60.544 52.381 0.00 0.00 41.41 3.01
415 431 0.452784 CGTTTGCTTAGCAGAACCGC 60.453 55.000 18.83 1.42 40.61 5.68
418 434 3.060602 AGTCTCGTTTGCTTAGCAGAAC 58.939 45.455 7.08 13.20 40.61 3.01
451 467 4.221482 AGGGAACATTCCTTTTCTCATTGC 59.779 41.667 10.45 0.00 46.72 3.56
454 470 5.261040 TGAGGGAACATTCCTTTTCTCAT 57.739 39.130 10.45 0.00 46.72 2.90
463 479 2.716217 CTCACCTTGAGGGAACATTCC 58.284 52.381 1.70 1.70 46.82 3.01
473 489 1.669115 CCACGCACCTCACCTTGAG 60.669 63.158 0.00 0.00 43.91 3.02
489 505 0.813610 CTCTCGTTGCCACAACACCA 60.814 55.000 10.74 0.00 0.00 4.17
524 541 6.309389 ACCAAGGGTACTATTTAAGACAGG 57.691 41.667 0.00 0.00 32.11 4.00
538 555 1.619432 CCACGGGTAGTACCAAGGGTA 60.619 57.143 20.97 0.00 41.02 3.69
540 557 0.906282 ACCACGGGTAGTACCAAGGG 60.906 60.000 20.97 18.46 41.02 3.95
542 559 0.971386 ACACCACGGGTAGTACCAAG 59.029 55.000 20.97 15.62 41.02 3.61
543 560 1.070445 CAACACCACGGGTAGTACCAA 59.930 52.381 20.97 0.00 41.02 3.67
544 561 0.680618 CAACACCACGGGTAGTACCA 59.319 55.000 20.97 0.00 41.02 3.25
545 562 0.681175 ACAACACCACGGGTAGTACC 59.319 55.000 11.20 11.20 37.60 3.34
546 563 1.606224 CCACAACACCACGGGTAGTAC 60.606 57.143 0.00 0.00 32.11 2.73
547 564 0.680618 CCACAACACCACGGGTAGTA 59.319 55.000 0.00 0.00 32.11 1.82
548 565 1.049855 TCCACAACACCACGGGTAGT 61.050 55.000 0.00 0.00 32.11 2.73
549 566 0.107081 TTCCACAACACCACGGGTAG 59.893 55.000 0.00 0.00 32.11 3.18
551 568 1.452470 GTTCCACAACACCACGGGT 60.452 57.895 0.00 0.00 35.62 5.28
552 569 2.190841 GGTTCCACAACACCACGGG 61.191 63.158 0.00 0.00 33.70 5.28
553 570 2.539338 CGGTTCCACAACACCACGG 61.539 63.158 0.00 0.00 33.70 4.94
555 572 1.001815 CAATCGGTTCCACAACACCAC 60.002 52.381 0.00 0.00 33.70 4.16
556 573 1.134068 TCAATCGGTTCCACAACACCA 60.134 47.619 0.00 0.00 33.70 4.17
557 574 1.265905 GTCAATCGGTTCCACAACACC 59.734 52.381 0.00 0.00 33.70 4.16
558 575 2.218603 AGTCAATCGGTTCCACAACAC 58.781 47.619 0.00 0.00 33.70 3.32
559 576 2.631160 AGTCAATCGGTTCCACAACA 57.369 45.000 0.00 0.00 33.70 3.33
560 577 3.660865 ACTAGTCAATCGGTTCCACAAC 58.339 45.455 0.00 0.00 0.00 3.32
561 578 4.322198 GGTACTAGTCAATCGGTTCCACAA 60.322 45.833 0.00 0.00 0.00 3.33
562 579 3.194116 GGTACTAGTCAATCGGTTCCACA 59.806 47.826 0.00 0.00 0.00 4.17
563 580 3.194116 TGGTACTAGTCAATCGGTTCCAC 59.806 47.826 0.00 0.00 0.00 4.02
564 581 3.433343 TGGTACTAGTCAATCGGTTCCA 58.567 45.455 0.00 0.00 0.00 3.53
565 582 4.430908 CTTGGTACTAGTCAATCGGTTCC 58.569 47.826 0.00 0.00 0.00 3.62
566 583 4.159135 TCCTTGGTACTAGTCAATCGGTTC 59.841 45.833 0.00 0.00 0.00 3.62
567 584 4.091549 TCCTTGGTACTAGTCAATCGGTT 58.908 43.478 0.00 0.00 0.00 4.44
568 585 3.705051 TCCTTGGTACTAGTCAATCGGT 58.295 45.455 0.00 0.00 0.00 4.69
569 586 4.430908 GTTCCTTGGTACTAGTCAATCGG 58.569 47.826 0.00 0.00 0.00 4.18
570 587 4.103357 CGTTCCTTGGTACTAGTCAATCG 58.897 47.826 0.00 0.00 0.00 3.34
571 588 4.863131 CACGTTCCTTGGTACTAGTCAATC 59.137 45.833 0.00 0.00 0.00 2.67
572 589 4.282703 ACACGTTCCTTGGTACTAGTCAAT 59.717 41.667 0.00 0.00 0.00 2.57
573 590 3.638160 ACACGTTCCTTGGTACTAGTCAA 59.362 43.478 0.00 0.00 0.00 3.18
574 591 3.225104 ACACGTTCCTTGGTACTAGTCA 58.775 45.455 0.00 0.00 0.00 3.41
575 592 3.930634 ACACGTTCCTTGGTACTAGTC 57.069 47.619 0.00 0.00 0.00 2.59
576 593 3.507622 GGTACACGTTCCTTGGTACTAGT 59.492 47.826 0.00 0.00 37.03 2.57
577 594 3.119352 GGGTACACGTTCCTTGGTACTAG 60.119 52.174 10.34 0.00 37.03 2.57
578 595 2.825532 GGGTACACGTTCCTTGGTACTA 59.174 50.000 10.34 0.00 37.03 1.82
579 596 1.620323 GGGTACACGTTCCTTGGTACT 59.380 52.381 10.34 0.00 37.03 2.73
585 602 1.134228 ACCAAGGGTACACGTTCCTT 58.866 50.000 0.00 4.10 41.15 3.36
591 608 4.641989 ACATAGTACTACCAAGGGTACACG 59.358 45.833 4.31 0.00 40.26 4.49
595 612 6.024893 ACCAAACATAGTACTACCAAGGGTA 58.975 40.000 4.31 0.00 37.09 3.69
646 664 1.132262 CGCCACGATTGCTTACCAAAT 59.868 47.619 0.00 0.00 36.92 2.32
653 671 1.080366 TACGACGCCACGATTGCTT 60.080 52.632 0.00 0.00 37.03 3.91
661 679 0.986992 GTGTACATGTACGACGCCAC 59.013 55.000 26.59 16.33 38.85 5.01
666 684 6.520792 AAAAACTGAGTGTACATGTACGAC 57.479 37.500 26.59 23.57 38.85 4.34
690 708 4.120946 AGGTGCATTAGGGTTTGGTTTA 57.879 40.909 0.00 0.00 0.00 2.01
706 724 1.614226 TGTGGGGGTAGGTAGGTGC 60.614 63.158 0.00 0.00 0.00 5.01
711 729 0.411452 TAACCGTGTGGGGGTAGGTA 59.589 55.000 0.00 0.00 41.60 3.08
714 732 1.851304 TAGTAACCGTGTGGGGGTAG 58.149 55.000 0.00 0.00 41.60 3.18
715 733 2.500910 CAATAGTAACCGTGTGGGGGTA 59.499 50.000 0.00 0.00 41.60 3.69
720 738 3.604875 AGGACAATAGTAACCGTGTGG 57.395 47.619 0.00 0.00 42.84 4.17
723 741 4.387862 GTGACAAGGACAATAGTAACCGTG 59.612 45.833 0.00 0.00 37.75 4.94
724 742 4.562143 GGTGACAAGGACAATAGTAACCGT 60.562 45.833 0.00 0.00 0.00 4.83
726 744 3.930848 CGGTGACAAGGACAATAGTAACC 59.069 47.826 0.00 0.00 33.01 2.85
727 745 3.370061 GCGGTGACAAGGACAATAGTAAC 59.630 47.826 0.00 0.00 0.00 2.50
728 746 3.007074 TGCGGTGACAAGGACAATAGTAA 59.993 43.478 0.00 0.00 0.00 2.24
729 747 2.563620 TGCGGTGACAAGGACAATAGTA 59.436 45.455 0.00 0.00 0.00 1.82
730 748 1.346395 TGCGGTGACAAGGACAATAGT 59.654 47.619 0.00 0.00 0.00 2.12
731 749 1.732259 GTGCGGTGACAAGGACAATAG 59.268 52.381 0.00 0.00 0.00 1.73
732 750 1.070914 TGTGCGGTGACAAGGACAATA 59.929 47.619 2.62 0.00 35.82 1.90
733 751 0.179032 TGTGCGGTGACAAGGACAAT 60.179 50.000 2.62 0.00 35.82 2.71
735 753 0.602638 GATGTGCGGTGACAAGGACA 60.603 55.000 7.03 7.03 42.55 4.02
738 756 3.168271 CGATGTGCGGTGACAAGG 58.832 61.111 0.00 0.00 36.03 3.61
751 1034 3.914312 GGTGTATCTCCATGTACCGATG 58.086 50.000 0.00 0.00 0.00 3.84
755 1038 1.270147 GCCGGTGTATCTCCATGTACC 60.270 57.143 1.90 0.00 0.00 3.34
757 1040 0.671796 CGCCGGTGTATCTCCATGTA 59.328 55.000 6.91 0.00 0.00 2.29
761 1044 2.767445 CGTCGCCGGTGTATCTCCA 61.767 63.158 16.01 0.00 0.00 3.86
779 1064 1.772819 ATGGGTGATGGATCGGAGCC 61.773 60.000 5.08 5.08 0.00 4.70
786 1071 1.070127 CCAGGGGATGGGTGATGGAT 61.070 60.000 0.00 0.00 46.36 3.41
797 1082 2.124085 TGTTCCGGTCCAGGGGAT 59.876 61.111 0.00 0.00 32.73 3.85
812 1097 1.456892 TCTCGGTCCACACTGGTGT 60.457 57.895 0.01 0.01 46.17 4.16
817 1102 1.202651 CCAAAAGTCTCGGTCCACACT 60.203 52.381 0.00 0.00 0.00 3.55
818 1103 1.226746 CCAAAAGTCTCGGTCCACAC 58.773 55.000 0.00 0.00 0.00 3.82
819 1104 0.834612 ACCAAAAGTCTCGGTCCACA 59.165 50.000 0.00 0.00 0.00 4.17
820 1105 2.825861 TACCAAAAGTCTCGGTCCAC 57.174 50.000 0.00 0.00 34.12 4.02
821 1106 2.901192 TGATACCAAAAGTCTCGGTCCA 59.099 45.455 0.00 0.00 34.12 4.02
822 1107 3.604875 TGATACCAAAAGTCTCGGTCC 57.395 47.619 0.00 0.00 34.12 4.46
823 1108 4.142881 GCTTTGATACCAAAAGTCTCGGTC 60.143 45.833 0.00 0.00 41.28 4.79
825 1110 3.751175 TGCTTTGATACCAAAAGTCTCGG 59.249 43.478 0.00 0.00 41.28 4.63
826 1111 5.356882 TTGCTTTGATACCAAAAGTCTCG 57.643 39.130 0.00 0.00 41.28 4.04
827 1112 7.370383 TGATTTGCTTTGATACCAAAAGTCTC 58.630 34.615 0.00 0.00 41.28 3.36
829 1114 7.653311 ACTTGATTTGCTTTGATACCAAAAGTC 59.347 33.333 0.00 0.00 41.28 3.01
830 1115 7.500141 ACTTGATTTGCTTTGATACCAAAAGT 58.500 30.769 0.00 0.00 41.28 2.66
832 1117 7.984050 TGAACTTGATTTGCTTTGATACCAAAA 59.016 29.630 0.00 0.00 41.28 2.44
840 1142 4.998671 TGGTGAACTTGATTTGCTTTGA 57.001 36.364 0.00 0.00 0.00 2.69
856 1158 1.682854 CTTCCTTTGCTTGCTTGGTGA 59.317 47.619 0.00 0.00 0.00 4.02
868 1170 6.442513 ACTCTTCTTTTGACACTTCCTTTG 57.557 37.500 0.00 0.00 0.00 2.77
870 1172 5.126779 GGACTCTTCTTTTGACACTTCCTT 58.873 41.667 0.00 0.00 0.00 3.36
871 1173 4.164221 TGGACTCTTCTTTTGACACTTCCT 59.836 41.667 0.00 0.00 0.00 3.36
872 1174 4.273724 GTGGACTCTTCTTTTGACACTTCC 59.726 45.833 0.00 0.00 0.00 3.46
874 1176 4.200092 GGTGGACTCTTCTTTTGACACTT 58.800 43.478 0.00 0.00 0.00 3.16
876 1178 3.541632 TGGTGGACTCTTCTTTTGACAC 58.458 45.455 0.00 0.00 0.00 3.67
877 1179 3.924114 TGGTGGACTCTTCTTTTGACA 57.076 42.857 0.00 0.00 0.00 3.58
878 1180 3.945285 TGTTGGTGGACTCTTCTTTTGAC 59.055 43.478 0.00 0.00 0.00 3.18
879 1181 3.945285 GTGTTGGTGGACTCTTCTTTTGA 59.055 43.478 0.00 0.00 0.00 2.69
880 1182 3.066760 GGTGTTGGTGGACTCTTCTTTTG 59.933 47.826 0.00 0.00 0.00 2.44
885 1187 2.222027 CTTGGTGTTGGTGGACTCTTC 58.778 52.381 0.00 0.00 0.00 2.87
899 1201 2.286365 TAACCTTCCCTTGCTTGGTG 57.714 50.000 0.00 0.00 0.00 4.17
900 1202 3.165071 CAATAACCTTCCCTTGCTTGGT 58.835 45.455 0.00 0.00 0.00 3.67
901 1203 3.193479 GTCAATAACCTTCCCTTGCTTGG 59.807 47.826 0.00 0.00 0.00 3.61
902 1204 3.193479 GGTCAATAACCTTCCCTTGCTTG 59.807 47.826 0.00 0.00 45.45 4.01
918 1223 2.041216 GTGTACTCCCCCAAAGGTCAAT 59.959 50.000 0.00 0.00 0.00 2.57
933 1238 2.762875 GCCGGCTAGGGGTGTACT 60.763 66.667 22.15 0.00 41.48 2.73
1077 4122 4.467107 GGAGGGGAGGAGACGGCT 62.467 72.222 0.00 0.00 0.00 5.52
1079 4124 4.862823 GGGGAGGGGAGGAGACGG 62.863 77.778 0.00 0.00 0.00 4.79
1080 4125 3.756783 AGGGGAGGGGAGGAGACG 61.757 72.222 0.00 0.00 0.00 4.18
1081 4126 2.041405 CAGGGGAGGGGAGGAGAC 60.041 72.222 0.00 0.00 0.00 3.36
1082 4127 4.095400 GCAGGGGAGGGGAGGAGA 62.095 72.222 0.00 0.00 0.00 3.71
1083 4128 4.101077 AGCAGGGGAGGGGAGGAG 62.101 72.222 0.00 0.00 0.00 3.69
1084 4129 4.095400 GAGCAGGGGAGGGGAGGA 62.095 72.222 0.00 0.00 0.00 3.71
1128 4178 1.829533 CAATCCCAATCTGCGGGGG 60.830 63.158 0.00 0.00 44.62 5.40
1129 4179 1.829533 CCAATCCCAATCTGCGGGG 60.830 63.158 0.00 0.00 44.62 5.73
1130 4180 0.182537 TACCAATCCCAATCTGCGGG 59.817 55.000 0.00 0.00 46.03 6.13
1131 4181 1.597742 CTACCAATCCCAATCTGCGG 58.402 55.000 0.00 0.00 0.00 5.69
1133 4183 2.301346 CACCTACCAATCCCAATCTGC 58.699 52.381 0.00 0.00 0.00 4.26
1167 4238 1.448540 CTCGGCAATGGAGAGCGTT 60.449 57.895 0.00 0.00 33.27 4.84
1168 4239 2.185350 CTCGGCAATGGAGAGCGT 59.815 61.111 0.00 0.00 33.27 5.07
1216 12581 0.680280 TATCTATCTCCGCCTCCGCC 60.680 60.000 0.00 0.00 0.00 6.13
1279 12659 0.546122 TCGGATTGGAGTGGATTGGG 59.454 55.000 0.00 0.00 0.00 4.12
1314 12710 2.769602 TTAAGCGGAGGAGTAGGGAT 57.230 50.000 0.00 0.00 0.00 3.85
1315 12711 2.769602 ATTAAGCGGAGGAGTAGGGA 57.230 50.000 0.00 0.00 0.00 4.20
1316 12712 4.950205 TTTATTAAGCGGAGGAGTAGGG 57.050 45.455 0.00 0.00 0.00 3.53
1317 12713 5.480205 GGATTTATTAAGCGGAGGAGTAGG 58.520 45.833 0.00 0.00 0.00 3.18
1318 12714 5.011738 TGGGATTTATTAAGCGGAGGAGTAG 59.988 44.000 0.00 0.00 0.00 2.57
1319 12715 4.903049 TGGGATTTATTAAGCGGAGGAGTA 59.097 41.667 0.00 0.00 0.00 2.59
1320 12716 3.714798 TGGGATTTATTAAGCGGAGGAGT 59.285 43.478 0.00 0.00 0.00 3.85
1386 12790 2.028930 TCTCGTTTCTTGGGAGAGAAGC 60.029 50.000 0.00 0.00 37.01 3.86
1401 12805 1.719780 GCGTCGATCTTGTTTCTCGTT 59.280 47.619 0.00 0.00 34.19 3.85
1402 12806 1.337821 GCGTCGATCTTGTTTCTCGT 58.662 50.000 0.00 0.00 34.19 4.18
1403 12807 0.291989 CGCGTCGATCTTGTTTCTCG 59.708 55.000 0.00 0.00 0.00 4.04
1404 12808 0.023858 GCGCGTCGATCTTGTTTCTC 59.976 55.000 8.43 0.00 0.00 2.87
1405 12809 1.352156 GGCGCGTCGATCTTGTTTCT 61.352 55.000 8.43 0.00 0.00 2.52
1406 12810 1.058903 GGCGCGTCGATCTTGTTTC 59.941 57.895 8.43 0.00 0.00 2.78
1407 12811 2.726691 CGGCGCGTCGATCTTGTTT 61.727 57.895 32.09 0.00 0.00 2.83
1426 12830 1.731613 GATTCGTGTGGTGCGTCGA 60.732 57.895 0.00 0.00 0.00 4.20
1499 12903 0.393673 GGGGAAGAAGAAGAGGCAGC 60.394 60.000 0.00 0.00 0.00 5.25
1500 12904 1.209261 GAGGGGAAGAAGAAGAGGCAG 59.791 57.143 0.00 0.00 0.00 4.85
1501 12905 1.280457 GAGGGGAAGAAGAAGAGGCA 58.720 55.000 0.00 0.00 0.00 4.75
1502 12906 0.544223 GGAGGGGAAGAAGAAGAGGC 59.456 60.000 0.00 0.00 0.00 4.70
1503 12907 1.208706 GGGAGGGGAAGAAGAAGAGG 58.791 60.000 0.00 0.00 0.00 3.69
1504 12908 1.208706 GGGGAGGGGAAGAAGAAGAG 58.791 60.000 0.00 0.00 0.00 2.85
1505 12909 0.800239 AGGGGAGGGGAAGAAGAAGA 59.200 55.000 0.00 0.00 0.00 2.87
1506 12910 0.915364 CAGGGGAGGGGAAGAAGAAG 59.085 60.000 0.00 0.00 0.00 2.85
1507 12911 1.208165 GCAGGGGAGGGGAAGAAGAA 61.208 60.000 0.00 0.00 0.00 2.52
1508 12912 1.616628 GCAGGGGAGGGGAAGAAGA 60.617 63.158 0.00 0.00 0.00 2.87
1509 12913 1.617839 AGCAGGGGAGGGGAAGAAG 60.618 63.158 0.00 0.00 0.00 2.85
1510 12914 1.925455 CAGCAGGGGAGGGGAAGAA 60.925 63.158 0.00 0.00 0.00 2.52
1511 12915 2.285668 CAGCAGGGGAGGGGAAGA 60.286 66.667 0.00 0.00 0.00 2.87
1512 12916 4.120755 GCAGCAGGGGAGGGGAAG 62.121 72.222 0.00 0.00 0.00 3.46
1513 12917 3.267177 TAGCAGCAGGGGAGGGGAA 62.267 63.158 0.00 0.00 0.00 3.97
1514 12918 3.694697 TAGCAGCAGGGGAGGGGA 61.695 66.667 0.00 0.00 0.00 4.81
1515 12919 3.483869 GTAGCAGCAGGGGAGGGG 61.484 72.222 0.00 0.00 0.00 4.79
1516 12920 3.483869 GGTAGCAGCAGGGGAGGG 61.484 72.222 0.00 0.00 0.00 4.30
1517 12921 3.854669 CGGTAGCAGCAGGGGAGG 61.855 72.222 0.00 0.00 0.00 4.30
1518 12922 3.077556 ACGGTAGCAGCAGGGGAG 61.078 66.667 0.00 0.00 0.00 4.30
1536 12940 1.009829 CGGCTGGATGAACTACAAGC 58.990 55.000 0.00 0.00 31.40 4.01
1539 12943 0.391130 GCACGGCTGGATGAACTACA 60.391 55.000 0.00 0.00 0.00 2.74
1540 12944 1.090052 GGCACGGCTGGATGAACTAC 61.090 60.000 0.00 0.00 0.00 2.73
1586 13044 5.413309 TCCTGTTCTTCCAAAAAGCAAAA 57.587 34.783 0.00 0.00 0.00 2.44
1597 13055 1.475930 GCAGCCCTATCCTGTTCTTCC 60.476 57.143 0.00 0.00 32.93 3.46
1645 13103 0.178975 TCCAAATTTGACTGGCCGGT 60.179 50.000 19.82 19.82 32.33 5.28
1747 13209 3.955524 TTTCAGGTTGTTCTTACCCCA 57.044 42.857 0.00 0.00 36.27 4.96
1755 13217 5.120053 CACCTTTGTTGTTTTCAGGTTGTTC 59.880 40.000 0.00 0.00 0.00 3.18
1757 13219 4.282195 TCACCTTTGTTGTTTTCAGGTTGT 59.718 37.500 0.00 0.00 0.00 3.32
2031 14464 6.265196 AGAAACAACAGTGCCAGATTCAATAA 59.735 34.615 0.00 0.00 0.00 1.40
2352 14790 1.736126 CTGCTAATATCCATGCCGCAG 59.264 52.381 0.00 0.00 37.63 5.18
2353 14791 1.611410 CCTGCTAATATCCATGCCGCA 60.611 52.381 0.00 0.00 0.00 5.69
2427 14865 9.379770 TGGTCAATATAATCAAGAGGAGTATGA 57.620 33.333 0.00 0.00 37.37 2.15
2514 15278 7.465173 CAATTCACACTTCAGAGATGATTCAG 58.535 38.462 0.00 0.00 0.00 3.02
2588 15352 3.758425 TCTAAGCCCAAGGGTTTAACAC 58.242 45.455 14.28 0.00 40.84 3.32
2629 15394 7.145985 GCAATTGCAGTTCATAGATCATTCAT 58.854 34.615 25.36 0.00 41.59 2.57
2790 15555 8.525290 AATCTTTATGTGGACCCTTTAGAATG 57.475 34.615 0.00 0.00 0.00 2.67
2801 15566 6.823689 TGAGCCTTTAGAATCTTTATGTGGAC 59.176 38.462 0.00 0.00 0.00 4.02
2802 15567 6.957631 TGAGCCTTTAGAATCTTTATGTGGA 58.042 36.000 0.00 0.00 0.00 4.02
2803 15568 7.718753 AGATGAGCCTTTAGAATCTTTATGTGG 59.281 37.037 0.00 0.00 0.00 4.17
2804 15569 8.674263 AGATGAGCCTTTAGAATCTTTATGTG 57.326 34.615 0.00 0.00 0.00 3.21
2805 15570 9.771534 GTAGATGAGCCTTTAGAATCTTTATGT 57.228 33.333 0.00 0.00 0.00 2.29
2806 15571 9.770097 TGTAGATGAGCCTTTAGAATCTTTATG 57.230 33.333 0.00 0.00 0.00 1.90
2828 15593 7.119262 CCCACCAACTCTTAAATACAGTTGTAG 59.881 40.741 9.53 2.88 43.71 2.74
2921 15686 7.392113 CAGTTCACCATAACCTTTTACACCATA 59.608 37.037 0.00 0.00 0.00 2.74
2951 15717 6.670927 GCAACATCTCGTCACAACTAAATCTC 60.671 42.308 0.00 0.00 0.00 2.75
3238 16010 2.519013 GACCTGCAAATGGAAGAACCT 58.481 47.619 0.00 0.00 39.86 3.50
3361 16134 3.733337 GAGTCAAGCTCCTTTTGTCTGA 58.267 45.455 0.00 0.00 38.27 3.27
3558 16331 1.524482 GATGGGAGCAGTCTGGACC 59.476 63.158 1.14 0.00 0.00 4.46
3694 16468 5.069516 ACTGATTTGCCACAAACTGATCTTT 59.930 36.000 0.00 0.00 0.00 2.52
3860 16634 3.190118 GCTTCTTTCATCACCAGTTGGAG 59.810 47.826 4.92 0.00 38.94 3.86
3916 16690 4.205587 GGACTTGCCAGAGATGAATCATT 58.794 43.478 0.00 0.00 36.34 2.57
4290 17071 3.838317 ACTGACTAGGAACTGCCATGTTA 59.162 43.478 0.00 0.00 41.52 2.41
4312 17093 4.216687 AGAAAACACGTTCTTTTGTGGACA 59.783 37.500 5.61 0.00 40.39 4.02
4377 17158 1.133199 AGTTGGTTCATTGAAGGGCCA 60.133 47.619 6.18 1.28 0.00 5.36
4380 17161 2.229784 GAGCAGTTGGTTCATTGAAGGG 59.770 50.000 0.00 0.00 0.00 3.95
4634 17415 6.020041 CACAAGCTTTCTTCTCTTCTTTTTGC 60.020 38.462 0.00 0.00 0.00 3.68
4779 17566 1.035139 CAGTAATGGCATTCCCCTGC 58.965 55.000 17.41 0.00 41.53 4.85
4859 17646 2.228343 GCAGCAGGGCTATGATTCATTC 59.772 50.000 4.14 0.00 36.40 2.67
4885 17672 3.615834 GCAGGGCTTTGATTCCTTTCAAG 60.616 47.826 0.00 0.00 36.97 3.02
5097 18051 5.108254 GCAGTTTTGCTTTTTGACATCTACG 60.108 40.000 0.00 0.00 46.95 3.51
5137 18092 7.332926 AGACTGTACATCTTGTTTGCTGATTAG 59.667 37.037 0.00 0.00 0.00 1.73
5200 18159 7.800155 TTGTGTTCAGATCTGTAATGTTCAA 57.200 32.000 21.92 14.87 0.00 2.69
5244 18203 0.250640 ATGATGAGCCAAGGATCGCC 60.251 55.000 0.00 0.00 32.52 5.54
5304 18263 0.606604 TAGCCTTGTTGGAGTCGTCC 59.393 55.000 0.00 0.00 44.24 4.79
5683 18713 3.773560 AGGGCATATCTACTCTGTCTCC 58.226 50.000 0.00 0.00 0.00 3.71
5892 21996 6.151985 ACCAGAGTACAAAACAACACATGAAA 59.848 34.615 0.00 0.00 0.00 2.69
5995 22102 0.675633 ATGTTTGCCTTGACCAGCAC 59.324 50.000 0.00 0.00 39.10 4.40
6018 22125 9.765795 ACATTATGATAGTAGAAAACTGGCTAC 57.234 33.333 0.00 0.00 39.39 3.58
6182 22302 7.228706 GGTTCTCAGAATTGAAACCTTAACAGA 59.771 37.037 0.00 0.00 39.17 3.41
6315 22436 1.838913 CTCTTTGGTTTGGTGTTGCG 58.161 50.000 0.00 0.00 0.00 4.85
6316 22437 1.134848 TGCTCTTTGGTTTGGTGTTGC 60.135 47.619 0.00 0.00 0.00 4.17
6317 22438 2.957491 TGCTCTTTGGTTTGGTGTTG 57.043 45.000 0.00 0.00 0.00 3.33
6382 22545 1.884075 CGTCACGGGATTGGGTGAGA 61.884 60.000 0.00 0.00 43.27 3.27
6383 22546 1.447838 CGTCACGGGATTGGGTGAG 60.448 63.158 0.00 0.00 43.27 3.51
6386 22549 2.660802 GACGTCACGGGATTGGGT 59.339 61.111 11.55 0.00 0.00 4.51
6396 22559 0.951558 ATTTGTGCTTGGGACGTCAC 59.048 50.000 18.91 15.66 0.00 3.67
6400 22563 1.522668 TCAGATTTGTGCTTGGGACG 58.477 50.000 0.00 0.00 0.00 4.79
6402 22565 3.511146 GGAATTCAGATTTGTGCTTGGGA 59.489 43.478 7.93 0.00 0.00 4.37
6403 22566 3.368739 GGGAATTCAGATTTGTGCTTGGG 60.369 47.826 7.93 0.00 0.00 4.12
6406 22569 4.773674 TCATGGGAATTCAGATTTGTGCTT 59.226 37.500 7.93 0.00 0.00 3.91
6407 22570 4.346730 TCATGGGAATTCAGATTTGTGCT 58.653 39.130 7.93 0.00 0.00 4.40
6408 22571 4.724074 TCATGGGAATTCAGATTTGTGC 57.276 40.909 7.93 0.00 0.00 4.57
6409 22572 6.096423 ACTGATCATGGGAATTCAGATTTGTG 59.904 38.462 7.93 0.00 38.25 3.33
6411 22574 6.710597 ACTGATCATGGGAATTCAGATTTG 57.289 37.500 7.93 4.99 38.25 2.32
6412 22575 7.124052 AGAACTGATCATGGGAATTCAGATTT 58.876 34.615 7.93 0.00 38.25 2.17
6415 22578 5.427806 AGAGAACTGATCATGGGAATTCAGA 59.572 40.000 7.93 0.00 38.25 3.27
6416 22579 5.527951 CAGAGAACTGATCATGGGAATTCAG 59.472 44.000 7.93 0.00 46.03 3.02
6417 22580 5.045359 ACAGAGAACTGATCATGGGAATTCA 60.045 40.000 7.93 0.00 46.03 2.57
6419 22582 5.447778 ACAGAGAACTGATCATGGGAATT 57.552 39.130 0.00 0.00 46.03 2.17
6420 22583 6.531923 CATACAGAGAACTGATCATGGGAAT 58.468 40.000 0.00 0.00 46.03 3.01
6421 22584 5.685861 GCATACAGAGAACTGATCATGGGAA 60.686 44.000 0.00 0.00 46.03 3.97
6423 22586 4.063689 GCATACAGAGAACTGATCATGGG 58.936 47.826 0.00 0.00 46.03 4.00
6424 22587 4.063689 GGCATACAGAGAACTGATCATGG 58.936 47.826 0.00 0.00 46.03 3.66
6425 22588 4.063689 GGGCATACAGAGAACTGATCATG 58.936 47.826 0.00 0.00 46.03 3.07
6426 22589 3.972638 AGGGCATACAGAGAACTGATCAT 59.027 43.478 0.00 0.00 46.03 2.45
6428 22591 3.640967 AGAGGGCATACAGAGAACTGATC 59.359 47.826 0.00 0.00 46.03 2.92
6429 22592 3.640967 GAGAGGGCATACAGAGAACTGAT 59.359 47.826 0.00 0.00 46.03 2.90
6430 22593 3.027412 GAGAGGGCATACAGAGAACTGA 58.973 50.000 0.00 0.00 46.03 3.41
6432 22595 3.030291 CAGAGAGGGCATACAGAGAACT 58.970 50.000 0.00 0.00 0.00 3.01
6433 22596 2.482839 GCAGAGAGGGCATACAGAGAAC 60.483 54.545 0.00 0.00 0.00 3.01
6434 22597 1.759445 GCAGAGAGGGCATACAGAGAA 59.241 52.381 0.00 0.00 0.00 2.87
6436 22599 0.392336 GGCAGAGAGGGCATACAGAG 59.608 60.000 0.00 0.00 0.00 3.35
6437 22600 0.031716 AGGCAGAGAGGGCATACAGA 60.032 55.000 0.00 0.00 35.46 3.41
6447 22649 0.187361 ACTAGGGCCTAGGCAGAGAG 59.813 60.000 36.98 24.80 44.11 3.20
6460 22662 3.682696 AGCCTTTTTCGGTAAACTAGGG 58.317 45.455 0.00 0.00 31.60 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.