Multiple sequence alignment - TraesCS5B01G368400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G368400 chr5B 100.000 4377 0 0 2036 6412 546812161 546807785 0.000000e+00 8083.0
1 TraesCS5B01G368400 chr5B 100.000 1861 0 0 1 1861 546814196 546812336 0.000000e+00 3437.0
2 TraesCS5B01G368400 chr5B 85.110 591 61 18 3454 4036 618775487 618776058 4.310000e-161 579.0
3 TraesCS5B01G368400 chr5B 96.269 134 4 1 1718 1850 546812130 546811997 1.080000e-52 219.0
4 TraesCS5B01G368400 chr5B 96.269 134 4 1 2067 2200 546812479 546812347 1.080000e-52 219.0
5 TraesCS5B01G368400 chr5B 95.489 133 6 0 1729 1861 546812161 546812029 5.040000e-51 213.0
6 TraesCS5B01G368400 chr5B 95.489 133 6 0 2036 2168 546812468 546812336 5.040000e-51 213.0
7 TraesCS5B01G368400 chr5B 84.328 134 20 1 102 235 546814046 546813914 5.220000e-26 130.0
8 TraesCS5B01G368400 chr5B 84.328 134 20 1 151 283 546814095 546813962 5.220000e-26 130.0
9 TraesCS5B01G368400 chr5B 97.436 39 0 1 2036 2073 546812035 546811997 1.490000e-06 65.8
10 TraesCS5B01G368400 chr5A 94.397 1999 82 10 3664 5634 565743768 565741772 0.000000e+00 3044.0
11 TraesCS5B01G368400 chr5A 94.944 890 27 8 2752 3631 565744647 565743766 0.000000e+00 1378.0
12 TraesCS5B01G368400 chr5A 96.914 713 22 0 2036 2748 565745399 565744687 0.000000e+00 1195.0
13 TraesCS5B01G368400 chr5A 83.912 634 36 23 1233 1861 565745923 565745351 4.370000e-151 545.0
14 TraesCS5B01G368400 chr5A 92.703 370 17 5 6050 6412 565731174 565730808 5.690000e-145 525.0
15 TraesCS5B01G368400 chr5A 82.726 521 43 21 766 1262 565746587 565746090 2.760000e-113 420.0
16 TraesCS5B01G368400 chr5A 82.337 368 33 14 5617 5958 565731751 565731390 2.260000e-74 291.0
17 TraesCS5B01G368400 chr5A 95.758 165 6 1 2036 2200 565745441 565745278 1.370000e-66 265.0
18 TraesCS5B01G368400 chr5A 95.152 165 7 1 2036 2200 565745483 565745320 6.380000e-65 259.0
19 TraesCS5B01G368400 chr5A 94.776 134 6 1 2067 2200 565745494 565745362 2.340000e-49 207.0
20 TraesCS5B01G368400 chr5A 93.382 136 9 0 1718 1853 565745368 565745233 1.090000e-47 202.0
21 TraesCS5B01G368400 chr5A 92.727 55 3 1 5996 6049 565731333 565731279 1.920000e-10 78.7
22 TraesCS5B01G368400 chr5D 95.684 1784 67 5 3664 5438 447875426 447873644 0.000000e+00 2859.0
23 TraesCS5B01G368400 chr5D 95.302 894 27 7 2752 3631 447876316 447875424 0.000000e+00 1404.0
24 TraesCS5B01G368400 chr5D 87.969 1147 55 20 730 1861 447878099 447877021 0.000000e+00 1277.0
25 TraesCS5B01G368400 chr5D 96.218 714 26 1 2036 2748 447877069 447876356 0.000000e+00 1168.0
26 TraesCS5B01G368400 chr5D 88.049 410 35 8 3630 4036 527389548 527389150 2.090000e-129 473.0
27 TraesCS5B01G368400 chr5D 93.333 165 10 1 2036 2200 447877111 447876948 6.420000e-60 243.0
28 TraesCS5B01G368400 chr5D 93.333 165 10 1 2036 2200 447877153 447876990 6.420000e-60 243.0
29 TraesCS5B01G368400 chr5D 93.919 148 9 0 1714 1861 447877084 447876937 2.330000e-54 224.0
30 TraesCS5B01G368400 chr5D 92.361 144 11 0 1718 1861 447877122 447876979 8.430000e-49 206.0
31 TraesCS5B01G368400 chr5D 93.382 136 9 0 1718 1853 447877038 447876903 1.090000e-47 202.0
32 TraesCS5B01G368400 chr4B 78.015 1783 298 74 3671 5413 207102091 207103819 0.000000e+00 1035.0
33 TraesCS5B01G368400 chr4D 77.803 1784 303 72 3671 5413 164881483 164883214 0.000000e+00 1014.0
34 TraesCS5B01G368400 chr4D 81.862 623 110 1 3950 4569 130571702 130571080 7.370000e-144 521.0
35 TraesCS5B01G368400 chr4A 77.697 1798 300 79 3661 5413 385772446 385774187 0.000000e+00 1005.0
36 TraesCS5B01G368400 chr4A 81.596 614 110 1 3950 4560 436383659 436384272 7.420000e-139 505.0
37 TraesCS5B01G368400 chr4A 87.198 414 35 11 3630 4036 657243322 657242920 7.580000e-124 455.0
38 TraesCS5B01G368400 chr3B 86.120 634 63 13 3613 4240 570069065 570068451 0.000000e+00 660.0
39 TraesCS5B01G368400 chr3B 92.697 178 9 3 2774 2950 570070294 570070120 2.970000e-63 254.0
40 TraesCS5B01G368400 chr3B 79.182 269 33 9 5064 5318 570068316 570068057 1.430000e-36 165.0
41 TraesCS5B01G368400 chr3B 91.597 119 7 2 2369 2486 570070664 570070548 1.850000e-35 161.0
42 TraesCS5B01G368400 chr2D 89.890 455 37 4 156 609 4410921 4410475 1.550000e-160 577.0
43 TraesCS5B01G368400 chr2D 86.143 433 38 12 3612 4036 34672894 34672476 1.270000e-121 448.0
44 TraesCS5B01G368400 chr2D 88.525 183 19 1 3431 3613 607799873 607800053 3.010000e-53 220.0
45 TraesCS5B01G368400 chr2D 81.933 238 39 4 69 304 480131511 480131276 1.410000e-46 198.0
46 TraesCS5B01G368400 chr2D 87.129 101 9 1 200 296 190368659 190368559 1.890000e-20 111.0
47 TraesCS5B01G368400 chr2D 89.394 66 7 0 611 676 4410363 4410298 4.120000e-12 84.2
48 TraesCS5B01G368400 chr6B 88.274 452 51 2 136 587 144893694 144894143 2.030000e-149 540.0
49 TraesCS5B01G368400 chrUn 81.541 623 112 1 3950 4569 55736545 55735923 1.590000e-140 510.0
50 TraesCS5B01G368400 chr7B 84.979 486 67 3 123 607 708997422 708996942 7.470000e-134 488.0
51 TraesCS5B01G368400 chr3D 86.588 425 36 12 3618 4036 423641402 423640993 3.530000e-122 449.0
52 TraesCS5B01G368400 chr3D 91.716 169 12 2 3446 3613 423641644 423641477 3.870000e-57 233.0
53 TraesCS5B01G368400 chr2A 86.408 412 40 8 3630 4036 611734762 611734362 2.750000e-118 436.0
54 TraesCS5B01G368400 chr2A 84.545 220 32 2 86 304 622456719 622456501 3.890000e-52 217.0
55 TraesCS5B01G368400 chr1B 88.623 334 33 2 279 612 136631534 136631206 1.000000e-107 401.0
56 TraesCS5B01G368400 chr1B 90.710 183 17 0 3431 3613 589517569 589517387 1.790000e-60 244.0
57 TraesCS5B01G368400 chr1B 78.075 374 50 17 241 612 131077409 131077066 2.340000e-49 207.0
58 TraesCS5B01G368400 chr1D 90.476 168 16 0 3446 3613 71617078 71616911 8.370000e-54 222.0
59 TraesCS5B01G368400 chr2B 88.525 183 20 1 3431 3613 62786644 62786825 3.010000e-53 220.0
60 TraesCS5B01G368400 chr7D 89.881 168 17 0 3446 3613 45483169 45483002 3.890000e-52 217.0
61 TraesCS5B01G368400 chr1A 89.017 173 18 1 3446 3618 513847803 513847632 5.040000e-51 213.0
62 TraesCS5B01G368400 chr6D 81.481 135 21 1 166 296 86025809 86025675 2.440000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G368400 chr5B 546807785 546814196 6411 True 1412.200000 8083 94.400889 1 6412 9 chr5B.!!$R1 6411
1 TraesCS5B01G368400 chr5B 618775487 618776058 571 False 579.000000 579 85.110000 3454 4036 1 chr5B.!!$F1 582
2 TraesCS5B01G368400 chr5A 565741772 565746587 4815 True 835.000000 3044 92.440111 766 5634 9 chr5A.!!$R2 4868
3 TraesCS5B01G368400 chr5A 565730808 565731751 943 True 298.233333 525 89.255667 5617 6412 3 chr5A.!!$R1 795
4 TraesCS5B01G368400 chr5D 447873644 447878099 4455 True 869.555556 2859 93.500111 730 5438 9 chr5D.!!$R2 4708
5 TraesCS5B01G368400 chr4B 207102091 207103819 1728 False 1035.000000 1035 78.015000 3671 5413 1 chr4B.!!$F1 1742
6 TraesCS5B01G368400 chr4D 164881483 164883214 1731 False 1014.000000 1014 77.803000 3671 5413 1 chr4D.!!$F1 1742
7 TraesCS5B01G368400 chr4D 130571080 130571702 622 True 521.000000 521 81.862000 3950 4569 1 chr4D.!!$R1 619
8 TraesCS5B01G368400 chr4A 385772446 385774187 1741 False 1005.000000 1005 77.697000 3661 5413 1 chr4A.!!$F1 1752
9 TraesCS5B01G368400 chr4A 436383659 436384272 613 False 505.000000 505 81.596000 3950 4560 1 chr4A.!!$F2 610
10 TraesCS5B01G368400 chr3B 570068057 570070664 2607 True 310.000000 660 87.399000 2369 5318 4 chr3B.!!$R1 2949
11 TraesCS5B01G368400 chr2D 4410298 4410921 623 True 330.600000 577 89.642000 156 676 2 chr2D.!!$R4 520
12 TraesCS5B01G368400 chrUn 55735923 55736545 622 True 510.000000 510 81.541000 3950 4569 1 chrUn.!!$R1 619
13 TraesCS5B01G368400 chr3D 423640993 423641644 651 True 341.000000 449 89.152000 3446 4036 2 chr3D.!!$R1 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 162 0.035820 GCGGTATTGTGACTTGGGGA 60.036 55.0 0.00 0.0 0.00 4.81 F
1819 2046 0.037882 CGTGATGGGATCAGGGATCG 60.038 60.0 0.00 0.0 40.53 3.69 F
1860 2087 0.179936 CAGTGAAGGGAGCAGGGATC 59.820 60.0 0.00 0.0 0.00 3.36 F
3366 3662 0.621609 GCAACCCCAGGTATGTGGTA 59.378 55.0 0.00 0.0 35.96 3.25 F
5017 5858 0.177373 CAGTCGGGCCTAACCTTACC 59.823 60.0 0.84 0.0 39.10 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1841 2068 0.179936 GATCCCTGCTCCCTTCACTG 59.820 60.000 0.0 0.0 0.00 3.66 R
3164 3453 0.321671 GGCAAGACTAGACACCTGCA 59.678 55.000 0.0 0.0 0.00 4.41 R
3819 4625 0.249031 CATAGACACGCCGAGCATGA 60.249 55.000 0.0 0.0 0.00 3.07 R
5361 6218 0.540365 TTCTCGGGGTAGAACACGGT 60.540 55.000 0.0 0.0 30.54 4.83 R
5978 6904 1.341285 CCTGGTCCCATTCAAGCATCA 60.341 52.381 0.0 0.0 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.832608 CTAGCCGCAACCCCGACC 62.833 72.222 0.00 0.00 0.00 4.79
32 33 4.939368 CGCAACCCCGACCCACAA 62.939 66.667 0.00 0.00 0.00 3.33
33 34 2.983592 GCAACCCCGACCCACAAG 60.984 66.667 0.00 0.00 0.00 3.16
34 35 2.513895 CAACCCCGACCCACAAGT 59.486 61.111 0.00 0.00 0.00 3.16
35 36 1.599797 CAACCCCGACCCACAAGTC 60.600 63.158 0.00 0.00 0.00 3.01
41 42 3.045142 GACCCACAAGTCGACGGA 58.955 61.111 10.46 0.00 0.00 4.69
42 43 1.364901 GACCCACAAGTCGACGGAA 59.635 57.895 10.46 0.00 0.00 4.30
43 44 0.666577 GACCCACAAGTCGACGGAAG 60.667 60.000 10.46 4.04 0.00 3.46
44 45 2.027625 CCCACAAGTCGACGGAAGC 61.028 63.158 10.46 0.00 0.00 3.86
45 46 1.300620 CCACAAGTCGACGGAAGCA 60.301 57.895 10.46 0.00 0.00 3.91
46 47 0.670546 CCACAAGTCGACGGAAGCAT 60.671 55.000 10.46 0.00 0.00 3.79
47 48 0.716108 CACAAGTCGACGGAAGCATC 59.284 55.000 10.46 0.00 0.00 3.91
48 49 0.317160 ACAAGTCGACGGAAGCATCA 59.683 50.000 10.46 0.00 0.00 3.07
49 50 0.994995 CAAGTCGACGGAAGCATCAG 59.005 55.000 10.46 0.00 0.00 2.90
50 51 0.737715 AAGTCGACGGAAGCATCAGC 60.738 55.000 10.46 0.00 42.56 4.26
51 52 2.167861 GTCGACGGAAGCATCAGCC 61.168 63.158 0.00 0.00 43.56 4.85
52 53 2.892425 CGACGGAAGCATCAGCCC 60.892 66.667 0.00 0.00 43.56 5.19
53 54 2.514824 GACGGAAGCATCAGCCCC 60.515 66.667 0.00 0.00 43.56 5.80
54 55 3.329542 GACGGAAGCATCAGCCCCA 62.330 63.158 0.00 0.00 43.56 4.96
55 56 2.825836 CGGAAGCATCAGCCCCAC 60.826 66.667 0.00 0.00 43.56 4.61
56 57 2.356278 GGAAGCATCAGCCCCACA 59.644 61.111 0.00 0.00 43.56 4.17
57 58 1.304381 GGAAGCATCAGCCCCACAA 60.304 57.895 0.00 0.00 43.56 3.33
58 59 0.899717 GGAAGCATCAGCCCCACAAA 60.900 55.000 0.00 0.00 43.56 2.83
59 60 0.968405 GAAGCATCAGCCCCACAAAA 59.032 50.000 0.00 0.00 43.56 2.44
60 61 0.681175 AAGCATCAGCCCCACAAAAC 59.319 50.000 0.00 0.00 43.56 2.43
61 62 0.178953 AGCATCAGCCCCACAAAACT 60.179 50.000 0.00 0.00 43.56 2.66
62 63 1.075374 AGCATCAGCCCCACAAAACTA 59.925 47.619 0.00 0.00 43.56 2.24
63 64 1.202348 GCATCAGCCCCACAAAACTAC 59.798 52.381 0.00 0.00 33.58 2.73
64 65 2.513753 CATCAGCCCCACAAAACTACA 58.486 47.619 0.00 0.00 0.00 2.74
65 66 2.969821 TCAGCCCCACAAAACTACAT 57.030 45.000 0.00 0.00 0.00 2.29
66 67 4.269183 CATCAGCCCCACAAAACTACATA 58.731 43.478 0.00 0.00 0.00 2.29
67 68 4.374689 TCAGCCCCACAAAACTACATAA 57.625 40.909 0.00 0.00 0.00 1.90
68 69 4.331968 TCAGCCCCACAAAACTACATAAG 58.668 43.478 0.00 0.00 0.00 1.73
69 70 4.079253 CAGCCCCACAAAACTACATAAGT 58.921 43.478 0.00 0.00 41.49 2.24
70 71 4.079253 AGCCCCACAAAACTACATAAGTG 58.921 43.478 0.00 0.00 38.88 3.16
71 72 4.076394 GCCCCACAAAACTACATAAGTGA 58.924 43.478 0.00 0.00 38.88 3.41
72 73 4.082949 GCCCCACAAAACTACATAAGTGAC 60.083 45.833 0.00 0.00 38.88 3.67
73 74 4.457949 CCCCACAAAACTACATAAGTGACC 59.542 45.833 0.00 0.00 38.88 4.02
74 75 4.153475 CCCACAAAACTACATAAGTGACCG 59.847 45.833 0.00 0.00 38.88 4.79
75 76 4.753107 CCACAAAACTACATAAGTGACCGT 59.247 41.667 0.00 0.00 38.88 4.83
76 77 5.333798 CCACAAAACTACATAAGTGACCGTG 60.334 44.000 0.00 0.00 38.88 4.94
77 78 4.753107 ACAAAACTACATAAGTGACCGTGG 59.247 41.667 0.00 0.00 38.88 4.94
78 79 3.604875 AACTACATAAGTGACCGTGGG 57.395 47.619 0.00 0.00 38.88 4.61
79 80 1.829222 ACTACATAAGTGACCGTGGGG 59.171 52.381 0.00 0.00 36.93 4.96
80 81 2.104967 CTACATAAGTGACCGTGGGGA 58.895 52.381 0.00 0.00 36.97 4.81
81 82 0.611714 ACATAAGTGACCGTGGGGAC 59.388 55.000 0.00 0.00 36.97 4.46
82 83 0.459585 CATAAGTGACCGTGGGGACG 60.460 60.000 0.00 0.00 36.97 4.79
83 84 0.612732 ATAAGTGACCGTGGGGACGA 60.613 55.000 0.00 0.00 36.97 4.20
84 85 0.612732 TAAGTGACCGTGGGGACGAT 60.613 55.000 0.00 0.00 36.97 3.73
85 86 2.125673 GTGACCGTGGGGACGATG 60.126 66.667 0.00 0.00 36.97 3.84
86 87 3.387091 TGACCGTGGGGACGATGG 61.387 66.667 0.00 0.00 36.97 3.51
87 88 4.157120 GACCGTGGGGACGATGGG 62.157 72.222 0.00 0.00 36.97 4.00
90 91 4.175337 CGTGGGGACGATGGGCAT 62.175 66.667 0.00 0.00 34.64 4.40
91 92 2.516930 GTGGGGACGATGGGCATG 60.517 66.667 0.00 0.00 0.00 4.06
92 93 3.807839 TGGGGACGATGGGCATGG 61.808 66.667 0.00 0.00 0.00 3.66
93 94 4.586235 GGGGACGATGGGCATGGG 62.586 72.222 0.00 0.00 0.00 4.00
94 95 3.809013 GGGACGATGGGCATGGGT 61.809 66.667 0.00 0.00 0.00 4.51
95 96 2.516930 GGACGATGGGCATGGGTG 60.517 66.667 0.00 0.00 0.00 4.61
96 97 2.516930 GACGATGGGCATGGGTGG 60.517 66.667 0.00 0.00 0.00 4.61
106 107 4.344865 ATGGGTGGCACCGTGACC 62.345 66.667 29.18 16.01 39.83 4.02
122 123 4.489771 CCTGGGGGCACGGTCATC 62.490 72.222 0.00 0.00 0.00 2.92
123 124 4.838152 CTGGGGGCACGGTCATCG 62.838 72.222 0.00 0.00 45.88 3.84
132 133 2.896854 CGGTCATCGTGGGCATGG 60.897 66.667 0.00 0.00 0.00 3.66
133 134 3.211963 GGTCATCGTGGGCATGGC 61.212 66.667 11.56 11.56 0.00 4.40
152 153 3.196648 GGCTTGGGCGGTATTGTG 58.803 61.111 0.00 0.00 39.81 3.33
153 154 1.377987 GGCTTGGGCGGTATTGTGA 60.378 57.895 0.00 0.00 39.81 3.58
154 155 1.654023 GGCTTGGGCGGTATTGTGAC 61.654 60.000 0.00 0.00 39.81 3.67
161 162 0.035820 GCGGTATTGTGACTTGGGGA 60.036 55.000 0.00 0.00 0.00 4.81
169 170 2.266055 GACTTGGGGAGCGGTGAG 59.734 66.667 0.00 0.00 0.00 3.51
203 204 0.676782 GCTTGGGCGGTATTGTGACT 60.677 55.000 0.00 0.00 0.00 3.41
217 218 2.047179 GACTTGGGGAGCGGTGAC 60.047 66.667 0.00 0.00 0.00 3.67
218 219 3.607370 GACTTGGGGAGCGGTGACC 62.607 68.421 0.00 0.00 0.00 4.02
265 266 0.319297 GTGACCTACGGTGTGGTGAC 60.319 60.000 11.44 9.81 35.25 3.67
306 307 3.622459 GGCATTGTGGCATCGTAAC 57.378 52.632 0.00 0.00 43.14 2.50
317 318 2.084546 GCATCGTAACCAAGGAAAGCT 58.915 47.619 0.00 0.00 0.00 3.74
334 335 4.966787 TTGGTGCCAACGAGCCCC 62.967 66.667 0.00 0.00 0.00 5.80
347 348 3.998672 GCCCCGACTGGACGAACA 61.999 66.667 0.00 0.00 37.49 3.18
354 355 0.247736 GACTGGACGAACATGCTCCT 59.752 55.000 0.00 0.00 0.00 3.69
362 363 3.282745 AACATGCTCCTCGACGCGT 62.283 57.895 13.85 13.85 0.00 6.01
406 407 1.400242 GCAGTGAGCAACGAAACCATC 60.400 52.381 0.00 0.00 44.79 3.51
419 420 3.055719 CCATCGCCGCTGTTTGGT 61.056 61.111 0.00 0.00 0.00 3.67
451 453 7.388224 CCTTAACTTCTCCACTTTTAAGTCTCC 59.612 40.741 0.00 0.00 37.08 3.71
461 463 2.579410 TTAAGTCTCCCCTTGTTGCC 57.421 50.000 0.00 0.00 0.00 4.52
473 475 2.963320 GTTGCCGTCCGTCGTGTT 60.963 61.111 0.00 0.00 37.94 3.32
508 510 3.620300 CTCTGCCGACGCCGTACAA 62.620 63.158 0.00 0.00 0.00 2.41
516 518 1.149987 GACGCCGTACAACCATTGAA 58.850 50.000 0.00 0.00 0.00 2.69
602 604 4.082523 CGGCGGGCAAGAAGAGGA 62.083 66.667 0.00 0.00 0.00 3.71
609 611 0.670854 GGCAAGAAGAGGACGTCCAC 60.671 60.000 35.00 28.95 38.89 4.02
610 612 0.670854 GCAAGAAGAGGACGTCCACC 60.671 60.000 35.00 25.04 38.89 4.61
612 614 1.070134 CAAGAAGAGGACGTCCACCAA 59.930 52.381 35.00 0.00 38.89 3.67
614 616 1.344763 AGAAGAGGACGTCCACCAAAG 59.655 52.381 35.00 0.00 38.89 2.77
615 617 1.070289 GAAGAGGACGTCCACCAAAGT 59.930 52.381 35.00 13.86 38.89 2.66
616 618 1.129058 AGAGGACGTCCACCAAAGTT 58.871 50.000 35.00 13.05 38.89 2.66
618 620 1.871676 GAGGACGTCCACCAAAGTTTC 59.128 52.381 35.00 17.13 38.89 2.78
619 621 0.584876 GGACGTCCACCAAAGTTTCG 59.415 55.000 29.75 0.00 35.64 3.46
620 622 1.574134 GACGTCCACCAAAGTTTCGA 58.426 50.000 3.51 0.00 0.00 3.71
621 623 2.140717 GACGTCCACCAAAGTTTCGAT 58.859 47.619 3.51 0.00 0.00 3.59
622 624 1.871039 ACGTCCACCAAAGTTTCGATG 59.129 47.619 0.00 0.00 0.00 3.84
623 625 1.871039 CGTCCACCAAAGTTTCGATGT 59.129 47.619 0.00 0.00 0.00 3.06
624 626 3.061322 CGTCCACCAAAGTTTCGATGTA 58.939 45.455 0.00 0.00 0.00 2.29
625 627 3.122948 CGTCCACCAAAGTTTCGATGTAG 59.877 47.826 0.00 0.00 0.00 2.74
626 628 3.435671 GTCCACCAAAGTTTCGATGTAGG 59.564 47.826 0.00 0.00 0.00 3.18
627 629 3.325425 TCCACCAAAGTTTCGATGTAGGA 59.675 43.478 0.00 0.00 0.00 2.94
628 630 4.019681 TCCACCAAAGTTTCGATGTAGGAT 60.020 41.667 0.00 0.00 0.00 3.24
630 632 5.391950 CCACCAAAGTTTCGATGTAGGATTG 60.392 44.000 0.00 0.00 0.00 2.67
631 633 4.700213 ACCAAAGTTTCGATGTAGGATTGG 59.300 41.667 0.00 0.00 40.39 3.16
632 634 4.700213 CCAAAGTTTCGATGTAGGATTGGT 59.300 41.667 0.00 0.00 32.21 3.67
633 635 5.183140 CCAAAGTTTCGATGTAGGATTGGTT 59.817 40.000 0.00 0.00 32.21 3.67
634 636 5.880054 AAGTTTCGATGTAGGATTGGTTG 57.120 39.130 0.00 0.00 0.00 3.77
637 639 4.545208 TTCGATGTAGGATTGGTTGTCA 57.455 40.909 0.00 0.00 0.00 3.58
638 640 4.123497 TCGATGTAGGATTGGTTGTCAG 57.877 45.455 0.00 0.00 0.00 3.51
640 642 3.679917 CGATGTAGGATTGGTTGTCAGCT 60.680 47.826 0.00 0.00 0.00 4.24
641 643 3.788227 TGTAGGATTGGTTGTCAGCTT 57.212 42.857 0.00 0.00 0.00 3.74
642 644 3.411446 TGTAGGATTGGTTGTCAGCTTG 58.589 45.455 0.00 0.00 0.00 4.01
645 647 1.615392 GGATTGGTTGTCAGCTTGCTT 59.385 47.619 0.00 0.00 0.00 3.91
647 649 0.746063 TTGGTTGTCAGCTTGCTTGG 59.254 50.000 0.00 0.00 0.00 3.61
648 650 0.395586 TGGTTGTCAGCTTGCTTGGT 60.396 50.000 0.00 0.00 0.00 3.67
650 652 0.595825 GTTGTCAGCTTGCTTGGTGC 60.596 55.000 0.00 0.00 43.25 5.01
659 661 2.105984 TGCTTGGTGCAGACAACAC 58.894 52.632 0.00 0.00 45.23 3.32
661 663 1.436195 GCTTGGTGCAGACAACACGA 61.436 55.000 0.00 0.00 45.23 4.35
662 664 1.013596 CTTGGTGCAGACAACACGAA 58.986 50.000 0.00 0.00 45.23 3.85
663 665 1.603802 CTTGGTGCAGACAACACGAAT 59.396 47.619 0.00 0.00 45.23 3.34
665 667 1.225855 GGTGCAGACAACACGAATGA 58.774 50.000 0.00 0.00 38.98 2.57
667 669 3.000041 GGTGCAGACAACACGAATGATA 59.000 45.455 0.00 0.00 38.98 2.15
668 670 3.181520 GGTGCAGACAACACGAATGATAC 60.182 47.826 0.00 0.00 38.98 2.24
669 671 3.431912 GTGCAGACAACACGAATGATACA 59.568 43.478 0.00 0.00 0.00 2.29
670 672 4.093408 GTGCAGACAACACGAATGATACAT 59.907 41.667 0.00 0.00 0.00 2.29
671 673 4.093261 TGCAGACAACACGAATGATACATG 59.907 41.667 0.00 0.00 0.00 3.21
672 674 4.581493 CAGACAACACGAATGATACATGC 58.419 43.478 0.00 0.00 0.00 4.06
673 675 4.093261 CAGACAACACGAATGATACATGCA 59.907 41.667 0.00 0.00 0.00 3.96
674 676 4.877823 AGACAACACGAATGATACATGCAT 59.122 37.500 0.00 0.00 0.00 3.96
675 677 6.018832 CAGACAACACGAATGATACATGCATA 60.019 38.462 0.00 0.00 0.00 3.14
676 678 6.201615 AGACAACACGAATGATACATGCATAG 59.798 38.462 0.00 0.00 0.00 2.23
677 679 5.237127 ACAACACGAATGATACATGCATAGG 59.763 40.000 0.00 0.00 0.00 2.57
678 680 4.960938 ACACGAATGATACATGCATAGGT 58.039 39.130 0.00 0.00 0.00 3.08
679 681 4.751600 ACACGAATGATACATGCATAGGTG 59.248 41.667 0.00 3.59 36.22 4.00
680 682 4.990426 CACGAATGATACATGCATAGGTGA 59.010 41.667 0.00 0.00 34.03 4.02
681 683 5.466393 CACGAATGATACATGCATAGGTGAA 59.534 40.000 0.00 0.00 34.03 3.18
682 684 6.148315 CACGAATGATACATGCATAGGTGAAT 59.852 38.462 0.00 0.00 34.03 2.57
683 685 6.148315 ACGAATGATACATGCATAGGTGAATG 59.852 38.462 0.00 0.00 45.47 2.67
696 698 2.316119 GTGAATGTCACGCCAGTTTC 57.684 50.000 0.00 0.00 37.67 2.78
697 699 1.873591 GTGAATGTCACGCCAGTTTCT 59.126 47.619 0.00 0.00 37.67 2.52
698 700 2.290641 GTGAATGTCACGCCAGTTTCTT 59.709 45.455 0.00 0.00 37.67 2.52
699 701 2.948979 TGAATGTCACGCCAGTTTCTTT 59.051 40.909 0.00 0.00 0.00 2.52
700 702 3.003275 TGAATGTCACGCCAGTTTCTTTC 59.997 43.478 0.00 0.00 0.00 2.62
701 703 2.031258 TGTCACGCCAGTTTCTTTCA 57.969 45.000 0.00 0.00 0.00 2.69
702 704 2.571212 TGTCACGCCAGTTTCTTTCAT 58.429 42.857 0.00 0.00 0.00 2.57
703 705 2.290367 TGTCACGCCAGTTTCTTTCATG 59.710 45.455 0.00 0.00 0.00 3.07
704 706 1.266718 TCACGCCAGTTTCTTTCATGC 59.733 47.619 0.00 0.00 0.00 4.06
705 707 0.598065 ACGCCAGTTTCTTTCATGCC 59.402 50.000 0.00 0.00 0.00 4.40
706 708 0.454957 CGCCAGTTTCTTTCATGCCG 60.455 55.000 0.00 0.00 0.00 5.69
707 709 0.733909 GCCAGTTTCTTTCATGCCGC 60.734 55.000 0.00 0.00 0.00 6.53
708 710 0.454957 CCAGTTTCTTTCATGCCGCG 60.455 55.000 0.00 0.00 0.00 6.46
709 711 0.454957 CAGTTTCTTTCATGCCGCGG 60.455 55.000 24.05 24.05 0.00 6.46
710 712 1.801512 GTTTCTTTCATGCCGCGGC 60.802 57.895 42.35 42.35 42.35 6.53
711 713 2.988688 TTTCTTTCATGCCGCGGCC 61.989 57.895 44.42 27.83 41.09 6.13
712 714 4.713735 TCTTTCATGCCGCGGCCA 62.714 61.111 44.42 32.28 41.09 5.36
713 715 4.481112 CTTTCATGCCGCGGCCAC 62.481 66.667 44.42 21.08 41.09 5.01
717 719 4.132441 CATGCCGCGGCCACATTT 62.132 61.111 44.42 20.71 41.09 2.32
718 720 3.825611 ATGCCGCGGCCACATTTC 61.826 61.111 44.42 17.88 41.09 2.17
720 722 4.049640 GCCGCGGCCACATTTCAA 62.050 61.111 39.89 0.00 34.56 2.69
721 723 2.647875 CCGCGGCCACATTTCAAA 59.352 55.556 14.67 0.00 0.00 2.69
722 724 1.006805 CCGCGGCCACATTTCAAAA 60.007 52.632 14.67 0.00 0.00 2.44
723 725 1.008361 CCGCGGCCACATTTCAAAAG 61.008 55.000 14.67 0.00 0.00 2.27
724 726 0.318614 CGCGGCCACATTTCAAAAGT 60.319 50.000 2.24 0.00 0.00 2.66
725 727 1.139163 GCGGCCACATTTCAAAAGTG 58.861 50.000 2.24 0.00 0.00 3.16
733 735 4.236935 CACATTTCAAAAGTGGAATCCCG 58.763 43.478 0.00 0.00 29.74 5.14
734 736 4.022416 CACATTTCAAAAGTGGAATCCCGA 60.022 41.667 0.00 0.00 29.74 5.14
746 748 5.126061 AGTGGAATCCCGAGAATTTGAATTG 59.874 40.000 0.00 0.00 34.29 2.32
757 759 3.658757 ATTTGAATTGGGTGTCGGTTG 57.341 42.857 0.00 0.00 0.00 3.77
758 760 2.350057 TTGAATTGGGTGTCGGTTGA 57.650 45.000 0.00 0.00 0.00 3.18
759 761 1.600023 TGAATTGGGTGTCGGTTGAC 58.400 50.000 0.00 0.00 45.71 3.18
801 803 3.548014 CCAAGTCAAAAATCAACGAGCGT 60.548 43.478 0.00 0.00 0.00 5.07
822 824 3.703127 GCCTCCGGAACCGACCTT 61.703 66.667 15.07 0.00 42.83 3.50
825 827 2.524887 TCCGGAACCGACCTTGGT 60.525 61.111 15.07 0.00 46.67 3.67
880 890 0.179145 CTATATACTTCGCCCCGCCG 60.179 60.000 0.00 0.00 0.00 6.46
889 899 4.397832 GCCCCGCCGAACCAAGTA 62.398 66.667 0.00 0.00 0.00 2.24
890 900 2.587889 CCCCGCCGAACCAAGTAT 59.412 61.111 0.00 0.00 0.00 2.12
891 901 1.824658 CCCCGCCGAACCAAGTATA 59.175 57.895 0.00 0.00 0.00 1.47
892 902 0.178533 CCCCGCCGAACCAAGTATAA 59.821 55.000 0.00 0.00 0.00 0.98
1135 1156 1.291132 GCGGCTGTCTTTATCTGTCC 58.709 55.000 0.00 0.00 0.00 4.02
1286 1512 1.756561 CCCCCAAATTAGTGCCGGG 60.757 63.158 2.18 0.00 36.59 5.73
1287 1513 1.000145 CCCCAAATTAGTGCCGGGT 60.000 57.895 2.18 0.00 34.89 5.28
1307 1533 2.287103 GTCGTGTTTTCAGTTCTGGTCC 59.713 50.000 0.00 0.00 0.00 4.46
1345 1571 1.666054 TTCGGGCGTGTTTTGTAAGT 58.334 45.000 0.00 0.00 0.00 2.24
1405 1632 1.538047 TTCCAAGTTCAGGAGCATGC 58.462 50.000 10.51 10.51 36.33 4.06
1424 1651 7.188157 AGCATGCAGTTTTTGTTTATTTTGTG 58.812 30.769 21.98 0.00 0.00 3.33
1437 1664 6.922407 TGTTTATTTTGTGATGTGTGATGTGG 59.078 34.615 0.00 0.00 0.00 4.17
1468 1695 7.709613 CAGGCTTGGTAGTTATAATTCGTAAGT 59.290 37.037 0.00 0.00 39.48 2.24
1469 1696 8.917088 AGGCTTGGTAGTTATAATTCGTAAGTA 58.083 33.333 0.00 0.00 39.48 2.24
1470 1697 8.972349 GGCTTGGTAGTTATAATTCGTAAGTAC 58.028 37.037 14.40 14.40 37.29 2.73
1501 1728 3.144506 CATACTAGCAGGCCCTGATTTG 58.855 50.000 16.85 7.55 32.44 2.32
1507 1734 3.444029 AGCAGGCCCTGATTTGTATTTT 58.556 40.909 16.85 0.00 32.44 1.82
1549 1776 4.082571 AGGAATTCATGTTCTTTTCCAGCG 60.083 41.667 7.93 0.00 38.63 5.18
1616 1843 3.532155 AGGGAGCGCGATGAGGAC 61.532 66.667 12.10 0.00 0.00 3.85
1617 1844 3.838271 GGGAGCGCGATGAGGACA 61.838 66.667 12.10 0.00 0.00 4.02
1618 1845 2.184322 GGAGCGCGATGAGGACAA 59.816 61.111 12.10 0.00 0.00 3.18
1619 1846 1.880340 GGAGCGCGATGAGGACAAG 60.880 63.158 12.10 0.00 0.00 3.16
1620 1847 1.880340 GAGCGCGATGAGGACAAGG 60.880 63.158 12.10 0.00 0.00 3.61
1621 1848 2.184322 GCGCGATGAGGACAAGGA 59.816 61.111 12.10 0.00 0.00 3.36
1622 1849 2.167861 GCGCGATGAGGACAAGGAC 61.168 63.158 12.10 0.00 0.00 3.85
1623 1850 1.215382 CGCGATGAGGACAAGGACA 59.785 57.895 0.00 0.00 0.00 4.02
1624 1851 0.803768 CGCGATGAGGACAAGGACAG 60.804 60.000 0.00 0.00 0.00 3.51
1625 1852 0.460987 GCGATGAGGACAAGGACAGG 60.461 60.000 0.00 0.00 0.00 4.00
1626 1853 0.176680 CGATGAGGACAAGGACAGGG 59.823 60.000 0.00 0.00 0.00 4.45
1627 1854 1.573108 GATGAGGACAAGGACAGGGA 58.427 55.000 0.00 0.00 0.00 4.20
1628 1855 1.484240 GATGAGGACAAGGACAGGGAG 59.516 57.143 0.00 0.00 0.00 4.30
1629 1856 1.194781 TGAGGACAAGGACAGGGAGC 61.195 60.000 0.00 0.00 0.00 4.70
1630 1857 2.232298 GAGGACAAGGACAGGGAGCG 62.232 65.000 0.00 0.00 0.00 5.03
1631 1858 2.435059 GACAAGGACAGGGAGCGC 60.435 66.667 0.00 0.00 0.00 5.92
1632 1859 4.379243 ACAAGGACAGGGAGCGCG 62.379 66.667 0.00 0.00 0.00 6.86
1633 1860 4.069232 CAAGGACAGGGAGCGCGA 62.069 66.667 12.10 0.00 0.00 5.87
1634 1861 3.077556 AAGGACAGGGAGCGCGAT 61.078 61.111 12.10 1.23 0.00 4.58
1635 1862 3.376935 AAGGACAGGGAGCGCGATG 62.377 63.158 12.10 1.83 0.00 3.84
1636 1863 3.838271 GGACAGGGAGCGCGATGA 61.838 66.667 12.10 0.00 0.00 2.92
1637 1864 2.279120 GACAGGGAGCGCGATGAG 60.279 66.667 12.10 0.00 0.00 2.90
1638 1865 4.521062 ACAGGGAGCGCGATGAGC 62.521 66.667 12.10 0.00 43.95 4.26
1702 1929 1.075450 GGTACCGGGACAGGGAGAT 60.075 63.158 21.02 0.00 35.02 2.75
1810 2037 2.501128 CGAGCACCGTGATGGGAT 59.499 61.111 1.65 0.00 44.64 3.85
1812 2039 1.522092 GAGCACCGTGATGGGATCA 59.478 57.895 1.65 0.00 44.64 2.92
1813 2040 0.531532 GAGCACCGTGATGGGATCAG 60.532 60.000 1.65 0.00 44.64 2.90
1814 2041 1.524621 GCACCGTGATGGGATCAGG 60.525 63.158 1.65 0.00 44.64 3.86
1818 2045 3.923354 CGTGATGGGATCAGGGATC 57.077 57.895 0.00 0.00 40.53 3.36
1819 2046 0.037882 CGTGATGGGATCAGGGATCG 60.038 60.000 0.00 0.00 40.53 3.69
1820 2047 1.051812 GTGATGGGATCAGGGATCGT 58.948 55.000 0.00 0.00 40.53 3.73
1821 2048 1.051008 TGATGGGATCAGGGATCGTG 58.949 55.000 0.00 0.00 39.72 4.35
1822 2049 1.342074 GATGGGATCAGGGATCGTGA 58.658 55.000 0.00 0.00 39.72 4.35
1823 2050 1.694150 GATGGGATCAGGGATCGTGAA 59.306 52.381 0.00 0.00 39.72 3.18
1824 2051 0.830648 TGGGATCAGGGATCGTGAAC 59.169 55.000 0.00 0.00 39.72 3.18
1825 2052 0.249489 GGGATCAGGGATCGTGAACG 60.249 60.000 0.00 0.00 39.72 3.95
1826 2053 0.876342 GGATCAGGGATCGTGAACGC 60.876 60.000 0.00 0.00 39.72 4.84
1827 2054 0.876342 GATCAGGGATCGTGAACGCC 60.876 60.000 0.00 0.00 39.60 5.68
1828 2055 1.613317 ATCAGGGATCGTGAACGCCA 61.613 55.000 0.00 0.00 39.60 5.69
1829 2056 2.100631 CAGGGATCGTGAACGCCAC 61.101 63.158 0.00 0.00 42.30 5.01
1830 2057 2.818274 GGGATCGTGAACGCCACC 60.818 66.667 0.00 1.67 42.76 4.61
1831 2058 2.047655 GGATCGTGAACGCCACCA 60.048 61.111 0.00 0.00 42.76 4.17
1832 2059 1.449601 GGATCGTGAACGCCACCAT 60.450 57.895 0.00 0.00 42.76 3.55
1833 2060 1.429148 GGATCGTGAACGCCACCATC 61.429 60.000 7.34 7.34 42.76 3.51
1834 2061 1.752501 GATCGTGAACGCCACCATCG 61.753 60.000 0.00 0.00 42.76 3.84
1835 2062 4.147322 CGTGAACGCCACCATCGC 62.147 66.667 3.38 0.00 42.76 4.58
1843 2070 3.190849 CCACCATCGCGAGCACAG 61.191 66.667 16.66 3.43 0.00 3.66
1844 2071 2.433145 CACCATCGCGAGCACAGT 60.433 61.111 16.66 4.13 0.00 3.55
1845 2072 2.433145 ACCATCGCGAGCACAGTG 60.433 61.111 16.66 6.55 0.00 3.66
1846 2073 2.125952 CCATCGCGAGCACAGTGA 60.126 61.111 16.66 0.00 0.00 3.41
1847 2074 1.737735 CCATCGCGAGCACAGTGAA 60.738 57.895 16.66 0.00 0.00 3.18
1848 2075 1.690283 CCATCGCGAGCACAGTGAAG 61.690 60.000 16.66 0.00 0.00 3.02
1849 2076 1.446792 ATCGCGAGCACAGTGAAGG 60.447 57.895 16.66 0.00 0.00 3.46
1850 2077 2.842394 ATCGCGAGCACAGTGAAGGG 62.842 60.000 16.66 3.04 0.00 3.95
1851 2078 2.343758 GCGAGCACAGTGAAGGGA 59.656 61.111 4.15 0.00 0.00 4.20
1852 2079 1.739562 GCGAGCACAGTGAAGGGAG 60.740 63.158 4.15 0.00 0.00 4.30
1853 2080 1.739562 CGAGCACAGTGAAGGGAGC 60.740 63.158 4.15 0.00 0.00 4.70
1854 2081 1.372683 GAGCACAGTGAAGGGAGCA 59.627 57.895 4.15 0.00 0.00 4.26
1855 2082 0.673022 GAGCACAGTGAAGGGAGCAG 60.673 60.000 4.15 0.00 0.00 4.24
1856 2083 1.673665 GCACAGTGAAGGGAGCAGG 60.674 63.158 4.15 0.00 0.00 4.85
1857 2084 1.002868 CACAGTGAAGGGAGCAGGG 60.003 63.158 0.00 0.00 0.00 4.45
1858 2085 1.152030 ACAGTGAAGGGAGCAGGGA 60.152 57.895 0.00 0.00 0.00 4.20
1859 2086 0.548682 ACAGTGAAGGGAGCAGGGAT 60.549 55.000 0.00 0.00 0.00 3.85
1860 2087 0.179936 CAGTGAAGGGAGCAGGGATC 59.820 60.000 0.00 0.00 0.00 3.36
2131 2358 2.060980 GGGAGCAGGGATCGTGAGT 61.061 63.158 0.00 0.00 0.00 3.41
2145 2372 2.887568 GAGTGCCACCATCGCGAG 60.888 66.667 16.66 4.02 0.00 5.03
2217 2444 1.203237 AGGAGTGAGAGAAGGGAGCAA 60.203 52.381 0.00 0.00 0.00 3.91
2299 2526 5.388654 ACCTGGTTCTTGATTTCTGTGATT 58.611 37.500 0.00 0.00 0.00 2.57
2922 3207 2.026169 TCGGAGAGTCAGAGGTATGTGT 60.026 50.000 0.00 0.00 0.00 3.72
3038 3324 5.386060 TGACATGTGTTTGGTATGGGTTAA 58.614 37.500 1.15 0.00 0.00 2.01
3152 3441 4.908601 TGGATGATATTCGCCAATACCT 57.091 40.909 0.00 0.00 0.00 3.08
3164 3453 5.680619 TCGCCAATACCTCATTTAGTTGAT 58.319 37.500 0.00 0.00 0.00 2.57
3235 3528 3.442625 GGCCGCCTTTAGTTTTCTTACAT 59.557 43.478 0.71 0.00 0.00 2.29
3312 3605 2.372264 CATGAGTGGATTTGACCAGGG 58.628 52.381 0.00 0.00 40.85 4.45
3321 3617 0.698238 TTTGACCAGGGACCATCAGG 59.302 55.000 0.00 0.00 42.21 3.86
3366 3662 0.621609 GCAACCCCAGGTATGTGGTA 59.378 55.000 0.00 0.00 35.96 3.25
3465 4179 9.013229 TGTTATTAACAATTCTCTGTTGATGCT 57.987 29.630 6.79 0.00 39.81 3.79
3565 4279 1.291033 TGCCCTAGGACAGGTGACTAT 59.709 52.381 11.48 0.00 43.80 2.12
3627 4411 6.219537 TCATGGATAACTCCCTCTGATCTA 57.780 41.667 0.00 0.00 41.29 1.98
3628 4412 6.252233 TCATGGATAACTCCCTCTGATCTAG 58.748 44.000 0.00 0.00 41.29 2.43
3639 4423 4.279671 CCCTCTGATCTAGTATCACGCTTT 59.720 45.833 0.00 0.00 0.00 3.51
3773 4579 6.671190 TGTGTGCTTGAGATTTATCTTGTTG 58.329 36.000 0.00 0.00 37.25 3.33
3778 4584 5.570589 GCTTGAGATTTATCTTGTTGTGTGC 59.429 40.000 0.00 0.00 37.25 4.57
3819 4625 2.633481 ACTCTTTTCTTAGGCCACTCGT 59.367 45.455 5.01 0.00 0.00 4.18
3834 4640 3.545481 CGTCATGCTCGGCGTGTC 61.545 66.667 6.85 10.21 44.84 3.67
3890 4696 6.368779 ACAGGTAATTGCCTTGAGTAACTA 57.631 37.500 13.03 0.00 36.58 2.24
3924 4730 1.895798 TGGCATCTCGTTCTCTGTTCT 59.104 47.619 0.00 0.00 0.00 3.01
3964 4773 2.639065 TGTTCTTTCTGCAGACGGTTT 58.361 42.857 18.03 0.00 0.00 3.27
4020 4830 3.421844 AGGAAACACATTTGGTCTAGGC 58.578 45.455 0.00 0.00 0.00 3.93
4136 4946 4.283722 GGATGGTATAATGTTCGAGGGAGT 59.716 45.833 0.00 0.00 0.00 3.85
4138 4948 6.350277 GGATGGTATAATGTTCGAGGGAGTAG 60.350 46.154 0.00 0.00 0.00 2.57
4225 5035 1.003118 CGAACCCCAACCTCAATCTCA 59.997 52.381 0.00 0.00 0.00 3.27
4261 5071 1.306141 CCTGGAGCAGGTGGAGGTA 60.306 63.158 0.00 0.00 45.82 3.08
4536 5349 0.615850 AACCTAGGCCAGAGCAAGAC 59.384 55.000 9.30 0.00 42.56 3.01
4537 5350 1.268283 ACCTAGGCCAGAGCAAGACC 61.268 60.000 9.30 0.00 42.56 3.85
4750 5572 0.890996 CCCAGGTGGTTTCAGCAGAC 60.891 60.000 0.00 0.00 43.32 3.51
4806 5628 2.197577 GGAAGACATGACGCTAGAAGC 58.802 52.381 0.00 0.00 38.02 3.86
4827 5650 3.723764 GCACGCAAATATGGTAAACATCG 59.276 43.478 0.00 0.00 41.03 3.84
4856 5696 7.041984 CGGCCCTTATTCTGAACTCTTTTATAC 60.042 40.741 0.00 0.00 0.00 1.47
4874 5714 9.282247 CTTTTATACTCTGTTTGATCAATGTGC 57.718 33.333 9.40 1.32 0.00 4.57
4921 5762 3.377172 CCGGTTTTCTTCTGTGTGTTTCT 59.623 43.478 0.00 0.00 0.00 2.52
5000 5841 0.877071 ACCTCATGCGAAACTTGCAG 59.123 50.000 0.00 0.00 46.98 4.41
5017 5858 0.177373 CAGTCGGGCCTAACCTTACC 59.823 60.000 0.84 0.00 39.10 2.85
5143 5991 3.499737 GTGCAAGCCGTGATCCCG 61.500 66.667 0.00 0.00 0.00 5.14
5193 6041 0.398318 GGAGTTGGCAAGGTGAGTCT 59.602 55.000 0.00 0.00 0.00 3.24
5212 6066 7.547370 GTGAGTCTTTACTTCTGTGCTATTCAT 59.453 37.037 0.00 0.00 35.56 2.57
5361 6218 1.975407 GACGGGAAGGAGACGGTCA 60.975 63.158 11.27 0.00 37.05 4.02
5550 6414 4.776349 TGACTTGGCATCGTATAACCAAT 58.224 39.130 0.00 0.00 41.17 3.16
5570 6434 5.163591 CCAATATATACTGCATCGACCCGTA 60.164 44.000 0.00 0.00 0.00 4.02
5819 6717 1.202428 GCCCCTACTAAGCTGAGAACG 60.202 57.143 4.63 0.00 0.00 3.95
5820 6718 2.100989 CCCCTACTAAGCTGAGAACGT 58.899 52.381 4.63 0.00 0.00 3.99
5821 6719 3.285484 CCCCTACTAAGCTGAGAACGTA 58.715 50.000 4.63 0.00 0.00 3.57
5832 6730 3.854809 GCTGAGAACGTAGAGCTTAGTTG 59.145 47.826 0.00 0.00 0.00 3.16
5840 6741 6.893958 ACGTAGAGCTTAGTTGATTTGATG 57.106 37.500 0.00 0.00 0.00 3.07
5845 6746 5.655532 AGAGCTTAGTTGATTTGATGCCAAT 59.344 36.000 0.00 0.00 31.46 3.16
5850 6751 8.545420 GCTTAGTTGATTTGATGCCAATATTTG 58.455 33.333 0.00 0.00 31.46 2.32
5855 6756 9.531942 GTTGATTTGATGCCAATATTTGACATA 57.468 29.630 0.00 0.00 33.73 2.29
5903 6804 4.545678 TGGGTAGCAATTGATTGGCTATT 58.454 39.130 10.34 0.00 38.21 1.73
5912 6813 7.041107 GCAATTGATTGGCTATTTGGTTCTTA 58.959 34.615 10.34 0.00 38.21 2.10
5918 6819 4.207165 TGGCTATTTGGTTCTTATCAGCC 58.793 43.478 2.36 2.36 46.01 4.85
5923 6824 6.992715 GCTATTTGGTTCTTATCAGCCTCTTA 59.007 38.462 0.00 0.00 0.00 2.10
5965 6891 1.892474 TGTTGGCATCAAAGTAAGCCC 59.108 47.619 0.00 0.00 46.45 5.19
5967 6893 3.245087 TGTTGGCATCAAAGTAAGCCCTA 60.245 43.478 0.00 0.00 46.45 3.53
5972 6898 4.142381 GGCATCAAAGTAAGCCCTAAAGTG 60.142 45.833 0.00 0.00 41.25 3.16
5978 6904 7.639378 TCAAAGTAAGCCCTAAAGTGGAATAT 58.361 34.615 0.00 0.00 0.00 1.28
5989 6915 7.232127 CCCTAAAGTGGAATATGATGCTTGAAT 59.768 37.037 0.00 0.00 0.00 2.57
5990 6916 8.080417 CCTAAAGTGGAATATGATGCTTGAATG 58.920 37.037 0.00 0.00 0.00 2.67
5991 6917 6.401047 AAGTGGAATATGATGCTTGAATGG 57.599 37.500 0.00 0.00 0.00 3.16
5992 6918 4.831155 AGTGGAATATGATGCTTGAATGGG 59.169 41.667 0.00 0.00 0.00 4.00
5993 6919 4.828939 GTGGAATATGATGCTTGAATGGGA 59.171 41.667 0.00 0.00 0.00 4.37
5994 6920 4.828939 TGGAATATGATGCTTGAATGGGAC 59.171 41.667 0.00 0.00 0.00 4.46
6006 6932 1.351017 GAATGGGACCAGGTGAGTGAA 59.649 52.381 0.00 0.00 0.00 3.18
6070 7101 2.546195 AGTAGACAAGATCGTGCGAC 57.454 50.000 8.68 8.06 0.00 5.19
6087 7118 3.493129 TGCGACGGCATAAGTATTGAATC 59.507 43.478 0.00 0.00 46.21 2.52
6112 7143 2.162408 GGTCACTGAACCTTGCTATTGC 59.838 50.000 0.00 0.00 36.32 3.56
6134 7165 2.048222 TGCAAGCCTCGAGTTCCG 60.048 61.111 12.31 0.00 40.25 4.30
6146 7177 3.659786 TCGAGTTCCGACATCAAATGTT 58.340 40.909 0.00 0.00 45.03 2.71
6160 7191 8.241497 ACATCAAATGTTCTATGCCAACATAT 57.759 30.769 0.00 0.00 42.47 1.78
6162 7193 9.836076 CATCAAATGTTCTATGCCAACATATAG 57.164 33.333 0.00 0.00 42.47 1.31
6163 7194 9.797642 ATCAAATGTTCTATGCCAACATATAGA 57.202 29.630 0.00 0.00 42.47 1.98
6165 7196 9.888878 CAAATGTTCTATGCCAACATATAGAAG 57.111 33.333 6.87 0.00 42.47 2.85
6166 7197 8.627208 AATGTTCTATGCCAACATATAGAAGG 57.373 34.615 6.87 0.00 42.47 3.46
6200 7231 6.128607 TGCAACAATCTGCCATTTTATTTTCG 60.129 34.615 0.00 0.00 41.90 3.46
6205 7236 4.732784 TCTGCCATTTTATTTTCGTGCTC 58.267 39.130 0.00 0.00 0.00 4.26
6213 7244 7.329226 CCATTTTATTTTCGTGCTCAAGATTGT 59.671 33.333 0.00 0.00 0.00 2.71
6214 7245 7.621832 TTTTATTTTCGTGCTCAAGATTGTG 57.378 32.000 0.00 0.00 0.00 3.33
6250 7281 4.337274 TCCGATGAGTGACGTACATTATGT 59.663 41.667 2.58 2.58 0.00 2.29
6402 7440 0.664761 CTGGACAACACAAGTGGCAG 59.335 55.000 5.08 0.00 34.19 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.832608 GGTCGGGGTTGCGGCTAG 62.833 72.222 0.00 0.00 0.00 3.42
15 16 4.939368 TTGTGGGTCGGGGTTGCG 62.939 66.667 0.00 0.00 0.00 4.85
16 17 2.983592 CTTGTGGGTCGGGGTTGC 60.984 66.667 0.00 0.00 0.00 4.17
17 18 1.599797 GACTTGTGGGTCGGGGTTG 60.600 63.158 0.00 0.00 0.00 3.77
18 19 2.833957 GACTTGTGGGTCGGGGTT 59.166 61.111 0.00 0.00 0.00 4.11
24 25 0.666577 CTTCCGTCGACTTGTGGGTC 60.667 60.000 14.70 0.00 0.00 4.46
25 26 1.366366 CTTCCGTCGACTTGTGGGT 59.634 57.895 14.70 0.00 0.00 4.51
26 27 2.027625 GCTTCCGTCGACTTGTGGG 61.028 63.158 14.70 7.05 0.00 4.61
27 28 0.670546 ATGCTTCCGTCGACTTGTGG 60.671 55.000 14.70 7.45 0.00 4.17
28 29 0.716108 GATGCTTCCGTCGACTTGTG 59.284 55.000 14.70 2.72 0.00 3.33
29 30 0.317160 TGATGCTTCCGTCGACTTGT 59.683 50.000 14.70 0.00 0.00 3.16
30 31 0.994995 CTGATGCTTCCGTCGACTTG 59.005 55.000 14.70 4.76 0.00 3.16
31 32 0.737715 GCTGATGCTTCCGTCGACTT 60.738 55.000 14.70 0.00 36.03 3.01
32 33 1.153745 GCTGATGCTTCCGTCGACT 60.154 57.895 14.70 0.00 36.03 4.18
33 34 2.167861 GGCTGATGCTTCCGTCGAC 61.168 63.158 5.18 5.18 39.59 4.20
34 35 2.184322 GGCTGATGCTTCCGTCGA 59.816 61.111 0.00 0.00 39.59 4.20
35 36 2.892425 GGGCTGATGCTTCCGTCG 60.892 66.667 0.00 0.00 39.59 5.12
36 37 2.514824 GGGGCTGATGCTTCCGTC 60.515 66.667 0.00 0.00 39.59 4.79
37 38 3.329889 TGGGGCTGATGCTTCCGT 61.330 61.111 0.00 0.00 39.59 4.69
38 39 2.825836 GTGGGGCTGATGCTTCCG 60.826 66.667 0.00 0.00 39.59 4.30
39 40 0.899717 TTTGTGGGGCTGATGCTTCC 60.900 55.000 0.00 0.00 39.59 3.46
40 41 0.968405 TTTTGTGGGGCTGATGCTTC 59.032 50.000 0.00 0.00 39.59 3.86
41 42 0.681175 GTTTTGTGGGGCTGATGCTT 59.319 50.000 0.00 0.00 39.59 3.91
42 43 0.178953 AGTTTTGTGGGGCTGATGCT 60.179 50.000 0.00 0.00 39.59 3.79
43 44 1.202348 GTAGTTTTGTGGGGCTGATGC 59.798 52.381 0.00 0.00 38.76 3.91
44 45 2.513753 TGTAGTTTTGTGGGGCTGATG 58.486 47.619 0.00 0.00 0.00 3.07
45 46 2.969821 TGTAGTTTTGTGGGGCTGAT 57.030 45.000 0.00 0.00 0.00 2.90
46 47 2.969821 ATGTAGTTTTGTGGGGCTGA 57.030 45.000 0.00 0.00 0.00 4.26
47 48 4.079253 ACTTATGTAGTTTTGTGGGGCTG 58.921 43.478 0.00 0.00 31.29 4.85
48 49 4.079253 CACTTATGTAGTTTTGTGGGGCT 58.921 43.478 0.00 0.00 33.85 5.19
49 50 4.076394 TCACTTATGTAGTTTTGTGGGGC 58.924 43.478 0.00 0.00 33.85 5.80
50 51 4.457949 GGTCACTTATGTAGTTTTGTGGGG 59.542 45.833 0.00 0.00 33.85 4.96
51 52 4.153475 CGGTCACTTATGTAGTTTTGTGGG 59.847 45.833 0.00 0.00 33.85 4.61
52 53 4.753107 ACGGTCACTTATGTAGTTTTGTGG 59.247 41.667 0.00 0.00 33.85 4.17
53 54 5.333798 CCACGGTCACTTATGTAGTTTTGTG 60.334 44.000 0.00 0.00 33.85 3.33
54 55 4.753107 CCACGGTCACTTATGTAGTTTTGT 59.247 41.667 0.00 0.00 33.85 2.83
55 56 4.153475 CCCACGGTCACTTATGTAGTTTTG 59.847 45.833 0.00 0.00 33.85 2.44
56 57 4.320870 CCCACGGTCACTTATGTAGTTTT 58.679 43.478 0.00 0.00 33.85 2.43
57 58 3.307199 CCCCACGGTCACTTATGTAGTTT 60.307 47.826 0.00 0.00 33.85 2.66
58 59 2.235402 CCCCACGGTCACTTATGTAGTT 59.765 50.000 0.00 0.00 33.85 2.24
59 60 1.829222 CCCCACGGTCACTTATGTAGT 59.171 52.381 0.00 0.00 37.68 2.73
60 61 2.104967 TCCCCACGGTCACTTATGTAG 58.895 52.381 0.00 0.00 0.00 2.74
61 62 1.826720 GTCCCCACGGTCACTTATGTA 59.173 52.381 0.00 0.00 0.00 2.29
62 63 0.611714 GTCCCCACGGTCACTTATGT 59.388 55.000 0.00 0.00 0.00 2.29
63 64 0.459585 CGTCCCCACGGTCACTTATG 60.460 60.000 0.00 0.00 42.73 1.90
64 65 0.612732 TCGTCCCCACGGTCACTTAT 60.613 55.000 0.00 0.00 46.70 1.73
65 66 0.612732 ATCGTCCCCACGGTCACTTA 60.613 55.000 0.00 0.00 46.70 2.24
66 67 1.911766 ATCGTCCCCACGGTCACTT 60.912 57.895 0.00 0.00 46.70 3.16
67 68 2.283676 ATCGTCCCCACGGTCACT 60.284 61.111 0.00 0.00 46.70 3.41
68 69 2.125673 CATCGTCCCCACGGTCAC 60.126 66.667 0.00 0.00 46.70 3.67
69 70 3.387091 CCATCGTCCCCACGGTCA 61.387 66.667 0.00 0.00 46.70 4.02
70 71 4.157120 CCCATCGTCCCCACGGTC 62.157 72.222 0.00 0.00 46.70 4.79
74 75 2.516930 CATGCCCATCGTCCCCAC 60.517 66.667 0.00 0.00 0.00 4.61
75 76 3.807839 CCATGCCCATCGTCCCCA 61.808 66.667 0.00 0.00 0.00 4.96
76 77 4.586235 CCCATGCCCATCGTCCCC 62.586 72.222 0.00 0.00 0.00 4.81
77 78 3.809013 ACCCATGCCCATCGTCCC 61.809 66.667 0.00 0.00 0.00 4.46
78 79 2.516930 CACCCATGCCCATCGTCC 60.517 66.667 0.00 0.00 0.00 4.79
79 80 2.516930 CCACCCATGCCCATCGTC 60.517 66.667 0.00 0.00 0.00 4.20
80 81 4.820744 GCCACCCATGCCCATCGT 62.821 66.667 0.00 0.00 0.00 3.73
81 82 4.818863 TGCCACCCATGCCCATCG 62.819 66.667 0.00 0.00 0.00 3.84
82 83 3.149648 GTGCCACCCATGCCCATC 61.150 66.667 0.00 0.00 0.00 3.51
83 84 4.783501 GGTGCCACCCATGCCCAT 62.784 66.667 1.17 0.00 30.04 4.00
88 89 3.055719 GTCACGGTGCCACCCATG 61.056 66.667 8.62 7.38 33.75 3.66
89 90 4.344865 GGTCACGGTGCCACCCAT 62.345 66.667 8.62 0.00 33.75 4.00
105 106 4.489771 GATGACCGTGCCCCCAGG 62.490 72.222 0.00 0.00 0.00 4.45
106 107 4.838152 CGATGACCGTGCCCCCAG 62.838 72.222 0.00 0.00 0.00 4.45
115 116 2.896854 CCATGCCCACGATGACCG 60.897 66.667 0.00 0.00 45.44 4.79
116 117 3.211963 GCCATGCCCACGATGACC 61.212 66.667 0.00 0.00 0.00 4.02
117 118 3.211963 GGCCATGCCCACGATGAC 61.212 66.667 0.00 0.00 44.06 3.06
133 134 3.209097 CAATACCGCCCAAGCCGG 61.209 66.667 0.00 0.00 38.25 6.13
134 135 2.437716 ACAATACCGCCCAAGCCG 60.438 61.111 0.00 0.00 34.57 5.52
135 136 1.377987 TCACAATACCGCCCAAGCC 60.378 57.895 0.00 0.00 34.57 4.35
136 137 0.676782 AGTCACAATACCGCCCAAGC 60.677 55.000 0.00 0.00 0.00 4.01
137 138 1.468520 CAAGTCACAATACCGCCCAAG 59.531 52.381 0.00 0.00 0.00 3.61
138 139 1.529226 CAAGTCACAATACCGCCCAA 58.471 50.000 0.00 0.00 0.00 4.12
139 140 0.322098 CCAAGTCACAATACCGCCCA 60.322 55.000 0.00 0.00 0.00 5.36
140 141 1.029947 CCCAAGTCACAATACCGCCC 61.030 60.000 0.00 0.00 0.00 6.13
141 142 1.029947 CCCCAAGTCACAATACCGCC 61.030 60.000 0.00 0.00 0.00 6.13
142 143 0.035820 TCCCCAAGTCACAATACCGC 60.036 55.000 0.00 0.00 0.00 5.68
143 144 2.012051 GCTCCCCAAGTCACAATACCG 61.012 57.143 0.00 0.00 0.00 4.02
144 145 1.751437 GCTCCCCAAGTCACAATACC 58.249 55.000 0.00 0.00 0.00 2.73
145 146 1.369625 CGCTCCCCAAGTCACAATAC 58.630 55.000 0.00 0.00 0.00 1.89
146 147 0.251916 CCGCTCCCCAAGTCACAATA 59.748 55.000 0.00 0.00 0.00 1.90
147 148 1.002134 CCGCTCCCCAAGTCACAAT 60.002 57.895 0.00 0.00 0.00 2.71
148 149 2.429930 CCGCTCCCCAAGTCACAA 59.570 61.111 0.00 0.00 0.00 3.33
149 150 2.847234 ACCGCTCCCCAAGTCACA 60.847 61.111 0.00 0.00 0.00 3.58
150 151 2.358737 CACCGCTCCCCAAGTCAC 60.359 66.667 0.00 0.00 0.00 3.67
151 152 2.525629 TCACCGCTCCCCAAGTCA 60.526 61.111 0.00 0.00 0.00 3.41
152 153 2.266055 CTCACCGCTCCCCAAGTC 59.734 66.667 0.00 0.00 0.00 3.01
153 154 4.021925 GCTCACCGCTCCCCAAGT 62.022 66.667 0.00 0.00 35.14 3.16
186 187 1.529226 CAAGTCACAATACCGCCCAA 58.471 50.000 0.00 0.00 0.00 4.12
195 196 1.002134 CCGCTCCCCAAGTCACAAT 60.002 57.895 0.00 0.00 0.00 2.71
196 197 2.429930 CCGCTCCCCAAGTCACAA 59.570 61.111 0.00 0.00 0.00 3.33
197 198 2.847234 ACCGCTCCCCAAGTCACA 60.847 61.111 0.00 0.00 0.00 3.58
237 238 2.657237 GTAGGTCACAGTGCCGCT 59.343 61.111 0.00 0.00 0.00 5.52
277 278 1.457267 ACAATGCCACCAGTGCCAA 60.457 52.632 0.00 0.00 40.52 4.52
296 297 1.132453 GCTTTCCTTGGTTACGATGCC 59.868 52.381 0.00 0.00 0.00 4.40
334 335 1.078759 GGAGCATGTTCGTCCAGTCG 61.079 60.000 3.27 0.00 0.00 4.18
336 337 0.247736 GAGGAGCATGTTCGTCCAGT 59.752 55.000 18.27 0.00 32.23 4.00
347 348 4.498520 CCACGCGTCGAGGAGCAT 62.499 66.667 9.86 0.00 39.84 3.79
354 355 3.115892 GGAAATGCCACGCGTCGA 61.116 61.111 9.86 0.00 36.34 4.20
362 363 1.153568 CTCTCGCTCGGAAATGCCA 60.154 57.895 0.00 0.00 35.94 4.92
384 385 1.722507 GTTTCGTTGCTCACTGCGC 60.723 57.895 0.00 0.00 46.63 6.09
387 388 1.136252 CGATGGTTTCGTTGCTCACTG 60.136 52.381 0.00 0.00 43.01 3.66
410 411 1.616159 TAAGGAAGCCACCAAACAGC 58.384 50.000 0.00 0.00 0.00 4.40
412 413 3.306472 AGTTAAGGAAGCCACCAAACA 57.694 42.857 13.34 0.00 33.50 2.83
419 420 2.979678 AGTGGAGAAGTTAAGGAAGCCA 59.020 45.455 0.00 0.00 0.00 4.75
451 453 3.047877 GACGGACGGCAACAAGGG 61.048 66.667 0.00 0.00 0.00 3.95
473 475 2.201436 GAGGCGTCACGAGCAGAGAA 62.201 60.000 0.00 0.00 36.08 2.87
498 500 1.595466 TTTCAATGGTTGTACGGCGT 58.405 45.000 19.64 19.64 0.00 5.68
508 510 1.613437 CAACCTCGCCTTTTCAATGGT 59.387 47.619 0.00 0.00 0.00 3.55
516 518 1.148273 TGTCAGCAACCTCGCCTTT 59.852 52.632 0.00 0.00 0.00 3.11
602 604 1.871039 CATCGAAACTTTGGTGGACGT 59.129 47.619 0.00 0.00 0.00 4.34
609 611 4.700213 ACCAATCCTACATCGAAACTTTGG 59.300 41.667 0.00 0.00 37.64 3.28
610 612 5.880054 ACCAATCCTACATCGAAACTTTG 57.120 39.130 0.00 0.00 0.00 2.77
612 614 5.313712 ACAACCAATCCTACATCGAAACTT 58.686 37.500 0.00 0.00 0.00 2.66
614 616 4.693566 TGACAACCAATCCTACATCGAAAC 59.306 41.667 0.00 0.00 0.00 2.78
615 617 4.900684 TGACAACCAATCCTACATCGAAA 58.099 39.130 0.00 0.00 0.00 3.46
616 618 4.503910 CTGACAACCAATCCTACATCGAA 58.496 43.478 0.00 0.00 0.00 3.71
618 620 2.609459 GCTGACAACCAATCCTACATCG 59.391 50.000 0.00 0.00 0.00 3.84
619 621 3.878778 AGCTGACAACCAATCCTACATC 58.121 45.455 0.00 0.00 0.00 3.06
620 622 4.012374 CAAGCTGACAACCAATCCTACAT 58.988 43.478 0.00 0.00 0.00 2.29
621 623 3.411446 CAAGCTGACAACCAATCCTACA 58.589 45.455 0.00 0.00 0.00 2.74
622 624 2.162408 GCAAGCTGACAACCAATCCTAC 59.838 50.000 0.00 0.00 0.00 3.18
623 625 2.040278 AGCAAGCTGACAACCAATCCTA 59.960 45.455 0.00 0.00 0.00 2.94
624 626 1.202976 AGCAAGCTGACAACCAATCCT 60.203 47.619 0.00 0.00 0.00 3.24
625 627 1.251251 AGCAAGCTGACAACCAATCC 58.749 50.000 0.00 0.00 0.00 3.01
626 628 2.608752 CCAAGCAAGCTGACAACCAATC 60.609 50.000 0.00 0.00 0.00 2.67
627 629 1.342174 CCAAGCAAGCTGACAACCAAT 59.658 47.619 0.00 0.00 0.00 3.16
628 630 0.746063 CCAAGCAAGCTGACAACCAA 59.254 50.000 0.00 0.00 0.00 3.67
630 632 0.031178 CACCAAGCAAGCTGACAACC 59.969 55.000 0.00 0.00 0.00 3.77
631 633 0.595825 GCACCAAGCAAGCTGACAAC 60.596 55.000 0.00 0.00 44.79 3.32
632 634 1.735360 GCACCAAGCAAGCTGACAA 59.265 52.632 0.00 0.00 44.79 3.18
633 635 3.435590 GCACCAAGCAAGCTGACA 58.564 55.556 0.00 0.00 44.79 3.58
642 644 1.009675 CGTGTTGTCTGCACCAAGC 60.010 57.895 0.00 0.00 45.96 4.01
645 647 0.943673 CATTCGTGTTGTCTGCACCA 59.056 50.000 0.00 0.00 33.61 4.17
647 649 3.431912 TGTATCATTCGTGTTGTCTGCAC 59.568 43.478 0.00 0.00 0.00 4.57
648 650 3.658709 TGTATCATTCGTGTTGTCTGCA 58.341 40.909 0.00 0.00 0.00 4.41
650 652 4.093261 TGCATGTATCATTCGTGTTGTCTG 59.907 41.667 0.00 0.00 0.00 3.51
651 653 4.252878 TGCATGTATCATTCGTGTTGTCT 58.747 39.130 0.00 0.00 0.00 3.41
653 655 5.237127 CCTATGCATGTATCATTCGTGTTGT 59.763 40.000 10.16 0.00 0.00 3.32
655 657 5.237127 CACCTATGCATGTATCATTCGTGTT 59.763 40.000 10.16 0.00 0.00 3.32
656 658 4.751600 CACCTATGCATGTATCATTCGTGT 59.248 41.667 10.16 0.00 0.00 4.49
657 659 4.990426 TCACCTATGCATGTATCATTCGTG 59.010 41.667 10.16 1.57 0.00 4.35
658 660 5.213891 TCACCTATGCATGTATCATTCGT 57.786 39.130 10.16 0.00 0.00 3.85
659 661 6.148315 ACATTCACCTATGCATGTATCATTCG 59.852 38.462 10.16 0.00 40.38 3.34
661 663 6.999871 TGACATTCACCTATGCATGTATCATT 59.000 34.615 10.16 0.00 41.95 2.57
662 664 6.429078 GTGACATTCACCTATGCATGTATCAT 59.571 38.462 10.16 0.00 41.95 2.45
663 665 5.759763 GTGACATTCACCTATGCATGTATCA 59.240 40.000 10.16 0.00 41.95 2.15
665 667 4.751600 CGTGACATTCACCTATGCATGTAT 59.248 41.667 10.16 0.82 41.95 2.29
667 669 2.938451 CGTGACATTCACCTATGCATGT 59.062 45.455 10.16 0.00 44.17 3.21
668 670 2.286595 GCGTGACATTCACCTATGCATG 60.287 50.000 10.16 0.00 44.20 4.06
669 671 1.942657 GCGTGACATTCACCTATGCAT 59.057 47.619 3.79 3.79 44.20 3.96
670 672 1.368641 GCGTGACATTCACCTATGCA 58.631 50.000 0.00 0.00 44.20 3.96
671 673 0.657840 GGCGTGACATTCACCTATGC 59.342 55.000 0.76 0.00 44.20 3.14
672 674 1.935873 CTGGCGTGACATTCACCTATG 59.064 52.381 0.76 0.00 44.20 2.23
673 675 1.555075 ACTGGCGTGACATTCACCTAT 59.445 47.619 0.76 0.00 44.20 2.57
674 676 0.973632 ACTGGCGTGACATTCACCTA 59.026 50.000 0.76 0.00 44.20 3.08
675 677 0.108585 AACTGGCGTGACATTCACCT 59.891 50.000 0.76 0.00 44.20 4.00
676 678 0.951558 AAACTGGCGTGACATTCACC 59.048 50.000 0.76 0.00 44.20 4.02
677 679 1.873591 AGAAACTGGCGTGACATTCAC 59.126 47.619 0.00 0.00 43.65 3.18
678 680 2.254546 AGAAACTGGCGTGACATTCA 57.745 45.000 0.00 0.00 0.00 2.57
679 681 3.003275 TGAAAGAAACTGGCGTGACATTC 59.997 43.478 0.00 0.00 0.00 2.67
680 682 2.948979 TGAAAGAAACTGGCGTGACATT 59.051 40.909 0.00 0.00 0.00 2.71
681 683 2.571212 TGAAAGAAACTGGCGTGACAT 58.429 42.857 0.00 0.00 0.00 3.06
682 684 2.031258 TGAAAGAAACTGGCGTGACA 57.969 45.000 0.00 0.00 0.00 3.58
683 685 2.918131 GCATGAAAGAAACTGGCGTGAC 60.918 50.000 0.00 0.00 0.00 3.67
684 686 1.266718 GCATGAAAGAAACTGGCGTGA 59.733 47.619 0.00 0.00 0.00 4.35
685 687 1.666888 GGCATGAAAGAAACTGGCGTG 60.667 52.381 0.00 0.00 0.00 5.34
686 688 0.598065 GGCATGAAAGAAACTGGCGT 59.402 50.000 0.00 0.00 0.00 5.68
687 689 3.406682 GGCATGAAAGAAACTGGCG 57.593 52.632 0.00 0.00 0.00 5.69
688 690 0.733909 GCGGCATGAAAGAAACTGGC 60.734 55.000 0.00 0.00 0.00 4.85
689 691 0.454957 CGCGGCATGAAAGAAACTGG 60.455 55.000 0.00 0.00 0.00 4.00
690 692 0.454957 CCGCGGCATGAAAGAAACTG 60.455 55.000 14.67 0.00 0.00 3.16
691 693 1.875963 CCGCGGCATGAAAGAAACT 59.124 52.632 14.67 0.00 0.00 2.66
692 694 1.801512 GCCGCGGCATGAAAGAAAC 60.802 57.895 43.55 10.50 41.49 2.78
693 695 2.566010 GCCGCGGCATGAAAGAAA 59.434 55.556 43.55 0.00 41.49 2.52
694 696 3.439540 GGCCGCGGCATGAAAGAA 61.440 61.111 46.88 0.00 44.11 2.52
695 697 4.713735 TGGCCGCGGCATGAAAGA 62.714 61.111 46.88 20.90 44.11 2.52
696 698 4.481112 GTGGCCGCGGCATGAAAG 62.481 66.667 46.88 11.70 44.11 2.62
700 702 4.132441 AAATGTGGCCGCGGCATG 62.132 61.111 46.88 14.62 44.11 4.06
701 703 3.825611 GAAATGTGGCCGCGGCAT 61.826 61.111 46.88 31.58 44.11 4.40
703 705 3.565910 TTTGAAATGTGGCCGCGGC 62.566 57.895 41.63 41.63 41.06 6.53
704 706 1.006805 TTTTGAAATGTGGCCGCGG 60.007 52.632 24.05 24.05 0.00 6.46
705 707 0.318614 ACTTTTGAAATGTGGCCGCG 60.319 50.000 12.58 0.00 0.00 6.46
706 708 1.139163 CACTTTTGAAATGTGGCCGC 58.861 50.000 10.11 10.11 0.00 6.53
707 709 1.782044 CCACTTTTGAAATGTGGCCG 58.218 50.000 24.14 7.04 43.61 6.13
711 713 4.022416 TCGGGATTCCACTTTTGAAATGTG 60.022 41.667 14.77 14.77 0.00 3.21
712 714 4.148838 TCGGGATTCCACTTTTGAAATGT 58.851 39.130 4.80 0.00 0.00 2.71
713 715 4.458989 TCTCGGGATTCCACTTTTGAAATG 59.541 41.667 4.80 0.00 0.00 2.32
714 716 4.662278 TCTCGGGATTCCACTTTTGAAAT 58.338 39.130 4.80 0.00 0.00 2.17
715 717 4.093472 TCTCGGGATTCCACTTTTGAAA 57.907 40.909 4.80 0.00 0.00 2.69
716 718 3.780804 TCTCGGGATTCCACTTTTGAA 57.219 42.857 4.80 0.00 0.00 2.69
717 719 3.780804 TTCTCGGGATTCCACTTTTGA 57.219 42.857 4.80 0.00 0.00 2.69
718 720 5.048083 TCAAATTCTCGGGATTCCACTTTTG 60.048 40.000 4.80 5.91 0.00 2.44
719 721 5.076873 TCAAATTCTCGGGATTCCACTTTT 58.923 37.500 4.80 0.00 0.00 2.27
720 722 4.662278 TCAAATTCTCGGGATTCCACTTT 58.338 39.130 4.80 0.00 0.00 2.66
721 723 4.301072 TCAAATTCTCGGGATTCCACTT 57.699 40.909 4.80 0.00 0.00 3.16
722 724 4.301072 TTCAAATTCTCGGGATTCCACT 57.699 40.909 4.80 0.00 0.00 4.00
723 725 5.343249 CAATTCAAATTCTCGGGATTCCAC 58.657 41.667 4.80 0.00 0.00 4.02
724 726 4.402155 CCAATTCAAATTCTCGGGATTCCA 59.598 41.667 4.80 0.00 0.00 3.53
725 727 4.202151 CCCAATTCAAATTCTCGGGATTCC 60.202 45.833 4.17 0.00 33.83 3.01
726 728 4.402474 ACCCAATTCAAATTCTCGGGATTC 59.598 41.667 13.51 0.00 36.04 2.52
727 729 4.160252 CACCCAATTCAAATTCTCGGGATT 59.840 41.667 13.51 0.00 36.04 3.01
728 730 3.701040 CACCCAATTCAAATTCTCGGGAT 59.299 43.478 13.51 0.31 36.04 3.85
729 731 3.088532 CACCCAATTCAAATTCTCGGGA 58.911 45.455 13.51 0.00 36.04 5.14
730 732 2.825532 ACACCCAATTCAAATTCTCGGG 59.174 45.455 7.48 7.48 38.23 5.14
731 733 3.426159 CGACACCCAATTCAAATTCTCGG 60.426 47.826 0.00 0.00 0.00 4.63
732 734 3.426159 CCGACACCCAATTCAAATTCTCG 60.426 47.826 0.00 0.00 0.00 4.04
733 735 3.506067 ACCGACACCCAATTCAAATTCTC 59.494 43.478 0.00 0.00 0.00 2.87
734 736 3.496331 ACCGACACCCAATTCAAATTCT 58.504 40.909 0.00 0.00 0.00 2.40
757 759 2.078914 CGTACCGTCGTGTGCTGTC 61.079 63.158 0.00 0.00 0.00 3.51
758 760 2.050714 CGTACCGTCGTGTGCTGT 60.051 61.111 0.00 0.00 0.00 4.40
759 761 1.796355 CTCGTACCGTCGTGTGCTG 60.796 63.158 0.00 0.00 0.00 4.41
760 762 2.180131 GACTCGTACCGTCGTGTGCT 62.180 60.000 0.00 0.00 37.60 4.40
761 763 1.795177 GACTCGTACCGTCGTGTGC 60.795 63.158 0.00 0.00 37.60 4.57
762 764 1.154338 GGACTCGTACCGTCGTGTG 60.154 63.158 0.00 0.00 37.60 3.82
780 782 3.617669 ACGCTCGTTGATTTTTGACTTG 58.382 40.909 0.00 0.00 0.00 3.16
822 824 1.228033 TCGGAGTCAGACACGACCA 60.228 57.895 14.25 0.00 36.52 4.02
825 827 1.563435 GACGTCGGAGTCAGACACGA 61.563 60.000 21.04 15.05 40.65 4.35
860 870 1.180029 GGCGGGGCGAAGTATATAGA 58.820 55.000 0.00 0.00 0.00 1.98
880 890 5.644636 TCGATTGGTTGGTTATACTTGGTTC 59.355 40.000 0.00 0.00 0.00 3.62
884 894 4.938832 TGGTCGATTGGTTGGTTATACTTG 59.061 41.667 0.00 0.00 0.00 3.16
885 895 5.046159 TCTGGTCGATTGGTTGGTTATACTT 60.046 40.000 0.00 0.00 0.00 2.24
886 896 4.468510 TCTGGTCGATTGGTTGGTTATACT 59.531 41.667 0.00 0.00 0.00 2.12
888 898 4.682320 GCTCTGGTCGATTGGTTGGTTATA 60.682 45.833 0.00 0.00 0.00 0.98
889 899 3.873910 CTCTGGTCGATTGGTTGGTTAT 58.126 45.455 0.00 0.00 0.00 1.89
890 900 2.614481 GCTCTGGTCGATTGGTTGGTTA 60.614 50.000 0.00 0.00 0.00 2.85
891 901 1.882352 GCTCTGGTCGATTGGTTGGTT 60.882 52.381 0.00 0.00 0.00 3.67
892 902 0.321653 GCTCTGGTCGATTGGTTGGT 60.322 55.000 0.00 0.00 0.00 3.67
960 970 4.309950 GTTCCGGTCGGTGCTGGT 62.310 66.667 9.36 0.00 36.33 4.00
1077 1094 3.319198 GCGGTTCTCACCTGGGGA 61.319 66.667 0.00 0.00 41.64 4.81
1135 1156 3.033185 CCCTATGCGCGAAAAATAAACG 58.967 45.455 12.10 0.00 0.00 3.60
1174 1199 0.322187 CTACCCAAACCCCCTGTTCG 60.322 60.000 0.00 0.00 35.67 3.95
1286 1512 2.287103 GGACCAGAACTGAAAACACGAC 59.713 50.000 3.19 0.00 0.00 4.34
1287 1513 2.557317 GGACCAGAACTGAAAACACGA 58.443 47.619 3.19 0.00 0.00 4.35
1307 1533 0.240945 ATTCAGTTTTCAAGGGCGCG 59.759 50.000 0.00 0.00 0.00 6.86
1345 1571 4.918810 TGCATCTAGAGCATCGAAACTA 57.081 40.909 11.38 0.00 42.67 2.24
1370 1596 2.642427 TGGAATCCCATCATCACAACG 58.358 47.619 0.00 0.00 37.58 4.10
1405 1632 9.475505 CACACATCACAAAATAAACAAAAACTG 57.524 29.630 0.00 0.00 0.00 3.16
1424 1651 1.938577 CTGCTAGCCACATCACACATC 59.061 52.381 13.29 0.00 0.00 3.06
1437 1664 2.981859 TAACTACCAAGCCTGCTAGC 57.018 50.000 8.10 8.10 0.00 3.42
1468 1695 7.093465 GGGCCTGCTAGTATGATAAACATAGTA 60.093 40.741 0.84 0.00 42.79 1.82
1469 1696 6.295916 GGGCCTGCTAGTATGATAAACATAGT 60.296 42.308 0.84 0.00 44.39 2.12
1470 1697 6.070538 AGGGCCTGCTAGTATGATAAACATAG 60.071 42.308 4.50 0.00 41.41 2.23
1507 1734 9.273016 GAATTCCTCCGTCAGATATATTCAAAA 57.727 33.333 0.00 0.00 0.00 2.44
1511 1738 8.037758 ACATGAATTCCTCCGTCAGATATATTC 58.962 37.037 0.00 0.00 0.00 1.75
1575 1802 0.677098 CGGTCTCTGGAACTCGAGGA 60.677 60.000 18.41 2.62 0.00 3.71
1616 1843 3.376935 ATCGCGCTCCCTGTCCTTG 62.377 63.158 5.56 0.00 0.00 3.61
1617 1844 3.077556 ATCGCGCTCCCTGTCCTT 61.078 61.111 5.56 0.00 0.00 3.36
1618 1845 3.842923 CATCGCGCTCCCTGTCCT 61.843 66.667 5.56 0.00 0.00 3.85
1619 1846 3.781770 CTCATCGCGCTCCCTGTCC 62.782 68.421 5.56 0.00 0.00 4.02
1620 1847 2.279120 CTCATCGCGCTCCCTGTC 60.279 66.667 5.56 0.00 0.00 3.51
1621 1848 4.521062 GCTCATCGCGCTCCCTGT 62.521 66.667 5.56 0.00 0.00 4.00
1622 1849 4.519437 TGCTCATCGCGCTCCCTG 62.519 66.667 5.56 0.00 43.27 4.45
1623 1850 4.521062 GTGCTCATCGCGCTCCCT 62.521 66.667 5.56 0.00 45.56 4.20
1629 1856 1.690283 CTGTCCTTGTGCTCATCGCG 61.690 60.000 0.00 0.00 43.27 5.87
1630 1857 1.364626 CCTGTCCTTGTGCTCATCGC 61.365 60.000 0.00 0.00 39.77 4.58
1631 1858 0.742281 CCCTGTCCTTGTGCTCATCG 60.742 60.000 0.00 0.00 0.00 3.84
1632 1859 0.615331 TCCCTGTCCTTGTGCTCATC 59.385 55.000 0.00 0.00 0.00 2.92
1633 1860 0.617413 CTCCCTGTCCTTGTGCTCAT 59.383 55.000 0.00 0.00 0.00 2.90
1634 1861 2.061220 CTCCCTGTCCTTGTGCTCA 58.939 57.895 0.00 0.00 0.00 4.26
1635 1862 1.376553 GCTCCCTGTCCTTGTGCTC 60.377 63.158 0.00 0.00 0.00 4.26
1636 1863 2.753029 GCTCCCTGTCCTTGTGCT 59.247 61.111 0.00 0.00 0.00 4.40
1637 1864 2.743928 CGCTCCCTGTCCTTGTGC 60.744 66.667 0.00 0.00 0.00 4.57
1638 1865 2.743928 GCGCTCCCTGTCCTTGTG 60.744 66.667 0.00 0.00 0.00 3.33
1639 1866 4.021925 GGCGCTCCCTGTCCTTGT 62.022 66.667 7.64 0.00 0.00 3.16
1676 1903 1.222936 GTCCCGGTACCTCTCTCGA 59.777 63.158 10.90 0.00 0.00 4.04
1712 1939 4.069232 CTGCTCCCTTCACCGCGA 62.069 66.667 8.23 0.00 0.00 5.87
1763 1990 2.038813 TCACGATCCCTGCTCCCA 59.961 61.111 0.00 0.00 0.00 4.37
1765 1992 2.107953 GCTCACGATCCCTGCTCC 59.892 66.667 0.00 0.00 0.00 4.70
1805 2032 0.830648 GTTCACGATCCCTGATCCCA 59.169 55.000 0.00 0.00 35.83 4.37
1810 2037 2.279810 TGGCGTTCACGATCCCTGA 61.280 57.895 2.87 0.00 43.02 3.86
1812 2039 2.264794 GTGGCGTTCACGATCCCT 59.735 61.111 2.87 0.00 43.02 4.20
1813 2040 2.818274 GGTGGCGTTCACGATCCC 60.818 66.667 2.87 0.00 46.96 3.85
1814 2041 1.449601 ATGGTGGCGTTCACGATCC 60.450 57.895 2.87 2.60 46.96 3.36
1815 2042 4.201951 ATGGTGGCGTTCACGATC 57.798 55.556 2.87 0.00 46.96 3.69
1816 2043 1.809619 CGATGGTGGCGTTCACGAT 60.810 57.895 2.87 7.87 46.96 3.73
1817 2044 2.431771 CGATGGTGGCGTTCACGA 60.432 61.111 2.87 2.44 46.96 4.35
1818 2045 4.147322 GCGATGGTGGCGTTCACG 62.147 66.667 0.00 0.00 46.96 4.35
1826 2053 3.190849 CTGTGCTCGCGATGGTGG 61.191 66.667 10.36 0.00 0.00 4.61
1827 2054 2.433145 ACTGTGCTCGCGATGGTG 60.433 61.111 10.36 0.00 0.00 4.17
1828 2055 2.433145 CACTGTGCTCGCGATGGT 60.433 61.111 10.36 1.31 0.00 3.55
1829 2056 1.690283 CTTCACTGTGCTCGCGATGG 61.690 60.000 10.36 0.00 0.00 3.51
1830 2057 1.690283 CCTTCACTGTGCTCGCGATG 61.690 60.000 10.36 3.57 0.00 3.84
1831 2058 1.446792 CCTTCACTGTGCTCGCGAT 60.447 57.895 10.36 0.00 0.00 4.58
1832 2059 2.049156 CCTTCACTGTGCTCGCGA 60.049 61.111 9.26 9.26 0.00 5.87
1833 2060 3.114616 CCCTTCACTGTGCTCGCG 61.115 66.667 0.00 0.00 0.00 5.87
1834 2061 1.739562 CTCCCTTCACTGTGCTCGC 60.740 63.158 2.12 0.00 0.00 5.03
1835 2062 1.739562 GCTCCCTTCACTGTGCTCG 60.740 63.158 2.12 0.00 0.00 5.03
1836 2063 0.673022 CTGCTCCCTTCACTGTGCTC 60.673 60.000 2.12 0.00 0.00 4.26
1837 2064 1.374190 CTGCTCCCTTCACTGTGCT 59.626 57.895 2.12 0.00 0.00 4.40
1838 2065 1.673665 CCTGCTCCCTTCACTGTGC 60.674 63.158 2.12 0.00 0.00 4.57
1839 2066 1.002868 CCCTGCTCCCTTCACTGTG 60.003 63.158 0.17 0.17 0.00 3.66
1840 2067 0.548682 ATCCCTGCTCCCTTCACTGT 60.549 55.000 0.00 0.00 0.00 3.55
1841 2068 0.179936 GATCCCTGCTCCCTTCACTG 59.820 60.000 0.00 0.00 0.00 3.66
1842 2069 2.614001 GATCCCTGCTCCCTTCACT 58.386 57.895 0.00 0.00 0.00 3.41
2112 2339 2.038813 TCACGATCCCTGCTCCCA 59.961 61.111 0.00 0.00 0.00 4.37
2145 2372 2.821366 CTGCTCCCATCACGGTGC 60.821 66.667 2.51 0.00 41.74 5.01
2154 2381 2.038813 TCACGATCCCTGCTCCCA 59.961 61.111 0.00 0.00 0.00 4.37
2187 2414 1.214062 CTCACTCCTCTCACGGTGC 59.786 63.158 2.51 0.00 0.00 5.01
2196 2423 1.111277 GCTCCCTTCTCTCACTCCTC 58.889 60.000 0.00 0.00 0.00 3.71
2254 2481 0.716108 CTTTCAGCGTCACGATCACC 59.284 55.000 0.00 0.00 0.00 4.02
2748 2976 6.503524 AGAAATACAGAATTGTTTGCACGTT 58.496 32.000 0.00 0.00 38.76 3.99
2749 2977 6.072112 AGAAATACAGAATTGTTTGCACGT 57.928 33.333 0.00 0.00 38.76 4.49
2750 2978 7.201266 GCTTAGAAATACAGAATTGTTTGCACG 60.201 37.037 0.00 0.00 38.76 5.34
3090 3379 5.453567 AGTCAAGGTAGTTCAAATTTGCC 57.546 39.130 13.54 8.34 0.00 4.52
3152 3441 4.910195 AGACACCTGCATCAACTAAATGA 58.090 39.130 0.00 0.00 0.00 2.57
3164 3453 0.321671 GGCAAGACTAGACACCTGCA 59.678 55.000 0.00 0.00 0.00 4.41
3201 3490 5.704053 ACTAAAGGCGGCCAATAATATACAC 59.296 40.000 23.09 0.00 0.00 2.90
3312 3605 3.410960 GGAATGGCTCCTGATGGTC 57.589 57.895 0.00 0.00 41.61 4.02
3321 3617 3.558109 GGGAGCAAGTATAGGAATGGCTC 60.558 52.174 0.00 0.00 44.04 4.70
3397 3693 9.713740 GAGACATTCAAAACATCAGTGATTATC 57.286 33.333 1.86 0.00 0.00 1.75
3465 4179 2.928801 TCAGGTAGCTGAACTGCAAA 57.071 45.000 21.91 0.00 34.99 3.68
3565 4279 7.288810 ACAATGAATCTTAAAAGGAGCACAA 57.711 32.000 0.00 0.00 0.00 3.33
3773 4579 3.624410 TCAGACATGATTATGCAGCACAC 59.376 43.478 0.00 0.00 37.85 3.82
3778 4584 4.449131 AGTGGTCAGACATGATTATGCAG 58.551 43.478 0.00 0.00 37.87 4.41
3819 4625 0.249031 CATAGACACGCCGAGCATGA 60.249 55.000 0.00 0.00 0.00 3.07
3834 4640 1.409427 GGAGGAAGTCCACCGACATAG 59.591 57.143 0.00 0.00 46.10 2.23
3890 4696 6.407202 ACGAGATGCCAAGAAATAACTAACT 58.593 36.000 0.00 0.00 0.00 2.24
3924 4730 7.156673 AGAACAAAATACTTAGCACGGACTAA 58.843 34.615 0.00 0.00 0.00 2.24
3964 4773 8.049117 AGCCATAACTTGATTGAAGAATACAGA 58.951 33.333 0.00 0.00 35.42 3.41
4136 4946 2.236395 GGCCTCCTAACTTTCACTGCTA 59.764 50.000 0.00 0.00 0.00 3.49
4138 4948 1.271379 TGGCCTCCTAACTTTCACTGC 60.271 52.381 3.32 0.00 0.00 4.40
4261 5071 1.056700 ATGCGGTCAGGGCCTTCTAT 61.057 55.000 1.32 0.00 0.00 1.98
4495 5305 2.668212 TCCTTGGTTTGCTCGCCG 60.668 61.111 0.00 0.00 0.00 6.46
4536 5349 2.124403 GCCTGCAGGAGGATGTGG 60.124 66.667 37.21 7.81 46.33 4.17
4537 5350 1.748122 GTGCCTGCAGGAGGATGTG 60.748 63.158 37.21 7.51 46.33 3.21
4750 5572 0.651551 CCTCGTCGTCTCTAAGGTCG 59.348 60.000 0.00 0.00 0.00 4.79
4806 5628 4.728131 CACGATGTTTACCATATTTGCGTG 59.272 41.667 0.00 0.00 39.11 5.34
4827 5650 0.733150 GTTCAGAATAAGGGCCGCAC 59.267 55.000 0.00 0.00 0.00 5.34
4856 5696 3.918591 GCAAGCACATTGATCAAACAGAG 59.081 43.478 13.09 5.71 41.83 3.35
4864 5704 3.508762 CAAAGAGGCAAGCACATTGATC 58.491 45.455 0.00 0.00 41.83 2.92
4874 5714 1.736681 GTAGCTGAGCAAAGAGGCAAG 59.263 52.381 7.39 0.00 35.83 4.01
5000 5841 1.142531 CGGTAAGGTTAGGCCCGAC 59.857 63.158 0.00 0.00 41.08 4.79
5017 5858 5.517037 AGTGAAAAAGATTAGCGTCTTCG 57.483 39.130 3.16 0.00 37.46 3.79
5079 5921 6.036470 CAGTGAGAACATATACACACGTGAT 58.964 40.000 25.01 12.46 35.97 3.06
5193 6041 9.453572 AAAGATGATGAATAGCACAGAAGTAAA 57.546 29.630 0.00 0.00 0.00 2.01
5212 6066 4.071423 TGAGCAAAATCGGTGAAAGATGA 58.929 39.130 0.00 0.00 0.00 2.92
5321 6178 0.920763 ACTTCCTCCCATGCATCCCA 60.921 55.000 0.00 0.00 0.00 4.37
5361 6218 0.540365 TTCTCGGGGTAGAACACGGT 60.540 55.000 0.00 0.00 30.54 4.83
5473 6334 4.128925 TCTGAATATCACACTGGCAGTC 57.871 45.455 19.13 4.36 0.00 3.51
5478 6339 5.359756 TCCGAAATCTGAATATCACACTGG 58.640 41.667 0.00 0.00 0.00 4.00
5550 6414 5.963176 TTTACGGGTCGATGCAGTATATA 57.037 39.130 0.00 0.00 0.00 0.86
5576 6440 1.134965 CCAGACCTCGATCCAGTGTTC 60.135 57.143 0.00 0.00 0.00 3.18
5584 6457 2.990066 ATGGAAACCAGACCTCGATC 57.010 50.000 0.00 0.00 36.75 3.69
5585 6458 3.721087 AAATGGAAACCAGACCTCGAT 57.279 42.857 0.00 0.00 36.75 3.59
5676 6552 4.609301 TGTTAGATATTGGCAGGCCTTTT 58.391 39.130 0.00 0.00 36.94 2.27
5779 6675 8.102484 AGGGGCTAGAGTTAATCTCAAAATAA 57.898 34.615 0.00 0.00 44.98 1.40
5785 6681 5.405063 AGTAGGGGCTAGAGTTAATCTCA 57.595 43.478 0.00 0.00 44.98 3.27
5788 6684 5.776208 AGCTTAGTAGGGGCTAGAGTTAATC 59.224 44.000 0.00 0.00 34.31 1.75
5799 6695 1.202428 CGTTCTCAGCTTAGTAGGGGC 60.202 57.143 0.00 0.00 0.00 5.80
5819 6717 5.586243 TGGCATCAAATCAACTAAGCTCTAC 59.414 40.000 0.00 0.00 0.00 2.59
5820 6718 5.744171 TGGCATCAAATCAACTAAGCTCTA 58.256 37.500 0.00 0.00 0.00 2.43
5821 6719 4.592942 TGGCATCAAATCAACTAAGCTCT 58.407 39.130 0.00 0.00 0.00 4.09
5829 6727 7.830940 TGTCAAATATTGGCATCAAATCAAC 57.169 32.000 0.00 0.00 40.96 3.18
5840 6741 7.011295 CCAACAATTGGTATGTCAAATATTGGC 59.989 37.037 10.83 0.00 45.93 4.52
5903 6804 7.309194 GCTTTTTAAGAGGCTGATAAGAACCAA 60.309 37.037 0.00 0.00 0.00 3.67
5918 6819 4.925646 GTCCAAATGGCAGCTTTTTAAGAG 59.074 41.667 0.00 0.00 34.44 2.85
5923 6824 3.557228 TTGTCCAAATGGCAGCTTTTT 57.443 38.095 0.00 0.00 34.44 1.94
5965 6891 8.080417 CCATTCAAGCATCATATTCCACTTTAG 58.920 37.037 0.00 0.00 0.00 1.85
5967 6893 6.183360 CCCATTCAAGCATCATATTCCACTTT 60.183 38.462 0.00 0.00 0.00 2.66
5972 6898 4.219288 GGTCCCATTCAAGCATCATATTCC 59.781 45.833 0.00 0.00 0.00 3.01
5978 6904 1.341285 CCTGGTCCCATTCAAGCATCA 60.341 52.381 0.00 0.00 0.00 3.07
5989 6915 1.444933 AATTCACTCACCTGGTCCCA 58.555 50.000 0.00 0.00 0.00 4.37
5990 6916 2.162681 CAAATTCACTCACCTGGTCCC 58.837 52.381 0.00 0.00 0.00 4.46
5991 6917 1.541588 GCAAATTCACTCACCTGGTCC 59.458 52.381 0.00 0.00 0.00 4.46
5992 6918 2.227388 CAGCAAATTCACTCACCTGGTC 59.773 50.000 0.00 0.00 0.00 4.02
5993 6919 2.233271 CAGCAAATTCACTCACCTGGT 58.767 47.619 0.00 0.00 0.00 4.00
5994 6920 2.233271 ACAGCAAATTCACTCACCTGG 58.767 47.619 0.00 0.00 0.00 4.45
6038 6964 8.414778 CGATCTTGTCTACTACCCTAAAGAATT 58.585 37.037 0.00 0.00 0.00 2.17
6041 6967 6.318144 CACGATCTTGTCTACTACCCTAAAGA 59.682 42.308 0.00 0.00 0.00 2.52
6046 6972 2.688958 GCACGATCTTGTCTACTACCCT 59.311 50.000 0.73 0.00 0.00 4.34
6047 6973 2.541178 CGCACGATCTTGTCTACTACCC 60.541 54.545 0.73 0.00 0.00 3.69
6070 7101 6.038161 TGACCAAAGATTCAATACTTATGCCG 59.962 38.462 0.00 0.00 0.00 5.69
6087 7118 2.301346 AGCAAGGTTCAGTGACCAAAG 58.699 47.619 12.45 4.91 42.35 2.77
6112 7143 2.435586 CTCGAGGCTTGCACTGGG 60.436 66.667 3.91 0.00 0.00 4.45
6127 7158 6.709643 CATAGAACATTTGATGTCGGAACTC 58.290 40.000 0.00 0.00 44.07 3.01
6134 7165 5.953183 TGTTGGCATAGAACATTTGATGTC 58.047 37.500 0.00 0.00 44.07 3.06
6146 7177 5.162637 ACCCCTTCTATATGTTGGCATAGA 58.837 41.667 0.00 0.00 40.51 1.98
6160 7191 3.244582 TGTTGCAGTAGAACCCCTTCTA 58.755 45.455 0.00 0.00 37.87 2.10
6162 7193 2.561478 TGTTGCAGTAGAACCCCTTC 57.439 50.000 0.00 0.00 0.00 3.46
6163 7194 3.074538 AGATTGTTGCAGTAGAACCCCTT 59.925 43.478 0.00 0.00 0.00 3.95
6165 7196 2.749621 CAGATTGTTGCAGTAGAACCCC 59.250 50.000 0.00 0.00 0.00 4.95
6166 7197 2.162408 GCAGATTGTTGCAGTAGAACCC 59.838 50.000 0.00 0.00 43.53 4.11
6200 7231 3.563808 TGTAACACCACAATCTTGAGCAC 59.436 43.478 0.00 0.00 0.00 4.40
6205 7236 6.381801 GGAATTCTGTAACACCACAATCTTG 58.618 40.000 5.23 0.00 0.00 3.02
6213 7244 4.020573 ACTCATCGGAATTCTGTAACACCA 60.021 41.667 13.95 0.00 0.00 4.17
6214 7245 4.330074 CACTCATCGGAATTCTGTAACACC 59.670 45.833 13.95 0.00 0.00 4.16
6271 7302 8.090214 ACAAGCAAGCATAATTACTGATGTTTT 58.910 29.630 0.00 0.00 0.00 2.43
6362 7400 5.385617 CAGTTATTGGAAGCTCGAAACAAG 58.614 41.667 0.00 0.00 0.00 3.16
6389 7427 5.789643 ATGTTATTTCTGCCACTTGTGTT 57.210 34.783 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.