Multiple sequence alignment - TraesCS5B01G367200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G367200 chr5B 100.000 4580 0 0 1 4580 545816415 545820994 0.000000e+00 8458.0
1 TraesCS5B01G367200 chr5B 79.020 510 91 14 3080 3582 546151568 546151068 7.340000e-88 335.0
2 TraesCS5B01G367200 chr5D 91.985 1647 114 12 2009 3655 446876965 446875337 0.000000e+00 2294.0
3 TraesCS5B01G367200 chr5D 92.717 1016 41 8 1 1007 446879004 446878013 0.000000e+00 1435.0
4 TraesCS5B01G367200 chr5D 92.400 829 51 6 1148 1976 446878013 446877197 0.000000e+00 1171.0
5 TraesCS5B01G367200 chr5D 84.201 1057 157 7 2366 3420 447388098 447387050 0.000000e+00 1018.0
6 TraesCS5B01G367200 chr5D 81.327 1221 209 14 2368 3582 447304753 447303546 0.000000e+00 974.0
7 TraesCS5B01G367200 chr5D 91.770 486 39 1 3850 4335 446875345 446874861 0.000000e+00 675.0
8 TraesCS5B01G367200 chr5D 89.175 194 14 3 2018 2211 446877197 446877011 7.660000e-58 235.0
9 TraesCS5B01G367200 chr5D 82.545 275 36 5 4316 4580 446874848 446874576 9.910000e-57 231.0
10 TraesCS5B01G367200 chr5D 83.916 143 21 2 3652 3794 390353362 390353222 7.990000e-28 135.0
11 TraesCS5B01G367200 chr6B 86.851 1232 156 4 2366 3596 5838148 5839374 0.000000e+00 1373.0
12 TraesCS5B01G367200 chr6B 72.811 982 191 39 1030 1958 5836062 5837020 9.770000e-67 265.0
13 TraesCS5B01G367200 chr6B 100.000 28 0 0 1463 1490 36773450 36773423 8.000000e-03 52.8
14 TraesCS5B01G367200 chr6D 83.751 1157 174 10 2312 3462 21078508 21079656 0.000000e+00 1083.0
15 TraesCS5B01G367200 chr6D 77.711 332 58 8 1025 1348 21077242 21077565 6.050000e-44 189.0
16 TraesCS5B01G367200 chr6D 83.226 155 22 4 3642 3795 10400969 10400818 6.180000e-29 139.0
17 TraesCS5B01G367200 chr6D 88.406 69 8 0 1890 1958 21078146 21078214 2.940000e-12 84.2
18 TraesCS5B01G367200 chr4D 82.486 1239 206 8 2361 3595 1667078 1668309 0.000000e+00 1075.0
19 TraesCS5B01G367200 chr4D 83.228 1103 172 9 2341 3438 2999472 3000566 0.000000e+00 1000.0
20 TraesCS5B01G367200 chr4D 75.504 347 65 13 1025 1361 2990090 2990426 7.940000e-33 152.0
21 TraesCS5B01G367200 chr4D 92.105 76 6 0 1882 1957 1666573 1666648 1.740000e-19 108.0
22 TraesCS5B01G367200 chr4D 82.031 128 21 2 3652 3779 505974821 505974696 1.740000e-19 108.0
23 TraesCS5B01G367200 chr4D 94.340 53 3 0 1906 1958 2991004 2991056 1.060000e-11 82.4
24 TraesCS5B01G367200 chr4A 82.120 1236 209 6 2364 3595 603036958 603038185 0.000000e+00 1048.0
25 TraesCS5B01G367200 chrUn 83.181 1094 171 10 2350 3440 47479207 47480290 0.000000e+00 989.0
26 TraesCS5B01G367200 chr3D 81.270 1228 211 11 2362 3582 567742550 567741335 0.000000e+00 976.0
27 TraesCS5B01G367200 chr3D 84.810 158 21 3 3652 3809 27888486 27888640 6.140000e-34 156.0
28 TraesCS5B01G367200 chr4B 77.660 376 71 7 947 1317 7883177 7883544 2.770000e-52 217.0
29 TraesCS5B01G367200 chr4B 79.259 135 21 4 6 140 7882647 7882774 2.270000e-13 87.9
30 TraesCS5B01G367200 chr7D 81.048 248 37 7 1092 1337 1754132 1753893 6.050000e-44 189.0
31 TraesCS5B01G367200 chr7D 84.242 165 22 4 3648 3812 14255470 14255310 1.710000e-34 158.0
32 TraesCS5B01G367200 chr2B 84.337 166 22 4 3644 3809 138965763 138965602 4.740000e-35 159.0
33 TraesCS5B01G367200 chr1B 81.871 171 27 4 3639 3809 102141560 102141726 1.720000e-29 141.0
34 TraesCS5B01G367200 chr1B 100.000 30 0 0 1463 1492 583405605 583405576 6.400000e-04 56.5
35 TraesCS5B01G367200 chr1D 81.325 166 26 5 3644 3809 231024272 231024432 3.720000e-26 130.0
36 TraesCS5B01G367200 chr1D 100.000 30 0 0 1463 1492 431968681 431968652 6.400000e-04 56.5
37 TraesCS5B01G367200 chr2D 82.906 117 17 3 3647 3763 639748784 639748671 8.110000e-18 102.0
38 TraesCS5B01G367200 chr1A 100.000 30 0 0 1463 1492 530523527 530523498 6.400000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G367200 chr5B 545816415 545820994 4579 False 8458.000000 8458 100.000000 1 4580 1 chr5B.!!$F1 4579
1 TraesCS5B01G367200 chr5B 546151068 546151568 500 True 335.000000 335 79.020000 3080 3582 1 chr5B.!!$R1 502
2 TraesCS5B01G367200 chr5D 447387050 447388098 1048 True 1018.000000 1018 84.201000 2366 3420 1 chr5D.!!$R3 1054
3 TraesCS5B01G367200 chr5D 446874576 446879004 4428 True 1006.833333 2294 90.098667 1 4580 6 chr5D.!!$R4 4579
4 TraesCS5B01G367200 chr5D 447303546 447304753 1207 True 974.000000 974 81.327000 2368 3582 1 chr5D.!!$R2 1214
5 TraesCS5B01G367200 chr6B 5836062 5839374 3312 False 819.000000 1373 79.831000 1030 3596 2 chr6B.!!$F1 2566
6 TraesCS5B01G367200 chr6D 21077242 21079656 2414 False 452.066667 1083 83.289333 1025 3462 3 chr6D.!!$F1 2437
7 TraesCS5B01G367200 chr4D 2999472 3000566 1094 False 1000.000000 1000 83.228000 2341 3438 1 chr4D.!!$F1 1097
8 TraesCS5B01G367200 chr4D 1666573 1668309 1736 False 591.500000 1075 87.295500 1882 3595 2 chr4D.!!$F2 1713
9 TraesCS5B01G367200 chr4A 603036958 603038185 1227 False 1048.000000 1048 82.120000 2364 3595 1 chr4A.!!$F1 1231
10 TraesCS5B01G367200 chrUn 47479207 47480290 1083 False 989.000000 989 83.181000 2350 3440 1 chrUn.!!$F1 1090
11 TraesCS5B01G367200 chr3D 567741335 567742550 1215 True 976.000000 976 81.270000 2362 3582 1 chr3D.!!$R1 1220

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
865 869 0.179137 TCGTTCACTAGCATCGCTGG 60.179 55.0 0.00 0.0 42.85 4.85 F
1270 1293 0.108138 GGAGGTCGTCAACATCTGGG 60.108 60.0 0.00 0.0 38.72 4.45 F
1320 1343 0.394762 ACGGAGTGCATGCCATGAAT 60.395 50.0 16.68 0.0 42.51 2.57 F
2241 3282 0.459585 CGGCGGCTGCTTTAAGTCTA 60.460 55.0 18.85 0.0 42.25 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2348 3440 0.250338 ACCCAAGCGACCTGAGAAAC 60.250 55.0 0.00 0.0 0.00 2.78 R
2567 3665 1.305930 GGTGGCCTTTTGTAGCTCCG 61.306 60.0 3.32 0.0 0.00 4.63 R
3299 4401 0.320374 CACTTCGTTACCTGCCTCCA 59.680 55.0 0.00 0.0 0.00 3.86 R
3839 4941 0.109532 TCAGTGATTCACCCCGCAAA 59.890 50.0 13.14 0.0 34.49 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 8.695456 TGTGATACATTAACAATAGAGCTCTCA 58.305 33.333 22.17 7.44 0.00 3.27
108 109 5.181056 TCGCATATCATTTTTATCACCGCAT 59.819 36.000 0.00 0.00 0.00 4.73
119 120 3.475494 ACCGCATCATGGCCGGTA 61.475 61.111 18.94 0.00 38.35 4.02
138 139 3.056891 GGTACAACCACATTTCACATGGG 60.057 47.826 0.00 0.00 38.42 4.00
216 217 6.929606 GTCTATTTTTGCTACCCGATGACTAT 59.070 38.462 0.00 0.00 0.00 2.12
230 231 6.773685 CCCGATGACTATAAAAATTAACCCCA 59.226 38.462 0.00 0.00 0.00 4.96
257 258 2.151502 TGTGTTTGACCCCAACACAT 57.848 45.000 13.28 0.00 38.31 3.21
327 328 4.588899 AGCAATGCTATTTCTACACACCA 58.411 39.130 5.69 0.00 36.99 4.17
331 332 6.546395 CAATGCTATTTCTACACACCAGTTC 58.454 40.000 0.00 0.00 0.00 3.01
346 347 8.241367 ACACACCAGTTCTACAAAAAGTTTTAG 58.759 33.333 0.24 0.00 0.00 1.85
396 397 6.651086 AGCTAAAAATCAGGGGAGTAGTTAC 58.349 40.000 0.00 0.00 0.00 2.50
423 424 6.832520 TGGGAACACACTAGTACGTAAATA 57.167 37.500 0.00 0.00 33.40 1.40
510 511 9.667107 TGTAGCCATATAAGTATTTCATTAGCC 57.333 33.333 0.00 0.00 0.00 3.93
523 524 3.606687 TCATTAGCCGAGAAAAAGTCCC 58.393 45.455 0.00 0.00 0.00 4.46
561 562 6.005823 TGCCTCTTTCTCAATTTCTCATCAA 58.994 36.000 0.00 0.00 0.00 2.57
563 564 6.805760 GCCTCTTTCTCAATTTCTCATCAAAC 59.194 38.462 0.00 0.00 0.00 2.93
576 577 3.659786 TCATCAAACGTCGGAAATGACT 58.340 40.909 0.00 0.00 36.71 3.41
590 591 4.699257 GGAAATGACTCAGCAGAACTCATT 59.301 41.667 6.07 6.07 34.79 2.57
670 671 6.053632 ACTTGATGATGGACACATACAGAA 57.946 37.500 0.00 0.00 37.47 3.02
671 672 6.656902 ACTTGATGATGGACACATACAGAAT 58.343 36.000 0.00 0.00 37.47 2.40
672 673 6.765036 ACTTGATGATGGACACATACAGAATC 59.235 38.462 0.00 0.00 37.47 2.52
673 674 6.490241 TGATGATGGACACATACAGAATCT 57.510 37.500 0.00 0.00 37.47 2.40
674 675 6.892485 TGATGATGGACACATACAGAATCTT 58.108 36.000 0.00 0.00 37.47 2.40
675 676 7.341030 TGATGATGGACACATACAGAATCTTT 58.659 34.615 0.00 0.00 37.47 2.52
676 677 7.830697 TGATGATGGACACATACAGAATCTTTT 59.169 33.333 0.00 0.00 37.47 2.27
677 678 8.585471 ATGATGGACACATACAGAATCTTTTT 57.415 30.769 0.00 0.00 37.47 1.94
678 679 8.044060 TGATGGACACATACAGAATCTTTTTC 57.956 34.615 0.00 0.00 37.47 2.29
679 680 6.817765 TGGACACATACAGAATCTTTTTCC 57.182 37.500 0.00 0.00 0.00 3.13
680 681 5.710099 TGGACACATACAGAATCTTTTTCCC 59.290 40.000 0.00 0.00 0.00 3.97
681 682 5.710099 GGACACATACAGAATCTTTTTCCCA 59.290 40.000 0.00 0.00 0.00 4.37
682 683 6.127897 GGACACATACAGAATCTTTTTCCCAG 60.128 42.308 0.00 0.00 0.00 4.45
683 684 6.542821 ACACATACAGAATCTTTTTCCCAGA 58.457 36.000 0.00 0.00 0.00 3.86
684 685 7.004086 ACACATACAGAATCTTTTTCCCAGAA 58.996 34.615 0.00 0.00 0.00 3.02
727 728 9.346725 GGTTAAAGAAATCACTAATTGCTTGAG 57.653 33.333 0.00 0.00 41.65 3.02
744 745 5.767665 TGCTTGAGCCTGTAAAGTAATGAAA 59.232 36.000 0.00 0.00 41.18 2.69
745 746 6.086871 GCTTGAGCCTGTAAAGTAATGAAAC 58.913 40.000 0.00 0.00 34.31 2.78
746 747 5.856126 TGAGCCTGTAAAGTAATGAAACG 57.144 39.130 0.00 0.00 0.00 3.60
747 748 4.693566 TGAGCCTGTAAAGTAATGAAACGG 59.306 41.667 0.00 0.00 0.00 4.44
748 749 4.648651 AGCCTGTAAAGTAATGAAACGGT 58.351 39.130 0.00 0.00 0.00 4.83
749 750 4.454504 AGCCTGTAAAGTAATGAAACGGTG 59.545 41.667 0.00 0.00 0.00 4.94
803 807 5.450453 TGTTTGAGGGAGTGGAACAAAATA 58.550 37.500 0.00 0.00 44.16 1.40
859 863 5.393896 GGGTACTAGTTTCGTTCACTAGCAT 60.394 44.000 0.00 3.91 45.35 3.79
864 868 1.629013 TTCGTTCACTAGCATCGCTG 58.371 50.000 0.00 0.00 40.10 5.18
865 869 0.179137 TCGTTCACTAGCATCGCTGG 60.179 55.000 0.00 0.00 42.85 4.85
866 870 0.179137 CGTTCACTAGCATCGCTGGA 60.179 55.000 6.33 0.00 39.54 3.86
896 906 4.974438 ACCAGGTTGGCTCCCCGA 62.974 66.667 0.00 0.00 42.67 5.14
913 923 6.183360 GCTCCCCGAAGTACTATATATTGGAG 60.183 46.154 13.89 13.89 37.99 3.86
918 928 7.393796 CCCGAAGTACTATATATTGGAGACACT 59.606 40.741 0.00 0.00 42.67 3.55
919 929 9.445878 CCGAAGTACTATATATTGGAGACACTA 57.554 37.037 0.00 0.00 42.67 2.74
931 941 5.755409 TGGAGACACTAAAATTGGCTAGA 57.245 39.130 0.00 0.00 30.01 2.43
971 981 4.788925 AGCTAGAGGTACACAGAGAGAT 57.211 45.455 0.00 0.00 0.00 2.75
980 990 4.034279 GGTACACAGAGAGATACAGTCGAC 59.966 50.000 7.70 7.70 0.00 4.20
1003 1013 1.882912 TCTCCATATTGCCGTCATGC 58.117 50.000 0.00 0.00 0.00 4.06
1006 1016 2.998670 CTCCATATTGCCGTCATGCTAG 59.001 50.000 0.00 0.00 0.00 3.42
1007 1017 2.368548 TCCATATTGCCGTCATGCTAGT 59.631 45.455 0.00 0.00 0.00 2.57
1008 1018 2.738846 CCATATTGCCGTCATGCTAGTC 59.261 50.000 0.00 0.00 0.00 2.59
1009 1019 3.392882 CATATTGCCGTCATGCTAGTCA 58.607 45.455 0.00 0.00 0.00 3.41
1010 1020 1.945387 ATTGCCGTCATGCTAGTCAG 58.055 50.000 0.00 0.00 0.00 3.51
1020 1030 1.666580 GCTAGTCAGCCGGGTATCC 59.333 63.158 5.47 0.00 42.37 2.59
1021 1031 1.817911 GCTAGTCAGCCGGGTATCCC 61.818 65.000 5.47 0.00 42.37 3.85
1022 1032 0.178958 CTAGTCAGCCGGGTATCCCT 60.179 60.000 5.47 2.14 42.67 4.20
1023 1033 0.263765 TAGTCAGCCGGGTATCCCTT 59.736 55.000 5.47 0.00 42.67 3.95
1057 1067 4.819761 TGCTGATCTCGGTGCCGC 62.820 66.667 5.64 0.00 39.59 6.53
1076 1089 3.532155 GGTCGCCGGAGATCTGCT 61.532 66.667 12.23 0.00 0.00 4.24
1079 1092 2.279120 CGCCGGAGATCTGCTGAC 60.279 66.667 5.05 0.62 0.00 3.51
1080 1093 2.895680 GCCGGAGATCTGCTGACA 59.104 61.111 5.05 0.00 0.00 3.58
1188 1208 2.383527 GCCCGAGTTCAAGCTCACG 61.384 63.158 0.00 0.00 35.33 4.35
1268 1291 2.455674 TTGGAGGTCGTCAACATCTG 57.544 50.000 0.00 0.00 38.72 2.90
1270 1293 0.108138 GGAGGTCGTCAACATCTGGG 60.108 60.000 0.00 0.00 38.72 4.45
1281 1304 4.021016 GTCAACATCTGGGTAGAGAACAGT 60.021 45.833 0.00 0.00 36.14 3.55
1320 1343 0.394762 ACGGAGTGCATGCCATGAAT 60.395 50.000 16.68 0.00 42.51 2.57
1377 1409 2.513897 GCCGGTCTGCCATACACC 60.514 66.667 1.90 0.00 34.09 4.16
1425 1463 0.620556 TCCTCTTGGGGTGCAATCTC 59.379 55.000 0.00 0.00 35.33 2.75
1521 1565 3.071602 CGGAAAGGATGGACTGGTATGAT 59.928 47.826 0.00 0.00 0.00 2.45
1528 1572 6.025539 AGGATGGACTGGTATGATGCTTATA 58.974 40.000 0.00 0.00 0.00 0.98
1573 1623 4.530857 GCCTGTCGTCCATCCCCG 62.531 72.222 0.00 0.00 0.00 5.73
1574 1624 4.530857 CCTGTCGTCCATCCCCGC 62.531 72.222 0.00 0.00 0.00 6.13
1575 1625 3.461773 CTGTCGTCCATCCCCGCT 61.462 66.667 0.00 0.00 0.00 5.52
1614 1676 1.079503 GAGTGGAGCTTAAACGGCTG 58.920 55.000 0.00 0.00 40.40 4.85
1659 1721 2.594303 CAAGCCGACCAAGTGCCA 60.594 61.111 0.00 0.00 0.00 4.92
1693 1755 2.328099 GCTGAGACGGGCTGGTTTG 61.328 63.158 0.00 0.00 0.00 2.93
1696 1758 1.371558 GAGACGGGCTGGTTTGACT 59.628 57.895 0.00 0.00 0.00 3.41
1697 1759 0.670854 GAGACGGGCTGGTTTGACTC 60.671 60.000 0.00 0.00 0.00 3.36
1701 1763 1.072505 GGGCTGGTTTGACTCGGAA 59.927 57.895 0.00 0.00 0.00 4.30
1711 1773 2.163818 TGACTCGGAATTGTCCACAC 57.836 50.000 0.00 0.00 45.26 3.82
1727 1789 2.357465 CCACACATCTGATGGACCCAAT 60.357 50.000 20.83 0.00 35.33 3.16
1757 1834 3.368571 GCACAAGACCAGGCTGCC 61.369 66.667 11.65 11.65 0.00 4.85
1836 1928 4.106925 GGTGAGGCAGCCTGGAGG 62.107 72.222 22.26 0.00 31.76 4.30
1960 2287 4.876701 GCGGATGCCAAGGTATGA 57.123 55.556 0.00 0.00 33.98 2.15
1964 2291 1.267806 CGGATGCCAAGGTATGAATGC 59.732 52.381 0.00 0.00 0.00 3.56
1968 2295 1.409790 TGCCAAGGTATGAATGCATGC 59.590 47.619 11.82 11.82 35.94 4.06
1971 2298 2.358582 CCAAGGTATGAATGCATGCGAA 59.641 45.455 14.09 0.00 37.92 4.70
1973 2300 3.698029 AGGTATGAATGCATGCGAAAC 57.302 42.857 14.09 5.18 37.92 2.78
1983 2535 7.732315 ATGAATGCATGCGAAACATTTGTTTTT 60.732 29.630 14.09 0.00 39.64 1.94
2015 2799 7.042791 GGAAGGATGTTGTTGTTGTTGTTATTG 60.043 37.037 0.00 0.00 0.00 1.90
2041 3079 9.130312 GTTGTTGTTGTTGTTCATAAAACTACA 57.870 29.630 1.95 1.95 39.24 2.74
2174 3215 1.379576 CGAGGAACTACCCGGGACT 60.380 63.158 32.02 14.63 41.55 3.85
2241 3282 0.459585 CGGCGGCTGCTTTAAGTCTA 60.460 55.000 18.85 0.00 42.25 2.59
2242 3283 1.806623 CGGCGGCTGCTTTAAGTCTAT 60.807 52.381 18.85 0.00 42.25 1.98
2243 3284 2.545113 CGGCGGCTGCTTTAAGTCTATA 60.545 50.000 18.85 0.00 42.25 1.31
2271 3355 4.456911 CACAGGTATGCAACAACTGAGAAT 59.543 41.667 20.23 0.00 33.57 2.40
2278 3362 4.300803 TGCAACAACTGAGAATTTCATGC 58.699 39.130 0.00 0.00 37.34 4.06
2348 3440 8.351495 AGCAGTTAAACAAATGTTGTGTATTG 57.649 30.769 0.00 0.00 44.59 1.90
2373 3471 3.516300 TCTCAGGTCGCTTGGGTTTAATA 59.484 43.478 0.00 0.00 0.00 0.98
2383 3481 5.804979 CGCTTGGGTTTAATAATTGGTCTTG 59.195 40.000 0.00 0.00 0.00 3.02
2386 3484 6.672266 TGGGTTTAATAATTGGTCTTGCAA 57.328 33.333 0.00 0.00 0.00 4.08
2418 3516 4.586841 GGCCCATGCATTATACTTTTGGTA 59.413 41.667 0.00 0.00 40.13 3.25
2467 3565 1.600916 GAGCAACGCAAGGGGAAGT 60.601 57.895 0.00 0.00 46.39 3.01
2567 3665 6.959671 CGAGAGGATGATAATTCCTTTAGC 57.040 41.667 0.00 0.00 43.75 3.09
2655 3753 5.301805 CACTGTTTACAAGGGGATTTTGTCT 59.698 40.000 0.00 0.00 39.36 3.41
2656 3754 5.535030 ACTGTTTACAAGGGGATTTTGTCTC 59.465 40.000 0.00 0.00 39.36 3.36
3018 4116 3.754965 TGCCTTGATAGCAAAAGTGTCT 58.245 40.909 0.00 0.00 37.28 3.41
3228 4329 3.488778 AGATCATCTGAAGGTGATGGC 57.511 47.619 10.78 0.00 41.01 4.40
3299 4401 9.877178 CAAGATACTAGATCCACAAGTTTTAGT 57.123 33.333 0.00 0.00 0.00 2.24
3431 4533 2.818169 AAGCACCCAAGGAGCGTGA 61.818 57.895 0.00 0.00 43.81 4.35
3449 4551 1.285667 TGACATGGGTGATCTGCCAAT 59.714 47.619 0.00 1.05 0.00 3.16
3567 4669 5.409826 AGAAGAGTTTATTTTGTCTGCGAGG 59.590 40.000 0.00 0.00 0.00 4.63
3584 4686 2.296792 GAGGTACCCTCGGTAGTTCTC 58.703 57.143 8.74 0.00 41.08 2.87
3585 4687 1.921748 AGGTACCCTCGGTAGTTCTCT 59.078 52.381 8.74 0.00 39.02 3.10
3586 4688 2.311243 AGGTACCCTCGGTAGTTCTCTT 59.689 50.000 8.74 0.00 39.02 2.85
3599 4701 5.050023 GGTAGTTCTCTTTTGCTTGTGACTC 60.050 44.000 0.00 0.00 0.00 3.36
3600 4702 4.517285 AGTTCTCTTTTGCTTGTGACTCA 58.483 39.130 0.00 0.00 0.00 3.41
3601 4703 4.333926 AGTTCTCTTTTGCTTGTGACTCAC 59.666 41.667 1.86 1.86 34.56 3.51
3604 4706 4.572389 TCTCTTTTGCTTGTGACTCACTTC 59.428 41.667 10.54 0.85 35.11 3.01
3608 4710 6.542005 TCTTTTGCTTGTGACTCACTTCATTA 59.458 34.615 10.54 0.00 35.11 1.90
3613 4715 8.389779 TGCTTGTGACTCACTTCATTAATTTA 57.610 30.769 10.54 0.00 35.11 1.40
3617 4719 8.777865 TGTGACTCACTTCATTAATTTAGGAG 57.222 34.615 10.54 0.00 35.11 3.69
3645 4747 8.623903 CAATCCTGCTGTTATTGTTACATGTAT 58.376 33.333 6.36 0.00 0.00 2.29
3646 4748 9.845740 AATCCTGCTGTTATTGTTACATGTATA 57.154 29.630 6.36 0.00 0.00 1.47
3647 4749 9.845740 ATCCTGCTGTTATTGTTACATGTATAA 57.154 29.630 6.36 6.01 0.00 0.98
3648 4750 9.845740 TCCTGCTGTTATTGTTACATGTATAAT 57.154 29.630 6.36 12.52 0.00 1.28
3691 4793 6.324522 GCTATAGCGTCACTAATAGCAATG 57.675 41.667 9.40 0.00 37.61 2.82
3692 4794 5.220303 GCTATAGCGTCACTAATAGCAATGC 60.220 44.000 9.40 0.00 37.61 3.56
3693 4795 2.213499 AGCGTCACTAATAGCAATGCC 58.787 47.619 0.00 0.00 0.00 4.40
3694 4796 1.939934 GCGTCACTAATAGCAATGCCA 59.060 47.619 0.00 0.00 0.00 4.92
3695 4797 2.549754 GCGTCACTAATAGCAATGCCAT 59.450 45.455 0.00 0.00 0.00 4.40
3696 4798 3.745975 GCGTCACTAATAGCAATGCCATA 59.254 43.478 0.00 0.00 0.00 2.74
3697 4799 4.143030 GCGTCACTAATAGCAATGCCATAG 60.143 45.833 0.00 4.85 0.00 2.23
3698 4800 4.991056 CGTCACTAATAGCAATGCCATAGT 59.009 41.667 0.00 5.51 0.00 2.12
3699 4801 5.107337 CGTCACTAATAGCAATGCCATAGTG 60.107 44.000 24.40 24.40 39.04 2.74
3700 4802 5.760253 GTCACTAATAGCAATGCCATAGTGT 59.240 40.000 26.78 10.45 38.90 3.55
3701 4803 6.929049 GTCACTAATAGCAATGCCATAGTGTA 59.071 38.462 26.78 17.72 38.90 2.90
3702 4804 7.604164 GTCACTAATAGCAATGCCATAGTGTAT 59.396 37.037 26.78 8.24 38.90 2.29
3703 4805 8.811994 TCACTAATAGCAATGCCATAGTGTATA 58.188 33.333 26.78 14.95 38.90 1.47
3704 4806 9.091784 CACTAATAGCAATGCCATAGTGTATAG 57.908 37.037 23.12 9.22 36.09 1.31
3705 4807 9.035890 ACTAATAGCAATGCCATAGTGTATAGA 57.964 33.333 12.36 0.00 0.00 1.98
3706 4808 9.526713 CTAATAGCAATGCCATAGTGTATAGAG 57.473 37.037 0.00 0.00 0.00 2.43
3707 4809 7.724490 ATAGCAATGCCATAGTGTATAGAGA 57.276 36.000 0.00 0.00 0.00 3.10
3708 4810 6.425210 AGCAATGCCATAGTGTATAGAGAA 57.575 37.500 0.00 0.00 0.00 2.87
3709 4811 7.013823 AGCAATGCCATAGTGTATAGAGAAT 57.986 36.000 0.00 0.00 0.00 2.40
3710 4812 7.456725 AGCAATGCCATAGTGTATAGAGAATT 58.543 34.615 0.00 0.00 0.00 2.17
3711 4813 7.941238 AGCAATGCCATAGTGTATAGAGAATTT 59.059 33.333 0.00 0.00 0.00 1.82
3712 4814 8.233190 GCAATGCCATAGTGTATAGAGAATTTC 58.767 37.037 0.00 0.00 0.00 2.17
3713 4815 8.725148 CAATGCCATAGTGTATAGAGAATTTCC 58.275 37.037 0.00 0.00 0.00 3.13
3714 4816 6.455647 TGCCATAGTGTATAGAGAATTTCCG 58.544 40.000 0.00 0.00 0.00 4.30
3715 4817 5.348997 GCCATAGTGTATAGAGAATTTCCGC 59.651 44.000 0.00 0.00 0.00 5.54
3716 4818 5.573282 CCATAGTGTATAGAGAATTTCCGCG 59.427 44.000 0.00 0.00 0.00 6.46
3717 4819 3.381949 AGTGTATAGAGAATTTCCGCGC 58.618 45.455 0.00 0.00 0.00 6.86
3718 4820 3.068307 AGTGTATAGAGAATTTCCGCGCT 59.932 43.478 5.56 0.00 0.00 5.92
3719 4821 4.277672 AGTGTATAGAGAATTTCCGCGCTA 59.722 41.667 5.56 0.00 0.00 4.26
3720 4822 4.980434 GTGTATAGAGAATTTCCGCGCTAA 59.020 41.667 5.56 0.00 0.00 3.09
3721 4823 5.461078 GTGTATAGAGAATTTCCGCGCTAAA 59.539 40.000 5.56 6.54 0.00 1.85
3722 4824 6.145696 GTGTATAGAGAATTTCCGCGCTAAAT 59.854 38.462 5.56 8.80 0.00 1.40
3723 4825 6.704493 TGTATAGAGAATTTCCGCGCTAAATT 59.296 34.615 22.57 22.57 38.82 1.82
3724 4826 4.278678 AGAGAATTTCCGCGCTAAATTG 57.721 40.909 25.60 3.26 36.82 2.32
3725 4827 2.783832 GAGAATTTCCGCGCTAAATTGC 59.216 45.455 25.60 18.67 36.82 3.56
3726 4828 2.423538 AGAATTTCCGCGCTAAATTGCT 59.576 40.909 25.60 19.93 36.82 3.91
3727 4829 2.475200 ATTTCCGCGCTAAATTGCTC 57.525 45.000 5.56 0.00 0.00 4.26
3728 4830 0.096281 TTTCCGCGCTAAATTGCTCG 59.904 50.000 5.56 0.00 40.32 5.03
3730 4832 3.089784 CGCGCTAAATTGCTCGGT 58.910 55.556 5.56 0.00 37.49 4.69
3731 4833 1.012234 CGCGCTAAATTGCTCGGTC 60.012 57.895 5.56 0.00 37.49 4.79
3732 4834 1.421410 CGCGCTAAATTGCTCGGTCT 61.421 55.000 5.56 0.00 37.49 3.85
3733 4835 1.567504 GCGCTAAATTGCTCGGTCTA 58.432 50.000 0.00 0.00 0.00 2.59
3734 4836 1.258197 GCGCTAAATTGCTCGGTCTAC 59.742 52.381 0.00 0.00 0.00 2.59
3735 4837 2.536365 CGCTAAATTGCTCGGTCTACA 58.464 47.619 0.00 0.00 0.00 2.74
3736 4838 2.927477 CGCTAAATTGCTCGGTCTACAA 59.073 45.455 0.00 0.00 0.00 2.41
3737 4839 3.555956 CGCTAAATTGCTCGGTCTACAAT 59.444 43.478 0.00 0.00 35.59 2.71
3738 4840 4.550831 CGCTAAATTGCTCGGTCTACAATG 60.551 45.833 0.00 0.00 34.38 2.82
3739 4841 4.332819 GCTAAATTGCTCGGTCTACAATGT 59.667 41.667 0.00 0.00 34.38 2.71
3740 4842 4.946784 AAATTGCTCGGTCTACAATGTC 57.053 40.909 0.00 0.00 34.38 3.06
3741 4843 3.895232 ATTGCTCGGTCTACAATGTCT 57.105 42.857 0.00 0.00 32.94 3.41
3742 4844 2.941453 TGCTCGGTCTACAATGTCTC 57.059 50.000 0.00 0.00 0.00 3.36
3743 4845 1.132453 TGCTCGGTCTACAATGTCTCG 59.868 52.381 0.00 0.00 0.00 4.04
3744 4846 1.828832 CTCGGTCTACAATGTCTCGC 58.171 55.000 0.00 0.00 0.00 5.03
3745 4847 1.402259 CTCGGTCTACAATGTCTCGCT 59.598 52.381 0.00 0.00 0.00 4.93
3746 4848 2.612672 CTCGGTCTACAATGTCTCGCTA 59.387 50.000 0.00 0.00 0.00 4.26
3747 4849 3.011818 TCGGTCTACAATGTCTCGCTAA 58.988 45.455 0.00 0.00 0.00 3.09
3748 4850 3.630769 TCGGTCTACAATGTCTCGCTAAT 59.369 43.478 0.00 0.00 0.00 1.73
3749 4851 4.818005 TCGGTCTACAATGTCTCGCTAATA 59.182 41.667 0.00 0.00 0.00 0.98
3750 4852 5.049612 TCGGTCTACAATGTCTCGCTAATAG 60.050 44.000 0.00 0.00 0.00 1.73
3751 4853 4.918583 GGTCTACAATGTCTCGCTAATAGC 59.081 45.833 1.41 1.41 38.02 2.97
3752 4854 5.507482 GGTCTACAATGTCTCGCTAATAGCA 60.507 44.000 13.15 0.00 42.58 3.49
3753 4855 5.977725 GTCTACAATGTCTCGCTAATAGCAA 59.022 40.000 13.15 0.00 42.58 3.91
3754 4856 6.642950 GTCTACAATGTCTCGCTAATAGCAAT 59.357 38.462 13.15 0.00 42.58 3.56
3755 4857 5.663795 ACAATGTCTCGCTAATAGCAATG 57.336 39.130 13.15 1.79 42.58 2.82
3756 4858 4.024556 ACAATGTCTCGCTAATAGCAATGC 60.025 41.667 13.15 0.00 42.58 3.56
3757 4859 3.459232 TGTCTCGCTAATAGCAATGCT 57.541 42.857 13.92 13.92 42.58 3.79
3758 4860 4.584327 TGTCTCGCTAATAGCAATGCTA 57.416 40.909 17.97 17.97 45.55 3.49
3766 4868 3.532896 TAGCAATGCTATAGCCCGC 57.467 52.632 21.84 19.47 40.44 6.13
3767 4869 0.976641 TAGCAATGCTATAGCCCGCT 59.023 50.000 26.19 26.19 40.44 5.52
3768 4870 0.976641 AGCAATGCTATAGCCCGCTA 59.023 50.000 23.51 7.38 36.99 4.26
3769 4871 1.556911 AGCAATGCTATAGCCCGCTAT 59.443 47.619 23.51 13.46 41.58 2.97
3770 4872 2.766263 AGCAATGCTATAGCCCGCTATA 59.234 45.455 23.51 14.20 39.65 1.31
3775 4877 2.476873 CTATAGCCCGCTATAGCACG 57.523 55.000 23.85 13.71 46.26 5.34
3776 4878 1.743958 CTATAGCCCGCTATAGCACGT 59.256 52.381 23.85 8.13 46.26 4.49
3777 4879 0.966920 ATAGCCCGCTATAGCACGTT 59.033 50.000 23.99 12.97 42.21 3.99
3778 4880 1.608055 TAGCCCGCTATAGCACGTTA 58.392 50.000 23.99 12.03 42.21 3.18
3779 4881 0.748450 AGCCCGCTATAGCACGTTAA 59.252 50.000 23.99 0.00 42.21 2.01
3780 4882 1.343465 AGCCCGCTATAGCACGTTAAT 59.657 47.619 23.99 0.67 42.21 1.40
3781 4883 2.559668 AGCCCGCTATAGCACGTTAATA 59.440 45.455 23.99 0.00 42.21 0.98
3782 4884 2.921754 GCCCGCTATAGCACGTTAATAG 59.078 50.000 23.99 4.67 42.21 1.73
3783 4885 2.921754 CCCGCTATAGCACGTTAATAGC 59.078 50.000 23.99 17.57 42.95 2.97
3784 4886 3.571571 CCGCTATAGCACGTTAATAGCA 58.428 45.455 23.99 3.15 45.41 3.49
3785 4887 4.174009 CCGCTATAGCACGTTAATAGCAT 58.826 43.478 23.99 8.64 45.41 3.79
3786 4888 5.337554 CCGCTATAGCACGTTAATAGCATA 58.662 41.667 23.99 9.13 45.41 3.14
3787 4889 5.977725 CCGCTATAGCACGTTAATAGCATAT 59.022 40.000 23.99 10.74 45.41 1.78
3788 4890 6.475727 CCGCTATAGCACGTTAATAGCATATT 59.524 38.462 23.99 0.00 45.41 1.28
3789 4891 7.010183 CCGCTATAGCACGTTAATAGCATATTT 59.990 37.037 23.99 0.00 45.41 1.40
3790 4892 8.380644 CGCTATAGCACGTTAATAGCATATTTT 58.619 33.333 23.99 0.00 45.41 1.82
3795 4897 7.871853 AGCACGTTAATAGCATATTTTTAGGG 58.128 34.615 0.00 0.00 0.00 3.53
3796 4898 7.717875 AGCACGTTAATAGCATATTTTTAGGGA 59.282 33.333 0.00 0.00 0.00 4.20
3797 4899 7.801783 GCACGTTAATAGCATATTTTTAGGGAC 59.198 37.037 0.00 0.00 0.00 4.46
3798 4900 8.832521 CACGTTAATAGCATATTTTTAGGGACA 58.167 33.333 0.00 0.00 0.00 4.02
3799 4901 9.398538 ACGTTAATAGCATATTTTTAGGGACAA 57.601 29.630 0.00 0.00 0.00 3.18
3800 4902 9.659830 CGTTAATAGCATATTTTTAGGGACAAC 57.340 33.333 0.00 0.00 0.00 3.32
3801 4903 9.659830 GTTAATAGCATATTTTTAGGGACAACG 57.340 33.333 0.00 0.00 0.00 4.10
3802 4904 4.632538 AGCATATTTTTAGGGACAACGC 57.367 40.909 0.00 0.00 0.00 4.84
3803 4905 4.270008 AGCATATTTTTAGGGACAACGCT 58.730 39.130 0.00 0.00 41.97 5.07
3804 4906 5.433526 AGCATATTTTTAGGGACAACGCTA 58.566 37.500 0.00 0.00 39.88 4.26
3805 4907 6.062095 AGCATATTTTTAGGGACAACGCTAT 58.938 36.000 0.00 0.00 40.34 2.97
3806 4908 6.546034 AGCATATTTTTAGGGACAACGCTATT 59.454 34.615 0.00 0.00 40.34 1.73
3807 4909 7.068226 AGCATATTTTTAGGGACAACGCTATTT 59.932 33.333 0.00 0.00 40.34 1.40
3808 4910 7.704899 GCATATTTTTAGGGACAACGCTATTTT 59.295 33.333 0.00 0.00 40.34 1.82
3809 4911 9.233232 CATATTTTTAGGGACAACGCTATTTTC 57.767 33.333 0.00 0.00 40.34 2.29
3810 4912 6.887626 TTTTTAGGGACAACGCTATTTTCT 57.112 33.333 0.00 0.00 40.34 2.52
3811 4913 6.887626 TTTTAGGGACAACGCTATTTTCTT 57.112 33.333 0.00 0.00 40.34 2.52
3812 4914 6.490566 TTTAGGGACAACGCTATTTTCTTC 57.509 37.500 0.00 0.00 40.34 2.87
3813 4915 3.344515 AGGGACAACGCTATTTTCTTCC 58.655 45.455 0.00 0.00 37.53 3.46
3814 4916 3.009143 AGGGACAACGCTATTTTCTTCCT 59.991 43.478 0.00 0.00 37.53 3.36
3815 4917 3.756963 GGGACAACGCTATTTTCTTCCTT 59.243 43.478 0.00 0.00 0.00 3.36
3816 4918 4.379499 GGGACAACGCTATTTTCTTCCTTG 60.379 45.833 0.00 0.00 0.00 3.61
3817 4919 4.379499 GGACAACGCTATTTTCTTCCTTGG 60.379 45.833 0.00 0.00 0.00 3.61
3818 4920 4.142038 ACAACGCTATTTTCTTCCTTGGT 58.858 39.130 0.00 0.00 0.00 3.67
3819 4921 5.310451 ACAACGCTATTTTCTTCCTTGGTA 58.690 37.500 0.00 0.00 0.00 3.25
3820 4922 5.411669 ACAACGCTATTTTCTTCCTTGGTAG 59.588 40.000 0.00 0.00 0.00 3.18
3821 4923 5.416271 ACGCTATTTTCTTCCTTGGTAGA 57.584 39.130 0.00 0.00 0.00 2.59
3822 4924 5.801380 ACGCTATTTTCTTCCTTGGTAGAA 58.199 37.500 4.89 4.89 0.00 2.10
3823 4925 6.415573 ACGCTATTTTCTTCCTTGGTAGAAT 58.584 36.000 9.06 0.07 31.00 2.40
3824 4926 6.539103 ACGCTATTTTCTTCCTTGGTAGAATC 59.461 38.462 9.06 0.00 31.00 2.52
3825 4927 6.538742 CGCTATTTTCTTCCTTGGTAGAATCA 59.461 38.462 9.06 1.67 31.00 2.57
3826 4928 7.466050 CGCTATTTTCTTCCTTGGTAGAATCAC 60.466 40.741 9.06 0.00 31.00 3.06
3827 4929 7.554476 GCTATTTTCTTCCTTGGTAGAATCACT 59.446 37.037 9.06 0.00 31.00 3.41
3828 4930 7.693969 ATTTTCTTCCTTGGTAGAATCACTG 57.306 36.000 9.06 0.00 31.00 3.66
3829 4931 6.433847 TTTCTTCCTTGGTAGAATCACTGA 57.566 37.500 9.06 0.00 31.00 3.41
3830 4932 6.627087 TTCTTCCTTGGTAGAATCACTGAT 57.373 37.500 4.89 0.00 0.00 2.90
3831 4933 6.627087 TCTTCCTTGGTAGAATCACTGATT 57.373 37.500 3.80 3.80 34.71 2.57
3832 4934 6.644347 TCTTCCTTGGTAGAATCACTGATTC 58.356 40.000 20.14 20.14 46.05 2.52
3884 4986 9.683069 ATTCAGTTTGTGATTTGTATGAAGAAC 57.317 29.630 0.00 0.00 34.17 3.01
3886 4988 8.128582 TCAGTTTGTGATTTGTATGAAGAACAC 58.871 33.333 0.00 0.00 0.00 3.32
3892 4994 7.224949 TGTGATTTGTATGAAGAACACGTGTTA 59.775 33.333 32.39 18.30 38.56 2.41
3908 5010 9.872757 AACACGTGTTAAACTCTTGTATATTTG 57.127 29.630 31.49 0.00 36.32 2.32
3936 5038 9.520204 TGTGTCTATATGCATCATTATATGTCG 57.480 33.333 0.19 0.00 0.00 4.35
3953 5055 2.679336 TGTCGATTCTGGACATGCATTG 59.321 45.455 0.00 0.00 39.36 2.82
3997 5099 5.817816 CCTCTTTCTCAACCGCTTATGTAAT 59.182 40.000 0.00 0.00 0.00 1.89
4088 5190 3.629398 GCAGATTACATGTGCCTAAGCTT 59.371 43.478 9.11 3.48 43.11 3.74
4100 5202 6.707290 TGTGCCTAAGCTTTGAAGACTAATA 58.293 36.000 3.20 0.00 40.80 0.98
4125 5227 8.125728 ACGCACCATTTATATTTTGTATTTGC 57.874 30.769 0.00 0.00 0.00 3.68
4134 5236 3.552604 TTTTGTATTTGCGACAGCCTC 57.447 42.857 0.00 0.00 44.33 4.70
4195 5297 8.092687 GGTTAGTTTGTATGTCTGACTTCCTTA 58.907 37.037 9.51 0.00 0.00 2.69
4196 5298 9.485206 GTTAGTTTGTATGTCTGACTTCCTTAA 57.515 33.333 9.51 0.00 0.00 1.85
4199 5301 7.607991 AGTTTGTATGTCTGACTTCCTTAATGG 59.392 37.037 9.51 0.00 37.10 3.16
4216 5318 4.644103 AATGGCAAAATCGAATCTCCTG 57.356 40.909 0.00 0.00 0.00 3.86
4217 5319 2.368439 TGGCAAAATCGAATCTCCTGG 58.632 47.619 0.00 0.00 0.00 4.45
4219 5321 2.356069 GGCAAAATCGAATCTCCTGGAC 59.644 50.000 0.00 0.00 0.00 4.02
4222 5324 4.816385 GCAAAATCGAATCTCCTGGACATA 59.184 41.667 0.00 0.00 0.00 2.29
4223 5325 5.277538 GCAAAATCGAATCTCCTGGACATAC 60.278 44.000 0.00 0.00 0.00 2.39
4231 5333 2.890474 CTGGACATACGCACCCGC 60.890 66.667 0.00 0.00 38.22 6.13
4246 5348 2.812619 CCGCTCCTTGATCTCCCCC 61.813 68.421 0.00 0.00 0.00 5.40
4279 5381 2.672961 TCTTCTCCATACGCCACAAG 57.327 50.000 0.00 0.00 0.00 3.16
4280 5382 2.176045 TCTTCTCCATACGCCACAAGA 58.824 47.619 0.00 0.00 0.00 3.02
4295 5397 4.156556 GCCACAAGAAGTCTGCATCAATAA 59.843 41.667 0.00 0.00 0.00 1.40
4306 5408 8.604640 AGTCTGCATCAATAATACAGATTCTG 57.395 34.615 12.17 12.17 39.44 3.02
4318 5420 4.453480 ACAGATTCTGTTTGGAGGGAAA 57.547 40.909 13.61 0.00 42.59 3.13
4331 5465 4.222336 TGGAGGGAAAATCAACACAACAT 58.778 39.130 0.00 0.00 0.00 2.71
4332 5466 4.653341 TGGAGGGAAAATCAACACAACATT 59.347 37.500 0.00 0.00 0.00 2.71
4337 5471 6.048509 GGGAAAATCAACACAACATTTCACT 58.951 36.000 0.00 0.00 29.79 3.41
4380 5514 7.714813 AGGACCAAAAATTCAAAACAAGTATGG 59.285 33.333 0.00 0.00 0.00 2.74
4387 5521 8.851541 AAATTCAAAACAAGTATGGATGCAAT 57.148 26.923 0.00 0.00 0.00 3.56
4388 5522 9.941325 AAATTCAAAACAAGTATGGATGCAATA 57.059 25.926 0.00 0.00 0.00 1.90
4433 5567 3.387397 GTGCTTTACGGTACACTTCACT 58.613 45.455 0.00 0.00 0.00 3.41
4437 5571 4.801891 CTTTACGGTACACTTCACTAGCA 58.198 43.478 0.00 0.00 0.00 3.49
4442 5576 4.461781 ACGGTACACTTCACTAGCACTAAT 59.538 41.667 0.00 0.00 0.00 1.73
4460 5594 6.226787 CACTAATAGTAAGGGCATCTCCAAG 58.773 44.000 0.00 0.00 36.21 3.61
4462 5596 0.548510 AGTAAGGGCATCTCCAAGGC 59.451 55.000 0.00 0.00 36.21 4.35
4467 5601 1.530183 GGCATCTCCAAGGCCATCC 60.530 63.158 5.01 0.00 46.92 3.51
4468 5602 1.895707 GCATCTCCAAGGCCATCCG 60.896 63.158 5.01 0.00 37.47 4.18
4477 5611 1.067516 CAAGGCCATCCGCTAAAATGG 59.932 52.381 5.01 0.00 44.42 3.16
4499 5633 0.390735 ACACTATTTGTCCGCGGACC 60.391 55.000 45.59 31.25 43.97 4.46
4500 5634 0.390603 CACTATTTGTCCGCGGACCA 60.391 55.000 45.59 36.96 43.97 4.02
4503 5637 1.330521 CTATTTGTCCGCGGACCAATG 59.669 52.381 44.07 34.20 43.97 2.82
4504 5638 1.933115 ATTTGTCCGCGGACCAATGC 61.933 55.000 40.86 25.64 43.97 3.56
4505 5639 3.834013 TTGTCCGCGGACCAATGCA 62.834 57.895 45.59 29.07 43.97 3.96
4506 5640 3.799755 GTCCGCGGACCAATGCAC 61.800 66.667 41.88 19.72 39.08 4.57
4508 5642 3.361158 CCGCGGACCAATGCACAA 61.361 61.111 24.07 0.00 0.00 3.33
4509 5643 2.642129 CGCGGACCAATGCACAAA 59.358 55.556 0.00 0.00 0.00 2.83
4514 5658 2.287909 GCGGACCAATGCACAAAAACTA 60.288 45.455 0.00 0.00 0.00 2.24
4525 5669 4.822896 TGCACAAAAACTAATACGGGAGTT 59.177 37.500 0.00 0.00 43.33 3.01
4526 5670 5.151389 GCACAAAAACTAATACGGGAGTTG 58.849 41.667 0.00 0.00 43.33 3.16
4529 5673 3.994931 AAACTAATACGGGAGTTGGCT 57.005 42.857 0.00 0.00 43.33 4.75
4531 5675 4.397481 AACTAATACGGGAGTTGGCTAC 57.603 45.455 0.00 0.00 43.33 3.58
4533 5677 1.575419 AATACGGGAGTTGGCTACCA 58.425 50.000 0.00 0.00 46.45 3.25
4538 5682 0.111639 GGGAGTTGGCTACCAAACCA 59.888 55.000 18.82 0.00 45.73 3.67
4554 5698 4.141959 CCAAACCACATCCCATAAATGTCC 60.142 45.833 0.00 0.00 35.19 4.02
4565 5709 0.693622 TAAATGTCCGCCCAAGTCCA 59.306 50.000 0.00 0.00 0.00 4.02
4567 5711 1.488705 AATGTCCGCCCAAGTCCAGA 61.489 55.000 0.00 0.00 0.00 3.86
4568 5712 2.047179 GTCCGCCCAAGTCCAGAC 60.047 66.667 0.00 0.00 0.00 3.51
4574 5718 1.068333 CGCCCAAGTCCAGACAATTTG 60.068 52.381 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.885009 AATGTATCACATGGATTGAATCACA 57.115 32.000 7.56 3.40 37.97 3.58
108 109 1.003112 GTGGTTGTACCGGCCATGA 60.003 57.895 0.00 0.00 42.58 3.07
119 120 2.364970 CACCCATGTGAAATGTGGTTGT 59.635 45.455 0.00 0.00 45.76 3.32
138 139 1.337260 CCACAGAGACAGCCTGTACAC 60.337 57.143 0.00 0.00 42.44 2.90
216 217 8.871125 ACACATGTAACATGGGGTTAATTTTTA 58.129 29.630 0.00 0.00 43.30 1.52
230 231 3.838565 TGGGGTCAAACACATGTAACAT 58.161 40.909 0.00 0.00 0.00 2.71
257 258 8.154203 TCTTGACTTCAAATACATGGAGTGTTA 58.846 33.333 0.00 0.00 39.30 2.41
327 328 7.640597 AGTGCCTAAAACTTTTTGTAGAACT 57.359 32.000 0.00 0.00 0.00 3.01
331 332 8.617809 TGAACTAGTGCCTAAAACTTTTTGTAG 58.382 33.333 0.00 0.00 0.00 2.74
346 347 4.513442 TGTCACCATAATGAACTAGTGCC 58.487 43.478 0.00 0.00 0.00 5.01
382 383 1.687123 CCATCCGTAACTACTCCCCTG 59.313 57.143 0.00 0.00 0.00 4.45
396 397 2.479049 CGTACTAGTGTGTTCCCATCCG 60.479 54.545 5.39 0.00 0.00 4.18
523 524 3.183793 AGAGGCAAGGCAAAAGTTTTG 57.816 42.857 21.60 21.60 0.00 2.44
561 562 1.270094 TGCTGAGTCATTTCCGACGTT 60.270 47.619 0.00 0.00 40.98 3.99
563 564 0.994995 CTGCTGAGTCATTTCCGACG 59.005 55.000 0.00 0.00 40.98 5.12
576 577 7.607607 TCAAGCTAATAAAATGAGTTCTGCTGA 59.392 33.333 0.00 0.00 0.00 4.26
590 591 8.491134 TGGAGGCTAATACTTCAAGCTAATAAA 58.509 33.333 0.00 0.00 36.48 1.40
670 671 5.089434 AGCCAAAGATTCTGGGAAAAAGAT 58.911 37.500 8.44 0.00 34.25 2.40
671 672 4.482990 AGCCAAAGATTCTGGGAAAAAGA 58.517 39.130 8.44 0.00 34.25 2.52
672 673 4.879197 AGCCAAAGATTCTGGGAAAAAG 57.121 40.909 8.44 0.00 34.25 2.27
673 674 5.337491 GCATAGCCAAAGATTCTGGGAAAAA 60.337 40.000 8.44 0.00 34.25 1.94
674 675 4.160252 GCATAGCCAAAGATTCTGGGAAAA 59.840 41.667 8.44 0.00 34.25 2.29
675 676 3.701040 GCATAGCCAAAGATTCTGGGAAA 59.299 43.478 8.44 0.00 34.25 3.13
676 677 3.290710 GCATAGCCAAAGATTCTGGGAA 58.709 45.455 8.44 0.00 34.25 3.97
677 678 2.241941 TGCATAGCCAAAGATTCTGGGA 59.758 45.455 8.44 0.00 34.25 4.37
678 679 2.658285 TGCATAGCCAAAGATTCTGGG 58.342 47.619 1.21 1.21 34.25 4.45
679 680 4.500887 CCAATGCATAGCCAAAGATTCTGG 60.501 45.833 0.00 0.00 36.99 3.86
680 681 4.098960 ACCAATGCATAGCCAAAGATTCTG 59.901 41.667 0.00 0.00 0.00 3.02
681 682 4.284178 ACCAATGCATAGCCAAAGATTCT 58.716 39.130 0.00 0.00 0.00 2.40
682 683 4.660789 ACCAATGCATAGCCAAAGATTC 57.339 40.909 0.00 0.00 0.00 2.52
683 684 6.543430 TTAACCAATGCATAGCCAAAGATT 57.457 33.333 0.00 0.00 0.00 2.40
684 685 6.380846 TCTTTAACCAATGCATAGCCAAAGAT 59.619 34.615 0.00 0.00 0.00 2.40
727 728 4.214758 ACACCGTTTCATTACTTTACAGGC 59.785 41.667 0.00 0.00 0.00 4.85
744 745 3.199071 TCCATCCTAAAAGCATACACCGT 59.801 43.478 0.00 0.00 0.00 4.83
745 746 3.560068 GTCCATCCTAAAAGCATACACCG 59.440 47.826 0.00 0.00 0.00 4.94
746 747 3.560068 CGTCCATCCTAAAAGCATACACC 59.440 47.826 0.00 0.00 0.00 4.16
747 748 4.439057 TCGTCCATCCTAAAAGCATACAC 58.561 43.478 0.00 0.00 0.00 2.90
748 749 4.161565 ACTCGTCCATCCTAAAAGCATACA 59.838 41.667 0.00 0.00 0.00 2.29
749 750 4.694339 ACTCGTCCATCCTAAAAGCATAC 58.306 43.478 0.00 0.00 0.00 2.39
878 882 4.410400 CGGGGAGCCAACCTGGTC 62.410 72.222 0.00 0.00 40.46 4.02
913 923 6.425417 GCCTAGATCTAGCCAATTTTAGTGTC 59.575 42.308 22.33 0.39 31.95 3.67
918 928 7.179338 CCTAGAGCCTAGATCTAGCCAATTTTA 59.821 40.741 22.33 8.23 44.37 1.52
919 929 5.903198 AGAGCCTAGATCTAGCCAATTTT 57.097 39.130 22.33 0.00 31.95 1.82
931 941 2.883888 GCTAGCTGCCTAGAGCCTAGAT 60.884 54.545 7.70 4.64 43.07 1.98
942 952 1.215673 TGTACCTCTAGCTAGCTGCCT 59.784 52.381 27.68 3.12 44.23 4.75
943 953 1.338655 GTGTACCTCTAGCTAGCTGCC 59.661 57.143 27.68 7.22 44.23 4.85
944 954 2.025155 TGTGTACCTCTAGCTAGCTGC 58.975 52.381 27.68 3.94 43.29 5.25
945 955 3.546724 TCTGTGTACCTCTAGCTAGCTG 58.453 50.000 27.68 16.48 0.00 4.24
971 981 2.454336 ATGGAGATGGGTCGACTGTA 57.546 50.000 16.46 2.38 0.00 2.74
980 990 1.072173 TGACGGCAATATGGAGATGGG 59.928 52.381 0.00 0.00 0.00 4.00
1068 1081 1.134580 CCAATCGGTGTCAGCAGATCT 60.135 52.381 2.47 0.00 0.00 2.75
1073 1086 2.359850 GCCCAATCGGTGTCAGCA 60.360 61.111 2.47 0.00 0.00 4.41
1076 1089 2.359850 GCAGCCCAATCGGTGTCA 60.360 61.111 0.00 0.00 0.00 3.58
1079 1092 4.776322 TCGGCAGCCCAATCGGTG 62.776 66.667 5.63 0.00 0.00 4.94
1080 1093 4.028490 TTCGGCAGCCCAATCGGT 62.028 61.111 5.63 0.00 0.00 4.69
1188 1208 2.954753 CTTGCTTCCACGGTCGCAC 61.955 63.158 2.37 0.00 31.24 5.34
1268 1291 2.541178 CGCATCGTACTGTTCTCTACCC 60.541 54.545 0.00 0.00 0.00 3.69
1270 1293 2.110226 GCGCATCGTACTGTTCTCTAC 58.890 52.381 0.30 0.00 0.00 2.59
1366 1398 3.483954 CCAAGAGGGTGTATGGCAG 57.516 57.895 0.00 0.00 0.00 4.85
1377 1409 1.580066 TTATGCCCCACCCCAAGAGG 61.580 60.000 0.00 0.00 0.00 3.69
1425 1463 2.818714 CTCAGCAGCTTCGCCTGG 60.819 66.667 0.00 0.00 33.44 4.45
1500 1538 4.392940 CATCATACCAGTCCATCCTTTCC 58.607 47.826 0.00 0.00 0.00 3.13
1521 1565 2.643551 GAGCAGGGCTTGTTATAAGCA 58.356 47.619 15.13 0.00 44.71 3.91
1528 1572 0.396974 TTGTTGGAGCAGGGCTTGTT 60.397 50.000 0.00 0.00 39.88 2.83
1573 1623 0.319555 TAGAATGCGTCGCCCATAGC 60.320 55.000 15.88 0.00 38.52 2.97
1574 1624 1.419374 GTAGAATGCGTCGCCCATAG 58.581 55.000 15.88 0.00 0.00 2.23
1575 1625 0.318360 CGTAGAATGCGTCGCCCATA 60.318 55.000 15.88 0.00 40.12 2.74
1614 1676 2.610859 TCTGGAAGGCCCCTGTCC 60.611 66.667 0.00 1.73 0.00 4.02
1650 1712 2.281070 ACGCTCACTGGCACTTGG 60.281 61.111 0.00 0.00 0.00 3.61
1651 1713 2.941333 CACGCTCACTGGCACTTG 59.059 61.111 0.00 0.00 0.00 3.16
1652 1714 2.974698 GCACGCTCACTGGCACTT 60.975 61.111 0.00 0.00 0.00 3.16
1693 1755 2.163818 TGTGTGGACAATTCCGAGTC 57.836 50.000 0.00 0.00 46.37 3.36
1696 1758 2.301583 TCAGATGTGTGGACAATTCCGA 59.698 45.455 0.00 0.00 46.37 4.55
1697 1759 2.698803 TCAGATGTGTGGACAATTCCG 58.301 47.619 0.00 0.00 46.37 4.30
1711 1773 0.949397 CGCATTGGGTCCATCAGATG 59.051 55.000 3.04 3.04 0.00 2.90
1743 1805 4.335647 ACCGGCAGCCTGGTCTTG 62.336 66.667 18.94 0.00 31.16 3.02
1765 1842 0.991920 ACCACCCAACGGAGAATCAT 59.008 50.000 0.00 0.00 36.25 2.45
1801 1878 6.296432 GCCTCACCAGGGTATTTCATATCATA 60.296 42.308 0.00 0.00 40.75 2.15
1960 2287 5.421212 AAAACAAATGTTTCGCATGCATT 57.579 30.435 19.57 6.43 46.47 3.56
1983 2535 7.176589 ACAACAACAACATCCTTCCTTAAAA 57.823 32.000 0.00 0.00 0.00 1.52
1985 2537 6.153680 ACAACAACAACAACATCCTTCCTTAA 59.846 34.615 0.00 0.00 0.00 1.85
1990 2542 7.491048 ACAATAACAACAACAACAACATCCTTC 59.509 33.333 0.00 0.00 0.00 3.46
1991 2543 7.327214 ACAATAACAACAACAACAACATCCTT 58.673 30.769 0.00 0.00 0.00 3.36
1992 2544 6.872920 ACAATAACAACAACAACAACATCCT 58.127 32.000 0.00 0.00 0.00 3.24
1993 2545 7.064016 ACAACAATAACAACAACAACAACATCC 59.936 33.333 0.00 0.00 0.00 3.51
1994 2546 7.958674 ACAACAATAACAACAACAACAACATC 58.041 30.769 0.00 0.00 0.00 3.06
1995 2547 7.897575 ACAACAATAACAACAACAACAACAT 57.102 28.000 0.00 0.00 0.00 2.71
1997 2549 7.568433 ACAACAACAATAACAACAACAACAAC 58.432 30.769 0.00 0.00 0.00 3.32
1998 2550 7.715265 ACAACAACAATAACAACAACAACAA 57.285 28.000 0.00 0.00 0.00 2.83
1999 2551 7.224753 ACAACAACAACAATAACAACAACAACA 59.775 29.630 0.00 0.00 0.00 3.33
2001 2553 7.715265 ACAACAACAACAATAACAACAACAA 57.285 28.000 0.00 0.00 0.00 2.83
2002 2554 7.224753 ACAACAACAACAACAATAACAACAACA 59.775 29.630 0.00 0.00 0.00 3.33
2003 2555 7.568433 ACAACAACAACAACAATAACAACAAC 58.432 30.769 0.00 0.00 0.00 3.32
2005 2557 7.438160 TGAACAACAACAACAACAATAACAACA 59.562 29.630 0.00 0.00 0.00 3.33
2015 2799 9.130312 TGTAGTTTTATGAACAACAACAACAAC 57.870 29.630 0.00 0.00 0.00 3.32
2149 3190 0.896226 GGGTAGTTCCTCGCAGTCTT 59.104 55.000 0.00 0.00 36.25 3.01
2241 3282 7.609918 TCAGTTGTTGCATACCTGTGTTTATAT 59.390 33.333 0.00 0.00 0.00 0.86
2242 3283 6.937465 TCAGTTGTTGCATACCTGTGTTTATA 59.063 34.615 0.00 0.00 0.00 0.98
2243 3284 5.767665 TCAGTTGTTGCATACCTGTGTTTAT 59.232 36.000 0.00 0.00 0.00 1.40
2271 3355 8.359642 GGTATGCCTGAAATAATTAGCATGAAA 58.640 33.333 14.55 0.00 40.87 2.69
2278 3362 8.408043 TTGGATGGTATGCCTGAAATAATTAG 57.592 34.615 0.16 0.00 35.27 1.73
2348 3440 0.250338 ACCCAAGCGACCTGAGAAAC 60.250 55.000 0.00 0.00 0.00 2.78
2373 3471 3.127548 CACTAGCGATTGCAAGACCAATT 59.872 43.478 7.90 0.00 46.23 2.32
2383 3481 1.526917 ATGGGCCACTAGCGATTGC 60.527 57.895 9.28 0.00 45.17 3.56
2386 3484 2.060567 ATGCATGGGCCACTAGCGAT 62.061 55.000 9.28 7.38 45.17 4.58
2418 3516 5.130477 ACGGATTATGAGGATTGTACCAAGT 59.870 40.000 0.00 0.00 0.00 3.16
2467 3565 5.657474 ACTAAAGAACTTGTGTCTCAACGA 58.343 37.500 0.00 0.00 32.18 3.85
2544 3642 5.574830 CGCTAAAGGAATTATCATCCTCTCG 59.425 44.000 0.00 0.00 46.65 4.04
2567 3665 1.305930 GGTGGCCTTTTGTAGCTCCG 61.306 60.000 3.32 0.00 0.00 4.63
2655 3753 1.965930 GGCCACGACATGCAAGTGA 60.966 57.895 14.81 0.00 38.06 3.41
2656 3754 1.588824 ATGGCCACGACATGCAAGTG 61.589 55.000 8.16 3.67 35.79 3.16
2764 3862 2.497273 GGCAACAACCATGGAGCTTTAT 59.503 45.455 21.47 0.00 32.88 1.40
3018 4116 2.859165 ACCTCGAAGCTCCAAAATCA 57.141 45.000 0.00 0.00 0.00 2.57
3228 4329 3.713858 TCAACAAACTGCATGACAAGG 57.286 42.857 0.00 0.00 0.00 3.61
3299 4401 0.320374 CACTTCGTTACCTGCCTCCA 59.680 55.000 0.00 0.00 0.00 3.86
3391 4493 0.990374 AGAGCTTCCAGTGCCATCTT 59.010 50.000 0.00 0.00 0.00 2.40
3431 4533 2.779430 TCTATTGGCAGATCACCCATGT 59.221 45.455 5.33 1.67 0.00 3.21
3449 4551 7.333423 CCACGTATTTCCTGTCATCTTTTTCTA 59.667 37.037 0.00 0.00 0.00 2.10
3471 4573 1.031571 ATGCATAACCCACTGCCACG 61.032 55.000 0.00 0.00 37.59 4.94
3567 4669 4.492611 CAAAAGAGAACTACCGAGGGTAC 58.507 47.826 0.00 0.00 37.09 3.34
3582 4684 4.333649 TGAAGTGAGTCACAAGCAAAAGAG 59.666 41.667 24.73 0.00 36.74 2.85
3584 4686 4.621068 TGAAGTGAGTCACAAGCAAAAG 57.379 40.909 24.73 0.00 36.74 2.27
3585 4687 5.581126 AATGAAGTGAGTCACAAGCAAAA 57.419 34.783 24.73 3.97 36.74 2.44
3586 4688 6.691754 TTAATGAAGTGAGTCACAAGCAAA 57.308 33.333 24.73 9.03 36.74 3.68
3599 4701 7.428826 GGATTGCCTCCTAAATTAATGAAGTG 58.571 38.462 0.00 0.00 41.29 3.16
3600 4702 7.588497 GGATTGCCTCCTAAATTAATGAAGT 57.412 36.000 0.00 0.00 41.29 3.01
3668 4770 5.220303 GCATTGCTATTAGTGACGCTATAGC 60.220 44.000 15.09 15.09 37.34 2.97
3669 4771 5.289675 GGCATTGCTATTAGTGACGCTATAG 59.710 44.000 8.82 0.00 0.00 1.31
3670 4772 5.168569 GGCATTGCTATTAGTGACGCTATA 58.831 41.667 8.82 0.00 0.00 1.31
3671 4773 3.997021 GGCATTGCTATTAGTGACGCTAT 59.003 43.478 8.82 0.00 0.00 2.97
3672 4774 3.181470 TGGCATTGCTATTAGTGACGCTA 60.181 43.478 8.82 0.00 0.00 4.26
3673 4775 2.213499 GGCATTGCTATTAGTGACGCT 58.787 47.619 8.82 0.00 0.00 5.07
3674 4776 1.939934 TGGCATTGCTATTAGTGACGC 59.060 47.619 8.82 0.00 0.00 5.19
3675 4777 4.991056 ACTATGGCATTGCTATTAGTGACG 59.009 41.667 13.00 0.00 31.02 4.35
3676 4778 5.760253 ACACTATGGCATTGCTATTAGTGAC 59.240 40.000 30.38 9.66 36.17 3.67
3677 4779 5.928976 ACACTATGGCATTGCTATTAGTGA 58.071 37.500 30.38 11.44 36.17 3.41
3678 4780 7.912056 ATACACTATGGCATTGCTATTAGTG 57.088 36.000 26.35 26.35 37.27 2.74
3679 4781 9.035890 TCTATACACTATGGCATTGCTATTAGT 57.964 33.333 13.00 11.60 31.02 2.24
3680 4782 9.526713 CTCTATACACTATGGCATTGCTATTAG 57.473 37.037 13.00 11.04 31.02 1.73
3681 4783 9.255029 TCTCTATACACTATGGCATTGCTATTA 57.745 33.333 13.00 0.00 31.02 0.98
3682 4784 8.138928 TCTCTATACACTATGGCATTGCTATT 57.861 34.615 13.00 0.00 31.02 1.73
3683 4785 7.724490 TCTCTATACACTATGGCATTGCTAT 57.276 36.000 12.39 12.39 33.54 2.97
3684 4786 7.539034 TTCTCTATACACTATGGCATTGCTA 57.461 36.000 4.78 2.16 0.00 3.49
3685 4787 6.425210 TTCTCTATACACTATGGCATTGCT 57.575 37.500 4.78 0.00 0.00 3.91
3686 4788 7.678947 AATTCTCTATACACTATGGCATTGC 57.321 36.000 4.78 0.00 0.00 3.56
3687 4789 8.725148 GGAAATTCTCTATACACTATGGCATTG 58.275 37.037 4.78 6.29 0.00 2.82
3688 4790 7.604164 CGGAAATTCTCTATACACTATGGCATT 59.396 37.037 4.78 0.00 0.00 3.56
3689 4791 7.099764 CGGAAATTCTCTATACACTATGGCAT 58.900 38.462 4.88 4.88 0.00 4.40
3690 4792 6.455647 CGGAAATTCTCTATACACTATGGCA 58.544 40.000 0.00 0.00 0.00 4.92
3691 4793 5.348997 GCGGAAATTCTCTATACACTATGGC 59.651 44.000 0.00 0.00 0.00 4.40
3692 4794 5.573282 CGCGGAAATTCTCTATACACTATGG 59.427 44.000 0.00 0.00 0.00 2.74
3693 4795 5.061064 GCGCGGAAATTCTCTATACACTATG 59.939 44.000 8.83 0.00 0.00 2.23
3694 4796 5.047943 AGCGCGGAAATTCTCTATACACTAT 60.048 40.000 8.83 0.00 0.00 2.12
3695 4797 4.277672 AGCGCGGAAATTCTCTATACACTA 59.722 41.667 8.83 0.00 0.00 2.74
3696 4798 3.068307 AGCGCGGAAATTCTCTATACACT 59.932 43.478 8.83 0.00 0.00 3.55
3697 4799 3.381949 AGCGCGGAAATTCTCTATACAC 58.618 45.455 8.83 0.00 0.00 2.90
3698 4800 3.728076 AGCGCGGAAATTCTCTATACA 57.272 42.857 8.83 0.00 0.00 2.29
3699 4801 6.707599 ATTTAGCGCGGAAATTCTCTATAC 57.292 37.500 8.83 0.00 0.00 1.47
3700 4802 6.347402 GCAATTTAGCGCGGAAATTCTCTATA 60.347 38.462 24.35 0.00 34.93 1.31
3701 4803 5.560953 GCAATTTAGCGCGGAAATTCTCTAT 60.561 40.000 24.35 8.23 34.93 1.98
3702 4804 4.260620 GCAATTTAGCGCGGAAATTCTCTA 60.261 41.667 24.35 0.00 34.93 2.43
3703 4805 3.487544 GCAATTTAGCGCGGAAATTCTCT 60.488 43.478 24.35 9.07 34.93 3.10
3704 4806 2.783832 GCAATTTAGCGCGGAAATTCTC 59.216 45.455 24.35 17.79 34.93 2.87
3705 4807 2.423538 AGCAATTTAGCGCGGAAATTCT 59.576 40.909 24.35 20.93 34.93 2.40
3706 4808 2.783832 GAGCAATTTAGCGCGGAAATTC 59.216 45.455 24.35 19.70 34.93 2.17
3707 4809 2.797491 GAGCAATTTAGCGCGGAAATT 58.203 42.857 22.56 22.56 37.04 1.82
3708 4810 2.475200 GAGCAATTTAGCGCGGAAAT 57.525 45.000 8.83 15.07 40.15 2.17
3709 4811 3.988459 GAGCAATTTAGCGCGGAAA 57.012 47.368 8.83 12.04 40.15 3.13
3714 4816 1.258197 GTAGACCGAGCAATTTAGCGC 59.742 52.381 0.00 0.00 40.15 5.92
3715 4817 2.536365 TGTAGACCGAGCAATTTAGCG 58.464 47.619 0.00 0.00 40.15 4.26
3716 4818 4.332819 ACATTGTAGACCGAGCAATTTAGC 59.667 41.667 0.00 0.00 31.31 3.09
3717 4819 5.812642 AGACATTGTAGACCGAGCAATTTAG 59.187 40.000 0.00 0.00 31.31 1.85
3718 4820 5.730550 AGACATTGTAGACCGAGCAATTTA 58.269 37.500 0.00 0.00 31.31 1.40
3719 4821 4.579869 AGACATTGTAGACCGAGCAATTT 58.420 39.130 0.00 0.00 31.31 1.82
3720 4822 4.184629 GAGACATTGTAGACCGAGCAATT 58.815 43.478 0.00 0.00 31.31 2.32
3721 4823 3.735208 CGAGACATTGTAGACCGAGCAAT 60.735 47.826 0.00 0.00 33.64 3.56
3722 4824 2.415491 CGAGACATTGTAGACCGAGCAA 60.415 50.000 0.00 0.00 0.00 3.91
3723 4825 1.132453 CGAGACATTGTAGACCGAGCA 59.868 52.381 0.00 0.00 0.00 4.26
3724 4826 1.828832 CGAGACATTGTAGACCGAGC 58.171 55.000 0.00 0.00 0.00 5.03
3725 4827 1.402259 AGCGAGACATTGTAGACCGAG 59.598 52.381 0.00 0.00 0.00 4.63
3726 4828 1.460504 AGCGAGACATTGTAGACCGA 58.539 50.000 0.00 0.00 0.00 4.69
3727 4829 3.416119 TTAGCGAGACATTGTAGACCG 57.584 47.619 0.00 0.00 0.00 4.79
3728 4830 4.918583 GCTATTAGCGAGACATTGTAGACC 59.081 45.833 0.00 0.00 0.00 3.85
3729 4831 5.520632 TGCTATTAGCGAGACATTGTAGAC 58.479 41.667 10.94 0.00 46.26 2.59
3730 4832 5.767816 TGCTATTAGCGAGACATTGTAGA 57.232 39.130 10.94 0.00 46.26 2.59
3731 4833 6.617317 GCATTGCTATTAGCGAGACATTGTAG 60.617 42.308 11.21 0.00 46.26 2.74
3732 4834 5.177511 GCATTGCTATTAGCGAGACATTGTA 59.822 40.000 11.21 0.00 46.26 2.41
3733 4835 4.024556 GCATTGCTATTAGCGAGACATTGT 60.025 41.667 11.21 0.00 46.26 2.71
3734 4836 4.212847 AGCATTGCTATTAGCGAGACATTG 59.787 41.667 10.00 5.64 46.26 2.82
3735 4837 4.384056 AGCATTGCTATTAGCGAGACATT 58.616 39.130 10.00 0.00 46.26 2.71
3736 4838 4.000331 AGCATTGCTATTAGCGAGACAT 58.000 40.909 10.00 0.00 46.26 3.06
3737 4839 3.459232 AGCATTGCTATTAGCGAGACA 57.541 42.857 10.00 0.00 46.26 3.41
3748 4850 0.976641 AGCGGGCTATAGCATTGCTA 59.023 50.000 26.42 20.06 45.55 3.49
3749 4851 0.976641 TAGCGGGCTATAGCATTGCT 59.023 50.000 28.74 28.74 44.36 3.91
3750 4852 2.029838 ATAGCGGGCTATAGCATTGC 57.970 50.000 25.53 22.89 44.36 3.56
3757 4859 1.830279 ACGTGCTATAGCGGGCTATA 58.170 50.000 19.55 17.02 45.83 1.31
3758 4860 0.966920 AACGTGCTATAGCGGGCTAT 59.033 50.000 19.55 16.61 45.83 2.97
3759 4861 1.608055 TAACGTGCTATAGCGGGCTA 58.392 50.000 19.55 2.42 45.83 3.93
3760 4862 0.748450 TTAACGTGCTATAGCGGGCT 59.252 50.000 19.55 7.93 45.83 5.19
3761 4863 1.792006 ATTAACGTGCTATAGCGGGC 58.208 50.000 19.55 11.19 45.83 6.13
3762 4864 2.921754 GCTATTAACGTGCTATAGCGGG 59.078 50.000 19.55 15.41 45.83 6.13
3763 4865 3.571571 TGCTATTAACGTGCTATAGCGG 58.428 45.455 19.55 15.75 46.10 5.52
3764 4866 7.451281 AATATGCTATTAACGTGCTATAGCG 57.549 36.000 19.55 9.00 46.10 4.26
3769 4871 8.995220 CCCTAAAAATATGCTATTAACGTGCTA 58.005 33.333 0.00 0.00 0.00 3.49
3770 4872 7.717875 TCCCTAAAAATATGCTATTAACGTGCT 59.282 33.333 0.00 0.00 0.00 4.40
3771 4873 7.801783 GTCCCTAAAAATATGCTATTAACGTGC 59.198 37.037 0.00 0.00 0.00 5.34
3772 4874 8.832521 TGTCCCTAAAAATATGCTATTAACGTG 58.167 33.333 0.00 0.00 0.00 4.49
3773 4875 8.967664 TGTCCCTAAAAATATGCTATTAACGT 57.032 30.769 0.00 0.00 0.00 3.99
3774 4876 9.659830 GTTGTCCCTAAAAATATGCTATTAACG 57.340 33.333 0.00 0.00 0.00 3.18
3775 4877 9.659830 CGTTGTCCCTAAAAATATGCTATTAAC 57.340 33.333 0.00 0.00 0.00 2.01
3776 4878 8.347035 GCGTTGTCCCTAAAAATATGCTATTAA 58.653 33.333 0.00 0.00 0.00 1.40
3777 4879 7.717875 AGCGTTGTCCCTAAAAATATGCTATTA 59.282 33.333 0.00 0.00 0.00 0.98
3778 4880 6.546034 AGCGTTGTCCCTAAAAATATGCTATT 59.454 34.615 0.00 0.00 0.00 1.73
3779 4881 6.062095 AGCGTTGTCCCTAAAAATATGCTAT 58.938 36.000 0.00 0.00 0.00 2.97
3780 4882 5.433526 AGCGTTGTCCCTAAAAATATGCTA 58.566 37.500 0.00 0.00 0.00 3.49
3781 4883 4.270008 AGCGTTGTCCCTAAAAATATGCT 58.730 39.130 0.00 0.00 0.00 3.79
3782 4884 4.632538 AGCGTTGTCCCTAAAAATATGC 57.367 40.909 0.00 0.00 0.00 3.14
3783 4885 9.233232 GAAAATAGCGTTGTCCCTAAAAATATG 57.767 33.333 0.00 0.00 0.00 1.78
3784 4886 9.185680 AGAAAATAGCGTTGTCCCTAAAAATAT 57.814 29.630 0.00 0.00 0.00 1.28
3785 4887 8.570068 AGAAAATAGCGTTGTCCCTAAAAATA 57.430 30.769 0.00 0.00 0.00 1.40
3786 4888 7.462571 AGAAAATAGCGTTGTCCCTAAAAAT 57.537 32.000 0.00 0.00 0.00 1.82
3787 4889 6.887626 AGAAAATAGCGTTGTCCCTAAAAA 57.112 33.333 0.00 0.00 0.00 1.94
3788 4890 6.072342 GGAAGAAAATAGCGTTGTCCCTAAAA 60.072 38.462 0.00 0.00 0.00 1.52
3789 4891 5.413523 GGAAGAAAATAGCGTTGTCCCTAAA 59.586 40.000 0.00 0.00 0.00 1.85
3790 4892 4.939439 GGAAGAAAATAGCGTTGTCCCTAA 59.061 41.667 0.00 0.00 0.00 2.69
3791 4893 4.224370 AGGAAGAAAATAGCGTTGTCCCTA 59.776 41.667 0.00 0.00 0.00 3.53
3792 4894 3.009143 AGGAAGAAAATAGCGTTGTCCCT 59.991 43.478 0.00 0.00 0.00 4.20
3793 4895 3.344515 AGGAAGAAAATAGCGTTGTCCC 58.655 45.455 0.00 0.00 0.00 4.46
3794 4896 4.379499 CCAAGGAAGAAAATAGCGTTGTCC 60.379 45.833 0.00 0.00 0.00 4.02
3795 4897 4.215613 ACCAAGGAAGAAAATAGCGTTGTC 59.784 41.667 0.00 0.00 0.00 3.18
3796 4898 4.142038 ACCAAGGAAGAAAATAGCGTTGT 58.858 39.130 0.00 0.00 0.00 3.32
3797 4899 4.766404 ACCAAGGAAGAAAATAGCGTTG 57.234 40.909 0.00 0.00 0.00 4.10
3798 4900 5.801380 TCTACCAAGGAAGAAAATAGCGTT 58.199 37.500 0.00 0.00 0.00 4.84
3799 4901 5.416271 TCTACCAAGGAAGAAAATAGCGT 57.584 39.130 0.00 0.00 0.00 5.07
3800 4902 6.538742 TGATTCTACCAAGGAAGAAAATAGCG 59.461 38.462 0.00 0.00 35.47 4.26
3801 4903 7.554476 AGTGATTCTACCAAGGAAGAAAATAGC 59.446 37.037 0.00 0.00 35.47 2.97
3802 4904 8.887717 CAGTGATTCTACCAAGGAAGAAAATAG 58.112 37.037 0.00 0.00 35.47 1.73
3803 4905 8.602424 TCAGTGATTCTACCAAGGAAGAAAATA 58.398 33.333 0.00 0.00 35.47 1.40
3804 4906 7.461749 TCAGTGATTCTACCAAGGAAGAAAAT 58.538 34.615 0.00 0.00 35.47 1.82
3805 4907 6.837312 TCAGTGATTCTACCAAGGAAGAAAA 58.163 36.000 0.00 0.00 35.47 2.29
3806 4908 6.433847 TCAGTGATTCTACCAAGGAAGAAA 57.566 37.500 0.00 0.00 35.47 2.52
3807 4909 6.627087 ATCAGTGATTCTACCAAGGAAGAA 57.373 37.500 0.00 0.00 36.24 2.52
3808 4910 6.627087 AATCAGTGATTCTACCAAGGAAGA 57.373 37.500 12.75 0.00 0.00 2.87
3809 4911 6.917217 GAATCAGTGATTCTACCAAGGAAG 57.083 41.667 30.39 0.00 43.39 3.46
3837 4939 1.339610 CAGTGATTCACCCCGCAAAAA 59.660 47.619 13.14 0.00 34.49 1.94
3838 4940 0.958091 CAGTGATTCACCCCGCAAAA 59.042 50.000 13.14 0.00 34.49 2.44
3839 4941 0.109532 TCAGTGATTCACCCCGCAAA 59.890 50.000 13.14 0.00 34.49 3.68
3840 4942 0.327924 ATCAGTGATTCACCCCGCAA 59.672 50.000 13.14 0.00 34.49 4.85
3841 4943 0.327924 AATCAGTGATTCACCCCGCA 59.672 50.000 12.75 0.00 34.49 5.69
3842 4944 1.017387 GAATCAGTGATTCACCCCGC 58.983 55.000 31.92 10.92 45.30 6.13
3865 4967 6.037720 ACACGTGTTCTTCATACAAATCACAA 59.962 34.615 17.22 0.00 0.00 3.33
3884 4986 9.872757 AACAAATATACAAGAGTTTAACACGTG 57.127 29.630 15.48 15.48 0.00 4.49
3886 4988 9.872757 ACAACAAATATACAAGAGTTTAACACG 57.127 29.630 0.00 0.00 0.00 4.49
3933 5035 2.540361 GCAATGCATGTCCAGAATCGAC 60.540 50.000 0.00 0.00 0.00 4.20
3936 5038 2.029623 AGGCAATGCATGTCCAGAATC 58.970 47.619 16.90 0.00 32.58 2.52
3953 5055 3.118519 AGGGATCAATGCAAATTGAAGGC 60.119 43.478 6.82 0.91 42.95 4.35
4088 5190 9.772973 ATATAAATGGTGCGTATTAGTCTTCAA 57.227 29.630 0.00 0.00 0.00 2.69
4100 5202 7.043722 CGCAAATACAAAATATAAATGGTGCGT 60.044 33.333 0.00 0.00 42.47 5.24
4125 5227 1.205655 TCATTCCTCTTGAGGCTGTCG 59.794 52.381 11.61 0.00 0.00 4.35
4134 5236 9.565213 GACATAGTCAAAAATTCATTCCTCTTG 57.435 33.333 0.00 0.00 32.09 3.02
4157 5259 8.372459 ACATACAAACTAACCTCATAGTTGACA 58.628 33.333 0.86 0.00 43.52 3.58
4166 5268 6.665992 AGTCAGACATACAAACTAACCTCA 57.334 37.500 2.66 0.00 0.00 3.86
4170 5272 7.964604 AAGGAAGTCAGACATACAAACTAAC 57.035 36.000 2.66 0.00 0.00 2.34
4181 5283 4.365514 TTGCCATTAAGGAAGTCAGACA 57.634 40.909 2.66 0.00 41.22 3.41
4195 5297 3.382546 CCAGGAGATTCGATTTTGCCATT 59.617 43.478 0.00 0.00 0.00 3.16
4196 5298 2.954318 CCAGGAGATTCGATTTTGCCAT 59.046 45.455 0.00 0.00 0.00 4.40
4199 5301 3.009723 TGTCCAGGAGATTCGATTTTGC 58.990 45.455 0.00 0.00 0.00 3.68
4246 5348 3.157932 GAGAAGATCTGGTTCTCGTGG 57.842 52.381 7.07 0.00 40.35 4.94
4254 5356 1.689273 GGCGTATGGAGAAGATCTGGT 59.311 52.381 0.00 0.00 0.00 4.00
4295 5397 5.779241 TTCCCTCCAAACAGAATCTGTAT 57.221 39.130 17.04 4.42 44.62 2.29
4306 5408 4.664150 TGTGTTGATTTTCCCTCCAAAC 57.336 40.909 0.00 0.00 0.00 2.93
4318 5420 5.273170 CACGAGTGAAATGTTGTGTTGATT 58.727 37.500 0.00 0.00 0.00 2.57
4331 5465 4.342951 TCTTCCTTACTTCCACGAGTGAAA 59.657 41.667 4.59 0.00 0.00 2.69
4332 5466 3.893200 TCTTCCTTACTTCCACGAGTGAA 59.107 43.478 4.59 0.00 0.00 3.18
4337 5471 2.824341 GTCCTCTTCCTTACTTCCACGA 59.176 50.000 0.00 0.00 0.00 4.35
4415 5549 4.620184 GTGCTAGTGAAGTGTACCGTAAAG 59.380 45.833 0.00 0.00 0.00 1.85
4418 5552 3.415212 AGTGCTAGTGAAGTGTACCGTA 58.585 45.455 0.00 0.00 0.00 4.02
4433 5567 5.480772 GGAGATGCCCTTACTATTAGTGCTA 59.519 44.000 6.60 0.00 0.00 3.49
4437 5571 5.308237 CCTTGGAGATGCCCTTACTATTAGT 59.692 44.000 1.30 1.30 34.97 2.24
4442 5576 1.768870 GCCTTGGAGATGCCCTTACTA 59.231 52.381 0.00 0.00 34.97 1.82
4460 5594 0.668535 GTCCATTTTAGCGGATGGCC 59.331 55.000 0.00 0.00 45.17 5.36
4462 5596 2.097466 GTGTGTCCATTTTAGCGGATGG 59.903 50.000 4.85 4.85 43.36 3.51
4467 5601 5.938322 ACAAATAGTGTGTCCATTTTAGCG 58.062 37.500 0.00 0.00 39.72 4.26
4477 5611 0.719465 CCGCGGACAAATAGTGTGTC 59.281 55.000 24.07 0.00 41.96 3.67
4493 5627 0.858583 GTTTTTGTGCATTGGTCCGC 59.141 50.000 0.00 0.00 0.00 5.54
4494 5628 2.507339 AGTTTTTGTGCATTGGTCCG 57.493 45.000 0.00 0.00 0.00 4.79
4499 5633 5.704888 TCCCGTATTAGTTTTTGTGCATTG 58.295 37.500 0.00 0.00 0.00 2.82
4500 5634 5.475564 ACTCCCGTATTAGTTTTTGTGCATT 59.524 36.000 0.00 0.00 0.00 3.56
4503 5637 5.151389 CAACTCCCGTATTAGTTTTTGTGC 58.849 41.667 0.00 0.00 33.72 4.57
4504 5638 5.695818 CCAACTCCCGTATTAGTTTTTGTG 58.304 41.667 0.00 0.00 33.72 3.33
4505 5639 4.216902 GCCAACTCCCGTATTAGTTTTTGT 59.783 41.667 0.00 0.00 33.72 2.83
4506 5640 4.457949 AGCCAACTCCCGTATTAGTTTTTG 59.542 41.667 0.00 0.00 33.72 2.44
4508 5642 4.296621 AGCCAACTCCCGTATTAGTTTT 57.703 40.909 0.00 0.00 33.72 2.43
4509 5643 3.994931 AGCCAACTCCCGTATTAGTTT 57.005 42.857 0.00 0.00 33.72 2.66
4514 5658 1.575419 TGGTAGCCAACTCCCGTATT 58.425 50.000 0.00 0.00 0.00 1.89
4525 5669 0.039035 GGGATGTGGTTTGGTAGCCA 59.961 55.000 0.00 0.00 0.00 4.75
4526 5670 0.039035 TGGGATGTGGTTTGGTAGCC 59.961 55.000 0.00 0.00 0.00 3.93
4529 5673 5.584913 ACATTTATGGGATGTGGTTTGGTA 58.415 37.500 0.00 0.00 36.43 3.25
4531 5675 4.141959 GGACATTTATGGGATGTGGTTTGG 60.142 45.833 0.00 0.00 37.83 3.28
4533 5677 3.699038 CGGACATTTATGGGATGTGGTTT 59.301 43.478 0.00 0.00 37.83 3.27
4538 5682 1.478654 GGGCGGACATTTATGGGATGT 60.479 52.381 0.00 0.00 40.27 3.06
4554 5698 1.068333 CAAATTGTCTGGACTTGGGCG 60.068 52.381 2.38 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.