Multiple sequence alignment - TraesCS5B01G366100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G366100 chr5B 100.000 3419 0 0 924 4342 544763121 544766539 0.000000e+00 6314.0
1 TraesCS5B01G366100 chr5B 100.000 614 0 0 1 614 544762198 544762811 0.000000e+00 1134.0
2 TraesCS5B01G366100 chr5B 79.892 741 96 25 3132 3828 544811874 544812605 1.080000e-135 494.0
3 TraesCS5B01G366100 chr5B 100.000 33 0 0 3024 3056 544765188 544765220 1.300000e-05 62.1
4 TraesCS5B01G366100 chr5B 100.000 33 0 0 2991 3023 544765221 544765253 1.300000e-05 62.1
5 TraesCS5B01G366100 chr5A 90.338 2132 122 37 930 3023 564531118 564533203 0.000000e+00 2719.0
6 TraesCS5B01G366100 chr5A 89.888 890 62 10 3024 3903 564533171 564534042 0.000000e+00 1120.0
7 TraesCS5B01G366100 chr5A 77.318 895 119 48 3396 4235 564588828 564589693 6.620000e-123 451.0
8 TraesCS5B01G366100 chr5A 85.556 360 39 9 3991 4342 564595205 564595559 8.870000e-97 364.0
9 TraesCS5B01G366100 chr5A 87.676 284 22 6 3887 4170 564534186 564534456 7.010000e-83 318.0
10 TraesCS5B01G366100 chr5A 88.158 152 16 2 4115 4264 564579913 564580064 3.450000e-41 180.0
11 TraesCS5B01G366100 chr5A 80.702 171 26 4 3684 3853 564594931 564595095 4.560000e-25 126.0
12 TraesCS5B01G366100 chr5A 88.095 84 10 0 4259 4342 564582566 564582649 2.760000e-17 100.0
13 TraesCS5B01G366100 chr5D 94.066 1247 63 5 3104 4342 446571890 446573133 0.000000e+00 1882.0
14 TraesCS5B01G366100 chr5D 91.474 1208 66 14 1829 3022 446570687 446571871 0.000000e+00 1626.0
15 TraesCS5B01G366100 chr5D 90.244 902 47 12 930 1830 446569762 446570623 0.000000e+00 1140.0
16 TraesCS5B01G366100 chr5D 76.681 1175 173 55 3131 4235 446741537 446742680 3.790000e-155 558.0
17 TraesCS5B01G366100 chr5D 85.714 357 38 9 3994 4342 446756213 446756564 8.870000e-97 364.0
18 TraesCS5B01G366100 chr5D 87.251 251 13 10 311 551 446568750 446568991 7.160000e-68 268.0
19 TraesCS5B01G366100 chr5D 86.957 230 28 2 4115 4342 446684017 446684246 1.550000e-64 257.0
20 TraesCS5B01G366100 chr5D 81.595 163 22 5 3696 3857 446755948 446756103 1.270000e-25 128.0
21 TraesCS5B01G366100 chr4B 91.014 345 25 3 2255 2598 564854950 564855289 1.100000e-125 460.0
22 TraesCS5B01G366100 chr4B 88.506 87 5 3 1506 1592 564822114 564822195 2.760000e-17 100.0
23 TraesCS5B01G366100 chr2D 82.018 545 59 18 2113 2628 78523745 78523211 1.120000e-115 427.0
24 TraesCS5B01G366100 chr2D 84.733 262 22 5 2780 3023 78523110 78522849 3.350000e-61 246.0
25 TraesCS5B01G366100 chr1A 83.262 466 58 9 3438 3889 564090091 564089632 1.120000e-110 411.0
26 TraesCS5B01G366100 chr1A 91.837 49 2 1 1801 1847 564091381 564091333 2.800000e-07 67.6
27 TraesCS5B01G366100 chr2B 80.717 586 61 25 2074 2628 121512047 121511483 4.040000e-110 409.0
28 TraesCS5B01G366100 chr2B 82.759 319 24 10 2735 3023 121511439 121511122 5.570000e-64 255.0
29 TraesCS5B01G366100 chr2B 84.711 242 27 8 1252 1492 121512952 121512720 2.610000e-57 233.0
30 TraesCS5B01G366100 chr2A 81.569 548 54 21 2111 2628 78805487 78804957 4.040000e-110 409.0
31 TraesCS5B01G366100 chr1B 86.008 243 29 4 1252 1490 653057151 653056910 5.570000e-64 255.0
32 TraesCS5B01G366100 chr1B 100.000 30 0 0 2599 2628 653056193 653056164 6.070000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G366100 chr5B 544762198 544766539 4341 False 1893.050000 6314 100.000000 1 4342 4 chr5B.!!$F2 4341
1 TraesCS5B01G366100 chr5B 544811874 544812605 731 False 494.000000 494 79.892000 3132 3828 1 chr5B.!!$F1 696
2 TraesCS5B01G366100 chr5A 564531118 564534456 3338 False 1385.666667 2719 89.300667 930 4170 3 chr5A.!!$F2 3240
3 TraesCS5B01G366100 chr5A 564588828 564589693 865 False 451.000000 451 77.318000 3396 4235 1 chr5A.!!$F1 839
4 TraesCS5B01G366100 chr5A 564594931 564595559 628 False 245.000000 364 83.129000 3684 4342 2 chr5A.!!$F4 658
5 TraesCS5B01G366100 chr5D 446568750 446573133 4383 False 1229.000000 1882 90.758750 311 4342 4 chr5D.!!$F3 4031
6 TraesCS5B01G366100 chr5D 446741537 446742680 1143 False 558.000000 558 76.681000 3131 4235 1 chr5D.!!$F2 1104
7 TraesCS5B01G366100 chr5D 446755948 446756564 616 False 246.000000 364 83.654500 3696 4342 2 chr5D.!!$F4 646
8 TraesCS5B01G366100 chr2D 78522849 78523745 896 True 336.500000 427 83.375500 2113 3023 2 chr2D.!!$R1 910
9 TraesCS5B01G366100 chr1A 564089632 564091381 1749 True 239.300000 411 87.549500 1801 3889 2 chr1A.!!$R1 2088
10 TraesCS5B01G366100 chr2B 121511122 121512952 1830 True 299.000000 409 82.729000 1252 3023 3 chr2B.!!$R1 1771
11 TraesCS5B01G366100 chr2A 78804957 78805487 530 True 409.000000 409 81.569000 2111 2628 1 chr2A.!!$R1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 172 0.106268 TTGAAGCCTGGGACTTGCAA 60.106 50.0 0.00 0.0 0.00 4.08 F
483 492 0.250467 GCGAGGCATATGTCCATGGT 60.250 55.0 12.58 0.0 0.00 3.55 F
547 556 0.320771 TGAGCTTCTCGGAAGTTGCC 60.321 55.0 13.06 0.0 32.35 4.52 F
2447 3288 0.531090 GGACAACCGTGTACTGTGCA 60.531 55.0 0.00 0.0 38.41 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1928 2470 0.247736 GTCCTGATCACTGCCGAGTT 59.752 55.000 0.00 0.00 0.00 3.01 R
2357 3191 2.449464 AGCAAACTTATCAGCATGCCA 58.551 42.857 15.66 0.78 36.16 4.92 R
2462 3304 2.805671 TCGTAAAACACTGGATGCACAG 59.194 45.455 2.91 2.91 44.03 3.66 R
3940 5172 1.635663 GCGGAAGTCGGGTTGTCATG 61.636 60.000 0.00 0.00 39.69 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.267121 TCCACTAGGAAGACACCAGC 58.733 55.000 0.00 0.00 42.23 4.85
20 21 0.108615 CCACTAGGAAGACACCAGCG 60.109 60.000 0.00 0.00 36.89 5.18
21 22 0.888619 CACTAGGAAGACACCAGCGA 59.111 55.000 0.00 0.00 0.00 4.93
22 23 1.135257 CACTAGGAAGACACCAGCGAG 60.135 57.143 0.00 0.00 0.00 5.03
23 24 0.179124 CTAGGAAGACACCAGCGAGC 60.179 60.000 0.00 0.00 0.00 5.03
24 25 1.934220 TAGGAAGACACCAGCGAGCG 61.934 60.000 0.00 0.00 0.00 5.03
25 26 2.258591 GAAGACACCAGCGAGCGA 59.741 61.111 0.00 0.00 0.00 4.93
26 27 1.803519 GAAGACACCAGCGAGCGAG 60.804 63.158 0.00 0.00 0.00 5.03
27 28 3.923563 AAGACACCAGCGAGCGAGC 62.924 63.158 0.00 0.00 37.41 5.03
30 31 4.862092 CACCAGCGAGCGAGCGAT 62.862 66.667 1.41 0.00 43.00 4.58
31 32 4.862092 ACCAGCGAGCGAGCGATG 62.862 66.667 8.34 8.34 46.20 3.84
34 35 2.354422 AGCGAGCGAGCGATGATG 60.354 61.111 1.41 0.00 43.00 3.07
35 36 4.056954 GCGAGCGAGCGATGATGC 62.057 66.667 1.41 0.00 0.00 3.91
44 45 3.699484 CGATGATGCTCGCTGCCG 61.699 66.667 0.00 0.00 42.00 5.69
45 46 4.010414 GATGATGCTCGCTGCCGC 62.010 66.667 0.00 0.00 42.00 6.53
60 61 4.697756 CGCCACCCACCGTGATGT 62.698 66.667 0.00 0.00 46.20 3.06
61 62 2.666207 GCCACCCACCGTGATGTA 59.334 61.111 0.00 0.00 46.20 2.29
62 63 1.449601 GCCACCCACCGTGATGTAG 60.450 63.158 0.00 0.00 46.20 2.74
63 64 1.980052 CCACCCACCGTGATGTAGT 59.020 57.895 0.00 0.00 46.20 2.73
64 65 0.391130 CCACCCACCGTGATGTAGTG 60.391 60.000 0.00 0.13 46.20 2.74
65 66 0.320374 CACCCACCGTGATGTAGTGT 59.680 55.000 0.00 0.00 46.20 3.55
66 67 1.053424 ACCCACCGTGATGTAGTGTT 58.947 50.000 0.00 0.00 0.00 3.32
67 68 1.270625 ACCCACCGTGATGTAGTGTTG 60.271 52.381 0.00 0.00 0.00 3.33
68 69 1.270625 CCCACCGTGATGTAGTGTTGT 60.271 52.381 0.00 0.00 0.00 3.32
69 70 2.489971 CCACCGTGATGTAGTGTTGTT 58.510 47.619 0.00 0.00 0.00 2.83
70 71 2.223144 CCACCGTGATGTAGTGTTGTTG 59.777 50.000 0.00 0.00 0.00 3.33
71 72 2.869801 CACCGTGATGTAGTGTTGTTGT 59.130 45.455 0.00 0.00 0.00 3.32
72 73 3.311322 CACCGTGATGTAGTGTTGTTGTT 59.689 43.478 0.00 0.00 0.00 2.83
73 74 4.508492 CACCGTGATGTAGTGTTGTTGTTA 59.492 41.667 0.00 0.00 0.00 2.41
74 75 5.178623 CACCGTGATGTAGTGTTGTTGTTAT 59.821 40.000 0.00 0.00 0.00 1.89
75 76 6.366604 CACCGTGATGTAGTGTTGTTGTTATA 59.633 38.462 0.00 0.00 0.00 0.98
76 77 7.064134 CACCGTGATGTAGTGTTGTTGTTATAT 59.936 37.037 0.00 0.00 0.00 0.86
77 78 8.252417 ACCGTGATGTAGTGTTGTTGTTATATA 58.748 33.333 0.00 0.00 0.00 0.86
78 79 8.537223 CCGTGATGTAGTGTTGTTGTTATATAC 58.463 37.037 0.00 0.00 0.00 1.47
79 80 9.297586 CGTGATGTAGTGTTGTTGTTATATACT 57.702 33.333 0.00 0.00 0.00 2.12
84 85 9.767228 TGTAGTGTTGTTGTTATATACTGTTGT 57.233 29.630 0.00 0.00 0.00 3.32
87 88 9.991906 AGTGTTGTTGTTATATACTGTTGTAGT 57.008 29.630 0.00 0.00 43.56 2.73
89 90 8.714179 TGTTGTTGTTATATACTGTTGTAGTGC 58.286 33.333 0.00 0.00 40.65 4.40
90 91 8.932791 GTTGTTGTTATATACTGTTGTAGTGCT 58.067 33.333 0.00 0.00 40.65 4.40
91 92 8.474006 TGTTGTTATATACTGTTGTAGTGCTG 57.526 34.615 0.00 0.00 40.65 4.41
92 93 8.092068 TGTTGTTATATACTGTTGTAGTGCTGT 58.908 33.333 0.00 0.00 40.65 4.40
93 94 8.592998 GTTGTTATATACTGTTGTAGTGCTGTC 58.407 37.037 0.00 0.00 40.65 3.51
94 95 7.262772 TGTTATATACTGTTGTAGTGCTGTCC 58.737 38.462 0.00 0.00 40.65 4.02
95 96 7.123697 TGTTATATACTGTTGTAGTGCTGTCCT 59.876 37.037 0.00 0.00 40.65 3.85
96 97 8.627403 GTTATATACTGTTGTAGTGCTGTCCTA 58.373 37.037 0.00 0.00 40.65 2.94
97 98 7.841282 ATATACTGTTGTAGTGCTGTCCTAT 57.159 36.000 0.00 0.00 40.65 2.57
98 99 4.891992 ACTGTTGTAGTGCTGTCCTATT 57.108 40.909 0.00 0.00 38.49 1.73
99 100 5.228945 ACTGTTGTAGTGCTGTCCTATTT 57.771 39.130 0.00 0.00 38.49 1.40
100 101 4.997395 ACTGTTGTAGTGCTGTCCTATTTG 59.003 41.667 0.00 0.00 38.49 2.32
101 102 5.221641 ACTGTTGTAGTGCTGTCCTATTTGA 60.222 40.000 0.00 0.00 38.49 2.69
102 103 5.616270 TGTTGTAGTGCTGTCCTATTTGAA 58.384 37.500 0.00 0.00 0.00 2.69
103 104 6.237901 TGTTGTAGTGCTGTCCTATTTGAAT 58.762 36.000 0.00 0.00 0.00 2.57
104 105 6.149308 TGTTGTAGTGCTGTCCTATTTGAATG 59.851 38.462 0.00 0.00 0.00 2.67
105 106 4.635765 TGTAGTGCTGTCCTATTTGAATGC 59.364 41.667 0.00 0.00 0.00 3.56
106 107 3.960571 AGTGCTGTCCTATTTGAATGCT 58.039 40.909 0.00 0.00 0.00 3.79
107 108 4.338879 AGTGCTGTCCTATTTGAATGCTT 58.661 39.130 0.00 0.00 0.00 3.91
108 109 5.500234 AGTGCTGTCCTATTTGAATGCTTA 58.500 37.500 0.00 0.00 0.00 3.09
109 110 5.587844 AGTGCTGTCCTATTTGAATGCTTAG 59.412 40.000 0.00 0.00 0.00 2.18
110 111 5.586243 GTGCTGTCCTATTTGAATGCTTAGA 59.414 40.000 0.00 0.00 0.00 2.10
111 112 5.819379 TGCTGTCCTATTTGAATGCTTAGAG 59.181 40.000 0.00 0.00 0.00 2.43
112 113 5.277731 GCTGTCCTATTTGAATGCTTAGAGC 60.278 44.000 0.00 0.00 42.82 4.09
121 122 4.988065 GCTTAGAGCACACACGGA 57.012 55.556 0.00 0.00 41.89 4.69
122 123 3.442996 GCTTAGAGCACACACGGAT 57.557 52.632 0.00 0.00 41.89 4.18
123 124 1.002366 GCTTAGAGCACACACGGATG 58.998 55.000 0.00 0.00 41.89 3.51
124 125 1.404181 GCTTAGAGCACACACGGATGA 60.404 52.381 0.00 0.00 41.89 2.92
125 126 2.739932 GCTTAGAGCACACACGGATGAT 60.740 50.000 0.00 0.00 41.89 2.45
126 127 3.525537 CTTAGAGCACACACGGATGATT 58.474 45.455 0.00 0.00 0.00 2.57
127 128 1.730501 AGAGCACACACGGATGATTG 58.269 50.000 0.00 0.00 0.00 2.67
128 129 1.002430 AGAGCACACACGGATGATTGT 59.998 47.619 0.00 0.00 0.00 2.71
129 130 1.806542 GAGCACACACGGATGATTGTT 59.193 47.619 0.00 0.00 0.00 2.83
130 131 3.000041 GAGCACACACGGATGATTGTTA 59.000 45.455 0.00 0.00 0.00 2.41
131 132 2.742053 AGCACACACGGATGATTGTTAC 59.258 45.455 0.00 0.00 0.00 2.50
132 133 2.159572 GCACACACGGATGATTGTTACC 60.160 50.000 0.00 0.00 0.00 2.85
133 134 3.070748 CACACACGGATGATTGTTACCA 58.929 45.455 0.00 0.00 0.00 3.25
134 135 3.689161 CACACACGGATGATTGTTACCAT 59.311 43.478 0.00 0.00 0.00 3.55
135 136 4.155826 CACACACGGATGATTGTTACCATT 59.844 41.667 0.00 0.00 0.00 3.16
136 137 4.764823 ACACACGGATGATTGTTACCATTT 59.235 37.500 0.00 0.00 0.00 2.32
137 138 5.242838 ACACACGGATGATTGTTACCATTTT 59.757 36.000 0.00 0.00 0.00 1.82
138 139 6.155827 CACACGGATGATTGTTACCATTTTT 58.844 36.000 0.00 0.00 0.00 1.94
139 140 7.040340 ACACACGGATGATTGTTACCATTTTTA 60.040 33.333 0.00 0.00 0.00 1.52
140 141 7.272515 CACACGGATGATTGTTACCATTTTTAC 59.727 37.037 0.00 0.00 0.00 2.01
141 142 7.175990 ACACGGATGATTGTTACCATTTTTACT 59.824 33.333 0.00 0.00 0.00 2.24
142 143 8.026607 CACGGATGATTGTTACCATTTTTACTT 58.973 33.333 0.00 0.00 0.00 2.24
143 144 8.581578 ACGGATGATTGTTACCATTTTTACTTT 58.418 29.630 0.00 0.00 0.00 2.66
159 160 9.639601 ATTTTTACTTTATTACTGCTTGAAGCC 57.360 29.630 15.43 0.00 41.51 4.35
160 161 7.996098 TTTACTTTATTACTGCTTGAAGCCT 57.004 32.000 15.43 2.08 41.51 4.58
161 162 5.886960 ACTTTATTACTGCTTGAAGCCTG 57.113 39.130 15.43 10.03 41.51 4.85
162 163 4.702131 ACTTTATTACTGCTTGAAGCCTGG 59.298 41.667 15.43 7.47 41.51 4.45
163 164 2.134789 ATTACTGCTTGAAGCCTGGG 57.865 50.000 15.43 5.00 41.51 4.45
164 165 1.064003 TTACTGCTTGAAGCCTGGGA 58.936 50.000 15.43 0.00 41.51 4.37
165 166 0.324943 TACTGCTTGAAGCCTGGGAC 59.675 55.000 15.43 0.00 41.51 4.46
166 167 1.377994 CTGCTTGAAGCCTGGGACT 59.622 57.895 15.43 0.00 41.51 3.85
167 168 0.251077 CTGCTTGAAGCCTGGGACTT 60.251 55.000 15.43 0.00 41.51 3.01
168 169 0.538057 TGCTTGAAGCCTGGGACTTG 60.538 55.000 15.43 0.00 41.51 3.16
169 170 1.871126 GCTTGAAGCCTGGGACTTGC 61.871 60.000 5.74 0.00 34.48 4.01
170 171 0.538057 CTTGAAGCCTGGGACTTGCA 60.538 55.000 0.00 0.00 0.00 4.08
171 172 0.106268 TTGAAGCCTGGGACTTGCAA 60.106 50.000 0.00 0.00 0.00 4.08
172 173 0.106268 TGAAGCCTGGGACTTGCAAA 60.106 50.000 0.00 0.00 0.00 3.68
173 174 1.039856 GAAGCCTGGGACTTGCAAAA 58.960 50.000 0.00 0.00 0.00 2.44
174 175 1.412343 GAAGCCTGGGACTTGCAAAAA 59.588 47.619 0.00 0.00 0.00 1.94
208 209 2.738587 TGGCCGGCCAATAAAATAGA 57.261 45.000 45.50 19.03 44.12 1.98
209 210 3.237268 TGGCCGGCCAATAAAATAGAT 57.763 42.857 45.50 0.00 44.12 1.98
210 211 3.571590 TGGCCGGCCAATAAAATAGATT 58.428 40.909 45.50 0.00 44.12 2.40
211 212 4.730966 TGGCCGGCCAATAAAATAGATTA 58.269 39.130 45.50 17.67 44.12 1.75
212 213 5.141182 TGGCCGGCCAATAAAATAGATTAA 58.859 37.500 45.50 16.91 44.12 1.40
213 214 5.777732 TGGCCGGCCAATAAAATAGATTAAT 59.222 36.000 45.50 0.00 44.12 1.40
214 215 6.268847 TGGCCGGCCAATAAAATAGATTAATT 59.731 34.615 45.50 0.00 44.12 1.40
215 216 6.589907 GGCCGGCCAATAAAATAGATTAATTG 59.410 38.462 40.73 0.00 35.81 2.32
216 217 6.589907 GCCGGCCAATAAAATAGATTAATTGG 59.410 38.462 18.11 17.30 41.57 3.16
258 259 7.929941 TTGGCCAATTTATGATTAAAAACCC 57.070 32.000 16.05 0.00 31.33 4.11
259 260 6.109359 TGGCCAATTTATGATTAAAAACCCG 58.891 36.000 0.61 0.00 31.33 5.28
260 261 5.525745 GGCCAATTTATGATTAAAAACCCGG 59.474 40.000 0.00 0.00 31.33 5.73
261 262 5.525745 GCCAATTTATGATTAAAAACCCGGG 59.474 40.000 22.25 22.25 31.33 5.73
262 263 6.645306 CCAATTTATGATTAAAAACCCGGGT 58.355 36.000 24.16 24.16 31.33 5.28
263 264 7.106890 CCAATTTATGATTAAAAACCCGGGTT 58.893 34.615 33.74 33.74 40.45 4.11
264 265 7.065204 CCAATTTATGATTAAAAACCCGGGTTG 59.935 37.037 38.87 20.43 38.47 3.77
265 266 3.603158 ATGATTAAAAACCCGGGTTGC 57.397 42.857 38.87 22.30 38.47 4.17
266 267 1.269998 TGATTAAAAACCCGGGTTGCG 59.730 47.619 38.87 6.34 38.47 4.85
267 268 0.604073 ATTAAAAACCCGGGTTGCGG 59.396 50.000 38.87 5.46 38.47 5.69
268 269 0.466922 TTAAAAACCCGGGTTGCGGA 60.467 50.000 38.87 22.08 38.47 5.54
269 270 0.251253 TAAAAACCCGGGTTGCGGAT 60.251 50.000 38.87 20.82 38.47 4.18
270 271 1.811645 AAAAACCCGGGTTGCGGATG 61.812 55.000 38.87 2.87 38.47 3.51
271 272 2.700407 AAAACCCGGGTTGCGGATGA 62.700 55.000 38.87 0.00 38.47 2.92
272 273 2.493273 AAACCCGGGTTGCGGATGAT 62.493 55.000 38.87 18.41 38.47 2.45
273 274 2.124320 CCCGGGTTGCGGATGATT 60.124 61.111 14.18 0.00 0.00 2.57
274 275 2.480610 CCCGGGTTGCGGATGATTG 61.481 63.158 14.18 0.00 0.00 2.67
275 276 1.748879 CCGGGTTGCGGATGATTGT 60.749 57.895 0.00 0.00 0.00 2.71
276 277 1.312371 CCGGGTTGCGGATGATTGTT 61.312 55.000 0.00 0.00 0.00 2.83
277 278 1.374560 CGGGTTGCGGATGATTGTTA 58.625 50.000 0.00 0.00 0.00 2.41
278 279 1.330521 CGGGTTGCGGATGATTGTTAG 59.669 52.381 0.00 0.00 0.00 2.34
279 280 2.365582 GGGTTGCGGATGATTGTTAGT 58.634 47.619 0.00 0.00 0.00 2.24
280 281 2.752903 GGGTTGCGGATGATTGTTAGTT 59.247 45.455 0.00 0.00 0.00 2.24
281 282 3.942748 GGGTTGCGGATGATTGTTAGTTA 59.057 43.478 0.00 0.00 0.00 2.24
282 283 4.201881 GGGTTGCGGATGATTGTTAGTTAC 60.202 45.833 0.00 0.00 0.00 2.50
283 284 4.634443 GGTTGCGGATGATTGTTAGTTACT 59.366 41.667 0.00 0.00 0.00 2.24
284 285 5.123344 GGTTGCGGATGATTGTTAGTTACTT 59.877 40.000 0.00 0.00 0.00 2.24
285 286 6.314400 GGTTGCGGATGATTGTTAGTTACTTA 59.686 38.462 0.00 0.00 0.00 2.24
286 287 6.897259 TGCGGATGATTGTTAGTTACTTAC 57.103 37.500 0.00 0.00 0.00 2.34
287 288 6.636705 TGCGGATGATTGTTAGTTACTTACT 58.363 36.000 3.21 0.00 41.04 2.24
288 289 6.755141 TGCGGATGATTGTTAGTTACTTACTC 59.245 38.462 3.21 0.00 38.33 2.59
289 290 6.074994 GCGGATGATTGTTAGTTACTTACTCG 60.075 42.308 3.21 0.00 38.33 4.18
290 291 6.074994 CGGATGATTGTTAGTTACTTACTCGC 60.075 42.308 3.21 0.00 38.33 5.03
291 292 6.755141 GGATGATTGTTAGTTACTTACTCGCA 59.245 38.462 3.21 0.00 38.33 5.10
292 293 7.277098 GGATGATTGTTAGTTACTTACTCGCAA 59.723 37.037 3.21 0.00 38.33 4.85
293 294 7.949903 TGATTGTTAGTTACTTACTCGCAAA 57.050 32.000 3.21 0.00 38.33 3.68
294 295 8.367943 TGATTGTTAGTTACTTACTCGCAAAA 57.632 30.769 3.21 0.00 38.33 2.44
295 296 8.828644 TGATTGTTAGTTACTTACTCGCAAAAA 58.171 29.630 3.21 0.00 38.33 1.94
355 361 3.836562 TGGTCTAGGAAAGGTAGGTCAAC 59.163 47.826 0.00 0.00 0.00 3.18
356 362 3.836562 GGTCTAGGAAAGGTAGGTCAACA 59.163 47.826 0.00 0.00 0.00 3.33
357 363 4.322574 GGTCTAGGAAAGGTAGGTCAACAC 60.323 50.000 0.00 0.00 0.00 3.32
359 365 4.903049 TCTAGGAAAGGTAGGTCAACACAA 59.097 41.667 0.00 0.00 0.00 3.33
361 367 5.061721 AGGAAAGGTAGGTCAACACAAAT 57.938 39.130 0.00 0.00 0.00 2.32
365 371 6.713450 GGAAAGGTAGGTCAACACAAATAGAA 59.287 38.462 0.00 0.00 0.00 2.10
367 373 8.528044 AAAGGTAGGTCAACACAAATAGAAAA 57.472 30.769 0.00 0.00 0.00 2.29
368 374 7.745620 AGGTAGGTCAACACAAATAGAAAAG 57.254 36.000 0.00 0.00 0.00 2.27
369 375 6.715264 AGGTAGGTCAACACAAATAGAAAAGG 59.285 38.462 0.00 0.00 0.00 3.11
371 377 7.229907 GGTAGGTCAACACAAATAGAAAAGGAA 59.770 37.037 0.00 0.00 0.00 3.36
372 378 7.654022 AGGTCAACACAAATAGAAAAGGAAA 57.346 32.000 0.00 0.00 0.00 3.13
373 379 8.073467 AGGTCAACACAAATAGAAAAGGAAAA 57.927 30.769 0.00 0.00 0.00 2.29
374 380 8.704668 AGGTCAACACAAATAGAAAAGGAAAAT 58.295 29.630 0.00 0.00 0.00 1.82
412 421 2.044123 AAGTAATGCACTGCCTAGGC 57.956 50.000 27.71 27.71 37.63 3.93
421 430 3.150949 TGCCTAGGCGGATCCATG 58.849 61.111 28.28 0.00 45.51 3.66
433 442 1.151668 GATCCATGATGCTGCCGTAC 58.848 55.000 0.00 0.00 0.00 3.67
483 492 0.250467 GCGAGGCATATGTCCATGGT 60.250 55.000 12.58 0.00 0.00 3.55
484 493 1.800805 CGAGGCATATGTCCATGGTC 58.199 55.000 12.58 6.87 0.00 4.02
485 494 1.800805 GAGGCATATGTCCATGGTCG 58.199 55.000 12.58 0.00 0.00 4.79
486 495 1.344438 GAGGCATATGTCCATGGTCGA 59.656 52.381 12.58 0.00 0.00 4.20
487 496 1.768275 AGGCATATGTCCATGGTCGAA 59.232 47.619 12.58 0.00 0.00 3.71
488 497 1.873591 GGCATATGTCCATGGTCGAAC 59.126 52.381 12.58 2.66 0.00 3.95
489 498 2.560504 GCATATGTCCATGGTCGAACA 58.439 47.619 5.17 5.17 0.00 3.18
511 520 1.608717 AACACGGTTTTGCTTGCCCA 61.609 50.000 0.00 0.00 0.00 5.36
547 556 0.320771 TGAGCTTCTCGGAAGTTGCC 60.321 55.000 13.06 0.00 32.35 4.52
551 560 1.301677 CTTCTCGGAAGTTGCCTGGC 61.302 60.000 12.87 12.87 0.00 4.85
569 605 1.815421 CAAGATCGGACGGGCCAAG 60.815 63.158 4.39 0.00 35.94 3.61
570 606 2.291043 AAGATCGGACGGGCCAAGT 61.291 57.895 4.39 3.30 35.94 3.16
1009 1415 2.965147 GACCGCGCAATGCAGAACA 61.965 57.895 8.75 0.00 46.97 3.18
1460 1884 2.818274 CGCCTTCCGGTTAGTGCC 60.818 66.667 0.00 0.00 0.00 5.01
1464 1888 2.204029 TTCCGGTTAGTGCCCCCT 60.204 61.111 0.00 0.00 0.00 4.79
1469 1894 1.929088 GGTTAGTGCCCCCTTCCCT 60.929 63.158 0.00 0.00 0.00 4.20
1534 1960 3.521796 GCCCGGCTGCCATTTCTC 61.522 66.667 20.29 0.00 0.00 2.87
1535 1961 2.045045 CCCGGCTGCCATTTCTCA 60.045 61.111 20.29 0.00 0.00 3.27
1538 1964 0.819582 CCGGCTGCCATTTCTCATTT 59.180 50.000 20.29 0.00 0.00 2.32
1539 1965 2.023673 CCGGCTGCCATTTCTCATTTA 58.976 47.619 20.29 0.00 0.00 1.40
1540 1966 2.223572 CCGGCTGCCATTTCTCATTTAC 60.224 50.000 20.29 0.00 0.00 2.01
1541 1967 2.423185 CGGCTGCCATTTCTCATTTACA 59.577 45.455 20.29 0.00 0.00 2.41
1542 1968 3.488047 CGGCTGCCATTTCTCATTTACAG 60.488 47.826 20.29 0.00 0.00 2.74
1547 1973 5.252547 TGCCATTTCTCATTTACAGTAGCA 58.747 37.500 0.00 0.00 0.00 3.49
1580 2006 1.064060 CGATCCCTCGTTGCCAATTTC 59.936 52.381 0.00 0.00 40.07 2.17
1614 2048 1.214175 TGTGAGCTGGGGTTTTCTCAA 59.786 47.619 0.00 0.00 37.33 3.02
1672 2127 2.728007 AGCTGCCCAAATTTCTAGACC 58.272 47.619 0.00 0.00 0.00 3.85
1696 2159 3.255888 TGTCTGCTCACCTGTTAGTAGTG 59.744 47.826 0.00 0.00 0.00 2.74
1703 2166 3.895656 TCACCTGTTAGTAGTGCTTCTGT 59.104 43.478 0.00 0.00 0.00 3.41
1704 2167 5.074804 TCACCTGTTAGTAGTGCTTCTGTA 58.925 41.667 0.00 0.00 0.00 2.74
1705 2168 5.183331 TCACCTGTTAGTAGTGCTTCTGTAG 59.817 44.000 0.00 0.00 0.00 2.74
1706 2169 5.047943 CACCTGTTAGTAGTGCTTCTGTAGT 60.048 44.000 0.00 0.00 0.00 2.73
1717 2180 4.154195 GTGCTTCTGTAGTTACATGGTTGG 59.846 45.833 0.00 0.00 35.36 3.77
1728 2191 2.469952 ACATGGTTGGAATTGGGATGG 58.530 47.619 0.00 0.00 0.00 3.51
1794 2271 6.295236 CCACACAGTAACAAAATTGGGATGAT 60.295 38.462 0.00 0.00 0.00 2.45
1795 2272 7.153985 CACACAGTAACAAAATTGGGATGATT 58.846 34.615 0.00 0.00 0.00 2.57
1796 2273 7.656948 CACACAGTAACAAAATTGGGATGATTT 59.343 33.333 0.00 0.00 0.00 2.17
1797 2274 7.872483 ACACAGTAACAAAATTGGGATGATTTC 59.128 33.333 0.00 0.00 0.00 2.17
1798 2275 7.871973 CACAGTAACAAAATTGGGATGATTTCA 59.128 33.333 0.00 0.00 0.00 2.69
1799 2276 8.090214 ACAGTAACAAAATTGGGATGATTTCAG 58.910 33.333 0.00 0.00 0.00 3.02
1842 2384 5.122239 TGTTGACACATAACTAGCAAGCATC 59.878 40.000 0.00 0.00 0.00 3.91
1860 2402 5.464168 AGCATCAACACAGAATTTTAGCAC 58.536 37.500 0.00 0.00 0.00 4.40
1902 2444 9.895138 AACAAGAACCACTTCTTAAACTTAGTA 57.105 29.630 0.00 0.00 43.70 1.82
1903 2445 9.895138 ACAAGAACCACTTCTTAAACTTAGTAA 57.105 29.630 0.00 0.00 43.70 2.24
1920 2462 4.255833 AGTAAAACAACACCATGCCATG 57.744 40.909 0.00 0.00 0.00 3.66
1923 2465 3.940209 AAACAACACCATGCCATGTAG 57.060 42.857 3.63 0.00 0.00 2.74
1927 2469 4.088634 ACAACACCATGCCATGTAGAATT 58.911 39.130 3.63 0.00 0.00 2.17
1928 2470 5.260424 ACAACACCATGCCATGTAGAATTA 58.740 37.500 3.63 0.00 0.00 1.40
2006 2557 9.727627 AAATGCTGATTACTACGTACTAAGTAC 57.272 33.333 0.00 0.00 35.86 2.73
2007 2558 8.674263 ATGCTGATTACTACGTACTAAGTACT 57.326 34.615 0.00 0.00 36.93 2.73
2008 2559 8.136057 TGCTGATTACTACGTACTAAGTACTC 57.864 38.462 0.00 11.65 36.93 2.59
2036 2596 3.265221 TCACATCCAAGCTGAAGGAATCT 59.735 43.478 6.87 0.00 37.48 2.40
2049 2609 6.457528 GCTGAAGGAATCTTACAAGCACATAC 60.458 42.308 0.00 0.00 35.66 2.39
2080 2879 2.109425 AATAGTGCGGACTTTCCACC 57.891 50.000 16.89 0.00 35.91 4.61
2095 2894 9.185680 GGACTTTCCACCATAAGTTATTATTGT 57.814 33.333 0.00 0.00 36.28 2.71
2117 2916 7.801716 TGTGTGCTTTCTTGTAGTCTTAATT 57.198 32.000 0.00 0.00 0.00 1.40
2120 2919 8.012241 GTGTGCTTTCTTGTAGTCTTAATTCTG 58.988 37.037 0.00 0.00 0.00 3.02
2164 2964 3.925688 TCGCAGCATTTCGATACTTTC 57.074 42.857 0.00 0.00 0.00 2.62
2357 3191 0.877071 CGCCACAGAGCATTTCAGTT 59.123 50.000 0.00 0.00 0.00 3.16
2386 3226 4.378874 GCTGATAAGTTTGCTTCACACTCC 60.379 45.833 0.00 0.00 36.22 3.85
2400 3240 1.338769 ACACTCCGCCATTCTGGTTAC 60.339 52.381 0.00 0.00 40.46 2.50
2447 3288 0.531090 GGACAACCGTGTACTGTGCA 60.531 55.000 0.00 0.00 38.41 4.57
2448 3289 1.508632 GACAACCGTGTACTGTGCAT 58.491 50.000 1.04 0.00 38.41 3.96
2449 3290 2.610976 GGACAACCGTGTACTGTGCATA 60.611 50.000 1.04 0.00 38.41 3.14
2454 3296 4.665833 ACCGTGTACTGTGCATACATAT 57.334 40.909 1.04 0.00 35.11 1.78
2491 3359 6.755141 GCATCCAGTGTTTTACGATTAGTCTA 59.245 38.462 0.00 0.00 0.00 2.59
2495 3363 6.757010 CCAGTGTTTTACGATTAGTCTAGCAT 59.243 38.462 0.00 0.00 0.00 3.79
2606 3474 7.539034 AGGTTTTATTAGCATTCTGGTTGTT 57.461 32.000 0.00 0.00 0.00 2.83
2890 3798 1.980772 GCAATGCCTGTGGAGCCTT 60.981 57.895 0.00 0.00 0.00 4.35
2914 3822 2.202703 GCCGCCGTTGACGTCTAT 60.203 61.111 17.92 0.00 37.74 1.98
3013 3925 2.276732 TTTCTCAGGCACCTCAAAGG 57.723 50.000 0.00 0.00 42.49 3.11
3023 3935 2.031120 CACCTCAAAGGAAACAGCCAA 58.969 47.619 0.00 0.00 37.67 4.52
3025 3937 2.031120 CCTCAAAGGAAACAGCCAACA 58.969 47.619 0.00 0.00 37.67 3.33
3026 3938 2.629617 CCTCAAAGGAAACAGCCAACAT 59.370 45.455 0.00 0.00 37.67 2.71
3029 3941 5.096443 TCAAAGGAAACAGCCAACATTTT 57.904 34.783 0.00 0.00 0.00 1.82
3033 3945 3.960102 AGGAAACAGCCAACATTTTCTCA 59.040 39.130 0.00 0.00 0.00 3.27
3034 3946 4.038402 AGGAAACAGCCAACATTTTCTCAG 59.962 41.667 0.00 0.00 0.00 3.35
3035 3947 4.301628 GAAACAGCCAACATTTTCTCAGG 58.698 43.478 0.00 0.00 0.00 3.86
3036 3948 1.615392 ACAGCCAACATTTTCTCAGGC 59.385 47.619 0.00 0.00 42.31 4.85
3037 3949 1.614903 CAGCCAACATTTTCTCAGGCA 59.385 47.619 0.00 0.00 44.34 4.75
3038 3950 1.615392 AGCCAACATTTTCTCAGGCAC 59.385 47.619 0.00 0.00 44.34 5.01
3039 3951 1.337167 GCCAACATTTTCTCAGGCACC 60.337 52.381 0.00 0.00 41.63 5.01
3041 3953 2.229784 CCAACATTTTCTCAGGCACCTC 59.770 50.000 0.00 0.00 0.00 3.85
3042 3954 2.886523 CAACATTTTCTCAGGCACCTCA 59.113 45.455 0.00 0.00 0.00 3.86
3043 3955 3.228188 ACATTTTCTCAGGCACCTCAA 57.772 42.857 0.00 0.00 0.00 3.02
3044 3956 3.565307 ACATTTTCTCAGGCACCTCAAA 58.435 40.909 0.00 0.00 0.00 2.69
3045 3957 3.571401 ACATTTTCTCAGGCACCTCAAAG 59.429 43.478 0.00 0.00 0.00 2.77
3050 3963 1.882623 CTCAGGCACCTCAAAGGAAAC 59.117 52.381 0.00 0.00 37.67 2.78
3073 3990 1.676014 CCATCTGTCGTTCCCTTGGAC 60.676 57.143 0.00 0.00 0.00 4.02
3090 4007 6.069847 CCCTTGGACTCCCTACACTAAAAATA 60.070 42.308 0.00 0.00 0.00 1.40
3118 4041 6.714810 TCACATACCTGAACAAGCAAAGTATT 59.285 34.615 0.00 0.00 0.00 1.89
3143 4125 2.303890 TCATGTTCATCTGCAGGTCACT 59.696 45.455 15.13 0.00 0.00 3.41
3201 4187 3.018856 GGCATCACCATTCTCATCAACA 58.981 45.455 0.00 0.00 38.86 3.33
3219 4205 0.371301 CAACGACCTGATGATGTGCG 59.629 55.000 0.00 0.00 0.00 5.34
3281 4267 1.884235 CTTTCTTCACCTGGTTCGCT 58.116 50.000 0.00 0.00 0.00 4.93
3416 4437 1.437573 GACCGAGATGCGATGGACA 59.562 57.895 0.00 0.00 44.57 4.02
3417 4438 0.032678 GACCGAGATGCGATGGACAT 59.967 55.000 0.00 0.00 44.57 3.06
3421 4442 2.353109 CCGAGATGCGATGGACATATGT 60.353 50.000 8.43 8.43 44.57 2.29
3467 4488 8.070034 TCGACATTTCTGTAGTAATTAGGGAA 57.930 34.615 0.00 0.00 35.14 3.97
3517 4549 6.985117 TGTGAAGCTCTGCATTTTATTTTCT 58.015 32.000 0.00 0.00 0.00 2.52
3626 4668 2.008329 GAGCTCAAGGTTGCTGATGAG 58.992 52.381 9.40 0.00 39.91 2.90
3694 4740 5.525484 TCTTAGGCCCTGAGATTACTTGTA 58.475 41.667 0.14 0.00 0.00 2.41
3759 4805 1.886542 GTAGGCCCTTGGTTGTTCTTG 59.113 52.381 0.00 0.00 0.00 3.02
3854 4901 6.370994 CCAATAGATGTTGATGCCAGTAGATC 59.629 42.308 0.00 0.00 0.00 2.75
3857 4909 5.938279 AGATGTTGATGCCAGTAGATCAAT 58.062 37.500 0.00 0.00 39.97 2.57
3940 5172 3.383825 TCTGAAGGCTAAGATACCGGTTC 59.616 47.826 15.04 10.67 0.00 3.62
3974 5206 0.610174 TCCGCAATGAAGCTGAGACT 59.390 50.000 0.00 0.00 0.00 3.24
3975 5207 0.725686 CCGCAATGAAGCTGAGACTG 59.274 55.000 0.00 0.00 0.00 3.51
3979 5211 3.058708 CGCAATGAAGCTGAGACTGAAAA 60.059 43.478 0.00 0.00 0.00 2.29
3980 5212 4.379186 CGCAATGAAGCTGAGACTGAAAAT 60.379 41.667 0.00 0.00 0.00 1.82
4255 5500 3.674997 TCACTTTAACTGGTCCATGCTC 58.325 45.455 0.00 0.00 0.00 4.26
4278 5523 1.379576 CTAGGAGGGTTCGTCGGGT 60.380 63.158 0.00 0.00 0.00 5.28
4307 5552 1.106285 CCCCTTGCATTAGACTTGCC 58.894 55.000 0.00 0.00 39.39 4.52
4326 5571 2.688446 GCCTGCCTTTTCTGGTAATACC 59.312 50.000 1.71 1.71 39.22 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.267121 GCTGGTGTCTTCCTAGTGGA 58.733 55.000 0.00 0.00 41.36 4.02
1 2 0.108615 CGCTGGTGTCTTCCTAGTGG 60.109 60.000 0.00 0.00 0.00 4.00
3 4 1.178276 CTCGCTGGTGTCTTCCTAGT 58.822 55.000 0.00 0.00 0.00 2.57
5 6 1.890894 GCTCGCTGGTGTCTTCCTA 59.109 57.895 0.00 0.00 0.00 2.94
6 7 2.659610 GCTCGCTGGTGTCTTCCT 59.340 61.111 0.00 0.00 0.00 3.36
7 8 2.811317 CGCTCGCTGGTGTCTTCC 60.811 66.667 0.00 0.00 0.00 3.46
8 9 1.803519 CTCGCTCGCTGGTGTCTTC 60.804 63.158 0.00 0.00 0.00 2.87
9 10 2.259818 CTCGCTCGCTGGTGTCTT 59.740 61.111 0.00 0.00 0.00 3.01
10 11 4.427661 GCTCGCTCGCTGGTGTCT 62.428 66.667 0.00 0.00 0.00 3.41
13 14 4.862092 ATCGCTCGCTCGCTGGTG 62.862 66.667 0.00 0.00 0.00 4.17
14 15 4.862092 CATCGCTCGCTCGCTGGT 62.862 66.667 0.00 0.00 0.00 4.00
15 16 3.837908 ATCATCGCTCGCTCGCTGG 62.838 63.158 1.48 0.00 0.00 4.85
16 17 2.354422 ATCATCGCTCGCTCGCTG 60.354 61.111 0.00 0.00 0.00 5.18
17 18 2.354422 CATCATCGCTCGCTCGCT 60.354 61.111 0.00 0.00 0.00 4.93
18 19 4.056954 GCATCATCGCTCGCTCGC 62.057 66.667 0.00 0.00 0.00 5.03
19 20 2.354422 AGCATCATCGCTCGCTCG 60.354 61.111 0.00 0.00 37.91 5.03
43 44 3.303761 TACATCACGGTGGGTGGCG 62.304 63.158 8.50 0.00 46.96 5.69
44 45 1.449601 CTACATCACGGTGGGTGGC 60.450 63.158 8.50 0.00 46.96 5.01
45 46 0.391130 CACTACATCACGGTGGGTGG 60.391 60.000 8.50 11.20 46.96 4.61
47 48 1.053424 AACACTACATCACGGTGGGT 58.947 50.000 8.50 9.62 35.53 4.51
48 49 1.270625 ACAACACTACATCACGGTGGG 60.271 52.381 8.50 3.81 35.53 4.61
49 50 2.163818 ACAACACTACATCACGGTGG 57.836 50.000 8.50 0.00 35.53 4.61
50 51 2.869801 ACAACAACACTACATCACGGTG 59.130 45.455 0.56 0.56 37.05 4.94
51 52 3.188159 ACAACAACACTACATCACGGT 57.812 42.857 0.00 0.00 0.00 4.83
52 53 5.856126 ATAACAACAACACTACATCACGG 57.144 39.130 0.00 0.00 0.00 4.94
53 54 9.297586 AGTATATAACAACAACACTACATCACG 57.702 33.333 0.00 0.00 0.00 4.35
58 59 9.767228 ACAACAGTATATAACAACAACACTACA 57.233 29.630 0.00 0.00 0.00 2.74
61 62 9.991906 ACTACAACAGTATATAACAACAACACT 57.008 29.630 0.00 0.00 34.98 3.55
63 64 8.714179 GCACTACAACAGTATATAACAACAACA 58.286 33.333 0.00 0.00 34.98 3.33
64 65 8.932791 AGCACTACAACAGTATATAACAACAAC 58.067 33.333 0.00 0.00 34.98 3.32
65 66 8.931775 CAGCACTACAACAGTATATAACAACAA 58.068 33.333 0.00 0.00 34.98 2.83
66 67 8.092068 ACAGCACTACAACAGTATATAACAACA 58.908 33.333 0.00 0.00 34.98 3.33
67 68 8.475331 ACAGCACTACAACAGTATATAACAAC 57.525 34.615 0.00 0.00 34.98 3.32
68 69 7.762615 GGACAGCACTACAACAGTATATAACAA 59.237 37.037 0.00 0.00 34.98 2.83
69 70 7.123697 AGGACAGCACTACAACAGTATATAACA 59.876 37.037 0.00 0.00 34.98 2.41
70 71 7.490000 AGGACAGCACTACAACAGTATATAAC 58.510 38.462 0.00 0.00 34.98 1.89
71 72 7.655521 AGGACAGCACTACAACAGTATATAA 57.344 36.000 0.00 0.00 34.98 0.98
72 73 8.935614 ATAGGACAGCACTACAACAGTATATA 57.064 34.615 0.00 0.00 34.98 0.86
73 74 7.841282 ATAGGACAGCACTACAACAGTATAT 57.159 36.000 0.00 0.00 34.98 0.86
74 75 7.655521 AATAGGACAGCACTACAACAGTATA 57.344 36.000 0.00 0.00 34.98 1.47
75 76 6.546428 AATAGGACAGCACTACAACAGTAT 57.454 37.500 0.00 0.00 34.98 2.12
76 77 5.995565 AATAGGACAGCACTACAACAGTA 57.004 39.130 0.00 0.00 34.98 2.74
77 78 4.891992 AATAGGACAGCACTACAACAGT 57.108 40.909 0.00 0.00 38.32 3.55
78 79 5.237815 TCAAATAGGACAGCACTACAACAG 58.762 41.667 0.00 0.00 0.00 3.16
79 80 5.222079 TCAAATAGGACAGCACTACAACA 57.778 39.130 0.00 0.00 0.00 3.33
80 81 6.546395 CATTCAAATAGGACAGCACTACAAC 58.454 40.000 0.00 0.00 0.00 3.32
81 82 5.123820 GCATTCAAATAGGACAGCACTACAA 59.876 40.000 0.00 0.00 0.00 2.41
82 83 4.635765 GCATTCAAATAGGACAGCACTACA 59.364 41.667 0.00 0.00 0.00 2.74
83 84 4.878397 AGCATTCAAATAGGACAGCACTAC 59.122 41.667 0.00 0.00 0.00 2.73
84 85 5.102953 AGCATTCAAATAGGACAGCACTA 57.897 39.130 0.00 0.00 0.00 2.74
85 86 3.960571 AGCATTCAAATAGGACAGCACT 58.039 40.909 0.00 0.00 0.00 4.40
86 87 4.708726 AAGCATTCAAATAGGACAGCAC 57.291 40.909 0.00 0.00 0.00 4.40
87 88 5.744171 TCTAAGCATTCAAATAGGACAGCA 58.256 37.500 0.00 0.00 0.00 4.41
88 89 5.277731 GCTCTAAGCATTCAAATAGGACAGC 60.278 44.000 0.00 0.00 41.89 4.40
89 90 6.297694 GCTCTAAGCATTCAAATAGGACAG 57.702 41.667 0.00 0.00 41.89 3.51
104 105 1.002366 CATCCGTGTGTGCTCTAAGC 58.998 55.000 0.00 0.00 42.82 3.09
105 106 2.654749 TCATCCGTGTGTGCTCTAAG 57.345 50.000 0.00 0.00 0.00 2.18
106 107 3.261580 CAATCATCCGTGTGTGCTCTAA 58.738 45.455 0.00 0.00 0.00 2.10
107 108 2.233676 ACAATCATCCGTGTGTGCTCTA 59.766 45.455 0.00 0.00 0.00 2.43
108 109 1.002430 ACAATCATCCGTGTGTGCTCT 59.998 47.619 0.00 0.00 0.00 4.09
109 110 1.442769 ACAATCATCCGTGTGTGCTC 58.557 50.000 0.00 0.00 0.00 4.26
110 111 1.896220 AACAATCATCCGTGTGTGCT 58.104 45.000 0.00 0.00 0.00 4.40
111 112 2.159572 GGTAACAATCATCCGTGTGTGC 60.160 50.000 0.00 0.00 0.00 4.57
112 113 3.740044 GGTAACAATCATCCGTGTGTG 57.260 47.619 0.00 0.00 0.00 3.82
133 134 9.639601 GGCTTCAAGCAGTAATAAAGTAAAAAT 57.360 29.630 12.53 0.00 44.75 1.82
134 135 8.856103 AGGCTTCAAGCAGTAATAAAGTAAAAA 58.144 29.630 12.53 0.00 44.75 1.94
135 136 8.296713 CAGGCTTCAAGCAGTAATAAAGTAAAA 58.703 33.333 12.53 0.00 44.75 1.52
136 137 7.094377 CCAGGCTTCAAGCAGTAATAAAGTAAA 60.094 37.037 12.53 0.00 44.75 2.01
137 138 6.374333 CCAGGCTTCAAGCAGTAATAAAGTAA 59.626 38.462 12.53 0.00 44.75 2.24
138 139 5.880332 CCAGGCTTCAAGCAGTAATAAAGTA 59.120 40.000 12.53 0.00 44.75 2.24
139 140 4.702131 CCAGGCTTCAAGCAGTAATAAAGT 59.298 41.667 12.53 0.00 44.75 2.66
140 141 4.096984 CCCAGGCTTCAAGCAGTAATAAAG 59.903 45.833 12.53 0.00 44.75 1.85
141 142 4.016444 CCCAGGCTTCAAGCAGTAATAAA 58.984 43.478 12.53 0.00 44.75 1.40
142 143 3.265737 TCCCAGGCTTCAAGCAGTAATAA 59.734 43.478 12.53 0.00 44.75 1.40
143 144 2.843730 TCCCAGGCTTCAAGCAGTAATA 59.156 45.455 12.53 0.00 44.75 0.98
144 145 1.635487 TCCCAGGCTTCAAGCAGTAAT 59.365 47.619 12.53 0.00 44.75 1.89
145 146 1.064003 TCCCAGGCTTCAAGCAGTAA 58.936 50.000 12.53 0.00 44.75 2.24
146 147 0.324943 GTCCCAGGCTTCAAGCAGTA 59.675 55.000 12.53 0.00 44.75 2.74
147 148 1.073897 GTCCCAGGCTTCAAGCAGT 59.926 57.895 12.53 0.00 44.75 4.40
148 149 0.251077 AAGTCCCAGGCTTCAAGCAG 60.251 55.000 12.53 2.66 44.75 4.24
149 150 0.538057 CAAGTCCCAGGCTTCAAGCA 60.538 55.000 12.53 0.00 44.75 3.91
150 151 1.871126 GCAAGTCCCAGGCTTCAAGC 61.871 60.000 0.00 0.00 41.46 4.01
151 152 0.538057 TGCAAGTCCCAGGCTTCAAG 60.538 55.000 0.00 0.00 0.00 3.02
152 153 0.106268 TTGCAAGTCCCAGGCTTCAA 60.106 50.000 0.00 0.00 0.00 2.69
153 154 0.106268 TTTGCAAGTCCCAGGCTTCA 60.106 50.000 0.00 0.00 0.00 3.02
154 155 1.039856 TTTTGCAAGTCCCAGGCTTC 58.960 50.000 0.00 0.00 0.00 3.86
155 156 1.494960 TTTTTGCAAGTCCCAGGCTT 58.505 45.000 0.00 0.00 0.00 4.35
156 157 3.222287 TTTTTGCAAGTCCCAGGCT 57.778 47.368 0.00 0.00 0.00 4.58
181 182 0.758123 ATTGGCCGGCCATTAATTGG 59.242 50.000 46.94 0.00 46.64 3.16
182 183 3.742433 TTATTGGCCGGCCATTAATTG 57.258 42.857 46.94 0.00 46.64 2.32
183 184 4.762289 TTTTATTGGCCGGCCATTAATT 57.238 36.364 41.83 29.88 46.64 1.40
184 185 4.972751 ATTTTATTGGCCGGCCATTAAT 57.027 36.364 41.83 36.17 46.64 1.40
185 186 5.141182 TCTATTTTATTGGCCGGCCATTAA 58.859 37.500 46.94 42.74 46.64 1.40
186 187 4.730966 TCTATTTTATTGGCCGGCCATTA 58.269 39.130 46.94 40.37 46.64 1.90
187 188 3.571590 TCTATTTTATTGGCCGGCCATT 58.428 40.909 46.94 41.49 46.64 3.16
188 189 3.237268 TCTATTTTATTGGCCGGCCAT 57.763 42.857 46.94 35.13 46.64 4.40
189 190 2.738587 TCTATTTTATTGGCCGGCCA 57.261 45.000 44.23 44.23 45.63 5.36
190 191 5.715434 TTAATCTATTTTATTGGCCGGCC 57.285 39.130 39.40 39.40 0.00 6.13
191 192 6.589907 CCAATTAATCTATTTTATTGGCCGGC 59.410 38.462 21.18 21.18 32.01 6.13
232 233 8.965819 GGGTTTTTAATCATAAATTGGCCAATT 58.034 29.630 33.50 33.50 42.35 2.32
233 234 7.281999 CGGGTTTTTAATCATAAATTGGCCAAT 59.718 33.333 25.73 25.73 31.33 3.16
234 235 6.595716 CGGGTTTTTAATCATAAATTGGCCAA 59.404 34.615 23.00 23.00 31.33 4.52
235 236 6.109359 CGGGTTTTTAATCATAAATTGGCCA 58.891 36.000 0.00 0.00 31.33 5.36
236 237 5.525745 CCGGGTTTTTAATCATAAATTGGCC 59.474 40.000 0.00 0.00 31.33 5.36
237 238 5.525745 CCCGGGTTTTTAATCATAAATTGGC 59.474 40.000 14.18 0.00 31.33 4.52
238 239 6.645306 ACCCGGGTTTTTAATCATAAATTGG 58.355 36.000 24.16 0.00 31.33 3.16
239 240 7.413548 GCAACCCGGGTTTTTAATCATAAATTG 60.414 37.037 36.59 20.20 36.00 2.32
240 241 6.596106 GCAACCCGGGTTTTTAATCATAAATT 59.404 34.615 36.59 6.84 36.00 1.82
241 242 6.110033 GCAACCCGGGTTTTTAATCATAAAT 58.890 36.000 36.59 7.61 36.00 1.40
242 243 5.480205 GCAACCCGGGTTTTTAATCATAAA 58.520 37.500 36.59 0.00 36.00 1.40
243 244 4.380655 CGCAACCCGGGTTTTTAATCATAA 60.381 41.667 36.59 0.00 36.00 1.90
244 245 3.128938 CGCAACCCGGGTTTTTAATCATA 59.871 43.478 36.59 0.00 36.00 2.15
245 246 2.094442 CGCAACCCGGGTTTTTAATCAT 60.094 45.455 36.59 9.87 36.00 2.45
246 247 1.269998 CGCAACCCGGGTTTTTAATCA 59.730 47.619 36.59 0.00 36.00 2.57
247 248 1.985334 CGCAACCCGGGTTTTTAATC 58.015 50.000 36.59 18.34 36.00 1.75
258 259 1.330521 CTAACAATCATCCGCAACCCG 59.669 52.381 0.00 0.00 0.00 5.28
259 260 2.365582 ACTAACAATCATCCGCAACCC 58.634 47.619 0.00 0.00 0.00 4.11
260 261 4.634443 AGTAACTAACAATCATCCGCAACC 59.366 41.667 0.00 0.00 0.00 3.77
261 262 5.796350 AGTAACTAACAATCATCCGCAAC 57.204 39.130 0.00 0.00 0.00 4.17
262 263 7.101054 AGTAAGTAACTAACAATCATCCGCAA 58.899 34.615 0.00 0.00 36.36 4.85
263 264 6.636705 AGTAAGTAACTAACAATCATCCGCA 58.363 36.000 0.00 0.00 36.36 5.69
264 265 6.074994 CGAGTAAGTAACTAACAATCATCCGC 60.075 42.308 0.00 0.00 39.07 5.54
265 266 6.074994 GCGAGTAAGTAACTAACAATCATCCG 60.075 42.308 0.00 0.00 39.07 4.18
266 267 6.755141 TGCGAGTAAGTAACTAACAATCATCC 59.245 38.462 0.00 0.00 39.07 3.51
267 268 7.751047 TGCGAGTAAGTAACTAACAATCATC 57.249 36.000 0.00 0.00 39.07 2.92
268 269 8.542497 TTTGCGAGTAAGTAACTAACAATCAT 57.458 30.769 0.00 0.00 39.07 2.45
269 270 7.949903 TTTGCGAGTAAGTAACTAACAATCA 57.050 32.000 0.00 0.00 39.07 2.57
296 297 9.665264 CTAACAAAGAAGTAGCGATTTCTTTTT 57.335 29.630 21.69 19.63 44.68 1.94
297 298 9.052759 TCTAACAAAGAAGTAGCGATTTCTTTT 57.947 29.630 21.69 13.94 44.68 2.27
298 299 8.603242 TCTAACAAAGAAGTAGCGATTTCTTT 57.397 30.769 19.54 19.54 46.70 2.52
299 300 8.603242 TTCTAACAAAGAAGTAGCGATTTCTT 57.397 30.769 10.79 10.79 41.86 2.52
349 355 8.887036 ATTTTCCTTTTCTATTTGTGTTGACC 57.113 30.769 0.00 0.00 0.00 4.02
376 382 8.721478 TGCATTACTTTCACTCAATCTCTTTAC 58.279 33.333 0.00 0.00 0.00 2.01
377 383 8.721478 GTGCATTACTTTCACTCAATCTCTTTA 58.279 33.333 0.00 0.00 0.00 1.85
378 384 7.446625 AGTGCATTACTTTCACTCAATCTCTTT 59.553 33.333 0.00 0.00 36.42 2.52
379 385 6.939163 AGTGCATTACTTTCACTCAATCTCTT 59.061 34.615 0.00 0.00 36.42 2.85
380 386 6.370994 CAGTGCATTACTTTCACTCAATCTCT 59.629 38.462 0.00 0.00 38.85 3.10
381 387 6.541086 CAGTGCATTACTTTCACTCAATCTC 58.459 40.000 0.00 0.00 38.85 2.75
382 388 5.106396 GCAGTGCATTACTTTCACTCAATCT 60.106 40.000 11.09 0.00 38.85 2.40
383 389 5.091431 GCAGTGCATTACTTTCACTCAATC 58.909 41.667 11.09 0.00 38.85 2.67
412 421 2.322830 CGGCAGCATCATGGATCCG 61.323 63.158 7.39 0.00 0.00 4.18
454 463 1.305219 TATGCCTCGCACCAAAGCAC 61.305 55.000 0.00 0.00 43.04 4.40
483 492 1.060842 CAAAACCGTGTTCGTGTTCGA 59.939 47.619 0.00 0.00 44.66 3.71
484 493 1.448722 CAAAACCGTGTTCGTGTTCG 58.551 50.000 0.00 0.00 32.52 3.95
485 494 1.185189 GCAAAACCGTGTTCGTGTTC 58.815 50.000 0.00 0.00 32.52 3.18
486 495 0.806241 AGCAAAACCGTGTTCGTGTT 59.194 45.000 0.00 0.00 34.09 3.32
487 496 0.806241 AAGCAAAACCGTGTTCGTGT 59.194 45.000 0.00 0.00 35.01 4.49
488 497 1.187715 CAAGCAAAACCGTGTTCGTG 58.812 50.000 0.00 0.00 35.01 4.35
489 498 0.524604 GCAAGCAAAACCGTGTTCGT 60.525 50.000 0.00 0.00 35.01 3.85
511 520 0.325296 TCACCCTCCTTCACGCCTAT 60.325 55.000 0.00 0.00 0.00 2.57
547 556 2.202932 CCCGTCCGATCTTGCCAG 60.203 66.667 0.00 0.00 0.00 4.85
551 560 1.815421 CTTGGCCCGTCCGATCTTG 60.815 63.158 0.00 0.00 37.80 3.02
554 568 2.202892 GACTTGGCCCGTCCGATC 60.203 66.667 0.00 0.00 37.80 3.69
923 962 4.562552 GGTTTTGGGGGATTTATGTGTGTG 60.563 45.833 0.00 0.00 0.00 3.82
925 964 3.055458 GGGTTTTGGGGGATTTATGTGTG 60.055 47.826 0.00 0.00 0.00 3.82
926 965 3.178046 GGGTTTTGGGGGATTTATGTGT 58.822 45.455 0.00 0.00 0.00 3.72
928 967 2.840511 GGGGTTTTGGGGGATTTATGT 58.159 47.619 0.00 0.00 0.00 2.29
973 1374 0.181587 TCGGCTAGAGGAGTCAGAGG 59.818 60.000 0.00 0.00 0.00 3.69
978 1379 2.836793 GCGGTCGGCTAGAGGAGTC 61.837 68.421 0.00 0.00 39.11 3.36
1009 1415 3.061848 CGCGAGCCACCCCAAAAT 61.062 61.111 0.00 0.00 0.00 1.82
1454 1878 1.003051 GAGAGGGAAGGGGGCACTA 59.997 63.158 0.00 0.00 0.00 2.74
1460 1884 0.327000 AGATGTGGAGAGGGAAGGGG 60.327 60.000 0.00 0.00 0.00 4.79
1464 1888 4.171234 AGAAAGAAGATGTGGAGAGGGAA 58.829 43.478 0.00 0.00 0.00 3.97
1469 1894 2.840651 GGGGAGAAAGAAGATGTGGAGA 59.159 50.000 0.00 0.00 0.00 3.71
1534 1960 5.409520 TCTGCTTTCAGTGCTACTGTAAATG 59.590 40.000 13.59 7.32 46.03 2.32
1535 1961 5.551233 TCTGCTTTCAGTGCTACTGTAAAT 58.449 37.500 13.59 0.00 46.03 1.40
1538 1964 4.675408 CGATCTGCTTTCAGTGCTACTGTA 60.675 45.833 13.59 4.46 46.03 2.74
1539 1965 3.594134 GATCTGCTTTCAGTGCTACTGT 58.406 45.455 13.59 0.00 46.03 3.55
1541 1967 2.493675 TCGATCTGCTTTCAGTGCTACT 59.506 45.455 0.00 0.00 41.10 2.57
1542 1968 2.881074 TCGATCTGCTTTCAGTGCTAC 58.119 47.619 0.00 0.00 41.10 3.58
1547 1973 2.102252 GAGGGATCGATCTGCTTTCAGT 59.898 50.000 23.96 0.00 41.10 3.41
1614 2048 7.177878 TCCCTGAATTCTTTCTTAGCTGAAAT 58.822 34.615 7.05 0.00 35.68 2.17
1657 2112 4.265073 CAGACAGGGTCTAGAAATTTGGG 58.735 47.826 0.00 0.00 41.37 4.12
1672 2127 1.620819 ACTAACAGGTGAGCAGACAGG 59.379 52.381 0.00 0.00 0.00 4.00
1696 2159 4.575885 TCCAACCATGTAACTACAGAAGC 58.424 43.478 0.00 0.00 39.92 3.86
1703 2166 5.522315 TCCCAATTCCAACCATGTAACTA 57.478 39.130 0.00 0.00 0.00 2.24
1704 2167 4.396357 TCCCAATTCCAACCATGTAACT 57.604 40.909 0.00 0.00 0.00 2.24
1705 2168 4.141959 CCATCCCAATTCCAACCATGTAAC 60.142 45.833 0.00 0.00 0.00 2.50
1706 2169 4.029520 CCATCCCAATTCCAACCATGTAA 58.970 43.478 0.00 0.00 0.00 2.41
1794 2271 3.662759 ACCCTGAACCTGAAACTGAAA 57.337 42.857 0.00 0.00 0.00 2.69
1795 2272 3.662759 AACCCTGAACCTGAAACTGAA 57.337 42.857 0.00 0.00 0.00 3.02
1796 2273 3.202151 AGAAACCCTGAACCTGAAACTGA 59.798 43.478 0.00 0.00 0.00 3.41
1797 2274 3.316308 CAGAAACCCTGAACCTGAAACTG 59.684 47.826 0.00 0.00 45.78 3.16
1798 2275 3.053619 ACAGAAACCCTGAACCTGAAACT 60.054 43.478 0.00 0.00 45.78 2.66
1799 2276 3.288092 ACAGAAACCCTGAACCTGAAAC 58.712 45.455 0.00 0.00 45.78 2.78
1842 2384 4.386652 GCATGGTGCTAAAATTCTGTGTTG 59.613 41.667 0.00 0.00 40.96 3.33
1860 2402 2.835580 TGTTTGGTGAATTGGCATGG 57.164 45.000 0.00 0.00 0.00 3.66
1902 2444 3.894427 TCTACATGGCATGGTGTTGTTTT 59.106 39.130 29.49 9.30 33.60 2.43
1903 2445 3.495331 TCTACATGGCATGGTGTTGTTT 58.505 40.909 29.49 10.00 33.60 2.83
1904 2446 3.153369 TCTACATGGCATGGTGTTGTT 57.847 42.857 29.49 10.72 33.60 2.83
1920 2462 5.348986 TGATCACTGCCGAGTTAATTCTAC 58.651 41.667 0.00 0.00 0.00 2.59
1923 2465 3.557595 CCTGATCACTGCCGAGTTAATTC 59.442 47.826 0.00 0.00 0.00 2.17
1927 2469 1.476891 GTCCTGATCACTGCCGAGTTA 59.523 52.381 0.00 0.00 0.00 2.24
1928 2470 0.247736 GTCCTGATCACTGCCGAGTT 59.752 55.000 0.00 0.00 0.00 3.01
2003 2554 5.005779 CAGCTTGGATGTGAAATACGAGTAC 59.994 44.000 0.00 0.00 0.00 2.73
2004 2555 5.105513 TCAGCTTGGATGTGAAATACGAGTA 60.106 40.000 0.00 0.00 0.00 2.59
2005 2556 3.935203 CAGCTTGGATGTGAAATACGAGT 59.065 43.478 0.00 0.00 0.00 4.18
2006 2557 4.183865 TCAGCTTGGATGTGAAATACGAG 58.816 43.478 0.00 0.00 0.00 4.18
2007 2558 4.200838 TCAGCTTGGATGTGAAATACGA 57.799 40.909 0.00 0.00 0.00 3.43
2008 2559 4.201851 CCTTCAGCTTGGATGTGAAATACG 60.202 45.833 0.00 0.00 30.00 3.06
2036 2596 4.215399 GCAAGTTGGAGTATGTGCTTGTAA 59.785 41.667 4.75 0.00 36.62 2.41
2072 2871 9.787532 CACACAATAATAACTTATGGTGGAAAG 57.212 33.333 14.33 2.30 46.85 2.62
2095 2894 7.307989 GCAGAATTAAGACTACAAGAAAGCACA 60.308 37.037 0.00 0.00 0.00 4.57
2106 2905 7.891183 TCTGTCTTTGCAGAATTAAGACTAC 57.109 36.000 22.36 4.73 44.98 2.73
2107 2906 7.065085 GCATCTGTCTTTGCAGAATTAAGACTA 59.935 37.037 22.36 14.23 46.93 2.59
2108 2907 6.128063 GCATCTGTCTTTGCAGAATTAAGACT 60.128 38.462 22.36 6.31 46.93 3.24
2109 2908 6.026513 GCATCTGTCTTTGCAGAATTAAGAC 58.973 40.000 17.52 17.52 46.93 3.01
2120 2919 3.244814 CAGATACGAGCATCTGTCTTTGC 59.755 47.826 14.27 0.00 44.59 3.68
2164 2964 4.576993 GCCAAATCAAAGGGCGTG 57.423 55.556 0.00 0.00 38.04 5.34
2357 3191 2.449464 AGCAAACTTATCAGCATGCCA 58.551 42.857 15.66 0.78 36.16 4.92
2400 3240 3.173668 TCACACTATTCCGAATTCCCG 57.826 47.619 0.00 0.00 0.00 5.14
2434 3275 7.309920 TGTATATATGTATGCACAGTACACGG 58.690 38.462 0.84 0.00 38.30 4.94
2462 3304 2.805671 TCGTAAAACACTGGATGCACAG 59.194 45.455 2.91 2.91 44.03 3.66
2543 3411 4.502171 AGACAGCTGAGATGATATCACG 57.498 45.455 23.35 0.00 0.00 4.35
2589 3457 6.211184 TGAATTCCAACAACCAGAATGCTAAT 59.789 34.615 2.27 0.00 30.80 1.73
2606 3474 7.094248 CCATTAATCACACTGTTCTGAATTCCA 60.094 37.037 2.27 0.00 0.00 3.53
2689 3566 1.819632 GCTATCCCCAACACTGGCG 60.820 63.158 0.00 0.00 41.99 5.69
2760 3639 9.064706 CATCCTAAGTCTAATTGCATCAAAGAT 57.935 33.333 0.00 0.00 0.00 2.40
3013 3925 4.301628 CCTGAGAAAATGTTGGCTGTTTC 58.698 43.478 0.00 0.00 0.00 2.78
3023 3935 2.957402 TGAGGTGCCTGAGAAAATGT 57.043 45.000 0.00 0.00 0.00 2.71
3025 3937 3.160269 CCTTTGAGGTGCCTGAGAAAAT 58.840 45.455 0.00 0.00 0.00 1.82
3026 3938 2.174639 TCCTTTGAGGTGCCTGAGAAAA 59.825 45.455 0.00 0.00 36.53 2.29
3029 3941 1.434188 TTCCTTTGAGGTGCCTGAGA 58.566 50.000 0.00 0.00 36.53 3.27
3033 3945 1.986882 CTGTTTCCTTTGAGGTGCCT 58.013 50.000 0.00 0.00 36.53 4.75
3034 3946 0.315251 GCTGTTTCCTTTGAGGTGCC 59.685 55.000 0.00 0.00 36.53 5.01
3035 3947 0.315251 GGCTGTTTCCTTTGAGGTGC 59.685 55.000 0.00 0.00 36.53 5.01
3036 3948 1.691196 TGGCTGTTTCCTTTGAGGTG 58.309 50.000 0.00 0.00 36.53 4.00
3037 3949 2.108952 AGATGGCTGTTTCCTTTGAGGT 59.891 45.455 0.00 0.00 36.53 3.85
3038 3950 2.490903 CAGATGGCTGTTTCCTTTGAGG 59.509 50.000 0.00 0.00 37.37 3.86
3039 3951 3.844577 CAGATGGCTGTTTCCTTTGAG 57.155 47.619 0.00 0.00 37.37 3.02
3090 4007 6.040842 ACTTTGCTTGTTCAGGTATGTGAAAT 59.959 34.615 0.00 0.00 38.17 2.17
3118 4041 4.005650 GACCTGCAGATGAACATGAGAAA 58.994 43.478 17.39 0.00 0.00 2.52
3143 4125 4.481195 GCAAAGGTCAGTGCTCCA 57.519 55.556 6.89 0.00 37.78 3.86
3201 4187 1.361668 GCGCACATCATCAGGTCGTT 61.362 55.000 0.30 0.00 0.00 3.85
3290 4276 3.782523 TCATGAGGTTAAAGAGGCAGGAT 59.217 43.478 0.00 0.00 0.00 3.24
3388 4404 2.476686 CGCATCTCGGTCGTAAGTACAA 60.477 50.000 0.00 0.00 34.40 2.41
3417 4438 9.642312 GATAATATACGCTATTCGACGAACATA 57.358 33.333 13.38 1.47 41.67 2.29
3421 4442 6.896613 GTCGATAATATACGCTATTCGACGAA 59.103 38.462 13.48 13.48 41.67 3.85
3467 4488 2.486191 CCCTTCCGAGCATCAAAGCTAT 60.486 50.000 0.00 0.00 46.75 2.97
3733 4779 2.916934 ACAACCAAGGGCCTACTGAATA 59.083 45.455 6.41 0.00 0.00 1.75
3759 4805 5.532779 CCAAGGCCCTGAGATTTCTATTTAC 59.467 44.000 1.80 0.00 0.00 2.01
3857 4909 4.580995 TGTAAGATGGTTTTCAGCCGAAAA 59.419 37.500 3.69 3.69 46.41 2.29
3898 5110 7.387119 TCAGATTCCATTTTGTTCAGATCAG 57.613 36.000 0.00 0.00 0.00 2.90
3940 5172 1.635663 GCGGAAGTCGGGTTGTCATG 61.636 60.000 0.00 0.00 39.69 3.07
3974 5206 5.997746 CCCTGACTGAGTAAGAACATTTTCA 59.002 40.000 0.00 0.00 33.72 2.69
3975 5207 6.231211 TCCCTGACTGAGTAAGAACATTTTC 58.769 40.000 0.00 0.00 0.00 2.29
3979 5211 5.825593 TTTCCCTGACTGAGTAAGAACAT 57.174 39.130 0.00 0.00 0.00 2.71
3980 5212 5.544176 AGATTTCCCTGACTGAGTAAGAACA 59.456 40.000 0.00 0.00 0.00 3.18
4061 5298 4.202182 CCGCCTTGGATTGAATTCATGAAT 60.202 41.667 15.36 15.36 42.00 2.57
4278 5523 5.010617 GTCTAATGCAAGGGGTTTCAAGAAA 59.989 40.000 0.00 0.00 0.00 2.52
4307 5552 4.843728 TCAGGTATTACCAGAAAAGGCAG 58.156 43.478 15.19 0.00 41.95 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.