Multiple sequence alignment - TraesCS5B01G365600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G365600 chr5B 100.000 6313 0 0 1 6313 544339974 544333662 0.000000e+00 11659
1 TraesCS5B01G365600 chr5D 94.642 2445 91 14 3896 6313 446407072 446404641 0.000000e+00 3753
2 TraesCS5B01G365600 chr5D 91.961 1331 71 17 707 2028 446409968 446408665 0.000000e+00 1832
3 TraesCS5B01G365600 chr5D 94.891 920 24 15 2946 3861 446407969 446407069 0.000000e+00 1417
4 TraesCS5B01G365600 chr5D 90.837 753 46 12 1934 2667 446408716 446407968 0.000000e+00 987
5 TraesCS5B01G365600 chr5D 80.255 785 52 33 1 715 446410747 446409996 4.400000e-136 496
6 TraesCS5B01G365600 chr5D 97.842 278 6 0 2675 2952 518287009 518286732 1.230000e-131 481
7 TraesCS5B01G365600 chr5A 94.824 2357 87 10 3981 6313 564081292 564078947 0.000000e+00 3644
8 TraesCS5B01G365600 chr5A 91.653 1869 102 19 833 2675 564083939 564082099 0.000000e+00 2538
9 TraesCS5B01G365600 chr5A 96.765 742 22 1 2946 3687 564082104 564081365 0.000000e+00 1236
10 TraesCS5B01G365600 chr5A 100.000 68 0 0 3727 3794 564081364 564081297 6.640000e-25 126
11 TraesCS5B01G365600 chr3B 99.273 275 2 0 2675 2949 99093610 99093884 1.220000e-136 497
12 TraesCS5B01G365600 chr2B 97.578 289 6 1 2673 2961 647735541 647735828 1.580000e-135 494
13 TraesCS5B01G365600 chr6D 98.201 278 5 0 2672 2949 9452374 9452651 2.650000e-133 486
14 TraesCS5B01G365600 chr6D 97.491 279 7 0 2673 2951 407826101 407825823 1.590000e-130 477
15 TraesCS5B01G365600 chr7B 97.857 280 6 0 2672 2951 463843351 463843630 9.520000e-133 484
16 TraesCS5B01G365600 chr7B 96.786 280 9 0 2673 2952 678850381 678850660 9.580000e-128 468
17 TraesCS5B01G365600 chr7D 97.826 276 5 1 2675 2949 353940606 353940331 5.730000e-130 475
18 TraesCS5B01G365600 chr7D 97.133 279 8 0 2673 2951 500626120 500625842 7.410000e-129 472


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G365600 chr5B 544333662 544339974 6312 True 11659 11659 100.0000 1 6313 1 chr5B.!!$R1 6312
1 TraesCS5B01G365600 chr5D 446404641 446410747 6106 True 1697 3753 90.5172 1 6313 5 chr5D.!!$R2 6312
2 TraesCS5B01G365600 chr5A 564078947 564083939 4992 True 1886 3644 95.8105 833 6313 4 chr5A.!!$R1 5480

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
623 693 0.107654 CTTCCAGGGGTTTAGCCGAG 60.108 60.000 0.00 0.00 38.44 4.63 F
642 712 0.108233 GCCGTACGTTTGGGGATGTA 60.108 55.000 15.21 0.00 0.00 2.29 F
798 919 0.316841 ACGATTGCCGGCAATTTGTT 59.683 45.000 45.38 30.61 45.50 2.83 F
2428 2619 0.320771 TCAGAACTTCCTGCCTTCGC 60.321 55.000 0.00 0.00 34.28 4.70 F
2693 2891 0.115349 AGACTAGCCACAGTGGGAGT 59.885 55.000 21.77 2.87 38.19 3.85 F
2700 2898 1.071699 GCCACAGTGGGAGTAACTTCA 59.928 52.381 21.77 0.00 38.19 3.02 F
2704 2902 2.037772 ACAGTGGGAGTAACTTCAGCAG 59.962 50.000 0.00 0.00 0.00 4.24 F
3883 4084 0.106769 TCCTTTCAAGCACCTGCACA 60.107 50.000 0.00 0.00 45.16 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 1719 0.174389 TTCTGAGCAGCTCGATCACC 59.826 55.0 17.81 0.00 34.35 4.02 R
2205 2396 0.322906 AACAGAAGGCTAAGGGCAGC 60.323 55.0 0.00 0.00 44.01 5.25 R
2674 2872 0.115349 ACTCCCACTGTGGCTAGTCT 59.885 55.0 21.47 3.44 35.79 3.24 R
3864 4065 0.106769 TGTGCAGGTGCTTGAAAGGA 60.107 50.0 3.18 0.00 42.66 3.36 R
3865 4066 0.313043 CTGTGCAGGTGCTTGAAAGG 59.687 55.0 3.18 0.00 42.66 3.11 R
3866 4067 0.313043 CCTGTGCAGGTGCTTGAAAG 59.687 55.0 9.96 0.00 43.61 2.62 R
4597 4800 0.465097 CAGGCTGATCACATGGACCC 60.465 60.0 9.42 0.00 0.00 4.46 R
5343 5549 0.396435 TGCCTCAACACACACTAGGG 59.604 55.0 0.00 0.00 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 125 2.869503 AAATCGCGGCTAGTGGTGGG 62.870 60.000 6.13 0.00 0.00 4.61
122 128 4.778143 GCGGCTAGTGGTGGGTGG 62.778 72.222 0.00 0.00 0.00 4.61
123 129 3.319198 CGGCTAGTGGTGGGTGGT 61.319 66.667 0.00 0.00 0.00 4.16
124 130 1.985662 CGGCTAGTGGTGGGTGGTA 60.986 63.158 0.00 0.00 0.00 3.25
125 131 1.905512 GGCTAGTGGTGGGTGGTAG 59.094 63.158 0.00 0.00 0.00 3.18
126 132 0.616679 GGCTAGTGGTGGGTGGTAGA 60.617 60.000 0.00 0.00 0.00 2.59
127 133 1.272807 GCTAGTGGTGGGTGGTAGAA 58.727 55.000 0.00 0.00 0.00 2.10
128 134 1.207329 GCTAGTGGTGGGTGGTAGAAG 59.793 57.143 0.00 0.00 0.00 2.85
129 135 1.831736 CTAGTGGTGGGTGGTAGAAGG 59.168 57.143 0.00 0.00 0.00 3.46
132 154 1.229723 GGTGGGTGGTAGAAGGGGA 60.230 63.158 0.00 0.00 0.00 4.81
147 169 2.585153 GGAGGAAGAAGGGCGGAC 59.415 66.667 0.00 0.00 0.00 4.79
148 170 2.585153 GAGGAAGAAGGGCGGACC 59.415 66.667 0.00 0.00 40.67 4.46
149 171 3.372554 GAGGAAGAAGGGCGGACCG 62.373 68.421 10.29 10.29 46.96 4.79
150 172 4.468689 GGAAGAAGGGCGGACCGG 62.469 72.222 17.22 0.00 46.96 5.28
172 194 3.011517 GAGGCTTCTCCCCAGGCA 61.012 66.667 0.00 0.00 39.31 4.75
173 195 3.334054 AGGCTTCTCCCCAGGCAC 61.334 66.667 0.00 0.00 39.31 5.01
174 196 3.650950 GGCTTCTCCCCAGGCACA 61.651 66.667 0.00 0.00 36.81 4.57
175 197 2.045536 GCTTCTCCCCAGGCACAG 60.046 66.667 0.00 0.00 0.00 3.66
378 417 3.308705 GCCAAGCCAAGCCAAGCT 61.309 61.111 0.00 0.00 42.56 3.74
392 431 1.451067 CAAGCTCAGAGGGAAGCAAG 58.549 55.000 0.00 0.00 0.00 4.01
452 499 0.875728 ACTCCGCGCTATAGCTACTG 59.124 55.000 21.98 10.69 39.32 2.74
455 502 1.444553 CGCGCTATAGCTACTGCCC 60.445 63.158 21.98 4.80 40.80 5.36
456 503 1.444553 GCGCTATAGCTACTGCCCG 60.445 63.158 21.98 5.48 40.80 6.13
457 504 1.444553 CGCTATAGCTACTGCCCGC 60.445 63.158 21.98 0.00 40.80 6.13
470 517 2.809601 CCCGCGGTTCTGTTCGAG 60.810 66.667 26.12 0.00 0.00 4.04
471 518 3.479269 CCGCGGTTCTGTTCGAGC 61.479 66.667 19.50 0.00 0.00 5.03
472 519 3.827784 CGCGGTTCTGTTCGAGCG 61.828 66.667 0.00 0.00 41.56 5.03
473 520 2.430244 GCGGTTCTGTTCGAGCGA 60.430 61.111 0.00 0.00 38.92 4.93
474 521 2.437343 GCGGTTCTGTTCGAGCGAG 61.437 63.158 0.00 0.00 38.92 5.03
478 539 0.456995 GTTCTGTTCGAGCGAGGGAG 60.457 60.000 0.00 0.00 0.00 4.30
500 561 3.533691 CTCTTCGAACGCCGCGTC 61.534 66.667 20.46 11.64 39.99 5.19
501 562 4.331166 TCTTCGAACGCCGCGTCA 62.331 61.111 20.46 3.31 39.99 4.35
502 563 3.179265 CTTCGAACGCCGCGTCAT 61.179 61.111 20.46 3.94 39.99 3.06
503 564 3.126722 CTTCGAACGCCGCGTCATC 62.127 63.158 20.46 13.10 39.99 2.92
504 565 3.620300 TTCGAACGCCGCGTCATCT 62.620 57.895 20.46 2.61 39.99 2.90
505 566 3.607987 CGAACGCCGCGTCATCTC 61.608 66.667 20.46 11.96 39.99 2.75
506 567 3.607987 GAACGCCGCGTCATCTCG 61.608 66.667 20.46 0.94 39.99 4.04
507 568 4.415332 AACGCCGCGTCATCTCGT 62.415 61.111 20.46 0.00 39.99 4.18
508 569 4.831307 ACGCCGCGTCATCTCGTC 62.831 66.667 13.85 0.00 33.69 4.20
511 572 4.175489 CCGCGTCATCTCGTCGGT 62.175 66.667 4.92 0.00 41.51 4.69
512 573 2.202440 CGCGTCATCTCGTCGGTT 60.202 61.111 0.00 0.00 0.00 4.44
513 574 2.215604 CGCGTCATCTCGTCGGTTC 61.216 63.158 0.00 0.00 0.00 3.62
558 619 2.584608 CGGGCTCGGTCCAGATTT 59.415 61.111 0.00 0.00 0.00 2.17
559 620 1.521681 CGGGCTCGGTCCAGATTTC 60.522 63.158 0.00 0.00 0.00 2.17
563 633 1.424493 GCTCGGTCCAGATTTCTGCG 61.424 60.000 1.90 1.52 42.47 5.18
578 648 1.413767 CTGCGGTGAGATTCGTTCGG 61.414 60.000 0.00 0.00 0.00 4.30
581 651 0.801067 CGGTGAGATTCGTTCGGTCC 60.801 60.000 0.00 0.00 0.00 4.46
582 652 0.459759 GGTGAGATTCGTTCGGTCCC 60.460 60.000 0.00 0.00 0.00 4.46
584 654 1.747355 GTGAGATTCGTTCGGTCCCTA 59.253 52.381 0.00 0.00 0.00 3.53
585 655 2.022195 TGAGATTCGTTCGGTCCCTAG 58.978 52.381 0.00 0.00 0.00 3.02
586 656 2.022934 GAGATTCGTTCGGTCCCTAGT 58.977 52.381 0.00 0.00 0.00 2.57
587 657 1.749634 AGATTCGTTCGGTCCCTAGTG 59.250 52.381 0.00 0.00 0.00 2.74
608 678 4.735358 GGGTGGGCGGGTTCTTCC 62.735 72.222 0.00 0.00 0.00 3.46
610 680 2.359975 GTGGGCGGGTTCTTCCAG 60.360 66.667 0.00 0.00 38.11 3.86
622 692 0.545787 TCTTCCAGGGGTTTAGCCGA 60.546 55.000 0.00 0.00 38.44 5.54
623 693 0.107654 CTTCCAGGGGTTTAGCCGAG 60.108 60.000 0.00 0.00 38.44 4.63
642 712 0.108233 GCCGTACGTTTGGGGATGTA 60.108 55.000 15.21 0.00 0.00 2.29
728 849 1.447140 TCCGCCTGGTTTCGATTCG 60.447 57.895 0.00 0.00 36.30 3.34
729 850 2.461110 CCGCCTGGTTTCGATTCGG 61.461 63.158 6.18 0.00 0.00 4.30
730 851 2.791927 GCCTGGTTTCGATTCGGC 59.208 61.111 6.18 0.00 0.00 5.54
731 852 2.761195 GCCTGGTTTCGATTCGGCC 61.761 63.158 6.18 7.18 0.00 6.13
754 875 3.003793 GCTTCCTGTTTCAGTTCCAGTTC 59.996 47.826 0.00 0.00 0.00 3.01
758 879 3.545703 CTGTTTCAGTTCCAGTTCCAGT 58.454 45.455 0.00 0.00 0.00 4.00
759 880 3.541632 TGTTTCAGTTCCAGTTCCAGTC 58.458 45.455 0.00 0.00 0.00 3.51
776 897 1.831736 AGTCGATTTCTGAATCCCGGT 59.168 47.619 0.00 0.00 38.76 5.28
781 902 0.953471 TTTCTGAATCCCGGTGCACG 60.953 55.000 11.45 6.23 43.80 5.34
794 915 2.181525 GCACGATTGCCGGCAATT 59.818 55.556 45.38 32.62 45.50 2.32
796 917 1.685640 GCACGATTGCCGGCAATTTG 61.686 55.000 45.38 40.52 45.50 2.32
797 918 0.388391 CACGATTGCCGGCAATTTGT 60.388 50.000 45.38 40.12 45.50 2.83
798 919 0.316841 ACGATTGCCGGCAATTTGTT 59.683 45.000 45.38 30.61 45.50 2.83
799 920 0.714994 CGATTGCCGGCAATTTGTTG 59.285 50.000 45.38 30.42 45.50 3.33
800 921 1.077915 GATTGCCGGCAATTTGTTGG 58.922 50.000 45.38 0.00 45.50 3.77
803 924 2.316867 GCCGGCAATTTGTTGGCAC 61.317 57.895 24.80 3.03 46.45 5.01
855 978 4.631131 TCTCACTCTGCTCGATTTCAAAA 58.369 39.130 0.00 0.00 0.00 2.44
856 979 4.449068 TCTCACTCTGCTCGATTTCAAAAC 59.551 41.667 0.00 0.00 0.00 2.43
857 980 3.498397 TCACTCTGCTCGATTTCAAAACC 59.502 43.478 0.00 0.00 0.00 3.27
881 1004 2.496291 GCAGGGATCAAGCCATGGC 61.496 63.158 30.12 30.12 39.97 4.40
898 1021 3.449227 CTGGCGTCGGAGCTACCA 61.449 66.667 0.00 0.00 38.90 3.25
899 1022 3.701604 CTGGCGTCGGAGCTACCAC 62.702 68.421 0.00 0.00 38.90 4.16
900 1023 4.509737 GGCGTCGGAGCTACCACC 62.510 72.222 0.00 0.00 38.90 4.61
934 1057 2.990479 CCCAGGGGAAGACGAAGG 59.010 66.667 0.00 0.00 37.50 3.46
1114 1237 1.828660 ACCTACCAGATCGGCCTCG 60.829 63.158 0.00 0.00 39.03 4.63
1180 1303 2.492090 CCTTCCTCTCCTGCGTCG 59.508 66.667 0.00 0.00 0.00 5.12
1233 1356 2.357517 AAGGAGTGCGTCAAGGCG 60.358 61.111 0.00 0.00 35.06 5.52
1290 1413 3.818787 CCGCACATGCCCAAGCTC 61.819 66.667 0.00 0.00 40.80 4.09
1443 1566 2.876645 CCGCTGTTCGAGTCGCTC 60.877 66.667 7.92 3.77 41.67 5.03
1644 1767 1.221213 AGGTCCCTCTCCTGCTCTCT 61.221 60.000 0.00 0.00 33.62 3.10
1647 1770 2.028876 GTCCCTCTCCTGCTCTCTTAC 58.971 57.143 0.00 0.00 0.00 2.34
1814 1950 4.081309 AGCCATTCTGGTCCATCATTTTTG 60.081 41.667 0.00 0.00 40.46 2.44
1880 2016 7.815549 TGGCATGCATCATTAATTGCTATAAAG 59.184 33.333 21.36 0.24 39.60 1.85
1886 2022 9.334693 GCATCATTAATTGCTATAAAGTAGTGC 57.665 33.333 5.09 0.00 35.95 4.40
1896 2032 8.969260 TGCTATAAAGTAGTGCTGTACTAGTA 57.031 34.615 12.68 0.00 43.22 1.82
1990 2126 5.409826 GCTCAGCAGTTTGTAATAACAGAGT 59.590 40.000 0.00 0.00 36.83 3.24
1993 2174 7.892609 TCAGCAGTTTGTAATAACAGAGTCTA 58.107 34.615 0.00 0.00 36.83 2.59
2025 2206 3.070018 GCTGCTCAGTAGTTTGTCACAT 58.930 45.455 0.00 0.00 0.00 3.21
2052 2233 3.500343 ACAACTAGCTTGCCCTGAAAAT 58.500 40.909 0.00 0.00 32.41 1.82
2053 2234 3.507622 ACAACTAGCTTGCCCTGAAAATC 59.492 43.478 0.00 0.00 32.41 2.17
2055 2236 2.041620 ACTAGCTTGCCCTGAAAATCCA 59.958 45.455 0.00 0.00 0.00 3.41
2079 2260 0.657312 TCGCTGTTGCTTGTTCACTG 59.343 50.000 0.00 0.00 36.97 3.66
2106 2287 4.743057 ATGCTTCACACTGCTAGTATGA 57.257 40.909 0.00 0.00 28.32 2.15
2111 2292 5.420725 TTCACACTGCTAGTATGATTGGT 57.579 39.130 0.00 0.00 30.93 3.67
2112 2293 4.758688 TCACACTGCTAGTATGATTGGTG 58.241 43.478 0.00 0.00 24.56 4.17
2134 2317 5.009010 GTGTCTTTCTGCTGGAAATTCAGAA 59.991 40.000 3.15 3.15 42.25 3.02
2226 2417 0.771127 TGCCCTTAGCCTTCTGTTGT 59.229 50.000 0.00 0.00 42.71 3.32
2281 2472 2.093235 GGCTGAAGGTGCTTCTACAGAT 60.093 50.000 0.00 0.00 40.73 2.90
2404 2595 2.360165 CAGCTCTGGATATTTGGTTGCC 59.640 50.000 0.00 0.00 0.00 4.52
2428 2619 0.320771 TCAGAACTTCCTGCCTTCGC 60.321 55.000 0.00 0.00 34.28 4.70
2440 2631 1.004918 CCTTCGCTCCCTTGAACGT 60.005 57.895 0.00 0.00 32.09 3.99
2483 2674 8.579850 AGGTACATACATTGTGAAATTGATGT 57.420 30.769 0.00 2.26 39.48 3.06
2484 2675 8.461222 AGGTACATACATTGTGAAATTGATGTG 58.539 33.333 0.00 0.00 39.48 3.21
2489 2683 5.531634 ACATTGTGAAATTGATGTGGACAC 58.468 37.500 0.00 0.00 31.94 3.67
2490 2684 5.068855 ACATTGTGAAATTGATGTGGACACA 59.931 36.000 7.68 7.68 46.44 3.72
2505 2699 6.784040 TGTGGACACATCTTTTGCATATGCA 61.784 40.000 26.32 26.32 42.28 3.96
2524 2718 3.175929 GCAACACTTACGTTTGTGCTTT 58.824 40.909 16.90 5.86 37.68 3.51
2596 2790 3.245122 TGTGGAAAACTATCCCAGGTTCC 60.245 47.826 0.00 0.00 40.51 3.62
2680 2878 9.915629 AATAACTCACTGTTTGTCTAAGACTAG 57.084 33.333 0.00 0.00 39.89 2.57
2681 2879 5.774630 ACTCACTGTTTGTCTAAGACTAGC 58.225 41.667 0.00 0.00 33.15 3.42
2682 2880 5.135508 TCACTGTTTGTCTAAGACTAGCC 57.864 43.478 0.00 0.00 33.15 3.93
2683 2881 4.587262 TCACTGTTTGTCTAAGACTAGCCA 59.413 41.667 0.00 0.00 33.15 4.75
2684 2882 4.686554 CACTGTTTGTCTAAGACTAGCCAC 59.313 45.833 0.00 0.00 33.15 5.01
2685 2883 4.344102 ACTGTTTGTCTAAGACTAGCCACA 59.656 41.667 0.00 0.00 33.15 4.17
2686 2884 4.883083 TGTTTGTCTAAGACTAGCCACAG 58.117 43.478 0.00 0.00 33.15 3.66
2687 2885 4.344102 TGTTTGTCTAAGACTAGCCACAGT 59.656 41.667 0.00 0.00 33.15 3.55
2688 2886 4.521130 TTGTCTAAGACTAGCCACAGTG 57.479 45.455 0.00 0.00 33.15 3.66
2689 2887 2.826128 TGTCTAAGACTAGCCACAGTGG 59.174 50.000 16.16 16.16 35.45 4.00
2690 2888 2.166664 GTCTAAGACTAGCCACAGTGGG 59.833 54.545 21.77 7.25 38.19 4.61
2691 2889 2.042569 TCTAAGACTAGCCACAGTGGGA 59.957 50.000 21.77 3.56 38.19 4.37
2692 2890 1.270907 AAGACTAGCCACAGTGGGAG 58.729 55.000 21.77 0.00 38.19 4.30
2693 2891 0.115349 AGACTAGCCACAGTGGGAGT 59.885 55.000 21.77 2.87 38.19 3.85
2694 2892 1.358103 AGACTAGCCACAGTGGGAGTA 59.642 52.381 21.77 0.00 38.19 2.59
2695 2893 2.176889 GACTAGCCACAGTGGGAGTAA 58.823 52.381 21.77 0.00 38.19 2.24
2696 2894 1.900486 ACTAGCCACAGTGGGAGTAAC 59.100 52.381 21.77 3.06 38.19 2.50
2697 2895 2.180276 CTAGCCACAGTGGGAGTAACT 58.820 52.381 21.77 10.69 38.19 2.24
2698 2896 1.435256 AGCCACAGTGGGAGTAACTT 58.565 50.000 21.77 0.00 38.19 2.66
2699 2897 1.348036 AGCCACAGTGGGAGTAACTTC 59.652 52.381 21.77 0.78 38.19 3.01
2700 2898 1.071699 GCCACAGTGGGAGTAACTTCA 59.928 52.381 21.77 0.00 38.19 3.02
2701 2899 2.872038 GCCACAGTGGGAGTAACTTCAG 60.872 54.545 21.77 0.00 38.19 3.02
2702 2900 2.417719 CACAGTGGGAGTAACTTCAGC 58.582 52.381 0.00 0.00 0.00 4.26
2703 2901 2.047061 ACAGTGGGAGTAACTTCAGCA 58.953 47.619 0.00 0.00 0.00 4.41
2704 2902 2.037772 ACAGTGGGAGTAACTTCAGCAG 59.962 50.000 0.00 0.00 0.00 4.24
2705 2903 2.037772 CAGTGGGAGTAACTTCAGCAGT 59.962 50.000 0.00 0.00 37.30 4.40
2706 2904 3.258372 CAGTGGGAGTAACTTCAGCAGTA 59.742 47.826 0.00 0.00 32.94 2.74
2707 2905 3.901844 AGTGGGAGTAACTTCAGCAGTAA 59.098 43.478 0.00 0.00 32.94 2.24
2708 2906 3.995048 GTGGGAGTAACTTCAGCAGTAAC 59.005 47.826 0.00 0.00 32.94 2.50
2709 2907 3.901844 TGGGAGTAACTTCAGCAGTAACT 59.098 43.478 0.00 0.00 32.94 2.24
2710 2908 4.347000 TGGGAGTAACTTCAGCAGTAACTT 59.653 41.667 0.00 0.00 32.94 2.66
2711 2909 4.930405 GGGAGTAACTTCAGCAGTAACTTC 59.070 45.833 0.00 0.00 32.94 3.01
2712 2910 5.510861 GGGAGTAACTTCAGCAGTAACTTCA 60.511 44.000 0.00 0.00 32.94 3.02
2713 2911 5.989777 GGAGTAACTTCAGCAGTAACTTCAA 59.010 40.000 0.00 0.00 32.94 2.69
2714 2912 6.146347 GGAGTAACTTCAGCAGTAACTTCAAG 59.854 42.308 0.00 0.00 32.94 3.02
2715 2913 6.583562 AGTAACTTCAGCAGTAACTTCAAGT 58.416 36.000 0.00 0.00 32.94 3.16
2716 2914 5.993106 AACTTCAGCAGTAACTTCAAGTC 57.007 39.130 0.00 0.00 32.94 3.01
2717 2915 4.381411 ACTTCAGCAGTAACTTCAAGTCC 58.619 43.478 0.00 0.00 31.97 3.85
2718 2916 4.141711 ACTTCAGCAGTAACTTCAAGTCCA 60.142 41.667 0.00 0.00 31.97 4.02
2719 2917 4.415881 TCAGCAGTAACTTCAAGTCCAA 57.584 40.909 0.00 0.00 0.00 3.53
2720 2918 4.127171 TCAGCAGTAACTTCAAGTCCAAC 58.873 43.478 0.00 0.00 0.00 3.77
2721 2919 4.130118 CAGCAGTAACTTCAAGTCCAACT 58.870 43.478 0.00 0.00 0.00 3.16
2722 2920 4.212214 CAGCAGTAACTTCAAGTCCAACTC 59.788 45.833 0.00 0.00 0.00 3.01
2723 2921 4.127171 GCAGTAACTTCAAGTCCAACTCA 58.873 43.478 0.00 0.00 0.00 3.41
2724 2922 4.212214 GCAGTAACTTCAAGTCCAACTCAG 59.788 45.833 0.00 0.00 0.00 3.35
2725 2923 4.212214 CAGTAACTTCAAGTCCAACTCAGC 59.788 45.833 0.00 0.00 0.00 4.26
2726 2924 3.281727 AACTTCAAGTCCAACTCAGCA 57.718 42.857 0.00 0.00 0.00 4.41
2727 2925 3.281727 ACTTCAAGTCCAACTCAGCAA 57.718 42.857 0.00 0.00 0.00 3.91
2728 2926 3.620488 ACTTCAAGTCCAACTCAGCAAA 58.380 40.909 0.00 0.00 0.00 3.68
2729 2927 4.210331 ACTTCAAGTCCAACTCAGCAAAT 58.790 39.130 0.00 0.00 0.00 2.32
2730 2928 4.646492 ACTTCAAGTCCAACTCAGCAAATT 59.354 37.500 0.00 0.00 0.00 1.82
2731 2929 5.127682 ACTTCAAGTCCAACTCAGCAAATTT 59.872 36.000 0.00 0.00 0.00 1.82
2732 2930 4.935702 TCAAGTCCAACTCAGCAAATTTG 58.064 39.130 14.03 14.03 0.00 2.32
2733 2931 4.402155 TCAAGTCCAACTCAGCAAATTTGT 59.598 37.500 19.03 3.98 0.00 2.83
2734 2932 4.574599 AGTCCAACTCAGCAAATTTGTC 57.425 40.909 19.03 11.45 0.00 3.18
2735 2933 4.210331 AGTCCAACTCAGCAAATTTGTCT 58.790 39.130 19.03 13.38 0.00 3.41
2736 2934 5.376625 AGTCCAACTCAGCAAATTTGTCTA 58.623 37.500 19.03 4.50 0.00 2.59
2737 2935 6.006449 AGTCCAACTCAGCAAATTTGTCTAT 58.994 36.000 19.03 1.31 0.00 1.98
2738 2936 6.072286 AGTCCAACTCAGCAAATTTGTCTATG 60.072 38.462 19.03 12.62 0.00 2.23
2739 2937 5.769662 TCCAACTCAGCAAATTTGTCTATGT 59.230 36.000 19.03 13.81 0.00 2.29
2740 2938 5.860182 CCAACTCAGCAAATTTGTCTATGTG 59.140 40.000 19.03 14.49 0.00 3.21
2741 2939 5.633830 ACTCAGCAAATTTGTCTATGTGG 57.366 39.130 19.03 11.82 0.00 4.17
2742 2940 4.082571 ACTCAGCAAATTTGTCTATGTGGC 60.083 41.667 19.03 1.86 0.00 5.01
2743 2941 3.825585 TCAGCAAATTTGTCTATGTGGCA 59.174 39.130 19.03 0.00 0.00 4.92
2744 2942 4.280425 TCAGCAAATTTGTCTATGTGGCAA 59.720 37.500 19.03 0.00 38.67 4.52
2745 2943 5.047164 TCAGCAAATTTGTCTATGTGGCAAT 60.047 36.000 19.03 0.00 40.27 3.56
2746 2944 5.062934 CAGCAAATTTGTCTATGTGGCAATG 59.937 40.000 19.03 0.10 40.27 2.82
2747 2945 5.047164 AGCAAATTTGTCTATGTGGCAATGA 60.047 36.000 19.03 0.00 40.27 2.57
2748 2946 5.290158 GCAAATTTGTCTATGTGGCAATGAG 59.710 40.000 19.03 0.00 40.27 2.90
2749 2947 6.392354 CAAATTTGTCTATGTGGCAATGAGT 58.608 36.000 10.15 0.00 40.27 3.41
2750 2948 6.594788 AATTTGTCTATGTGGCAATGAGTT 57.405 33.333 0.00 0.00 40.27 3.01
2751 2949 7.701539 AATTTGTCTATGTGGCAATGAGTTA 57.298 32.000 0.00 0.00 40.27 2.24
2752 2950 7.701539 ATTTGTCTATGTGGCAATGAGTTAA 57.298 32.000 0.00 0.00 40.27 2.01
2753 2951 7.701539 TTTGTCTATGTGGCAATGAGTTAAT 57.298 32.000 0.00 0.00 40.27 1.40
2754 2952 6.682423 TGTCTATGTGGCAATGAGTTAATG 57.318 37.500 0.00 0.00 0.00 1.90
2755 2953 6.413892 TGTCTATGTGGCAATGAGTTAATGA 58.586 36.000 0.00 0.00 0.00 2.57
2756 2954 6.883756 TGTCTATGTGGCAATGAGTTAATGAA 59.116 34.615 0.00 0.00 0.00 2.57
2757 2955 7.066163 TGTCTATGTGGCAATGAGTTAATGAAG 59.934 37.037 0.00 0.00 0.00 3.02
2758 2956 7.280876 GTCTATGTGGCAATGAGTTAATGAAGA 59.719 37.037 0.00 0.00 0.00 2.87
2759 2957 5.885230 TGTGGCAATGAGTTAATGAAGAG 57.115 39.130 0.00 0.00 0.00 2.85
2760 2958 5.559770 TGTGGCAATGAGTTAATGAAGAGA 58.440 37.500 0.00 0.00 0.00 3.10
2761 2959 5.645067 TGTGGCAATGAGTTAATGAAGAGAG 59.355 40.000 0.00 0.00 0.00 3.20
2762 2960 5.877012 GTGGCAATGAGTTAATGAAGAGAGA 59.123 40.000 0.00 0.00 0.00 3.10
2763 2961 6.036953 GTGGCAATGAGTTAATGAAGAGAGAG 59.963 42.308 0.00 0.00 0.00 3.20
2764 2962 5.526846 GGCAATGAGTTAATGAAGAGAGAGG 59.473 44.000 0.00 0.00 0.00 3.69
2765 2963 6.112058 GCAATGAGTTAATGAAGAGAGAGGT 58.888 40.000 0.00 0.00 0.00 3.85
2766 2964 6.036953 GCAATGAGTTAATGAAGAGAGAGGTG 59.963 42.308 0.00 0.00 0.00 4.00
2767 2965 5.667539 TGAGTTAATGAAGAGAGAGGTGG 57.332 43.478 0.00 0.00 0.00 4.61
2768 2966 5.087323 TGAGTTAATGAAGAGAGAGGTGGT 58.913 41.667 0.00 0.00 0.00 4.16
2769 2967 5.544176 TGAGTTAATGAAGAGAGAGGTGGTT 59.456 40.000 0.00 0.00 0.00 3.67
2770 2968 6.043854 AGTTAATGAAGAGAGAGGTGGTTC 57.956 41.667 0.00 0.00 0.00 3.62
2771 2969 5.782845 AGTTAATGAAGAGAGAGGTGGTTCT 59.217 40.000 0.00 0.00 0.00 3.01
2772 2970 6.954684 AGTTAATGAAGAGAGAGGTGGTTCTA 59.045 38.462 0.00 0.00 0.00 2.10
2773 2971 5.930837 AATGAAGAGAGAGGTGGTTCTAG 57.069 43.478 0.00 0.00 0.00 2.43
2774 2972 4.390129 TGAAGAGAGAGGTGGTTCTAGT 57.610 45.455 0.00 0.00 0.00 2.57
2775 2973 5.516059 TGAAGAGAGAGGTGGTTCTAGTA 57.484 43.478 0.00 0.00 0.00 1.82
2776 2974 5.888901 TGAAGAGAGAGGTGGTTCTAGTAA 58.111 41.667 0.00 0.00 0.00 2.24
2777 2975 5.711036 TGAAGAGAGAGGTGGTTCTAGTAAC 59.289 44.000 0.00 0.00 0.00 2.50
2778 2976 5.523883 AGAGAGAGGTGGTTCTAGTAACT 57.476 43.478 0.00 0.00 0.00 2.24
2779 2977 5.894653 AGAGAGAGGTGGTTCTAGTAACTT 58.105 41.667 0.00 0.00 0.00 2.66
2780 2978 7.030234 AGAGAGAGGTGGTTCTAGTAACTTA 57.970 40.000 0.00 0.00 0.00 2.24
2781 2979 7.114095 AGAGAGAGGTGGTTCTAGTAACTTAG 58.886 42.308 0.00 0.00 0.00 2.18
2782 2980 5.653330 AGAGAGGTGGTTCTAGTAACTTAGC 59.347 44.000 0.00 0.00 0.00 3.09
2783 2981 5.581975 AGAGGTGGTTCTAGTAACTTAGCT 58.418 41.667 0.00 0.00 0.00 3.32
2784 2982 6.729428 AGAGGTGGTTCTAGTAACTTAGCTA 58.271 40.000 0.00 0.00 0.00 3.32
2785 2983 6.829811 AGAGGTGGTTCTAGTAACTTAGCTAG 59.170 42.308 0.00 0.00 36.83 3.42
2786 2984 6.492274 AGGTGGTTCTAGTAACTTAGCTAGT 58.508 40.000 0.00 0.00 39.32 2.57
2788 2986 8.112183 AGGTGGTTCTAGTAACTTAGCTAGTTA 58.888 37.037 10.09 10.09 45.22 2.24
2800 2998 8.983307 AACTTAGCTAGTTACTGTAACATCAC 57.017 34.615 27.12 15.70 45.22 3.06
2801 2999 8.118976 ACTTAGCTAGTTACTGTAACATCACA 57.881 34.615 27.12 10.61 41.07 3.58
2802 3000 8.027771 ACTTAGCTAGTTACTGTAACATCACAC 58.972 37.037 27.12 13.16 41.07 3.82
2803 3001 6.340962 AGCTAGTTACTGTAACATCACACA 57.659 37.500 27.12 7.11 41.07 3.72
2804 3002 6.936279 AGCTAGTTACTGTAACATCACACAT 58.064 36.000 27.12 10.64 41.07 3.21
2805 3003 8.063200 AGCTAGTTACTGTAACATCACACATA 57.937 34.615 27.12 11.12 41.07 2.29
2806 3004 8.696374 AGCTAGTTACTGTAACATCACACATAT 58.304 33.333 27.12 9.43 41.07 1.78
2807 3005 8.969267 GCTAGTTACTGTAACATCACACATATC 58.031 37.037 27.12 5.73 41.07 1.63
2810 3008 9.371136 AGTTACTGTAACATCACACATATCAAG 57.629 33.333 27.12 0.00 41.07 3.02
2811 3009 8.604035 GTTACTGTAACATCACACATATCAAGG 58.396 37.037 22.30 0.00 38.52 3.61
2812 3010 5.586243 ACTGTAACATCACACATATCAAGGC 59.414 40.000 0.00 0.00 0.00 4.35
2813 3011 5.495640 TGTAACATCACACATATCAAGGCA 58.504 37.500 0.00 0.00 0.00 4.75
2814 3012 5.942826 TGTAACATCACACATATCAAGGCAA 59.057 36.000 0.00 0.00 0.00 4.52
2815 3013 5.571784 AACATCACACATATCAAGGCAAG 57.428 39.130 0.00 0.00 0.00 4.01
2816 3014 4.847198 ACATCACACATATCAAGGCAAGA 58.153 39.130 0.00 0.00 0.00 3.02
2817 3015 5.443283 ACATCACACATATCAAGGCAAGAT 58.557 37.500 0.00 0.00 0.00 2.40
2818 3016 5.298527 ACATCACACATATCAAGGCAAGATG 59.701 40.000 0.00 0.00 36.24 2.90
2819 3017 5.101648 TCACACATATCAAGGCAAGATGA 57.898 39.130 2.43 0.00 0.00 2.92
2820 3018 5.121105 TCACACATATCAAGGCAAGATGAG 58.879 41.667 2.43 0.00 0.00 2.90
2821 3019 4.880120 CACACATATCAAGGCAAGATGAGT 59.120 41.667 2.43 0.00 0.00 3.41
2822 3020 5.007430 CACACATATCAAGGCAAGATGAGTC 59.993 44.000 2.43 0.00 0.00 3.36
2823 3021 5.104610 ACACATATCAAGGCAAGATGAGTCT 60.105 40.000 2.43 0.00 35.82 3.24
2824 3022 6.098838 ACACATATCAAGGCAAGATGAGTCTA 59.901 38.462 2.43 0.00 33.30 2.59
2825 3023 7.160049 CACATATCAAGGCAAGATGAGTCTAT 58.840 38.462 2.43 0.00 33.30 1.98
2826 3024 8.309656 CACATATCAAGGCAAGATGAGTCTATA 58.690 37.037 2.43 0.00 33.30 1.31
2827 3025 8.530311 ACATATCAAGGCAAGATGAGTCTATAG 58.470 37.037 0.00 0.00 33.30 1.31
2828 3026 5.207110 TCAAGGCAAGATGAGTCTATAGC 57.793 43.478 0.00 0.00 33.30 2.97
2829 3027 4.651045 TCAAGGCAAGATGAGTCTATAGCA 59.349 41.667 0.00 0.00 33.30 3.49
2830 3028 5.306419 TCAAGGCAAGATGAGTCTATAGCAT 59.694 40.000 0.00 0.00 33.30 3.79
2831 3029 6.494835 TCAAGGCAAGATGAGTCTATAGCATA 59.505 38.462 0.00 0.00 33.30 3.14
2832 3030 6.924913 AGGCAAGATGAGTCTATAGCATAA 57.075 37.500 0.00 0.00 33.30 1.90
2833 3031 7.493499 AGGCAAGATGAGTCTATAGCATAAT 57.507 36.000 0.00 0.00 33.30 1.28
2834 3032 8.601047 AGGCAAGATGAGTCTATAGCATAATA 57.399 34.615 0.00 0.00 33.30 0.98
2835 3033 9.040259 AGGCAAGATGAGTCTATAGCATAATAA 57.960 33.333 0.00 0.00 33.30 1.40
2836 3034 9.658799 GGCAAGATGAGTCTATAGCATAATAAA 57.341 33.333 0.00 0.00 33.30 1.40
2857 3055 9.801873 AATAAATGAAGTATTGCATGTTACCAC 57.198 29.630 0.00 0.00 0.00 4.16
2858 3056 6.832520 AATGAAGTATTGCATGTTACCACA 57.167 33.333 0.00 0.00 37.31 4.17
2859 3057 7.408756 AATGAAGTATTGCATGTTACCACAT 57.591 32.000 0.00 0.00 45.18 3.21
2860 3058 8.518430 AATGAAGTATTGCATGTTACCACATA 57.482 30.769 0.00 0.00 42.14 2.29
2861 3059 8.696043 ATGAAGTATTGCATGTTACCACATAT 57.304 30.769 0.00 0.00 42.14 1.78
2862 3060 9.791801 ATGAAGTATTGCATGTTACCACATATA 57.208 29.630 0.00 0.00 42.14 0.86
2863 3061 9.791801 TGAAGTATTGCATGTTACCACATATAT 57.208 29.630 0.00 0.00 42.14 0.86
2865 3063 9.573166 AAGTATTGCATGTTACCACATATATGT 57.427 29.630 12.75 12.75 42.14 2.29
2866 3064 9.573166 AGTATTGCATGTTACCACATATATGTT 57.427 29.630 15.85 5.50 42.14 2.71
2869 3067 8.972458 TTGCATGTTACCACATATATGTTACT 57.028 30.769 15.85 4.09 42.14 2.24
2870 3068 8.972458 TGCATGTTACCACATATATGTTACTT 57.028 30.769 15.85 7.44 42.14 2.24
2871 3069 9.051679 TGCATGTTACCACATATATGTTACTTC 57.948 33.333 15.85 7.66 42.14 3.01
2872 3070 8.504005 GCATGTTACCACATATATGTTACTTCC 58.496 37.037 15.85 3.90 42.14 3.46
2873 3071 8.999431 CATGTTACCACATATATGTTACTTCCC 58.001 37.037 15.85 2.44 42.14 3.97
2874 3072 8.091952 TGTTACCACATATATGTTACTTCCCA 57.908 34.615 15.85 4.81 39.39 4.37
2875 3073 7.988599 TGTTACCACATATATGTTACTTCCCAC 59.011 37.037 15.85 5.91 39.39 4.61
2876 3074 6.824958 ACCACATATATGTTACTTCCCACT 57.175 37.500 15.85 0.00 39.39 4.00
2877 3075 7.924358 ACCACATATATGTTACTTCCCACTA 57.076 36.000 15.85 0.00 39.39 2.74
2878 3076 8.506196 ACCACATATATGTTACTTCCCACTAT 57.494 34.615 15.85 0.00 39.39 2.12
2879 3077 9.610104 ACCACATATATGTTACTTCCCACTATA 57.390 33.333 15.85 0.00 39.39 1.31
2886 3084 9.756571 ATATGTTACTTCCCACTATAGAGGTAG 57.243 37.037 14.29 14.29 0.00 3.18
2887 3085 6.978261 TGTTACTTCCCACTATAGAGGTAGT 58.022 40.000 20.74 20.74 35.34 2.73
2888 3086 8.106017 TGTTACTTCCCACTATAGAGGTAGTA 57.894 38.462 19.39 19.39 33.29 1.82
2889 3087 8.560039 TGTTACTTCCCACTATAGAGGTAGTAA 58.440 37.037 24.67 24.67 33.29 2.24
2890 3088 8.845227 GTTACTTCCCACTATAGAGGTAGTAAC 58.155 40.741 31.13 31.13 40.31 2.50
2891 3089 6.978261 ACTTCCCACTATAGAGGTAGTAACA 58.022 40.000 17.73 0.00 33.29 2.41
2892 3090 7.593653 ACTTCCCACTATAGAGGTAGTAACAT 58.406 38.462 17.73 1.67 33.29 2.71
2893 3091 8.730948 ACTTCCCACTATAGAGGTAGTAACATA 58.269 37.037 17.73 0.00 33.29 2.29
2894 3092 9.233649 CTTCCCACTATAGAGGTAGTAACATAG 57.766 40.741 14.29 0.00 33.29 2.23
2895 3093 8.515927 TCCCACTATAGAGGTAGTAACATAGA 57.484 38.462 14.29 0.00 33.29 1.98
2896 3094 8.604184 TCCCACTATAGAGGTAGTAACATAGAG 58.396 40.741 14.29 0.00 33.29 2.43
2897 3095 8.384718 CCCACTATAGAGGTAGTAACATAGAGT 58.615 40.741 14.29 0.00 33.29 3.24
2907 3105 8.848182 AGGTAGTAACATAGAGTAGTAACATGC 58.152 37.037 0.00 0.00 0.00 4.06
2908 3106 8.081025 GGTAGTAACATAGAGTAGTAACATGCC 58.919 40.741 0.00 0.00 0.00 4.40
2909 3107 7.052142 AGTAACATAGAGTAGTAACATGCCC 57.948 40.000 0.00 0.00 0.00 5.36
2910 3108 5.950544 AACATAGAGTAGTAACATGCCCA 57.049 39.130 0.00 0.00 0.00 5.36
2911 3109 6.500589 AACATAGAGTAGTAACATGCCCAT 57.499 37.500 0.00 0.00 0.00 4.00
2912 3110 5.858381 ACATAGAGTAGTAACATGCCCATG 58.142 41.667 6.71 6.71 44.15 3.66
2926 3124 5.858381 CATGCCCATGTTACTACTCTATGT 58.142 41.667 0.13 0.00 34.23 2.29
2927 3125 5.950544 TGCCCATGTTACTACTCTATGTT 57.049 39.130 0.00 0.00 0.00 2.71
2928 3126 7.441836 CATGCCCATGTTACTACTCTATGTTA 58.558 38.462 0.13 0.00 34.23 2.41
2929 3127 6.812998 TGCCCATGTTACTACTCTATGTTAC 58.187 40.000 0.00 0.00 0.00 2.50
2930 3128 6.610020 TGCCCATGTTACTACTCTATGTTACT 59.390 38.462 0.00 0.00 0.00 2.24
2931 3129 7.781219 TGCCCATGTTACTACTCTATGTTACTA 59.219 37.037 0.00 0.00 0.00 1.82
2932 3130 8.081025 GCCCATGTTACTACTCTATGTTACTAC 58.919 40.741 0.00 0.00 0.00 2.73
2933 3131 8.574737 CCCATGTTACTACTCTATGTTACTACC 58.425 40.741 0.00 0.00 0.00 3.18
2934 3132 8.574737 CCATGTTACTACTCTATGTTACTACCC 58.425 40.741 0.00 0.00 0.00 3.69
2935 3133 9.128404 CATGTTACTACTCTATGTTACTACCCA 57.872 37.037 0.00 0.00 0.00 4.51
2936 3134 9.878737 ATGTTACTACTCTATGTTACTACCCAT 57.121 33.333 0.00 0.00 0.00 4.00
2937 3135 9.705103 TGTTACTACTCTATGTTACTACCCATT 57.295 33.333 0.00 0.00 0.00 3.16
2938 3136 9.962783 GTTACTACTCTATGTTACTACCCATTG 57.037 37.037 0.00 0.00 0.00 2.82
2939 3137 9.705103 TTACTACTCTATGTTACTACCCATTGT 57.295 33.333 0.00 0.00 0.00 2.71
2940 3138 8.008513 ACTACTCTATGTTACTACCCATTGTG 57.991 38.462 0.00 0.00 0.00 3.33
2941 3139 6.235231 ACTCTATGTTACTACCCATTGTGG 57.765 41.667 0.00 0.00 37.25 4.17
2942 3140 5.031066 TCTATGTTACTACCCATTGTGGC 57.969 43.478 0.00 0.00 35.79 5.01
2943 3141 4.719773 TCTATGTTACTACCCATTGTGGCT 59.280 41.667 0.00 0.00 35.79 4.75
2944 3142 5.900699 TCTATGTTACTACCCATTGTGGCTA 59.099 40.000 0.00 0.00 35.79 3.93
2981 3179 4.708726 AAGCAGATGCAATACTTTGTCC 57.291 40.909 7.68 0.00 45.16 4.02
2983 3181 3.944015 AGCAGATGCAATACTTTGTCCTC 59.056 43.478 7.68 0.00 45.16 3.71
3002 3202 7.168219 TGTCCTCAAGCATTAACTCAACTAAT 58.832 34.615 0.00 0.00 0.00 1.73
3136 3336 5.046950 AGCGACTTCTTTTAGGAGAGTTGAT 60.047 40.000 0.00 0.00 0.00 2.57
3158 3358 3.055819 TCCTACACCTTCAGCATCTGTTC 60.056 47.826 0.00 0.00 32.61 3.18
3181 3381 3.578282 TCAGTGGCAGTTCTATCACTTCA 59.422 43.478 0.00 0.00 38.27 3.02
3289 3489 5.221722 GCATGTGGAGATATCAGTCCCTAAA 60.222 44.000 5.32 0.00 31.04 1.85
3613 3813 2.159787 CCTGAGTGCGACGAAAGAATTG 60.160 50.000 0.00 0.00 0.00 2.32
3703 3903 9.003658 CAGGTGATTCTCATAACTTTTAGTTGT 57.996 33.333 2.45 0.00 39.11 3.32
3704 3904 9.574516 AGGTGATTCTCATAACTTTTAGTTGTT 57.425 29.630 2.45 0.00 39.11 2.83
3705 3905 9.612620 GGTGATTCTCATAACTTTTAGTTGTTG 57.387 33.333 2.45 1.36 39.11 3.33
3710 3910 9.730420 TTCTCATAACTTTTAGTTGTTGAAAGC 57.270 29.630 2.45 0.00 39.11 3.51
3711 3911 8.898761 TCTCATAACTTTTAGTTGTTGAAAGCA 58.101 29.630 2.45 0.00 39.11 3.91
3712 3912 9.515020 CTCATAACTTTTAGTTGTTGAAAGCAA 57.485 29.630 2.45 0.00 39.11 3.91
3713 3913 9.515020 TCATAACTTTTAGTTGTTGAAAGCAAG 57.485 29.630 2.45 0.00 39.11 4.01
3714 3914 6.647212 AACTTTTAGTTGTTGAAAGCAAGC 57.353 33.333 0.00 0.00 37.00 4.01
3715 3915 5.719173 ACTTTTAGTTGTTGAAAGCAAGCA 58.281 33.333 0.00 0.00 34.55 3.91
3716 3916 6.162777 ACTTTTAGTTGTTGAAAGCAAGCAA 58.837 32.000 0.00 0.00 34.55 3.91
3717 3917 6.648725 ACTTTTAGTTGTTGAAAGCAAGCAAA 59.351 30.769 0.00 0.00 34.55 3.68
3718 3918 7.334171 ACTTTTAGTTGTTGAAAGCAAGCAAAT 59.666 29.630 0.00 0.00 34.55 2.32
3719 3919 6.826893 TTAGTTGTTGAAAGCAAGCAAATC 57.173 33.333 0.00 0.00 34.01 2.17
3720 3920 5.014808 AGTTGTTGAAAGCAAGCAAATCT 57.985 34.783 0.00 0.00 34.01 2.40
3721 3921 5.045872 AGTTGTTGAAAGCAAGCAAATCTC 58.954 37.500 0.00 0.00 34.01 2.75
3722 3922 4.924305 TGTTGAAAGCAAGCAAATCTCT 57.076 36.364 0.00 0.00 34.01 3.10
3723 3923 5.266733 TGTTGAAAGCAAGCAAATCTCTT 57.733 34.783 0.00 0.00 34.01 2.85
3724 3924 5.663456 TGTTGAAAGCAAGCAAATCTCTTT 58.337 33.333 0.00 0.00 34.01 2.52
3725 3925 5.521010 TGTTGAAAGCAAGCAAATCTCTTTG 59.479 36.000 0.00 0.00 43.81 2.77
3871 4072 8.859090 AGTTACATGATGAATTGTTTCCTTTCA 58.141 29.630 0.00 0.00 34.18 2.69
3872 4073 9.474920 GTTACATGATGAATTGTTTCCTTTCAA 57.525 29.630 0.00 0.00 33.45 2.69
3873 4074 9.695526 TTACATGATGAATTGTTTCCTTTCAAG 57.304 29.630 0.00 0.00 33.45 3.02
3874 4075 6.647895 ACATGATGAATTGTTTCCTTTCAAGC 59.352 34.615 0.00 0.00 33.45 4.01
3875 4076 6.159299 TGATGAATTGTTTCCTTTCAAGCA 57.841 33.333 0.00 0.00 33.45 3.91
3876 4077 5.984926 TGATGAATTGTTTCCTTTCAAGCAC 59.015 36.000 0.00 0.00 33.45 4.40
3877 4078 4.692228 TGAATTGTTTCCTTTCAAGCACC 58.308 39.130 0.00 0.00 0.00 5.01
3878 4079 4.405358 TGAATTGTTTCCTTTCAAGCACCT 59.595 37.500 0.00 0.00 0.00 4.00
3879 4080 3.799281 TTGTTTCCTTTCAAGCACCTG 57.201 42.857 0.00 0.00 0.00 4.00
3880 4081 1.408702 TGTTTCCTTTCAAGCACCTGC 59.591 47.619 0.00 0.00 42.49 4.85
3881 4082 1.408702 GTTTCCTTTCAAGCACCTGCA 59.591 47.619 0.00 0.00 45.16 4.41
3882 4083 1.032014 TTCCTTTCAAGCACCTGCAC 58.968 50.000 0.00 0.00 45.16 4.57
3883 4084 0.106769 TCCTTTCAAGCACCTGCACA 60.107 50.000 0.00 0.00 45.16 4.57
3884 4085 0.313043 CCTTTCAAGCACCTGCACAG 59.687 55.000 0.00 0.00 45.16 3.66
3893 4094 3.518003 CCTGCACAGGCCTATTGC 58.482 61.111 25.32 25.32 42.44 3.56
3907 4108 5.385509 GCCTATTGCCAGTTTAGACAAAA 57.614 39.130 0.00 0.00 0.00 2.44
3908 4109 5.161358 GCCTATTGCCAGTTTAGACAAAAC 58.839 41.667 0.00 0.00 46.61 2.43
3922 4123 4.441792 AGACAAAACAAAGGGCAATTCAC 58.558 39.130 0.00 0.00 0.00 3.18
3927 4128 2.028130 ACAAAGGGCAATTCACGTTGA 58.972 42.857 10.84 0.00 0.00 3.18
4034 4235 4.241590 TCACATGGAAAAATGCTGTGTC 57.758 40.909 0.00 0.00 38.61 3.67
4075 4276 6.706716 TGAACAAACCACGTATGTAAAGATGA 59.293 34.615 0.00 0.00 0.00 2.92
4147 4350 2.044135 GCAACAGCGCACTTACTTTTC 58.956 47.619 11.47 0.00 0.00 2.29
4351 4554 3.334691 CAGGCTTTCTAATTCGACACCA 58.665 45.455 0.00 0.00 0.00 4.17
4471 4674 2.972625 TGCGTAAAAGAGGGTCATGAG 58.027 47.619 0.00 0.00 0.00 2.90
4556 4759 5.071788 AGTTACATTCCAAGTTCAGTGAGGA 59.928 40.000 0.00 0.00 0.00 3.71
4561 4764 1.423395 CAAGTTCAGTGAGGAGTCGC 58.577 55.000 0.00 0.00 0.00 5.19
4580 4783 3.010144 CATCTGGGGTCAAGGGGG 58.990 66.667 0.00 0.00 0.00 5.40
4597 4800 2.052104 GGCCTTCCCGGTTCCATTG 61.052 63.158 0.00 0.00 34.25 2.82
4598 4801 2.052104 GCCTTCCCGGTTCCATTGG 61.052 63.158 0.00 0.00 34.25 3.16
4618 4824 1.661341 GTCCATGTGATCAGCCTGAC 58.339 55.000 0.00 0.00 0.00 3.51
4810 5016 5.245075 TGAACTTTTAAGGGTTATTGCTGGG 59.755 40.000 0.00 0.00 0.00 4.45
5005 5211 0.685097 AGCCGAGCCAAGTCTTTGTA 59.315 50.000 0.00 0.00 32.21 2.41
5093 5299 1.227380 GCCGTCAGAATCGCCATCT 60.227 57.895 0.00 0.00 0.00 2.90
5122 5328 2.298729 TGCATTTAAACTGACCAAGGCC 59.701 45.455 0.00 0.00 0.00 5.19
5155 5361 2.423231 CCCATGCAGGTAATCCACATCA 60.423 50.000 0.00 0.00 32.78 3.07
5174 5380 3.713003 TCATCCATGGACAGTGACTAGT 58.287 45.455 18.99 0.00 0.00 2.57
5177 5383 5.899547 TCATCCATGGACAGTGACTAGTAAT 59.100 40.000 18.99 0.00 0.00 1.89
5178 5384 5.854010 TCCATGGACAGTGACTAGTAATC 57.146 43.478 11.44 0.00 0.00 1.75
5179 5385 4.649674 TCCATGGACAGTGACTAGTAATCC 59.350 45.833 11.44 0.00 0.00 3.01
5180 5386 4.405680 CCATGGACAGTGACTAGTAATCCA 59.594 45.833 5.56 12.75 39.02 3.41
5193 5399 4.021102 AGTAATCCACTCCACCAGTTTG 57.979 45.455 0.00 0.00 30.26 2.93
5204 5410 1.326951 ACCAGTTTGTGCCACCCAAC 61.327 55.000 0.00 0.00 0.00 3.77
5234 5440 3.118629 TCCTGTCTTACTGATGGATGCAC 60.119 47.826 0.00 0.00 0.00 4.57
5339 5545 0.987294 CTCCCTTGTGATGTGACCCT 59.013 55.000 0.00 0.00 0.00 4.34
5340 5546 2.187958 CTCCCTTGTGATGTGACCCTA 58.812 52.381 0.00 0.00 0.00 3.53
5341 5547 2.169352 CTCCCTTGTGATGTGACCCTAG 59.831 54.545 0.00 0.00 0.00 3.02
5342 5548 2.187958 CCCTTGTGATGTGACCCTAGA 58.812 52.381 0.00 0.00 0.00 2.43
5343 5549 2.093447 CCCTTGTGATGTGACCCTAGAC 60.093 54.545 0.00 0.00 0.00 2.59
5344 5550 2.093447 CCTTGTGATGTGACCCTAGACC 60.093 54.545 0.00 0.00 0.00 3.85
5345 5551 1.568504 TGTGATGTGACCCTAGACCC 58.431 55.000 0.00 0.00 0.00 4.46
5373 5579 1.067425 TGTTGAGGCATCAAGCAATGC 60.067 47.619 15.13 0.00 45.96 3.56
5425 5631 0.162933 TTTTCTTGTCGCGACGATGC 59.837 50.000 31.88 10.78 38.42 3.91
5434 5640 0.729478 CGCGACGATGCATACTAGGG 60.729 60.000 0.00 0.00 34.15 3.53
5436 5642 0.313987 CGACGATGCATACTAGGGCA 59.686 55.000 0.00 8.19 45.23 5.36
5509 5715 2.452505 ACTAGGTCTCAGAAGAGGTGC 58.547 52.381 0.00 0.00 42.34 5.01
5519 5725 2.033801 CAGAAGAGGTGCTGGTTGTTTG 59.966 50.000 0.00 0.00 0.00 2.93
5530 5736 3.457234 CTGGTTGTTTGAGCCTTTTTCC 58.543 45.455 0.00 0.00 0.00 3.13
5584 5790 6.455646 GCGTGTCATTGTGTATTAGAAGAAGG 60.456 42.308 0.00 0.00 0.00 3.46
5655 5870 2.091277 CGATCAACGAGCTTGTGAGTTC 59.909 50.000 7.56 7.45 45.77 3.01
5660 5875 4.022329 TCAACGAGCTTGTGAGTTCTATGA 60.022 41.667 7.56 1.93 31.57 2.15
5669 5884 6.018913 GCTTGTGAGTTCTATGATGTGATCAG 60.019 42.308 0.00 0.00 43.53 2.90
5699 5914 6.537660 TCAGTGCTGATGATCTTTGATGTTAG 59.462 38.462 0.00 0.00 34.14 2.34
5779 6007 0.326927 ATGGGTAAACACACGGGGAG 59.673 55.000 0.00 0.00 28.47 4.30
5809 6037 3.138304 TCAGTGCAGTTACATGTTCACC 58.862 45.455 2.30 0.00 0.00 4.02
5827 6055 5.850557 TCACCACATTTTCAAACATGACT 57.149 34.783 0.00 0.00 0.00 3.41
5836 6064 7.439056 ACATTTTCAAACATGACTCATTTCACC 59.561 33.333 0.00 0.00 0.00 4.02
5917 6145 1.202770 ACCAGTGTTGCTTACCCTCAC 60.203 52.381 0.00 0.00 0.00 3.51
6135 6363 7.869429 CCAACAAAGAGCAGTTTTCAGATTTAT 59.131 33.333 0.00 0.00 0.00 1.40
6136 6364 9.252962 CAACAAAGAGCAGTTTTCAGATTTATT 57.747 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.373999 GCGTGCTCTGCTGTCTCTT 60.374 57.895 0.00 0.00 0.00 2.85
15 16 2.261052 GCGTGCTCTGCTGTCTCT 59.739 61.111 0.00 0.00 0.00 3.10
25 26 0.730494 GTGAAAATGGCAGCGTGCTC 60.730 55.000 9.31 1.18 44.28 4.26
26 27 1.286880 GTGAAAATGGCAGCGTGCT 59.713 52.632 9.31 0.00 44.28 4.40
84 90 2.477863 CGATTTGAATTCGAACTGGGCC 60.478 50.000 10.38 0.00 0.00 5.80
119 125 2.249309 TCTTCCTCCCCTTCTACCAC 57.751 55.000 0.00 0.00 0.00 4.16
120 126 2.562214 CCTTCTTCCTCCCCTTCTACCA 60.562 54.545 0.00 0.00 0.00 3.25
122 128 2.120312 CCCTTCTTCCTCCCCTTCTAC 58.880 57.143 0.00 0.00 0.00 2.59
123 129 1.625508 GCCCTTCTTCCTCCCCTTCTA 60.626 57.143 0.00 0.00 0.00 2.10
124 130 0.916845 GCCCTTCTTCCTCCCCTTCT 60.917 60.000 0.00 0.00 0.00 2.85
125 131 1.610327 GCCCTTCTTCCTCCCCTTC 59.390 63.158 0.00 0.00 0.00 3.46
126 132 2.301738 CGCCCTTCTTCCTCCCCTT 61.302 63.158 0.00 0.00 0.00 3.95
127 133 2.689034 CGCCCTTCTTCCTCCCCT 60.689 66.667 0.00 0.00 0.00 4.79
128 134 3.798511 CCGCCCTTCTTCCTCCCC 61.799 72.222 0.00 0.00 0.00 4.81
129 135 2.687566 TCCGCCCTTCTTCCTCCC 60.688 66.667 0.00 0.00 0.00 4.30
132 154 3.391382 CGGTCCGCCCTTCTTCCT 61.391 66.667 0.00 0.00 0.00 3.36
244 266 3.127533 GCAGGCACTTACAGCGGG 61.128 66.667 0.00 0.00 34.60 6.13
245 267 3.127533 GGCAGGCACTTACAGCGG 61.128 66.667 0.00 0.00 34.60 5.52
246 268 3.490759 CGGCAGGCACTTACAGCG 61.491 66.667 0.00 0.00 34.60 5.18
247 269 3.804193 GCGGCAGGCACTTACAGC 61.804 66.667 0.00 0.00 42.87 4.40
370 409 1.989620 CTTCCCTCTGAGCTTGGCT 59.010 57.895 0.00 0.00 43.88 4.75
371 410 1.748500 GCTTCCCTCTGAGCTTGGC 60.749 63.158 0.00 0.00 0.00 4.52
372 411 0.037303 TTGCTTCCCTCTGAGCTTGG 59.963 55.000 0.00 0.00 0.00 3.61
373 412 1.451067 CTTGCTTCCCTCTGAGCTTG 58.549 55.000 0.00 0.00 0.00 4.01
374 413 0.322366 GCTTGCTTCCCTCTGAGCTT 60.322 55.000 0.00 0.00 0.00 3.74
378 417 1.593787 CGAGCTTGCTTCCCTCTGA 59.406 57.895 0.00 0.00 0.00 3.27
406 445 3.993376 TTCGATTCGAACCCGCCCG 62.993 63.158 17.08 6.32 41.05 6.13
407 446 2.125431 TTCGATTCGAACCCGCCC 60.125 61.111 17.08 0.00 41.05 6.13
443 490 2.365095 GAACCGCGGGCAGTAGCTAT 62.365 60.000 31.76 0.00 41.70 2.97
455 502 3.827784 CGCTCGAACAGAACCGCG 61.828 66.667 0.00 0.00 35.34 6.46
456 503 2.430244 TCGCTCGAACAGAACCGC 60.430 61.111 0.00 0.00 0.00 5.68
457 504 1.801913 CCTCGCTCGAACAGAACCG 60.802 63.158 0.00 0.00 0.00 4.44
478 539 2.092882 CGGCGTTCGAAGAGGGTTC 61.093 63.158 0.00 0.00 42.43 3.62
490 551 4.415332 ACGAGATGACGCGGCGTT 62.415 61.111 29.98 15.06 41.37 4.84
498 559 1.403972 GCACGAACCGACGAGATGAC 61.404 60.000 0.00 0.00 37.03 3.06
500 561 2.158959 GGCACGAACCGACGAGATG 61.159 63.158 0.00 0.00 37.03 2.90
501 562 2.181021 GGCACGAACCGACGAGAT 59.819 61.111 0.00 0.00 37.03 2.75
502 563 4.047059 GGGCACGAACCGACGAGA 62.047 66.667 0.00 0.00 37.03 4.04
545 606 0.807667 CCGCAGAAATCTGGACCGAG 60.808 60.000 12.09 0.00 43.94 4.63
551 612 2.322355 ATCTCACCGCAGAAATCTGG 57.678 50.000 12.09 0.00 43.94 3.86
558 619 0.456142 CGAACGAATCTCACCGCAGA 60.456 55.000 0.00 0.00 0.00 4.26
559 620 1.413767 CCGAACGAATCTCACCGCAG 61.414 60.000 0.00 0.00 0.00 5.18
563 633 0.459759 GGGACCGAACGAATCTCACC 60.460 60.000 0.00 0.00 0.00 4.02
582 652 2.797278 CCGCCCACCCTAGCACTAG 61.797 68.421 0.00 0.00 0.00 2.57
587 657 4.484872 GAACCCGCCCACCCTAGC 62.485 72.222 0.00 0.00 0.00 3.42
594 664 3.646715 CCTGGAAGAACCCGCCCA 61.647 66.667 0.00 0.00 38.00 5.36
608 678 2.124695 GGCTCGGCTAAACCCCTG 60.125 66.667 0.00 0.00 33.26 4.45
610 680 2.724273 TACGGCTCGGCTAAACCCC 61.724 63.158 0.00 0.00 33.26 4.95
622 692 1.078708 CATCCCCAAACGTACGGCT 60.079 57.895 21.06 2.93 0.00 5.52
623 693 0.108233 TACATCCCCAAACGTACGGC 60.108 55.000 21.06 0.00 0.00 5.68
728 849 1.172812 AACTGAAACAGGAAGCGGCC 61.173 55.000 0.00 0.00 35.51 6.13
729 850 0.238553 GAACTGAAACAGGAAGCGGC 59.761 55.000 0.00 0.00 35.51 6.53
730 851 0.875059 GGAACTGAAACAGGAAGCGG 59.125 55.000 0.00 0.00 35.51 5.52
731 852 1.532868 CTGGAACTGAAACAGGAAGCG 59.467 52.381 0.00 0.00 35.51 4.68
754 875 2.205074 CGGGATTCAGAAATCGACTGG 58.795 52.381 2.09 0.00 41.94 4.00
758 879 1.742411 GCACCGGGATTCAGAAATCGA 60.742 52.381 6.32 0.00 41.94 3.59
759 880 0.657840 GCACCGGGATTCAGAAATCG 59.342 55.000 6.32 0.00 41.94 3.34
781 902 1.077915 CCAACAAATTGCCGGCAATC 58.922 50.000 45.33 12.69 44.86 2.67
783 904 1.596477 GCCAACAAATTGCCGGCAA 60.596 52.632 41.54 41.54 37.77 4.52
784 905 2.030262 GCCAACAAATTGCCGGCA 59.970 55.556 29.03 29.03 37.77 5.69
785 906 2.030262 TGCCAACAAATTGCCGGC 59.970 55.556 22.73 22.73 38.18 6.13
786 907 0.249826 AAGTGCCAACAAATTGCCGG 60.250 50.000 0.00 0.00 34.17 6.13
787 908 0.860533 CAAGTGCCAACAAATTGCCG 59.139 50.000 0.00 0.00 34.17 5.69
788 909 1.952193 ACAAGTGCCAACAAATTGCC 58.048 45.000 0.00 0.00 34.17 4.52
789 910 2.935201 TGAACAAGTGCCAACAAATTGC 59.065 40.909 0.00 0.00 34.17 3.56
790 911 5.542616 TTTGAACAAGTGCCAACAAATTG 57.457 34.783 0.00 0.00 35.40 2.32
791 912 6.756299 AATTTGAACAAGTGCCAACAAATT 57.244 29.167 0.00 0.00 40.56 1.82
792 913 6.756299 AAATTTGAACAAGTGCCAACAAAT 57.244 29.167 0.00 0.00 38.83 2.32
793 914 6.205464 TCAAAATTTGAACAAGTGCCAACAAA 59.795 30.769 5.87 0.00 36.59 2.83
794 915 5.702670 TCAAAATTTGAACAAGTGCCAACAA 59.297 32.000 5.87 0.00 36.59 2.83
796 917 5.793026 TCAAAATTTGAACAAGTGCCAAC 57.207 34.783 5.87 0.00 36.59 3.77
824 947 1.955778 AGCAGAGTGAGATCGATCCAG 59.044 52.381 21.66 8.63 0.00 3.86
855 978 2.249413 CTTGATCCCTGCAGAGCGGT 62.249 60.000 17.39 0.00 32.22 5.68
856 979 1.523258 CTTGATCCCTGCAGAGCGG 60.523 63.158 17.39 8.37 34.23 5.52
857 980 2.178890 GCTTGATCCCTGCAGAGCG 61.179 63.158 17.39 1.80 0.00 5.03
881 1004 3.449227 TGGTAGCTCCGACGCCAG 61.449 66.667 0.00 0.00 39.52 4.85
888 1011 3.782443 GGGGTGGTGGTAGCTCCG 61.782 72.222 8.39 0.00 39.52 4.63
1065 1188 1.372087 CGATCTTGTTGAGGGCCTGC 61.372 60.000 12.95 2.95 0.00 4.85
1443 1566 1.141881 ATACCTGTTCTGCTCGCCG 59.858 57.895 0.00 0.00 0.00 6.46
1596 1719 0.174389 TTCTGAGCAGCTCGATCACC 59.826 55.000 17.81 0.00 34.35 4.02
1647 1770 8.389603 GGTTCACAATTACAATGCAAATATTGG 58.610 33.333 0.00 0.00 41.29 3.16
1668 1793 1.340017 GCTAGTGCATGAAGGGGTTCA 60.340 52.381 0.00 0.00 39.41 3.18
1669 1794 1.340017 TGCTAGTGCATGAAGGGGTTC 60.340 52.381 0.00 0.00 45.31 3.62
1738 1871 4.394300 GCAAAGCTCTCATCTCAGCTAAAA 59.606 41.667 0.00 0.00 45.58 1.52
1754 1887 6.830873 ACTGAAGATGATAAAAGCAAAGCT 57.169 33.333 0.00 0.00 42.56 3.74
1814 1950 5.185249 TCAACTACCTAGACCATGTTCTGAC 59.815 44.000 2.51 0.00 0.00 3.51
1896 2032 9.670442 TTCCTTCCCATGATACTAGTACTAATT 57.330 33.333 4.31 0.00 0.00 1.40
1904 2040 4.963318 TGCTTCCTTCCCATGATACTAG 57.037 45.455 0.00 0.00 0.00 2.57
1990 2126 8.651389 ACTACTGAGCAGCCATTAAATAATAGA 58.349 33.333 0.00 0.00 0.00 1.98
1993 2174 8.408601 CAAACTACTGAGCAGCCATTAAATAAT 58.591 33.333 0.00 0.00 0.00 1.28
2025 2206 5.811190 TCAGGGCAAGCTAGTTGTATTTTA 58.189 37.500 0.00 0.00 38.55 1.52
2034 2215 2.041620 TGGATTTTCAGGGCAAGCTAGT 59.958 45.455 0.00 0.00 0.00 2.57
2052 2233 2.280797 GCAACAGCGACACCTGGA 60.281 61.111 0.00 0.00 37.16 3.86
2053 2234 1.893808 AAGCAACAGCGACACCTGG 60.894 57.895 0.00 0.00 37.16 4.45
2055 2236 0.748005 AACAAGCAACAGCGACACCT 60.748 50.000 0.00 0.00 0.00 4.00
2079 2260 0.371645 GCAGTGTGAAGCATACTCGC 59.628 55.000 0.00 0.00 33.70 5.03
2106 2287 2.957402 TCCAGCAGAAAGACACCAAT 57.043 45.000 0.00 0.00 0.00 3.16
2179 2369 8.932791 CCTCAAGTTACAACTTACGACATAAAT 58.067 33.333 7.02 0.00 46.89 1.40
2205 2396 0.322906 AACAGAAGGCTAAGGGCAGC 60.323 55.000 0.00 0.00 44.01 5.25
2206 2397 1.271597 ACAACAGAAGGCTAAGGGCAG 60.272 52.381 0.00 0.00 44.01 4.85
2209 2400 2.863809 ACAACAACAGAAGGCTAAGGG 58.136 47.619 0.00 0.00 0.00 3.95
2217 2408 7.489113 ACAGCAAAATAAGAACAACAACAGAAG 59.511 33.333 0.00 0.00 0.00 2.85
2226 2417 4.038642 GGGACCACAGCAAAATAAGAACAA 59.961 41.667 0.00 0.00 0.00 2.83
2281 2472 3.920231 AGTGCTGATGATAAAGCCTGA 57.080 42.857 0.00 0.00 38.71 3.86
2428 2619 5.912955 GTCAAATTTACAACGTTCAAGGGAG 59.087 40.000 0.00 0.00 0.00 4.30
2440 2631 8.927675 ATGTACCTACCTTGTCAAATTTACAA 57.072 30.769 10.66 10.66 35.61 2.41
2483 2674 4.374843 GCATATGCAAAAGATGTGTCCA 57.625 40.909 22.84 0.00 41.59 4.02
2511 2705 6.167685 ACCTATCATACAAAGCACAAACGTA 58.832 36.000 0.00 0.00 0.00 3.57
2513 2707 5.545658 ACCTATCATACAAAGCACAAACG 57.454 39.130 0.00 0.00 0.00 3.60
2524 2718 4.444536 GCACCGGTTTTACCTATCATACA 58.555 43.478 2.97 0.00 35.66 2.29
2582 2776 1.288335 AGTCTCGGAACCTGGGATAGT 59.712 52.381 0.00 0.00 0.00 2.12
2669 2867 2.166664 CCCACTGTGGCTAGTCTTAGAC 59.833 54.545 21.47 3.85 35.79 2.59
2670 2868 2.042569 TCCCACTGTGGCTAGTCTTAGA 59.957 50.000 21.47 6.91 35.79 2.10
2671 2869 2.428890 CTCCCACTGTGGCTAGTCTTAG 59.571 54.545 21.47 4.54 35.79 2.18
2672 2870 2.225293 ACTCCCACTGTGGCTAGTCTTA 60.225 50.000 21.47 0.00 35.79 2.10
2673 2871 1.270907 CTCCCACTGTGGCTAGTCTT 58.729 55.000 21.47 0.00 35.79 3.01
2674 2872 0.115349 ACTCCCACTGTGGCTAGTCT 59.885 55.000 21.47 3.44 35.79 3.24
2675 2873 1.848652 TACTCCCACTGTGGCTAGTC 58.151 55.000 26.56 0.00 35.79 2.59
2676 2874 1.900486 GTTACTCCCACTGTGGCTAGT 59.100 52.381 26.22 26.22 35.79 2.57
2677 2875 2.180276 AGTTACTCCCACTGTGGCTAG 58.820 52.381 21.47 20.51 35.79 3.42
2678 2876 2.320681 AGTTACTCCCACTGTGGCTA 57.679 50.000 21.47 10.31 35.79 3.93
2679 2877 1.348036 GAAGTTACTCCCACTGTGGCT 59.652 52.381 21.47 8.83 35.79 4.75
2680 2878 1.071699 TGAAGTTACTCCCACTGTGGC 59.928 52.381 21.47 6.54 35.79 5.01
2681 2879 2.872038 GCTGAAGTTACTCCCACTGTGG 60.872 54.545 20.01 20.01 37.25 4.17
2682 2880 2.224281 TGCTGAAGTTACTCCCACTGTG 60.224 50.000 0.00 0.00 0.00 3.66
2683 2881 2.037772 CTGCTGAAGTTACTCCCACTGT 59.962 50.000 0.00 0.00 0.00 3.55
2684 2882 2.037772 ACTGCTGAAGTTACTCCCACTG 59.962 50.000 0.00 0.00 34.57 3.66
2685 2883 2.330216 ACTGCTGAAGTTACTCCCACT 58.670 47.619 0.00 0.00 34.57 4.00
2686 2884 2.841442 ACTGCTGAAGTTACTCCCAC 57.159 50.000 0.00 0.00 34.57 4.61
2687 2885 3.901844 AGTTACTGCTGAAGTTACTCCCA 59.098 43.478 1.61 0.00 43.59 4.37
2688 2886 4.538746 AGTTACTGCTGAAGTTACTCCC 57.461 45.455 1.61 0.00 43.59 4.30
2689 2887 5.539048 TGAAGTTACTGCTGAAGTTACTCC 58.461 41.667 7.84 0.00 45.68 3.85
2690 2888 6.702282 ACTTGAAGTTACTGCTGAAGTTACTC 59.298 38.462 7.84 3.50 45.68 2.59
2692 2890 6.073711 GGACTTGAAGTTACTGCTGAAGTTAC 60.074 42.308 0.00 0.00 40.56 2.50
2693 2891 5.989777 GGACTTGAAGTTACTGCTGAAGTTA 59.010 40.000 0.00 0.00 40.56 2.24
2694 2892 4.816925 GGACTTGAAGTTACTGCTGAAGTT 59.183 41.667 0.00 0.00 40.56 2.66
2695 2893 4.141711 TGGACTTGAAGTTACTGCTGAAGT 60.142 41.667 0.00 0.00 43.40 3.01
2696 2894 4.380531 TGGACTTGAAGTTACTGCTGAAG 58.619 43.478 0.00 0.00 0.00 3.02
2697 2895 4.415881 TGGACTTGAAGTTACTGCTGAA 57.584 40.909 0.00 0.00 0.00 3.02
2698 2896 4.127171 GTTGGACTTGAAGTTACTGCTGA 58.873 43.478 0.00 0.00 0.00 4.26
2699 2897 4.130118 AGTTGGACTTGAAGTTACTGCTG 58.870 43.478 0.00 0.00 0.00 4.41
2700 2898 4.141711 TGAGTTGGACTTGAAGTTACTGCT 60.142 41.667 11.60 5.84 0.00 4.24
2701 2899 4.127171 TGAGTTGGACTTGAAGTTACTGC 58.873 43.478 11.60 0.00 0.00 4.40
2702 2900 4.212214 GCTGAGTTGGACTTGAAGTTACTG 59.788 45.833 11.60 2.93 0.00 2.74
2703 2901 4.141711 TGCTGAGTTGGACTTGAAGTTACT 60.142 41.667 0.00 3.96 0.00 2.24
2704 2902 4.127171 TGCTGAGTTGGACTTGAAGTTAC 58.873 43.478 0.00 0.00 0.00 2.50
2705 2903 4.415881 TGCTGAGTTGGACTTGAAGTTA 57.584 40.909 0.00 0.00 0.00 2.24
2706 2904 3.281727 TGCTGAGTTGGACTTGAAGTT 57.718 42.857 0.00 0.00 0.00 2.66
2707 2905 3.281727 TTGCTGAGTTGGACTTGAAGT 57.718 42.857 0.00 0.00 0.00 3.01
2708 2906 4.843220 ATTTGCTGAGTTGGACTTGAAG 57.157 40.909 0.00 0.00 0.00 3.02
2709 2907 5.105392 ACAAATTTGCTGAGTTGGACTTGAA 60.105 36.000 18.12 0.00 0.00 2.69
2710 2908 4.402155 ACAAATTTGCTGAGTTGGACTTGA 59.598 37.500 18.12 0.00 0.00 3.02
2711 2909 4.685924 ACAAATTTGCTGAGTTGGACTTG 58.314 39.130 18.12 0.00 0.00 3.16
2712 2910 4.646492 AGACAAATTTGCTGAGTTGGACTT 59.354 37.500 18.12 0.00 0.00 3.01
2713 2911 4.210331 AGACAAATTTGCTGAGTTGGACT 58.790 39.130 18.12 0.00 0.00 3.85
2714 2912 4.574599 AGACAAATTTGCTGAGTTGGAC 57.425 40.909 18.12 0.00 0.00 4.02
2715 2913 5.769662 ACATAGACAAATTTGCTGAGTTGGA 59.230 36.000 18.12 0.79 0.00 3.53
2716 2914 5.860182 CACATAGACAAATTTGCTGAGTTGG 59.140 40.000 18.12 3.57 0.00 3.77
2717 2915 5.860182 CCACATAGACAAATTTGCTGAGTTG 59.140 40.000 18.12 10.57 0.00 3.16
2718 2916 5.565439 GCCACATAGACAAATTTGCTGAGTT 60.565 40.000 18.12 0.00 0.00 3.01
2719 2917 4.082571 GCCACATAGACAAATTTGCTGAGT 60.083 41.667 18.12 14.11 0.00 3.41
2720 2918 4.082625 TGCCACATAGACAAATTTGCTGAG 60.083 41.667 18.12 13.60 0.00 3.35
2721 2919 3.825585 TGCCACATAGACAAATTTGCTGA 59.174 39.130 18.12 3.65 0.00 4.26
2722 2920 4.177165 TGCCACATAGACAAATTTGCTG 57.823 40.909 18.12 12.32 0.00 4.41
2723 2921 4.870123 TTGCCACATAGACAAATTTGCT 57.130 36.364 18.12 16.84 0.00 3.91
2724 2922 5.170021 TCATTGCCACATAGACAAATTTGC 58.830 37.500 18.12 10.76 0.00 3.68
2725 2923 6.392354 ACTCATTGCCACATAGACAAATTTG 58.608 36.000 16.67 16.67 0.00 2.32
2726 2924 6.594788 ACTCATTGCCACATAGACAAATTT 57.405 33.333 0.00 0.00 0.00 1.82
2727 2925 6.594788 AACTCATTGCCACATAGACAAATT 57.405 33.333 0.00 0.00 0.00 1.82
2728 2926 7.701539 TTAACTCATTGCCACATAGACAAAT 57.298 32.000 0.00 0.00 0.00 2.32
2729 2927 7.392953 TCATTAACTCATTGCCACATAGACAAA 59.607 33.333 0.00 0.00 0.00 2.83
2730 2928 6.883756 TCATTAACTCATTGCCACATAGACAA 59.116 34.615 0.00 0.00 0.00 3.18
2731 2929 6.413892 TCATTAACTCATTGCCACATAGACA 58.586 36.000 0.00 0.00 0.00 3.41
2732 2930 6.925610 TCATTAACTCATTGCCACATAGAC 57.074 37.500 0.00 0.00 0.00 2.59
2733 2931 7.337938 TCTTCATTAACTCATTGCCACATAGA 58.662 34.615 0.00 0.00 0.00 1.98
2734 2932 7.496920 TCTCTTCATTAACTCATTGCCACATAG 59.503 37.037 0.00 0.00 0.00 2.23
2735 2933 7.337938 TCTCTTCATTAACTCATTGCCACATA 58.662 34.615 0.00 0.00 0.00 2.29
2736 2934 6.182627 TCTCTTCATTAACTCATTGCCACAT 58.817 36.000 0.00 0.00 0.00 3.21
2737 2935 5.559770 TCTCTTCATTAACTCATTGCCACA 58.440 37.500 0.00 0.00 0.00 4.17
2738 2936 5.877012 TCTCTCTTCATTAACTCATTGCCAC 59.123 40.000 0.00 0.00 0.00 5.01
2739 2937 6.053632 TCTCTCTTCATTAACTCATTGCCA 57.946 37.500 0.00 0.00 0.00 4.92
2740 2938 5.526846 CCTCTCTCTTCATTAACTCATTGCC 59.473 44.000 0.00 0.00 0.00 4.52
2741 2939 6.036953 CACCTCTCTCTTCATTAACTCATTGC 59.963 42.308 0.00 0.00 0.00 3.56
2742 2940 6.538021 CCACCTCTCTCTTCATTAACTCATTG 59.462 42.308 0.00 0.00 0.00 2.82
2743 2941 6.214412 ACCACCTCTCTCTTCATTAACTCATT 59.786 38.462 0.00 0.00 0.00 2.57
2744 2942 5.723887 ACCACCTCTCTCTTCATTAACTCAT 59.276 40.000 0.00 0.00 0.00 2.90
2745 2943 5.087323 ACCACCTCTCTCTTCATTAACTCA 58.913 41.667 0.00 0.00 0.00 3.41
2746 2944 5.669164 ACCACCTCTCTCTTCATTAACTC 57.331 43.478 0.00 0.00 0.00 3.01
2747 2945 5.782845 AGAACCACCTCTCTCTTCATTAACT 59.217 40.000 0.00 0.00 0.00 2.24
2748 2946 6.043854 AGAACCACCTCTCTCTTCATTAAC 57.956 41.667 0.00 0.00 0.00 2.01
2749 2947 6.954684 ACTAGAACCACCTCTCTCTTCATTAA 59.045 38.462 0.00 0.00 0.00 1.40
2750 2948 6.494952 ACTAGAACCACCTCTCTCTTCATTA 58.505 40.000 0.00 0.00 0.00 1.90
2751 2949 5.337788 ACTAGAACCACCTCTCTCTTCATT 58.662 41.667 0.00 0.00 0.00 2.57
2752 2950 4.941713 ACTAGAACCACCTCTCTCTTCAT 58.058 43.478 0.00 0.00 0.00 2.57
2753 2951 4.390129 ACTAGAACCACCTCTCTCTTCA 57.610 45.455 0.00 0.00 0.00 3.02
2754 2952 5.947566 AGTTACTAGAACCACCTCTCTCTTC 59.052 44.000 0.00 0.00 0.00 2.87
2755 2953 5.894653 AGTTACTAGAACCACCTCTCTCTT 58.105 41.667 0.00 0.00 0.00 2.85
2756 2954 5.523883 AGTTACTAGAACCACCTCTCTCT 57.476 43.478 0.00 0.00 0.00 3.10
2757 2955 6.183360 GCTAAGTTACTAGAACCACCTCTCTC 60.183 46.154 0.00 0.00 0.00 3.20
2758 2956 5.653330 GCTAAGTTACTAGAACCACCTCTCT 59.347 44.000 0.00 0.00 0.00 3.10
2759 2957 5.653330 AGCTAAGTTACTAGAACCACCTCTC 59.347 44.000 0.00 0.00 0.00 3.20
2760 2958 5.581975 AGCTAAGTTACTAGAACCACCTCT 58.418 41.667 0.00 0.00 0.00 3.69
2761 2959 5.918426 AGCTAAGTTACTAGAACCACCTC 57.082 43.478 0.00 0.00 0.00 3.85
2762 2960 6.492274 ACTAGCTAAGTTACTAGAACCACCT 58.508 40.000 18.49 0.00 38.53 4.00
2763 2961 6.772360 ACTAGCTAAGTTACTAGAACCACC 57.228 41.667 18.49 0.00 38.53 4.61
2776 2974 8.027771 GTGTGATGTTACAGTAACTAGCTAAGT 58.972 37.037 21.56 0.00 41.49 2.24
2777 2975 8.027189 TGTGTGATGTTACAGTAACTAGCTAAG 58.973 37.037 21.56 0.00 39.38 2.18
2778 2976 7.888424 TGTGTGATGTTACAGTAACTAGCTAA 58.112 34.615 21.56 3.59 39.38 3.09
2779 2977 7.457024 TGTGTGATGTTACAGTAACTAGCTA 57.543 36.000 21.56 4.25 39.38 3.32
2780 2978 6.340962 TGTGTGATGTTACAGTAACTAGCT 57.659 37.500 21.56 6.57 39.38 3.32
2781 2979 8.873215 ATATGTGTGATGTTACAGTAACTAGC 57.127 34.615 21.56 12.59 39.38 3.42
2784 2982 9.371136 CTTGATATGTGTGATGTTACAGTAACT 57.629 33.333 21.56 9.41 39.38 2.24
2785 2983 8.604035 CCTTGATATGTGTGATGTTACAGTAAC 58.396 37.037 15.58 15.58 39.11 2.50
2786 2984 7.279981 GCCTTGATATGTGTGATGTTACAGTAA 59.720 37.037 0.00 0.00 0.00 2.24
2787 2985 6.761242 GCCTTGATATGTGTGATGTTACAGTA 59.239 38.462 0.00 0.00 0.00 2.74
2788 2986 5.586243 GCCTTGATATGTGTGATGTTACAGT 59.414 40.000 0.00 0.00 0.00 3.55
2789 2987 5.585844 TGCCTTGATATGTGTGATGTTACAG 59.414 40.000 0.00 0.00 0.00 2.74
2790 2988 5.495640 TGCCTTGATATGTGTGATGTTACA 58.504 37.500 0.00 0.00 0.00 2.41
2791 2989 6.316140 TCTTGCCTTGATATGTGTGATGTTAC 59.684 38.462 0.00 0.00 0.00 2.50
2792 2990 6.413892 TCTTGCCTTGATATGTGTGATGTTA 58.586 36.000 0.00 0.00 0.00 2.41
2793 2991 5.255687 TCTTGCCTTGATATGTGTGATGTT 58.744 37.500 0.00 0.00 0.00 2.71
2794 2992 4.847198 TCTTGCCTTGATATGTGTGATGT 58.153 39.130 0.00 0.00 0.00 3.06
2795 2993 5.529800 TCATCTTGCCTTGATATGTGTGATG 59.470 40.000 0.00 0.00 0.00 3.07
2796 2994 5.687780 TCATCTTGCCTTGATATGTGTGAT 58.312 37.500 0.00 0.00 0.00 3.06
2797 2995 5.101648 TCATCTTGCCTTGATATGTGTGA 57.898 39.130 0.00 0.00 0.00 3.58
2798 2996 4.880120 ACTCATCTTGCCTTGATATGTGTG 59.120 41.667 0.00 0.00 0.00 3.82
2799 2997 5.104610 AGACTCATCTTGCCTTGATATGTGT 60.105 40.000 0.00 0.00 0.00 3.72
2800 2998 5.366460 AGACTCATCTTGCCTTGATATGTG 58.634 41.667 0.00 0.00 0.00 3.21
2801 2999 5.627182 AGACTCATCTTGCCTTGATATGT 57.373 39.130 0.00 0.00 0.00 2.29
2802 3000 7.492020 GCTATAGACTCATCTTGCCTTGATATG 59.508 40.741 3.21 0.00 36.29 1.78
2803 3001 7.179872 TGCTATAGACTCATCTTGCCTTGATAT 59.820 37.037 3.21 0.00 36.29 1.63
2804 3002 6.494835 TGCTATAGACTCATCTTGCCTTGATA 59.505 38.462 3.21 0.00 36.29 2.15
2805 3003 5.306419 TGCTATAGACTCATCTTGCCTTGAT 59.694 40.000 3.21 0.00 36.29 2.57
2806 3004 4.651045 TGCTATAGACTCATCTTGCCTTGA 59.349 41.667 3.21 0.00 36.29 3.02
2807 3005 4.953667 TGCTATAGACTCATCTTGCCTTG 58.046 43.478 3.21 0.00 36.29 3.61
2808 3006 5.822132 ATGCTATAGACTCATCTTGCCTT 57.178 39.130 3.21 0.00 36.29 4.35
2809 3007 6.924913 TTATGCTATAGACTCATCTTGCCT 57.075 37.500 3.21 0.00 36.29 4.75
2810 3008 9.658799 TTTATTATGCTATAGACTCATCTTGCC 57.341 33.333 3.21 0.00 36.29 4.52
2850 3048 8.208903 AGTGGGAAGTAACATATATGTGGTAAC 58.791 37.037 18.94 13.91 41.61 2.50
2851 3049 8.326765 AGTGGGAAGTAACATATATGTGGTAA 57.673 34.615 18.94 3.13 41.61 2.85
2852 3050 7.924358 AGTGGGAAGTAACATATATGTGGTA 57.076 36.000 18.94 6.18 41.61 3.25
2853 3051 6.824958 AGTGGGAAGTAACATATATGTGGT 57.175 37.500 18.94 7.17 41.61 4.16
2860 3058 9.756571 CTACCTCTATAGTGGGAAGTAACATAT 57.243 37.037 21.82 2.54 33.22 1.78
2861 3059 8.730948 ACTACCTCTATAGTGGGAAGTAACATA 58.269 37.037 21.82 4.45 34.02 2.29
2862 3060 7.593653 ACTACCTCTATAGTGGGAAGTAACAT 58.406 38.462 21.82 3.60 34.02 2.71
2863 3061 6.978261 ACTACCTCTATAGTGGGAAGTAACA 58.022 40.000 21.82 0.29 34.02 2.41
2864 3062 8.845227 GTTACTACCTCTATAGTGGGAAGTAAC 58.155 40.741 33.17 33.17 43.99 2.50
2865 3063 8.560039 TGTTACTACCTCTATAGTGGGAAGTAA 58.440 37.037 27.07 27.07 38.04 2.24
2866 3064 8.106017 TGTTACTACCTCTATAGTGGGAAGTA 57.894 38.462 21.82 22.01 36.09 2.24
2867 3065 6.978261 TGTTACTACCTCTATAGTGGGAAGT 58.022 40.000 23.48 23.48 36.09 3.01
2868 3066 9.233649 CTATGTTACTACCTCTATAGTGGGAAG 57.766 40.741 21.82 19.36 36.09 3.46
2869 3067 8.952602 TCTATGTTACTACCTCTATAGTGGGAA 58.047 37.037 21.82 10.70 36.09 3.97
2870 3068 8.515927 TCTATGTTACTACCTCTATAGTGGGA 57.484 38.462 21.82 14.49 36.09 4.37
2871 3069 8.384718 ACTCTATGTTACTACCTCTATAGTGGG 58.615 40.741 21.82 16.23 36.09 4.61
2881 3079 8.848182 GCATGTTACTACTCTATGTTACTACCT 58.152 37.037 0.00 0.00 0.00 3.08
2882 3080 8.081025 GGCATGTTACTACTCTATGTTACTACC 58.919 40.741 0.00 0.00 0.00 3.18
2883 3081 8.081025 GGGCATGTTACTACTCTATGTTACTAC 58.919 40.741 0.00 0.00 0.00 2.73
2884 3082 7.781219 TGGGCATGTTACTACTCTATGTTACTA 59.219 37.037 0.00 0.00 0.00 1.82
2885 3083 6.610020 TGGGCATGTTACTACTCTATGTTACT 59.390 38.462 0.00 0.00 0.00 2.24
2886 3084 6.812998 TGGGCATGTTACTACTCTATGTTAC 58.187 40.000 0.00 0.00 0.00 2.50
2887 3085 7.441836 CATGGGCATGTTACTACTCTATGTTA 58.558 38.462 0.00 0.00 34.23 2.41
2888 3086 5.950544 TGGGCATGTTACTACTCTATGTT 57.049 39.130 0.00 0.00 0.00 2.71
2889 3087 5.858381 CATGGGCATGTTACTACTCTATGT 58.142 41.667 0.00 0.00 34.23 2.29
2903 3101 5.858381 ACATAGAGTAGTAACATGGGCATG 58.142 41.667 0.00 0.00 44.15 4.06
2904 3102 6.500589 AACATAGAGTAGTAACATGGGCAT 57.499 37.500 0.00 0.00 0.00 4.40
2905 3103 5.950544 AACATAGAGTAGTAACATGGGCA 57.049 39.130 0.00 0.00 0.00 5.36
2906 3104 7.052142 AGTAACATAGAGTAGTAACATGGGC 57.948 40.000 0.00 0.00 0.00 5.36
2907 3105 8.574737 GGTAGTAACATAGAGTAGTAACATGGG 58.425 40.741 0.00 0.00 0.00 4.00
2908 3106 8.574737 GGGTAGTAACATAGAGTAGTAACATGG 58.425 40.741 0.00 0.00 0.00 3.66
2909 3107 9.128404 TGGGTAGTAACATAGAGTAGTAACATG 57.872 37.037 0.00 0.00 0.00 3.21
2910 3108 9.878737 ATGGGTAGTAACATAGAGTAGTAACAT 57.121 33.333 0.00 0.00 0.00 2.71
2911 3109 9.705103 AATGGGTAGTAACATAGAGTAGTAACA 57.295 33.333 0.00 0.00 0.00 2.41
2912 3110 9.962783 CAATGGGTAGTAACATAGAGTAGTAAC 57.037 37.037 0.00 0.00 0.00 2.50
2913 3111 9.705103 ACAATGGGTAGTAACATAGAGTAGTAA 57.295 33.333 0.00 0.00 0.00 2.24
2914 3112 9.128404 CACAATGGGTAGTAACATAGAGTAGTA 57.872 37.037 0.00 0.00 0.00 1.82
2915 3113 7.069578 CCACAATGGGTAGTAACATAGAGTAGT 59.930 40.741 0.00 0.00 32.67 2.73
2916 3114 7.434492 CCACAATGGGTAGTAACATAGAGTAG 58.566 42.308 0.00 0.00 32.67 2.57
2917 3115 6.183360 GCCACAATGGGTAGTAACATAGAGTA 60.183 42.308 0.00 0.00 38.19 2.59
2918 3116 5.396436 GCCACAATGGGTAGTAACATAGAGT 60.396 44.000 0.00 0.00 38.19 3.24
2919 3117 5.057149 GCCACAATGGGTAGTAACATAGAG 58.943 45.833 0.00 0.00 38.19 2.43
2920 3118 5.031066 GCCACAATGGGTAGTAACATAGA 57.969 43.478 0.00 0.00 38.19 1.98
2932 3130 3.879295 CACATTAGACTAGCCACAATGGG 59.121 47.826 7.83 1.38 38.19 4.00
2933 3131 3.313526 GCACATTAGACTAGCCACAATGG 59.686 47.826 7.83 0.00 41.55 3.16
2934 3132 3.940852 TGCACATTAGACTAGCCACAATG 59.059 43.478 0.00 0.00 33.75 2.82
2935 3133 4.194640 CTGCACATTAGACTAGCCACAAT 58.805 43.478 0.00 0.00 0.00 2.71
2936 3134 3.599343 CTGCACATTAGACTAGCCACAA 58.401 45.455 0.00 0.00 0.00 3.33
2937 3135 2.093500 CCTGCACATTAGACTAGCCACA 60.093 50.000 0.00 0.00 0.00 4.17
2938 3136 2.168521 TCCTGCACATTAGACTAGCCAC 59.831 50.000 0.00 0.00 0.00 5.01
2939 3137 2.466846 TCCTGCACATTAGACTAGCCA 58.533 47.619 0.00 0.00 0.00 4.75
2940 3138 3.543680 TTCCTGCACATTAGACTAGCC 57.456 47.619 0.00 0.00 0.00 3.93
2941 3139 3.311048 GCTTTCCTGCACATTAGACTAGC 59.689 47.826 0.00 0.00 0.00 3.42
2942 3140 4.507710 TGCTTTCCTGCACATTAGACTAG 58.492 43.478 0.00 0.00 38.12 2.57
2943 3141 4.222810 TCTGCTTTCCTGCACATTAGACTA 59.777 41.667 0.00 0.00 38.12 2.59
2944 3142 3.008375 TCTGCTTTCCTGCACATTAGACT 59.992 43.478 0.00 0.00 38.12 3.24
3136 3336 2.540383 ACAGATGCTGAAGGTGTAGGA 58.460 47.619 0.82 0.00 35.18 2.94
3158 3358 3.883830 AGTGATAGAACTGCCACTGAG 57.116 47.619 0.00 0.00 38.32 3.35
3181 3381 5.728741 AGACAATGGGGATCTCTTCTTTACT 59.271 40.000 0.00 0.00 0.00 2.24
3289 3489 4.511527 CAAGATCTGGCACTGTATTCTGT 58.488 43.478 0.00 0.00 0.00 3.41
3400 3600 5.853936 TCTTGTTTATCATCCATAGGGTCG 58.146 41.667 0.00 0.00 34.93 4.79
3592 3792 1.714794 ATTCTTTCGTCGCACTCAGG 58.285 50.000 0.00 0.00 0.00 3.86
3613 3813 3.298686 AGTTGCTTCCTAATAAGGGCC 57.701 47.619 0.00 0.00 43.84 5.80
3703 3903 5.904941 TCAAAGAGATTTGCTTGCTTTCAA 58.095 33.333 0.00 0.00 32.23 2.69
3704 3904 5.518848 TCAAAGAGATTTGCTTGCTTTCA 57.481 34.783 0.00 0.00 32.23 2.69
3705 3905 6.388278 AGATCAAAGAGATTTGCTTGCTTTC 58.612 36.000 0.00 0.00 37.00 2.62
3706 3906 6.342338 AGATCAAAGAGATTTGCTTGCTTT 57.658 33.333 0.00 0.00 37.00 3.51
3707 3907 5.979288 AGATCAAAGAGATTTGCTTGCTT 57.021 34.783 0.00 0.00 37.00 3.91
3708 3908 5.243283 ACAAGATCAAAGAGATTTGCTTGCT 59.757 36.000 15.14 6.07 36.43 3.91
3709 3909 5.467705 ACAAGATCAAAGAGATTTGCTTGC 58.532 37.500 15.14 0.00 36.43 4.01
3710 3910 7.143340 TCAACAAGATCAAAGAGATTTGCTTG 58.857 34.615 14.27 14.27 37.00 4.01
3711 3911 7.281040 TCAACAAGATCAAAGAGATTTGCTT 57.719 32.000 0.00 0.00 37.00 3.91
3712 3912 6.889301 TCAACAAGATCAAAGAGATTTGCT 57.111 33.333 0.00 0.00 37.00 3.91
3713 3913 8.530269 AATTCAACAAGATCAAAGAGATTTGC 57.470 30.769 0.00 0.00 37.00 3.68
3718 3918 9.003658 GGAGTTAATTCAACAAGATCAAAGAGA 57.996 33.333 0.03 0.00 39.81 3.10
3719 3919 9.007901 AGGAGTTAATTCAACAAGATCAAAGAG 57.992 33.333 0.03 0.00 39.81 2.85
3720 3920 8.924511 AGGAGTTAATTCAACAAGATCAAAGA 57.075 30.769 0.03 0.00 39.81 2.52
3721 3921 9.971922 AAAGGAGTTAATTCAACAAGATCAAAG 57.028 29.630 0.03 0.00 39.81 2.77
3722 3922 9.965824 GAAAGGAGTTAATTCAACAAGATCAAA 57.034 29.630 0.03 0.00 39.81 2.69
3723 3923 9.354673 AGAAAGGAGTTAATTCAACAAGATCAA 57.645 29.630 0.03 0.00 39.81 2.57
3724 3924 8.924511 AGAAAGGAGTTAATTCAACAAGATCA 57.075 30.769 0.03 0.00 39.81 2.92
3851 4052 6.647895 GTGCTTGAAAGGAAACAATTCATCAT 59.352 34.615 0.00 0.00 37.97 2.45
3858 4059 3.493176 GCAGGTGCTTGAAAGGAAACAAT 60.493 43.478 0.00 0.00 38.21 2.71
3861 4062 1.408702 TGCAGGTGCTTGAAAGGAAAC 59.591 47.619 3.18 0.00 42.66 2.78
3862 4063 1.408702 GTGCAGGTGCTTGAAAGGAAA 59.591 47.619 3.18 0.00 42.66 3.13
3863 4064 1.032014 GTGCAGGTGCTTGAAAGGAA 58.968 50.000 3.18 0.00 42.66 3.36
3864 4065 0.106769 TGTGCAGGTGCTTGAAAGGA 60.107 50.000 3.18 0.00 42.66 3.36
3865 4066 0.313043 CTGTGCAGGTGCTTGAAAGG 59.687 55.000 3.18 0.00 42.66 3.11
3866 4067 0.313043 CCTGTGCAGGTGCTTGAAAG 59.687 55.000 9.96 0.00 43.61 2.62
3867 4068 2.417978 CCTGTGCAGGTGCTTGAAA 58.582 52.632 9.96 0.00 43.61 2.69
3868 4069 4.162592 CCTGTGCAGGTGCTTGAA 57.837 55.556 9.96 0.00 43.61 2.69
3885 4086 5.161358 GTTTTGTCTAAACTGGCAATAGGC 58.839 41.667 3.05 0.00 42.32 3.93
3886 4087 6.325919 TGTTTTGTCTAAACTGGCAATAGG 57.674 37.500 10.54 0.00 45.18 2.57
3887 4088 7.382218 CCTTTGTTTTGTCTAAACTGGCAATAG 59.618 37.037 10.54 0.00 45.18 1.73
3888 4089 7.206687 CCTTTGTTTTGTCTAAACTGGCAATA 58.793 34.615 10.54 0.00 45.18 1.90
3889 4090 6.048509 CCTTTGTTTTGTCTAAACTGGCAAT 58.951 36.000 10.54 0.00 45.18 3.56
3890 4091 5.415221 CCTTTGTTTTGTCTAAACTGGCAA 58.585 37.500 10.54 0.00 45.18 4.52
3891 4092 4.142049 CCCTTTGTTTTGTCTAAACTGGCA 60.142 41.667 10.54 0.00 45.18 4.92
3892 4093 4.368315 CCCTTTGTTTTGTCTAAACTGGC 58.632 43.478 10.54 0.00 45.18 4.85
3893 4094 4.142049 TGCCCTTTGTTTTGTCTAAACTGG 60.142 41.667 10.54 9.51 45.18 4.00
3894 4095 5.004922 TGCCCTTTGTTTTGTCTAAACTG 57.995 39.130 10.54 2.72 45.18 3.16
3895 4096 5.669164 TTGCCCTTTGTTTTGTCTAAACT 57.331 34.783 10.54 0.00 45.18 2.66
3896 4097 6.536941 TGAATTGCCCTTTGTTTTGTCTAAAC 59.463 34.615 3.29 3.29 45.17 2.01
3897 4098 6.536941 GTGAATTGCCCTTTGTTTTGTCTAAA 59.463 34.615 0.00 0.00 0.00 1.85
3898 4099 6.045955 GTGAATTGCCCTTTGTTTTGTCTAA 58.954 36.000 0.00 0.00 0.00 2.10
3899 4100 5.596845 GTGAATTGCCCTTTGTTTTGTCTA 58.403 37.500 0.00 0.00 0.00 2.59
3900 4101 4.441792 GTGAATTGCCCTTTGTTTTGTCT 58.558 39.130 0.00 0.00 0.00 3.41
3901 4102 3.245048 CGTGAATTGCCCTTTGTTTTGTC 59.755 43.478 0.00 0.00 0.00 3.18
3902 4103 3.194062 CGTGAATTGCCCTTTGTTTTGT 58.806 40.909 0.00 0.00 0.00 2.83
3903 4104 3.194062 ACGTGAATTGCCCTTTGTTTTG 58.806 40.909 0.00 0.00 0.00 2.44
3904 4105 3.535280 ACGTGAATTGCCCTTTGTTTT 57.465 38.095 0.00 0.00 0.00 2.43
3905 4106 3.118956 TCAACGTGAATTGCCCTTTGTTT 60.119 39.130 0.00 0.00 0.00 2.83
3906 4107 2.428890 TCAACGTGAATTGCCCTTTGTT 59.571 40.909 0.00 0.00 0.00 2.83
3907 4108 2.028130 TCAACGTGAATTGCCCTTTGT 58.972 42.857 0.00 0.00 0.00 2.83
3908 4109 2.791383 TCAACGTGAATTGCCCTTTG 57.209 45.000 0.00 0.00 0.00 2.77
3909 4110 5.659440 ATTATCAACGTGAATTGCCCTTT 57.341 34.783 0.00 0.00 0.00 3.11
3943 4144 6.487331 TGGTAACCATTAACGTGAATTCTTGT 59.513 34.615 7.05 2.19 0.00 3.16
4147 4350 4.962155 ACTCCTACAAGAAACAGGTGAAG 58.038 43.478 0.00 0.00 0.00 3.02
4471 4674 0.813821 GAGCATGGGCCTTCAGAAAC 59.186 55.000 4.53 0.00 42.56 2.78
4556 4759 4.148825 GACCCCAGATGCGCGACT 62.149 66.667 12.10 2.05 0.00 4.18
4561 4764 2.124570 CCCTTGACCCCAGATGCG 60.125 66.667 0.00 0.00 0.00 4.73
4580 4783 2.052104 CCAATGGAACCGGGAAGGC 61.052 63.158 6.32 0.00 46.52 4.35
4597 4800 0.465097 CAGGCTGATCACATGGACCC 60.465 60.000 9.42 0.00 0.00 4.46
4598 4801 0.543277 TCAGGCTGATCACATGGACC 59.457 55.000 14.43 0.00 0.00 4.46
4774 4980 5.108027 CCTTAAAAGTTCATTTGCCGTTTCG 60.108 40.000 0.00 0.00 0.00 3.46
4810 5016 3.782889 AACTTTGTGTCAAGGAACTGC 57.217 42.857 0.00 0.00 40.86 4.40
4838 5044 0.918983 TGAATCCAAGGTAGGGCCAG 59.081 55.000 6.18 0.00 40.61 4.85
5005 5211 2.780094 CCTCTGTGCTCTCGCGGAT 61.780 63.158 6.13 0.00 37.46 4.18
5155 5361 5.305644 GGATTACTAGTCACTGTCCATGGAT 59.694 44.000 19.62 1.85 0.00 3.41
5174 5380 3.750371 CACAAACTGGTGGAGTGGATTA 58.250 45.455 0.00 0.00 34.02 1.75
5177 5383 0.465460 GCACAAACTGGTGGAGTGGA 60.465 55.000 0.00 0.00 39.19 4.02
5178 5384 1.455383 GGCACAAACTGGTGGAGTGG 61.455 60.000 0.00 0.00 39.19 4.00
5179 5385 0.751277 TGGCACAAACTGGTGGAGTG 60.751 55.000 0.00 0.00 39.19 3.51
5180 5386 0.751643 GTGGCACAAACTGGTGGAGT 60.752 55.000 13.86 0.00 44.16 3.85
5204 5410 5.182001 CCATCAGTAAGACAGGAAACCAAAG 59.818 44.000 0.00 0.00 0.00 2.77
5218 5424 2.715749 TGGGTGCATCCATCAGTAAG 57.284 50.000 16.81 0.00 38.11 2.34
5305 5511 4.177026 CAAGGGAGAAGTACTTCACATCG 58.823 47.826 31.80 12.24 41.84 3.84
5339 5545 3.162666 CCTCAACACACACTAGGGTCTA 58.837 50.000 0.00 0.00 0.00 2.59
5340 5546 1.971357 CCTCAACACACACTAGGGTCT 59.029 52.381 0.00 0.00 0.00 3.85
5341 5547 1.608283 GCCTCAACACACACTAGGGTC 60.608 57.143 0.00 0.00 0.00 4.46
5342 5548 0.396811 GCCTCAACACACACTAGGGT 59.603 55.000 0.00 0.00 0.00 4.34
5343 5549 0.396435 TGCCTCAACACACACTAGGG 59.604 55.000 0.00 0.00 0.00 3.53
5344 5550 2.289631 TGATGCCTCAACACACACTAGG 60.290 50.000 0.00 0.00 0.00 3.02
5345 5551 3.044235 TGATGCCTCAACACACACTAG 57.956 47.619 0.00 0.00 0.00 2.57
5373 5579 1.072331 ACTAGAACACCACTGCAAGGG 59.928 52.381 9.46 5.84 39.30 3.95
5425 5631 2.942710 CGGTAATCGTGCCCTAGTATG 58.057 52.381 0.00 0.00 0.00 2.39
5509 5715 3.132824 AGGAAAAAGGCTCAAACAACCAG 59.867 43.478 0.00 0.00 0.00 4.00
5519 5725 5.687730 CGAGAAAAGAAAAGGAAAAAGGCTC 59.312 40.000 0.00 0.00 0.00 4.70
5634 5849 1.702886 ACTCACAAGCTCGTTGATCG 58.297 50.000 0.00 0.00 38.60 3.69
5655 5870 6.073711 GCACTGACATTCTGATCACATCATAG 60.074 42.308 0.00 0.00 38.85 2.23
5660 5875 3.939592 CAGCACTGACATTCTGATCACAT 59.060 43.478 0.00 0.00 0.00 3.21
5669 5884 5.353400 TCAAAGATCATCAGCACTGACATTC 59.647 40.000 1.71 0.56 43.11 2.67
5699 5914 8.443937 CACTGAAAAGAAAGCATAAGTAGGTAC 58.556 37.037 0.00 0.00 0.00 3.34
5779 6007 2.829741 AACTGCACTGAGTCCTTCTC 57.170 50.000 0.00 0.00 43.03 2.87
5809 6037 8.270799 GTGAAATGAGTCATGTTTGAAAATGTG 58.729 33.333 6.34 0.00 32.48 3.21
5827 6055 7.581213 ACATTTTTCTACTGTGGTGAAATGA 57.419 32.000 25.17 12.33 31.08 2.57
5836 6064 4.759693 TGGGTGCTACATTTTTCTACTGTG 59.240 41.667 0.00 0.00 0.00 3.66
5917 6145 6.090783 TGAACATACTTACTAGAACAGCGTG 58.909 40.000 0.00 0.00 0.00 5.34
6164 6392 4.442753 GCCCTCTCACTGAAATCCTTAGAG 60.443 50.000 0.00 0.00 0.00 2.43
6168 6396 2.026449 CAGCCCTCTCACTGAAATCCTT 60.026 50.000 0.00 0.00 35.90 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.