Multiple sequence alignment - TraesCS5B01G365500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G365500 chr5B 100.000 6731 0 0 1 6731 544328992 544335722 0.000000e+00 12430
1 TraesCS5B01G365500 chr5B 93.939 99 4 2 647 743 650023919 650023821 1.510000e-31 148
2 TraesCS5B01G365500 chr5B 94.792 96 4 1 642 737 658145688 658145782 1.510000e-31 148
3 TraesCS5B01G365500 chr5B 93.421 76 4 1 1754 1828 553178897 553178972 1.980000e-20 111
4 TraesCS5B01G365500 chr5D 95.514 4481 154 18 2277 6731 446402257 446406716 0.000000e+00 7118
5 TraesCS5B01G365500 chr5D 90.588 595 31 11 1149 1742 446401262 446401832 0.000000e+00 765
6 TraesCS5B01G365500 chr5D 85.040 742 50 39 446 1156 446400522 446401233 0.000000e+00 699
7 TraesCS5B01G365500 chr5D 86.099 446 45 10 1811 2253 446401833 446402264 1.320000e-126 464
8 TraesCS5B01G365500 chr5D 96.629 89 2 1 647 734 522112056 522112144 5.440000e-31 147
9 TraesCS5B01G365500 chr5D 95.455 88 3 1 1 88 446400436 446400522 9.100000e-29 139
10 TraesCS5B01G365500 chr5A 95.246 4480 160 22 2277 6731 564076569 564081020 0.000000e+00 7044
11 TraesCS5B01G365500 chr5A 86.796 1136 86 35 646 1742 564075033 564076143 0.000000e+00 1208
12 TraesCS5B01G365500 chr5A 85.172 553 61 15 1 543 564074157 564074698 1.280000e-151 547
13 TraesCS5B01G365500 chr5A 85.618 445 50 7 1811 2253 564076144 564076576 7.960000e-124 455
14 TraesCS5B01G365500 chr5A 100.000 61 0 0 1754 1814 37840733 37840673 5.520000e-21 113
15 TraesCS5B01G365500 chr7D 94.000 100 2 2 648 747 535550405 535550310 1.510000e-31 148
16 TraesCS5B01G365500 chr7D 95.604 91 4 0 644 734 599463144 599463234 5.440000e-31 147
17 TraesCS5B01G365500 chr1D 96.629 89 2 1 647 734 342187344 342187432 5.440000e-31 147
18 TraesCS5B01G365500 chr7B 98.780 82 0 1 654 734 678291170 678291251 1.960000e-30 145
19 TraesCS5B01G365500 chr7B 91.250 80 5 2 1735 1814 698903265 698903342 2.570000e-19 108
20 TraesCS5B01G365500 chr1B 97.183 71 0 1 1754 1822 633575289 633575359 1.190000e-22 119
21 TraesCS5B01G365500 chr1B 93.506 77 3 1 1754 1828 453880996 453880920 5.520000e-21 113
22 TraesCS5B01G365500 chrUn 95.714 70 3 0 1754 1823 71055704 71055635 5.520000e-21 113
23 TraesCS5B01G365500 chr2B 95.775 71 1 2 1754 1824 615934067 615933999 5.520000e-21 113
24 TraesCS5B01G365500 chr2B 95.714 70 3 0 1754 1823 685271430 685271361 5.520000e-21 113
25 TraesCS5B01G365500 chr4B 93.421 76 2 3 1754 1827 128562779 128562705 7.140000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G365500 chr5B 544328992 544335722 6730 False 12430.0 12430 100.0000 1 6731 1 chr5B.!!$F1 6730
1 TraesCS5B01G365500 chr5D 446400436 446406716 6280 False 1837.0 7118 90.5392 1 6731 5 chr5D.!!$F2 6730
2 TraesCS5B01G365500 chr5A 564074157 564081020 6863 False 2313.5 7044 88.2080 1 6731 4 chr5A.!!$F1 6730

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 118 0.461961 GCTGTCGGCATTAGACTCCT 59.538 55.0 0.00 0.00 41.35 3.69 F
1116 1399 0.107410 ACGGTGAGCGAGAGAGAGAT 60.107 55.0 12.27 0.00 0.00 2.75 F
2240 2575 0.036952 CACGGCAACAGAGATGAGGT 60.037 55.0 0.00 0.00 0.00 3.85 F
2424 2759 0.517316 CAAGACGCTGTAAGGCAACC 59.483 55.0 0.00 0.00 37.17 3.77 F
2640 2975 0.519961 ATCGCCACGGTTAAAAGTGC 59.480 50.0 6.16 2.58 37.07 4.40 F
3236 3571 0.784778 CCTTTCGACAAGAGCACGTC 59.215 55.0 8.37 0.00 0.00 4.34 F
3815 4151 0.823460 GAGAGAGTCAAGAGGCCTGG 59.177 60.0 12.00 0.00 0.00 4.45 F
4390 4726 0.901827 TTGCTCGTAGAATGAGGGCA 59.098 50.0 0.00 0.00 34.09 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1437 1771 0.661020 ACGGTCAAGCCAGAAAAACG 59.339 50.0 0.00 0.00 36.97 3.60 R
3057 3392 0.458025 GTTGATCCCGACGTCACTCC 60.458 60.0 17.16 0.81 0.00 3.85 R
3346 3681 0.036388 TCGATTTCTCCAGCGGCTTT 60.036 50.0 0.00 0.00 0.00 3.51 R
3799 4135 0.178921 TGTCCAGGCCTCTTGACTCT 60.179 55.0 21.23 0.00 36.81 3.24 R
4508 4844 0.107993 CTCGAGCATGACCACACCAT 60.108 55.0 0.00 0.00 0.00 3.55 R
5203 5539 0.326927 ATGGGTAAACACACGGGGAG 59.673 55.0 0.00 0.00 28.47 4.30 R
5557 5915 0.162933 TTTTCTTGTCGCGACGATGC 59.837 50.0 31.88 10.78 38.42 3.91 R
5977 6335 0.685097 AGCCGAGCCAAGTCTTTGTA 59.315 50.0 0.00 0.00 32.21 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 1.203052 CCACCTGACAATGACATTGCC 59.797 52.381 24.85 16.59 43.98 4.52
88 89 3.437795 GACATTGCCGCAGCTGCT 61.438 61.111 34.22 15.66 40.80 4.24
94 98 4.261781 GCCGCAGCTGCTATTGCC 62.262 66.667 34.22 13.16 39.32 4.52
100 104 2.711924 GCTGCTATTGCCGCTGTC 59.288 61.111 8.19 0.00 44.32 3.51
101 105 3.009140 CTGCTATTGCCGCTGTCG 58.991 61.111 0.00 0.00 38.71 4.35
113 117 0.872021 CGCTGTCGGCATTAGACTCC 60.872 60.000 4.16 0.00 41.91 3.85
114 118 0.461961 GCTGTCGGCATTAGACTCCT 59.538 55.000 0.00 0.00 41.35 3.69
115 119 1.804372 GCTGTCGGCATTAGACTCCTG 60.804 57.143 0.00 0.00 41.35 3.86
143 147 2.744243 GGATCCTGCAGAGCTGGCT 61.744 63.158 17.39 0.00 45.32 4.75
151 155 2.071262 CAGAGCTGGCTCCAGGGAT 61.071 63.158 17.60 0.00 43.70 3.85
169 173 1.468914 GATGGAAGCCGTTGAGTTTCC 59.531 52.381 0.70 0.70 39.59 3.13
176 180 2.370849 AGCCGTTGAGTTTCCTTCCTTA 59.629 45.455 0.00 0.00 0.00 2.69
245 249 7.680739 AGAGAATAGAAAGGGAAGGAGTAAAGT 59.319 37.037 0.00 0.00 0.00 2.66
254 258 5.012768 AGGGAAGGAGTAAAGTTGATTTCGA 59.987 40.000 0.00 0.00 32.01 3.71
267 272 5.180117 AGTTGATTTCGAGTTCTGGATGTTG 59.820 40.000 0.00 0.00 0.00 3.33
272 277 3.130633 TCGAGTTCTGGATGTTGTTGTG 58.869 45.455 0.00 0.00 0.00 3.33
280 285 5.380900 TCTGGATGTTGTTGTGGAATTACA 58.619 37.500 0.00 0.00 0.00 2.41
305 315 7.859613 CTGGTTTCAGTAGATGATATGTACG 57.140 40.000 0.00 0.00 37.89 3.67
321 331 9.981114 TGATATGTACGATGATATTGTGACTTT 57.019 29.630 0.00 0.00 0.00 2.66
331 341 3.502123 ATTGTGACTTTTTCGAGGGGA 57.498 42.857 0.00 0.00 0.00 4.81
333 343 3.284793 TGTGACTTTTTCGAGGGGAAA 57.715 42.857 0.00 0.00 42.75 3.13
347 357 4.448210 GAGGGGAAAATACAACGCTGATA 58.552 43.478 0.00 0.00 0.00 2.15
350 360 5.531287 AGGGGAAAATACAACGCTGATAATC 59.469 40.000 0.00 0.00 0.00 1.75
353 363 6.260050 GGGAAAATACAACGCTGATAATCTGA 59.740 38.462 0.00 0.00 0.00 3.27
357 367 9.507280 AAAATACAACGCTGATAATCTGAAATG 57.493 29.630 0.00 0.00 0.00 2.32
366 376 7.029563 GCTGATAATCTGAAATGTCCGTTTTT 58.970 34.615 0.00 0.00 0.00 1.94
367 377 7.008628 GCTGATAATCTGAAATGTCCGTTTTTG 59.991 37.037 0.00 0.00 0.00 2.44
369 379 4.582701 ATCTGAAATGTCCGTTTTTGCA 57.417 36.364 0.00 0.00 0.00 4.08
370 380 3.701241 TCTGAAATGTCCGTTTTTGCAC 58.299 40.909 0.00 0.00 0.00 4.57
371 381 2.455032 TGAAATGTCCGTTTTTGCACG 58.545 42.857 0.00 0.00 40.02 5.34
372 382 1.189227 GAAATGTCCGTTTTTGCACGC 59.811 47.619 0.00 0.00 38.93 5.34
373 383 0.932585 AATGTCCGTTTTTGCACGCG 60.933 50.000 3.53 3.53 38.93 6.01
374 384 2.724358 GTCCGTTTTTGCACGCGG 60.724 61.111 12.47 10.12 44.95 6.46
375 385 3.203412 TCCGTTTTTGCACGCGGT 61.203 55.556 12.47 0.00 44.07 5.68
385 395 2.945984 CACGCGGTCTGCATTTGT 59.054 55.556 12.47 0.00 46.97 2.83
432 442 6.983307 TGCTTCATCTAGCAGAGAAATTAGTC 59.017 38.462 0.00 0.00 45.72 2.59
454 465 5.125097 GTCTCTGCATTTTGTCCATCAATCT 59.875 40.000 0.00 0.00 35.84 2.40
455 466 5.124936 TCTCTGCATTTTGTCCATCAATCTG 59.875 40.000 0.00 0.00 35.84 2.90
458 469 3.615496 GCATTTTGTCCATCAATCTGTGC 59.385 43.478 0.00 0.00 35.84 4.57
479 490 8.114331 TGTGCATTCCTCCATTATCATAATTC 57.886 34.615 0.00 0.00 0.00 2.17
490 501 7.389884 TCCATTATCATAATTCTTGCTCTCAGC 59.610 37.037 0.00 0.00 42.82 4.26
531 542 1.342374 TGCTCTCTGACTCCTGCCATA 60.342 52.381 0.00 0.00 0.00 2.74
546 557 4.141756 CCTGCCATATGATGTATCTCTCCC 60.142 50.000 3.65 0.00 0.00 4.30
646 881 7.615403 AGAGAATGTTGCATTTCTACAGTAGA 58.385 34.615 6.15 6.15 34.15 2.59
738 991 2.169352 ACCTAGACTACGACGGAGCTTA 59.831 50.000 7.09 0.00 0.00 3.09
744 997 3.966154 ACTACGACGGAGCTTATTGATG 58.034 45.455 7.09 0.00 0.00 3.07
745 998 2.225068 ACGACGGAGCTTATTGATGG 57.775 50.000 0.00 0.00 0.00 3.51
753 1006 5.070446 ACGGAGCTTATTGATGGTAATCTGA 59.930 40.000 0.00 0.00 33.61 3.27
755 1008 6.517362 CGGAGCTTATTGATGGTAATCTGAGA 60.517 42.308 0.00 0.00 33.61 3.27
762 1015 9.716531 TTATTGATGGTAATCTGAGATAGCTTG 57.283 33.333 0.00 0.00 33.61 4.01
764 1017 6.753180 TGATGGTAATCTGAGATAGCTTGTC 58.247 40.000 0.00 0.00 33.61 3.18
779 1032 3.197766 AGCTTGTCTATCGATTGGACCAA 59.802 43.478 20.70 9.92 0.00 3.67
821 1082 2.029380 GGAAATGGGACCTTCAAAACGG 60.029 50.000 0.00 0.00 0.00 4.44
903 1167 3.104512 CCCTCCCAATTTTAGAAACCCC 58.895 50.000 0.00 0.00 0.00 4.95
918 1182 2.442643 CCCCATCCACATGCCCAC 60.443 66.667 0.00 0.00 0.00 4.61
919 1183 2.359797 CCCATCCACATGCCCACA 59.640 61.111 0.00 0.00 0.00 4.17
931 1214 4.135153 CCCACACGCGAGAGGAGG 62.135 72.222 20.45 10.92 0.00 4.30
956 1239 4.765970 TCCTCCTGCATGCCCCCT 62.766 66.667 16.68 0.00 0.00 4.79
983 1266 4.148825 CCCTCCCTCGCTTGGTCG 62.149 72.222 0.00 0.00 0.00 4.79
984 1267 3.382832 CCTCCCTCGCTTGGTCGT 61.383 66.667 0.00 0.00 0.00 4.34
985 1268 2.182030 CTCCCTCGCTTGGTCGTC 59.818 66.667 0.00 0.00 0.00 4.20
1114 1397 1.719117 GACGGTGAGCGAGAGAGAG 59.281 63.158 12.27 0.00 0.00 3.20
1115 1398 0.741574 GACGGTGAGCGAGAGAGAGA 60.742 60.000 12.27 0.00 0.00 3.10
1116 1399 0.107410 ACGGTGAGCGAGAGAGAGAT 60.107 55.000 12.27 0.00 0.00 2.75
1117 1400 0.586319 CGGTGAGCGAGAGAGAGATC 59.414 60.000 0.00 0.00 0.00 2.75
1118 1401 0.586319 GGTGAGCGAGAGAGAGATCG 59.414 60.000 0.00 0.00 41.79 3.69
1119 1402 0.586319 GTGAGCGAGAGAGAGATCGG 59.414 60.000 0.00 0.00 39.31 4.18
1122 1405 1.228003 GCGAGAGAGAGATCGGGGA 60.228 63.158 0.00 0.00 39.31 4.81
1124 1407 1.904287 CGAGAGAGAGATCGGGGAAT 58.096 55.000 0.00 0.00 35.33 3.01
1127 1410 3.305064 CGAGAGAGAGATCGGGGAATTTC 60.305 52.174 0.00 0.00 35.33 2.17
1143 1426 1.063654 TTTCCCCTCCCGTTTCCTGT 61.064 55.000 0.00 0.00 0.00 4.00
1167 1486 6.021468 GTCTTCAGAACATTTTGTGACGTTTG 60.021 38.462 0.00 0.00 34.85 2.93
1250 1569 1.228245 GCTGGACAACTGGAAGGCA 60.228 57.895 0.00 0.00 39.30 4.75
1349 1668 3.666253 CCGCCAAACAACGGGGAC 61.666 66.667 0.00 0.00 45.74 4.46
1361 1680 2.516909 GGGGACCGAACCACCAAA 59.483 61.111 0.00 0.00 40.86 3.28
1362 1681 1.900016 GGGGACCGAACCACCAAAC 60.900 63.158 0.00 0.00 40.86 2.93
1363 1682 1.900016 GGGACCGAACCACCAAACC 60.900 63.158 0.00 0.00 0.00 3.27
1392 1711 3.988379 TGCTCAAGACCATTGTGAAAC 57.012 42.857 0.00 0.00 37.35 2.78
1453 1787 2.033424 AGCTTCGTTTTTCTGGCTTGAC 59.967 45.455 0.00 0.00 0.00 3.18
1456 1790 0.661020 CGTTTTTCTGGCTTGACCGT 59.339 50.000 0.00 0.00 43.94 4.83
1477 1811 4.215349 GCATGGAGCAGTGACCTC 57.785 61.111 0.00 0.00 44.79 3.85
1568 1902 1.603455 ATGCCCAACTGTGAACCCG 60.603 57.895 0.00 0.00 0.00 5.28
1571 1905 1.792118 GCCCAACTGTGAACCCGAAC 61.792 60.000 0.00 0.00 0.00 3.95
1574 1908 1.226746 CAACTGTGAACCCGAACCTC 58.773 55.000 0.00 0.00 0.00 3.85
1584 1918 2.416432 CCGAACCTCCTCTCCGGTC 61.416 68.421 0.00 0.00 35.83 4.79
1690 2025 4.344474 GCGGCGAGATCCCCTACG 62.344 72.222 12.98 0.00 0.00 3.51
1718 2053 1.174712 CCCAACCTGGTTCAGCTGTG 61.175 60.000 14.67 1.38 35.17 3.66
1727 2062 3.141398 TGGTTCAGCTGTGAGTTCATTC 58.859 45.455 14.67 0.00 32.98 2.67
1760 2095 1.028905 TTTTTGCCTTCCAGTGGTCG 58.971 50.000 9.54 1.13 0.00 4.79
1761 2096 0.821711 TTTTGCCTTCCAGTGGTCGG 60.822 55.000 9.54 11.75 0.00 4.79
1762 2097 1.701031 TTTGCCTTCCAGTGGTCGGA 61.701 55.000 19.42 3.84 0.00 4.55
1763 2098 2.047179 GCCTTCCAGTGGTCGGAC 60.047 66.667 19.42 0.00 30.29 4.79
1764 2099 2.663196 CCTTCCAGTGGTCGGACC 59.337 66.667 20.36 20.36 39.22 4.46
1765 2100 2.663196 CTTCCAGTGGTCGGACCC 59.337 66.667 23.81 14.91 37.50 4.46
1766 2101 1.913762 CTTCCAGTGGTCGGACCCT 60.914 63.158 23.81 16.82 37.50 4.34
1767 2102 1.460689 TTCCAGTGGTCGGACCCTT 60.461 57.895 23.81 9.54 37.50 3.95
1768 2103 1.477685 TTCCAGTGGTCGGACCCTTC 61.478 60.000 23.81 13.97 37.50 3.46
1769 2104 2.663196 CAGTGGTCGGACCCTTCC 59.337 66.667 23.81 9.51 37.50 3.46
1770 2105 2.606826 AGTGGTCGGACCCTTCCC 60.607 66.667 23.81 7.17 38.99 3.97
1771 2106 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
1772 2107 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
1773 2108 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
1774 2109 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
1775 2110 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
1776 2111 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
1777 2112 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
1778 2113 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
1779 2114 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
1780 2115 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
1781 2116 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
1782 2117 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
1807 2142 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
1808 2143 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
1809 2144 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
1818 2153 1.077265 ACCAGGTTGCCCTTCCATG 59.923 57.895 0.00 0.00 39.89 3.66
1829 2164 0.037975 CCTTCCATGGTTGCTGTTGC 60.038 55.000 12.58 0.00 40.20 4.17
1859 2194 2.238898 ACCCCATTAGTTAGACCAGTGC 59.761 50.000 0.00 0.00 0.00 4.40
1867 2202 6.956299 TTAGTTAGACCAGTGCGTTTTATC 57.044 37.500 0.00 0.00 0.00 1.75
1880 2215 7.164662 CAGTGCGTTTTATCATATGTTGTGATG 59.835 37.037 1.90 0.00 36.96 3.07
1920 2255 1.222661 GTTTACCGGCGGGATTCCT 59.777 57.895 31.78 10.61 36.97 3.36
1922 2257 0.393267 TTTACCGGCGGGATTCCTTG 60.393 55.000 31.78 1.05 36.97 3.61
1923 2258 2.260088 TTACCGGCGGGATTCCTTGG 62.260 60.000 31.78 0.20 36.97 3.61
2036 2371 2.817258 TGATTGAATCGGTCACCAAACC 59.183 45.455 0.00 0.00 35.39 3.27
2093 2428 1.265905 CACTTAAACGGGCAGTTGACC 59.734 52.381 3.21 0.00 43.37 4.02
2103 2438 1.512926 GCAGTTGACCGACATGTTCT 58.487 50.000 0.00 0.00 0.00 3.01
2125 2460 1.873591 GCAACTTCCAAAGCTCTCGAA 59.126 47.619 0.00 0.00 0.00 3.71
2137 2472 7.442969 TCCAAAGCTCTCGAAAATGTAAGTTAA 59.557 33.333 0.00 0.00 0.00 2.01
2141 2476 6.426937 AGCTCTCGAAAATGTAAGTTAAGCAA 59.573 34.615 0.00 0.00 0.00 3.91
2143 2478 7.589954 GCTCTCGAAAATGTAAGTTAAGCAAAA 59.410 33.333 0.00 0.00 0.00 2.44
2144 2479 9.612620 CTCTCGAAAATGTAAGTTAAGCAAAAT 57.387 29.630 0.00 0.00 0.00 1.82
2145 2480 9.607285 TCTCGAAAATGTAAGTTAAGCAAAATC 57.393 29.630 0.00 0.00 0.00 2.17
2147 2482 9.393249 TCGAAAATGTAAGTTAAGCAAAATCAG 57.607 29.630 0.00 0.00 0.00 2.90
2148 2483 9.393249 CGAAAATGTAAGTTAAGCAAAATCAGA 57.607 29.630 0.00 0.00 0.00 3.27
2153 2488 9.846248 ATGTAAGTTAAGCAAAATCAGATTCAC 57.154 29.630 0.00 0.00 0.00 3.18
2154 2489 8.845227 TGTAAGTTAAGCAAAATCAGATTCACA 58.155 29.630 0.00 0.00 0.00 3.58
2157 2492 7.588512 AGTTAAGCAAAATCAGATTCACAGTC 58.411 34.615 0.00 0.00 0.00 3.51
2166 2501 4.507710 TCAGATTCACAGTCCATTGTAGC 58.492 43.478 0.00 0.00 0.00 3.58
2167 2502 4.223700 TCAGATTCACAGTCCATTGTAGCT 59.776 41.667 0.00 0.00 0.00 3.32
2168 2503 5.422012 TCAGATTCACAGTCCATTGTAGCTA 59.578 40.000 0.00 0.00 0.00 3.32
2169 2504 5.752472 CAGATTCACAGTCCATTGTAGCTAG 59.248 44.000 0.00 0.00 0.00 3.42
2170 2505 3.526931 TCACAGTCCATTGTAGCTAGC 57.473 47.619 6.62 6.62 0.00 3.42
2172 2507 3.452264 TCACAGTCCATTGTAGCTAGCAT 59.548 43.478 18.83 4.67 0.00 3.79
2178 2513 4.987912 GTCCATTGTAGCTAGCATCTCTTC 59.012 45.833 18.83 0.00 0.00 2.87
2180 2515 4.749099 CCATTGTAGCTAGCATCTCTTCAC 59.251 45.833 18.83 2.11 0.00 3.18
2193 2528 6.072286 AGCATCTCTTCACAAATTTACCACAG 60.072 38.462 0.00 0.00 0.00 3.66
2197 2532 8.062065 TCTCTTCACAAATTTACCACAGTTTT 57.938 30.769 0.00 0.00 0.00 2.43
2198 2533 8.527810 TCTCTTCACAAATTTACCACAGTTTTT 58.472 29.630 0.00 0.00 0.00 1.94
2199 2534 9.796120 CTCTTCACAAATTTACCACAGTTTTTA 57.204 29.630 0.00 0.00 0.00 1.52
2226 2561 7.941795 ACTAGTTTGTATATAATGTCACGGC 57.058 36.000 0.00 0.00 0.00 5.68
2236 2571 1.730501 ATGTCACGGCAACAGAGATG 58.269 50.000 0.00 0.00 0.00 2.90
2237 2572 0.678950 TGTCACGGCAACAGAGATGA 59.321 50.000 0.00 0.00 0.00 2.92
2238 2573 1.337167 TGTCACGGCAACAGAGATGAG 60.337 52.381 0.00 0.00 0.00 2.90
2240 2575 0.036952 CACGGCAACAGAGATGAGGT 60.037 55.000 0.00 0.00 0.00 3.85
2241 2576 0.687354 ACGGCAACAGAGATGAGGTT 59.313 50.000 0.00 0.00 0.00 3.50
2242 2577 1.081892 CGGCAACAGAGATGAGGTTG 58.918 55.000 0.00 0.00 43.53 3.77
2243 2578 1.609061 CGGCAACAGAGATGAGGTTGT 60.609 52.381 0.00 0.00 42.84 3.32
2244 2579 1.808945 GGCAACAGAGATGAGGTTGTG 59.191 52.381 0.00 0.00 42.84 3.33
2245 2580 2.550855 GGCAACAGAGATGAGGTTGTGA 60.551 50.000 0.00 0.00 42.84 3.58
2246 2581 3.341823 GCAACAGAGATGAGGTTGTGAT 58.658 45.455 0.00 0.00 42.84 3.06
2247 2582 3.126514 GCAACAGAGATGAGGTTGTGATG 59.873 47.826 0.00 0.00 42.84 3.07
2248 2583 2.983229 ACAGAGATGAGGTTGTGATGC 58.017 47.619 0.00 0.00 0.00 3.91
2249 2584 2.570752 ACAGAGATGAGGTTGTGATGCT 59.429 45.455 0.00 0.00 0.00 3.79
2250 2585 3.008813 ACAGAGATGAGGTTGTGATGCTT 59.991 43.478 0.00 0.00 0.00 3.91
2251 2586 3.374367 CAGAGATGAGGTTGTGATGCTTG 59.626 47.826 0.00 0.00 0.00 4.01
2252 2587 3.262660 AGAGATGAGGTTGTGATGCTTGA 59.737 43.478 0.00 0.00 0.00 3.02
2253 2588 3.341823 AGATGAGGTTGTGATGCTTGAC 58.658 45.455 0.00 0.00 0.00 3.18
2254 2589 2.936919 TGAGGTTGTGATGCTTGACT 57.063 45.000 0.00 0.00 0.00 3.41
2255 2590 3.213206 TGAGGTTGTGATGCTTGACTT 57.787 42.857 0.00 0.00 0.00 3.01
2256 2591 3.141398 TGAGGTTGTGATGCTTGACTTC 58.859 45.455 0.00 0.00 0.00 3.01
2257 2592 3.181451 TGAGGTTGTGATGCTTGACTTCT 60.181 43.478 0.00 0.00 0.00 2.85
2258 2593 3.817647 GAGGTTGTGATGCTTGACTTCTT 59.182 43.478 0.00 0.00 0.00 2.52
2259 2594 4.210331 AGGTTGTGATGCTTGACTTCTTT 58.790 39.130 0.00 0.00 0.00 2.52
2260 2595 4.646492 AGGTTGTGATGCTTGACTTCTTTT 59.354 37.500 0.00 0.00 0.00 2.27
2261 2596 5.127682 AGGTTGTGATGCTTGACTTCTTTTT 59.872 36.000 0.00 0.00 0.00 1.94
2262 2597 5.460091 GGTTGTGATGCTTGACTTCTTTTTC 59.540 40.000 0.00 0.00 0.00 2.29
2263 2598 5.186996 TGTGATGCTTGACTTCTTTTTCC 57.813 39.130 0.00 0.00 0.00 3.13
2264 2599 4.222114 GTGATGCTTGACTTCTTTTTCCG 58.778 43.478 0.00 0.00 0.00 4.30
2265 2600 3.253188 TGATGCTTGACTTCTTTTTCCGG 59.747 43.478 0.00 0.00 0.00 5.14
2266 2601 2.650322 TGCTTGACTTCTTTTTCCGGT 58.350 42.857 0.00 0.00 0.00 5.28
2267 2602 2.616842 TGCTTGACTTCTTTTTCCGGTC 59.383 45.455 0.00 0.00 0.00 4.79
2268 2603 2.616842 GCTTGACTTCTTTTTCCGGTCA 59.383 45.455 0.00 0.00 35.51 4.02
2269 2604 3.066203 GCTTGACTTCTTTTTCCGGTCAA 59.934 43.478 0.00 0.00 42.23 3.18
2270 2605 4.439563 GCTTGACTTCTTTTTCCGGTCAAA 60.440 41.667 0.00 0.00 43.27 2.69
2271 2606 5.736207 GCTTGACTTCTTTTTCCGGTCAAAT 60.736 40.000 0.00 0.00 43.27 2.32
2272 2607 5.181690 TGACTTCTTTTTCCGGTCAAATG 57.818 39.130 0.00 5.00 34.58 2.32
2273 2608 3.977427 ACTTCTTTTTCCGGTCAAATGC 58.023 40.909 0.00 0.00 0.00 3.56
2274 2609 3.383185 ACTTCTTTTTCCGGTCAAATGCA 59.617 39.130 0.00 0.00 0.00 3.96
2275 2610 4.039124 ACTTCTTTTTCCGGTCAAATGCAT 59.961 37.500 0.00 0.00 0.00 3.96
2288 2623 5.277154 GGTCAAATGCATATGCTTGATTTGC 60.277 40.000 29.49 25.30 39.62 3.68
2289 2624 5.522460 GTCAAATGCATATGCTTGATTTGCT 59.478 36.000 29.49 10.10 39.62 3.91
2291 2626 3.343380 TGCATATGCTTGATTTGCTCG 57.657 42.857 27.13 0.00 39.18 5.03
2297 2632 0.807496 GCTTGATTTGCTCGGAGCTT 59.193 50.000 28.42 14.68 42.97 3.74
2312 2647 7.128976 GCTCGGAGCTTATTAATTTTCTTCTG 58.871 38.462 22.32 0.00 38.45 3.02
2314 2649 8.964476 TCGGAGCTTATTAATTTTCTTCTGAT 57.036 30.769 0.00 0.00 0.00 2.90
2361 2696 0.820871 GGATCTCTCTGACAACCGCT 59.179 55.000 0.00 0.00 0.00 5.52
2363 2698 2.266554 GATCTCTCTGACAACCGCTTG 58.733 52.381 0.00 0.00 0.00 4.01
2411 2746 1.079543 CCTCACAGGCCTCAAGACG 60.080 63.158 0.00 0.00 0.00 4.18
2424 2759 0.517316 CAAGACGCTGTAAGGCAACC 59.483 55.000 0.00 0.00 37.17 3.77
2461 2796 3.347216 TCACTGGCTATTTCTCCTTTGC 58.653 45.455 0.00 0.00 0.00 3.68
2492 2827 9.603921 ACAAATGACTGTCAATCTTTTCAAAAT 57.396 25.926 15.31 0.00 0.00 1.82
2608 2943 0.999406 CCGAGTAAACACTGCCATCG 59.001 55.000 0.00 0.00 0.00 3.84
2628 2963 2.344142 CGCAAACCAATTTTATCGCCAC 59.656 45.455 0.00 0.00 0.00 5.01
2640 2975 0.519961 ATCGCCACGGTTAAAAGTGC 59.480 50.000 6.16 2.58 37.07 4.40
2665 3000 6.569179 TGCTTCTGGTTAATTACTTCAACC 57.431 37.500 0.82 0.82 41.75 3.77
2896 3231 3.904136 AAAAATCGACAGCCTCAAGTG 57.096 42.857 0.00 0.00 0.00 3.16
2932 3267 2.137523 CAACATTGCTCCTTTTGCACC 58.862 47.619 0.00 0.00 40.40 5.01
3057 3392 1.299773 GAGCCTCATCGAGCGAAGG 60.300 63.158 6.31 6.31 0.00 3.46
3236 3571 0.784778 CCTTTCGACAAGAGCACGTC 59.215 55.000 8.37 0.00 0.00 4.34
3255 3590 1.977854 TCTACTGATGCAACCACCAGT 59.022 47.619 0.00 2.41 41.98 4.00
3256 3591 3.056107 GTCTACTGATGCAACCACCAGTA 60.056 47.826 0.00 3.51 40.07 2.74
3257 3592 2.479566 ACTGATGCAACCACCAGTAG 57.520 50.000 0.00 0.00 38.02 2.57
3264 3599 2.036733 TGCAACCACCAGTAGTAGTGTC 59.963 50.000 4.31 0.00 31.88 3.67
3276 3611 3.944055 AGTAGTGTCTGCAGGTACTTG 57.056 47.619 22.73 0.00 34.60 3.16
3290 3625 5.508994 GCAGGTACTTGTACATTTTGGCTTT 60.509 40.000 6.86 0.00 34.60 3.51
3294 3629 2.829741 TGTACATTTTGGCTTTGGGC 57.170 45.000 0.00 0.00 40.90 5.36
3302 3637 3.784429 TGGCTTTGGGCAATAAGGT 57.216 47.368 0.00 0.00 45.10 3.50
3315 3650 4.379499 GGCAATAAGGTTTCTTGTCTTCCG 60.379 45.833 0.00 0.00 34.59 4.30
3346 3681 5.065914 GGCCATTCTTCAATAGTCAGCATA 58.934 41.667 0.00 0.00 0.00 3.14
3385 3720 2.313234 ACGTCGATTGACAGTGTAACG 58.687 47.619 13.58 2.76 45.80 3.18
3426 3761 4.233123 AGACGATGAACGACAACAAGTA 57.767 40.909 0.00 0.00 45.77 2.24
3433 3768 6.691388 CGATGAACGACAACAAGTATCAGATA 59.309 38.462 0.00 0.00 45.77 1.98
3487 3822 0.965866 TCAGCCTGGTGACCTACTCG 60.966 60.000 2.11 0.00 0.00 4.18
3493 3828 1.293963 TGGTGACCTACTCGTCGTCG 61.294 60.000 2.11 0.00 35.40 5.12
3593 3928 2.614829 ATATGCCAACGGACAGGTAC 57.385 50.000 0.00 0.00 0.00 3.34
3729 4065 4.431809 TGCATATAAAACATGTTGCAGCC 58.568 39.130 12.82 0.00 35.36 4.85
3775 4111 4.503741 TGGCAGTTTATTTCTGTCAAGC 57.496 40.909 0.00 0.00 43.16 4.01
3792 4128 0.890683 AGCGGCCTGAAGAAAAATGG 59.109 50.000 0.00 0.00 0.00 3.16
3799 4135 3.573967 GCCTGAAGAAAAATGGTTGGAGA 59.426 43.478 0.00 0.00 0.00 3.71
3800 4136 4.321527 GCCTGAAGAAAAATGGTTGGAGAG 60.322 45.833 0.00 0.00 0.00 3.20
3815 4151 0.823460 GAGAGAGTCAAGAGGCCTGG 59.177 60.000 12.00 0.00 0.00 4.45
4046 4382 1.344087 ACCATATGAACGGGTCCCTCT 60.344 52.381 6.29 0.00 0.00 3.69
4049 4385 3.195825 CCATATGAACGGGTCCCTCTATC 59.804 52.174 6.29 0.00 0.00 2.08
4057 4393 2.321719 GGGTCCCTCTATCAGTTCCTC 58.678 57.143 0.00 0.00 0.00 3.71
4166 4502 3.250762 TGACAAGCAACACTGAAGCATAC 59.749 43.478 0.00 0.00 0.00 2.39
4168 4504 3.499918 ACAAGCAACACTGAAGCATACTC 59.500 43.478 0.00 0.00 0.00 2.59
4368 4704 2.668279 GCGCCATGAGACAACGATTTTT 60.668 45.455 0.00 0.00 0.00 1.94
4369 4705 2.910482 CGCCATGAGACAACGATTTTTG 59.090 45.455 0.00 0.00 0.00 2.44
4390 4726 0.901827 TTGCTCGTAGAATGAGGGCA 59.098 50.000 0.00 0.00 34.09 5.36
4391 4727 0.901827 TGCTCGTAGAATGAGGGCAA 59.098 50.000 0.00 0.00 34.09 4.52
4508 4844 1.129998 GAAGAGCGACGTGTACAGCTA 59.870 52.381 7.27 0.00 40.39 3.32
4644 4980 2.543067 ATCCCCAGCTCAAAGCCGAC 62.543 60.000 0.00 0.00 43.77 4.79
4814 5150 2.026449 CAGCCCTCTCACTGAAATCCTT 60.026 50.000 0.00 0.00 35.90 3.36
4818 5154 4.442753 GCCCTCTCACTGAAATCCTTAGAG 60.443 50.000 0.00 0.00 0.00 2.43
5065 5401 6.090783 TGAACATACTTACTAGAACAGCGTG 58.909 40.000 0.00 0.00 0.00 5.34
5146 5482 4.759693 TGGGTGCTACATTTTTCTACTGTG 59.240 41.667 0.00 0.00 0.00 3.66
5155 5491 7.581213 ACATTTTTCTACTGTGGTGAAATGA 57.419 32.000 25.17 12.33 31.08 2.57
5173 5509 8.270799 GTGAAATGAGTCATGTTTGAAAATGTG 58.729 33.333 6.34 0.00 32.48 3.21
5203 5539 2.829741 AACTGCACTGAGTCCTTCTC 57.170 50.000 0.00 0.00 43.03 2.87
5283 5632 8.443937 CACTGAAAAGAAAGCATAAGTAGGTAC 58.556 37.037 0.00 0.00 0.00 3.34
5313 5662 5.353400 TCAAAGATCATCAGCACTGACATTC 59.647 40.000 1.71 0.56 43.11 2.67
5322 5671 3.939592 CAGCACTGACATTCTGATCACAT 59.060 43.478 0.00 0.00 0.00 3.21
5327 5676 6.073711 GCACTGACATTCTGATCACATCATAG 60.074 42.308 0.00 0.00 38.85 2.23
5348 5697 1.702886 ACTCACAAGCTCGTTGATCG 58.297 50.000 0.00 0.00 38.60 3.69
5463 5821 5.687730 CGAGAAAAGAAAAGGAAAAAGGCTC 59.312 40.000 0.00 0.00 0.00 4.70
5473 5831 3.132824 AGGAAAAAGGCTCAAACAACCAG 59.867 43.478 0.00 0.00 0.00 4.00
5557 5915 2.942710 CGGTAATCGTGCCCTAGTATG 58.057 52.381 0.00 0.00 0.00 2.39
5609 5967 1.072331 ACTAGAACACCACTGCAAGGG 59.928 52.381 9.46 5.84 39.30 3.95
5639 5997 0.396435 TGCCTCAACACACACTAGGG 59.604 55.000 0.00 0.00 0.00 3.53
5640 5998 0.396811 GCCTCAACACACACTAGGGT 59.603 55.000 0.00 0.00 0.00 4.34
5641 5999 1.608283 GCCTCAACACACACTAGGGTC 60.608 57.143 0.00 0.00 0.00 4.46
5677 6035 4.177026 CAAGGGAGAAGTACTTCACATCG 58.823 47.826 31.80 12.24 41.84 3.84
5764 6122 2.715749 TGGGTGCATCCATCAGTAAG 57.284 50.000 16.81 0.00 38.11 2.34
5778 6136 5.182001 CCATCAGTAAGACAGGAAACCAAAG 59.818 44.000 0.00 0.00 0.00 2.77
5802 6160 0.751643 GTGGCACAAACTGGTGGAGT 60.752 55.000 13.86 0.00 44.16 3.85
5803 6161 0.751277 TGGCACAAACTGGTGGAGTG 60.751 55.000 0.00 0.00 39.19 3.51
5804 6162 1.455383 GGCACAAACTGGTGGAGTGG 61.455 60.000 0.00 0.00 39.19 4.00
5805 6163 0.465460 GCACAAACTGGTGGAGTGGA 60.465 55.000 0.00 0.00 39.19 4.02
5807 6165 2.586425 CACAAACTGGTGGAGTGGATT 58.414 47.619 0.00 0.00 34.02 3.01
5808 6166 3.750371 CACAAACTGGTGGAGTGGATTA 58.250 45.455 0.00 0.00 34.02 1.75
5827 6185 5.305644 GGATTACTAGTCACTGTCCATGGAT 59.694 44.000 19.62 1.85 0.00 3.41
5977 6335 2.780094 CCTCTGTGCTCTCGCGGAT 61.780 63.158 6.13 0.00 37.46 4.18
6144 6502 0.918983 TGAATCCAAGGTAGGGCCAG 59.081 55.000 6.18 0.00 40.61 4.85
6172 6530 3.782889 AACTTTGTGTCAAGGAACTGC 57.217 42.857 0.00 0.00 40.86 4.40
6208 6566 5.108027 CCTTAAAAGTTCATTTGCCGTTTCG 60.108 40.000 0.00 0.00 0.00 3.46
6384 6742 0.543277 TCAGGCTGATCACATGGACC 59.457 55.000 14.43 0.00 0.00 4.46
6402 6763 2.052104 CCAATGGAACCGGGAAGGC 61.052 63.158 6.32 0.00 46.52 4.35
6421 6782 2.124570 CCCTTGACCCCAGATGCG 60.125 66.667 0.00 0.00 0.00 4.73
6426 6787 4.148825 GACCCCAGATGCGCGACT 62.149 66.667 12.10 2.05 0.00 4.18
6511 6872 0.813821 GAGCATGGGCCTTCAGAAAC 59.186 55.000 4.53 0.00 42.56 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 0.677731 ATGTCATTGTCAGGTGGCCG 60.678 55.000 0.00 0.00 0.00 6.13
59 60 1.203052 GGCAATGTCATTGTCAGGTGG 59.797 52.381 22.42 0.00 44.04 4.61
100 104 3.570125 TGTATCTCAGGAGTCTAATGCCG 59.430 47.826 0.00 0.00 0.00 5.69
101 105 4.342378 TGTGTATCTCAGGAGTCTAATGCC 59.658 45.833 0.00 0.00 0.00 4.40
113 117 2.697229 TGCAGGATCCTGTGTATCTCAG 59.303 50.000 36.32 13.03 45.24 3.35
114 118 2.697229 CTGCAGGATCCTGTGTATCTCA 59.303 50.000 36.32 24.26 45.24 3.27
115 119 2.961741 TCTGCAGGATCCTGTGTATCTC 59.038 50.000 36.32 21.39 45.24 2.75
127 131 2.744243 GGAGCCAGCTCTGCAGGAT 61.744 63.158 18.54 0.00 42.38 3.24
129 133 3.683966 CTGGAGCCAGCTCTGCAGG 62.684 68.421 18.54 5.82 45.24 4.85
132 136 4.486503 CCCTGGAGCCAGCTCTGC 62.487 72.222 18.54 4.46 42.35 4.26
151 155 0.472471 AGGAAACTCAACGGCTTCCA 59.528 50.000 2.78 0.00 39.91 3.53
162 166 5.949952 TGGCCTAAAATAAGGAAGGAAACTC 59.050 40.000 3.32 0.00 39.15 3.01
169 173 7.041721 GGAAACAATGGCCTAAAATAAGGAAG 58.958 38.462 3.32 0.00 39.15 3.46
176 180 4.467438 CAGAGGGAAACAATGGCCTAAAAT 59.533 41.667 3.32 0.00 0.00 1.82
218 222 7.663043 TTACTCCTTCCCTTTCTATTCTCTC 57.337 40.000 0.00 0.00 0.00 3.20
225 229 7.569599 ATCAACTTTACTCCTTCCCTTTCTA 57.430 36.000 0.00 0.00 0.00 2.10
245 249 5.063204 ACAACATCCAGAACTCGAAATCAA 58.937 37.500 0.00 0.00 0.00 2.57
254 258 3.576078 TCCACAACAACATCCAGAACT 57.424 42.857 0.00 0.00 0.00 3.01
267 272 5.067283 ACTGAAACCAGTGTAATTCCACAAC 59.933 40.000 3.83 0.00 42.84 3.32
272 277 7.103641 TCATCTACTGAAACCAGTGTAATTCC 58.896 38.462 8.21 0.00 44.07 3.01
280 285 7.284716 TCGTACATATCATCTACTGAAACCAGT 59.715 37.037 3.47 3.47 45.94 4.00
305 315 6.238484 CCCCTCGAAAAAGTCACAATATCATC 60.238 42.308 0.00 0.00 0.00 2.92
321 331 2.485038 GCGTTGTATTTTCCCCTCGAAA 59.515 45.455 0.00 0.00 38.74 3.46
331 341 9.507280 CATTTCAGATTATCAGCGTTGTATTTT 57.493 29.630 0.00 0.00 0.00 1.82
333 343 8.213518 ACATTTCAGATTATCAGCGTTGTATT 57.786 30.769 0.00 0.00 0.00 1.89
340 350 3.804325 ACGGACATTTCAGATTATCAGCG 59.196 43.478 0.00 0.00 0.00 5.18
347 357 4.744631 GTGCAAAAACGGACATTTCAGATT 59.255 37.500 0.00 0.00 0.00 2.40
350 360 2.467305 CGTGCAAAAACGGACATTTCAG 59.533 45.455 0.00 0.00 39.89 3.02
353 363 1.204792 GCGTGCAAAAACGGACATTT 58.795 45.000 0.00 0.00 43.75 2.32
367 377 2.502510 CAAATGCAGACCGCGTGC 60.503 61.111 12.75 12.75 46.97 5.34
369 379 0.383949 AAAACAAATGCAGACCGCGT 59.616 45.000 4.92 0.00 46.97 6.01
370 380 1.486439 AAAAACAAATGCAGACCGCG 58.514 45.000 0.00 0.00 46.97 6.46
390 400 6.508030 TGAAGCAGGTGGTATATTTGGATA 57.492 37.500 0.00 0.00 0.00 2.59
391 401 5.387113 TGAAGCAGGTGGTATATTTGGAT 57.613 39.130 0.00 0.00 0.00 3.41
392 402 4.853468 TGAAGCAGGTGGTATATTTGGA 57.147 40.909 0.00 0.00 0.00 3.53
394 404 6.148480 GCTAGATGAAGCAGGTGGTATATTTG 59.852 42.308 0.00 0.00 42.30 2.32
397 407 5.413309 GCTAGATGAAGCAGGTGGTATAT 57.587 43.478 0.00 0.00 42.30 0.86
398 408 4.873746 GCTAGATGAAGCAGGTGGTATA 57.126 45.455 0.00 0.00 42.30 1.47
399 409 3.760580 GCTAGATGAAGCAGGTGGTAT 57.239 47.619 0.00 0.00 42.30 2.73
432 442 5.105877 ACAGATTGATGGACAAAATGCAGAG 60.106 40.000 0.00 0.00 42.03 3.35
454 465 7.946219 AGAATTATGATAATGGAGGAATGCACA 59.054 33.333 0.00 0.00 0.00 4.57
455 466 8.345724 AGAATTATGATAATGGAGGAATGCAC 57.654 34.615 0.00 0.00 0.00 4.57
458 469 9.021807 AGCAAGAATTATGATAATGGAGGAATG 57.978 33.333 0.00 0.00 0.00 2.67
479 490 4.573607 TGCACATATTAAGCTGAGAGCAAG 59.426 41.667 0.00 0.00 45.56 4.01
490 501 6.366644 GCATATTTGCGTGCACATATTAAG 57.633 37.500 18.64 0.00 39.49 1.85
526 537 5.896678 AGTAGGGAGAGATACATCATATGGC 59.103 44.000 2.13 0.00 33.60 4.40
531 542 5.150715 TGCAAGTAGGGAGAGATACATCAT 58.849 41.667 0.00 0.00 0.00 2.45
606 841 9.474249 GCAACATTCTCTAATTACGTTCTTTAC 57.526 33.333 0.00 0.00 0.00 2.01
607 842 9.210329 TGCAACATTCTCTAATTACGTTCTTTA 57.790 29.630 0.00 0.00 0.00 1.85
611 846 8.895932 AAATGCAACATTCTCTAATTACGTTC 57.104 30.769 0.00 0.00 0.00 3.95
738 991 7.743749 ACAAGCTATCTCAGATTACCATCAAT 58.256 34.615 0.00 0.00 29.80 2.57
764 1017 2.487934 CTGCCTTGGTCCAATCGATAG 58.512 52.381 4.34 0.00 0.00 2.08
803 1060 1.627864 CCCGTTTTGAAGGTCCCATT 58.372 50.000 0.00 0.00 0.00 3.16
861 1122 4.499116 CGGGAGGAGGGTGGGGAT 62.499 72.222 0.00 0.00 0.00 3.85
903 1167 2.409055 CGTGTGGGCATGTGGATGG 61.409 63.158 0.00 0.00 0.00 3.51
918 1182 4.135153 CACCCCTCCTCTCGCGTG 62.135 72.222 5.77 3.13 0.00 5.34
919 1183 4.361971 TCACCCCTCCTCTCGCGT 62.362 66.667 5.77 0.00 0.00 6.01
931 1214 1.997874 ATGCAGGAGGAGGTCACCC 60.998 63.158 0.00 0.00 0.00 4.61
956 1239 4.316823 AGGGAGGGAGGCGTGTCA 62.317 66.667 0.00 0.00 0.00 3.58
1122 1405 1.081481 AGGAAACGGGAGGGGAAATT 58.919 50.000 0.00 0.00 0.00 1.82
1124 1407 1.063654 ACAGGAAACGGGAGGGGAAA 61.064 55.000 0.00 0.00 0.00 3.13
1127 1410 1.489560 AAGACAGGAAACGGGAGGGG 61.490 60.000 0.00 0.00 0.00 4.79
1129 1412 0.685097 TGAAGACAGGAAACGGGAGG 59.315 55.000 0.00 0.00 0.00 4.30
1143 1426 5.811399 AACGTCACAAAATGTTCTGAAGA 57.189 34.783 0.00 0.00 0.00 2.87
1174 1493 1.284982 CGCCTCCACTGACGAAACAG 61.285 60.000 0.00 0.00 42.78 3.16
1287 1606 4.803426 GCTGCAGTCGACCCCTCG 62.803 72.222 16.64 0.00 41.65 4.63
1310 1629 5.446741 CGGTTATTACATTTTGGTGACGGAG 60.447 44.000 0.00 0.00 0.00 4.63
1349 1668 1.107945 AGTTTGGTTTGGTGGTTCGG 58.892 50.000 0.00 0.00 0.00 4.30
1351 1670 4.180817 CAAGAAGTTTGGTTTGGTGGTTC 58.819 43.478 0.00 0.00 0.00 3.62
1352 1671 3.618752 GCAAGAAGTTTGGTTTGGTGGTT 60.619 43.478 0.00 0.00 0.00 3.67
1353 1672 2.093711 GCAAGAAGTTTGGTTTGGTGGT 60.094 45.455 0.00 0.00 0.00 4.16
1354 1673 2.168313 AGCAAGAAGTTTGGTTTGGTGG 59.832 45.455 0.00 0.00 30.87 4.61
1355 1674 3.119173 TGAGCAAGAAGTTTGGTTTGGTG 60.119 43.478 0.00 0.00 32.07 4.17
1356 1675 3.096092 TGAGCAAGAAGTTTGGTTTGGT 58.904 40.909 0.00 0.00 34.33 3.67
1357 1676 3.799281 TGAGCAAGAAGTTTGGTTTGG 57.201 42.857 0.00 0.00 0.00 3.28
1358 1677 4.997565 TCTTGAGCAAGAAGTTTGGTTTG 58.002 39.130 10.30 0.00 43.79 2.93
1425 1759 4.982295 GCCAGAAAAACGAAGCTGTTAATT 59.018 37.500 0.00 0.00 0.00 1.40
1426 1760 4.278419 AGCCAGAAAAACGAAGCTGTTAAT 59.722 37.500 0.00 0.00 0.00 1.40
1437 1771 0.661020 ACGGTCAAGCCAGAAAAACG 59.339 50.000 0.00 0.00 36.97 3.60
1439 1773 2.357637 CAGAACGGTCAAGCCAGAAAAA 59.642 45.455 1.87 0.00 36.97 1.94
1568 1902 0.688087 ATGGACCGGAGAGGAGGTTC 60.688 60.000 9.46 0.00 45.00 3.62
1571 1905 2.196925 CGATGGACCGGAGAGGAGG 61.197 68.421 9.46 0.00 45.00 4.30
1602 1937 2.032799 TGAACTAAGTTGCGCAACCAAG 59.967 45.455 41.25 37.01 42.06 3.61
1698 2033 2.116125 AGCTGAACCAGGTTGGGC 59.884 61.111 10.47 13.36 43.37 5.36
1742 2077 0.821711 CCGACCACTGGAAGGCAAAA 60.822 55.000 0.71 0.00 39.30 2.44
1743 2078 1.228124 CCGACCACTGGAAGGCAAA 60.228 57.895 0.71 0.00 39.30 3.68
1744 2079 2.144078 TCCGACCACTGGAAGGCAA 61.144 57.895 0.71 0.00 39.30 4.52
1745 2080 2.525629 TCCGACCACTGGAAGGCA 60.526 61.111 0.71 0.00 39.30 4.75
1746 2081 2.047179 GTCCGACCACTGGAAGGC 60.047 66.667 0.71 0.00 39.30 4.35
1747 2082 2.663196 GGTCCGACCACTGGAAGG 59.337 66.667 13.05 4.71 38.42 3.46
1748 2083 1.481056 AAGGGTCCGACCACTGGAAG 61.481 60.000 19.43 0.00 41.02 3.46
1749 2084 1.460689 AAGGGTCCGACCACTGGAA 60.461 57.895 19.43 0.00 41.02 3.53
1750 2085 1.911766 GAAGGGTCCGACCACTGGA 60.912 63.158 19.43 0.00 41.02 3.86
1751 2086 2.663196 GAAGGGTCCGACCACTGG 59.337 66.667 19.43 0.00 41.02 4.00
1752 2087 2.663196 GGAAGGGTCCGACCACTG 59.337 66.667 19.43 0.00 41.02 3.66
1753 2088 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
1754 2089 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
1755 2090 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
1756 2091 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
1757 2092 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
1758 2093 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
1759 2094 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
1760 2095 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
1761 2096 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
1762 2097 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
1763 2098 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
1764 2099 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
1765 2100 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
1777 2112 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
1780 2115 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
1781 2116 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
1782 2117 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
1783 2118 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
1789 2124 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
1790 2125 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
1791 2126 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
1792 2127 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
1793 2128 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
1805 2140 1.187567 AGCAACCATGGAAGGGCAAC 61.188 55.000 21.47 0.00 45.79 4.17
1806 2141 1.155859 AGCAACCATGGAAGGGCAA 59.844 52.632 21.47 0.00 45.79 4.52
1807 2142 1.607178 CAGCAACCATGGAAGGGCA 60.607 57.895 21.47 0.00 45.79 5.36
1808 2143 1.187567 AACAGCAACCATGGAAGGGC 61.188 55.000 21.47 15.43 45.79 5.19
1829 2164 1.752694 CTAATGGGGTTGCCCGTGG 60.753 63.158 0.00 0.00 46.66 4.94
1836 2171 4.261801 CACTGGTCTAACTAATGGGGTTG 58.738 47.826 0.00 0.00 0.00 3.77
1839 2174 2.741878 CGCACTGGTCTAACTAATGGGG 60.742 54.545 0.00 0.00 0.00 4.96
1851 2186 5.734855 ACATATGATAAAACGCACTGGTC 57.265 39.130 10.38 0.00 0.00 4.02
1859 2194 7.408910 TCTGCATCACAACATATGATAAAACG 58.591 34.615 10.38 0.00 34.99 3.60
1887 2222 1.810151 GTAAACGCATTCCCTTGCAGA 59.190 47.619 0.00 0.00 42.91 4.26
1920 2255 3.381590 CAGACATCTGAGATACCGACCAA 59.618 47.826 2.51 0.00 46.59 3.67
1922 2257 3.634568 CAGACATCTGAGATACCGACC 57.365 52.381 2.51 0.00 46.59 4.79
1947 2282 9.039870 CATGAAATAGATTCTTACAGTGTCTCC 57.960 37.037 0.00 0.00 38.92 3.71
1995 2330 9.984190 TCAATCAAGAAAAACAATCATCATGAA 57.016 25.926 0.00 0.00 0.00 2.57
1996 2331 9.984190 TTCAATCAAGAAAAACAATCATCATGA 57.016 25.926 0.00 0.00 0.00 3.07
2036 2371 2.554272 CGGTCCGTTGAAAAGGCG 59.446 61.111 2.08 0.00 0.00 5.52
2066 2401 3.006940 CTGCCCGTTTAAGTGATTGCTA 58.993 45.455 0.00 0.00 0.00 3.49
2093 2428 1.126846 GGAAGTTGCGAGAACATGTCG 59.873 52.381 0.00 0.00 40.50 4.35
2103 2438 1.512926 GAGAGCTTTGGAAGTTGCGA 58.487 50.000 0.00 0.00 0.00 5.10
2137 2472 4.401022 TGGACTGTGAATCTGATTTTGCT 58.599 39.130 4.11 0.00 0.00 3.91
2141 2476 6.094603 GCTACAATGGACTGTGAATCTGATTT 59.905 38.462 4.11 0.00 0.00 2.17
2143 2478 5.104610 AGCTACAATGGACTGTGAATCTGAT 60.105 40.000 0.00 0.00 0.00 2.90
2144 2479 4.223700 AGCTACAATGGACTGTGAATCTGA 59.776 41.667 0.00 0.00 0.00 3.27
2145 2480 4.511527 AGCTACAATGGACTGTGAATCTG 58.488 43.478 0.00 0.00 0.00 2.90
2147 2482 4.509600 GCTAGCTACAATGGACTGTGAATC 59.490 45.833 7.70 0.00 0.00 2.52
2148 2483 4.080919 TGCTAGCTACAATGGACTGTGAAT 60.081 41.667 17.23 0.00 0.00 2.57
2150 2485 2.831526 TGCTAGCTACAATGGACTGTGA 59.168 45.455 17.23 0.00 0.00 3.58
2151 2486 3.251479 TGCTAGCTACAATGGACTGTG 57.749 47.619 17.23 0.00 0.00 3.66
2152 2487 3.708631 AGATGCTAGCTACAATGGACTGT 59.291 43.478 17.23 0.00 0.00 3.55
2153 2488 4.039004 AGAGATGCTAGCTACAATGGACTG 59.961 45.833 17.23 0.00 0.00 3.51
2154 2489 4.222336 AGAGATGCTAGCTACAATGGACT 58.778 43.478 17.23 2.12 0.00 3.85
2157 2492 4.749099 GTGAAGAGATGCTAGCTACAATGG 59.251 45.833 17.23 0.00 0.00 3.16
2166 2501 7.119699 TGTGGTAAATTTGTGAAGAGATGCTAG 59.880 37.037 0.00 0.00 0.00 3.42
2167 2502 6.939730 TGTGGTAAATTTGTGAAGAGATGCTA 59.060 34.615 0.00 0.00 0.00 3.49
2168 2503 5.769662 TGTGGTAAATTTGTGAAGAGATGCT 59.230 36.000 0.00 0.00 0.00 3.79
2169 2504 6.012658 TGTGGTAAATTTGTGAAGAGATGC 57.987 37.500 0.00 0.00 0.00 3.91
2170 2505 7.206981 ACTGTGGTAAATTTGTGAAGAGATG 57.793 36.000 0.00 0.00 0.00 2.90
2172 2507 7.639113 AAACTGTGGTAAATTTGTGAAGAGA 57.361 32.000 0.00 0.00 0.00 3.10
2212 2547 5.276461 TCTCTGTTGCCGTGACATTATAT 57.724 39.130 0.00 0.00 0.00 0.86
2213 2548 4.729227 TCTCTGTTGCCGTGACATTATA 57.271 40.909 0.00 0.00 0.00 0.98
2214 2549 3.610040 TCTCTGTTGCCGTGACATTAT 57.390 42.857 0.00 0.00 0.00 1.28
2222 2557 0.687354 AACCTCATCTCTGTTGCCGT 59.313 50.000 0.00 0.00 0.00 5.68
2226 2561 3.126514 GCATCACAACCTCATCTCTGTTG 59.873 47.826 0.00 0.00 43.76 3.33
2236 2571 3.406764 AGAAGTCAAGCATCACAACCTC 58.593 45.455 0.00 0.00 0.00 3.85
2237 2572 3.498774 AGAAGTCAAGCATCACAACCT 57.501 42.857 0.00 0.00 0.00 3.50
2238 2573 4.574599 AAAGAAGTCAAGCATCACAACC 57.425 40.909 0.00 0.00 0.00 3.77
2240 2575 5.591099 GGAAAAAGAAGTCAAGCATCACAA 58.409 37.500 0.00 0.00 0.00 3.33
2241 2576 4.261155 CGGAAAAAGAAGTCAAGCATCACA 60.261 41.667 0.00 0.00 0.00 3.58
2242 2577 4.222114 CGGAAAAAGAAGTCAAGCATCAC 58.778 43.478 0.00 0.00 0.00 3.06
2243 2578 3.253188 CCGGAAAAAGAAGTCAAGCATCA 59.747 43.478 0.00 0.00 0.00 3.07
2244 2579 3.253432 ACCGGAAAAAGAAGTCAAGCATC 59.747 43.478 9.46 0.00 0.00 3.91
2245 2580 3.222603 ACCGGAAAAAGAAGTCAAGCAT 58.777 40.909 9.46 0.00 0.00 3.79
2246 2581 2.616842 GACCGGAAAAAGAAGTCAAGCA 59.383 45.455 9.46 0.00 0.00 3.91
2247 2582 2.616842 TGACCGGAAAAAGAAGTCAAGC 59.383 45.455 9.46 0.00 34.68 4.01
2248 2583 4.893424 TTGACCGGAAAAAGAAGTCAAG 57.107 40.909 9.46 0.00 41.25 3.02
2249 2584 5.587289 CATTTGACCGGAAAAAGAAGTCAA 58.413 37.500 9.46 0.44 43.62 3.18
2250 2585 4.499019 GCATTTGACCGGAAAAAGAAGTCA 60.499 41.667 9.46 0.00 35.75 3.41
2251 2586 3.981416 GCATTTGACCGGAAAAAGAAGTC 59.019 43.478 9.46 0.00 0.00 3.01
2252 2587 3.383185 TGCATTTGACCGGAAAAAGAAGT 59.617 39.130 9.46 0.00 0.00 3.01
2253 2588 3.976169 TGCATTTGACCGGAAAAAGAAG 58.024 40.909 9.46 4.08 0.00 2.85
2254 2589 4.599047 ATGCATTTGACCGGAAAAAGAA 57.401 36.364 9.46 0.04 0.00 2.52
2255 2590 5.649557 CATATGCATTTGACCGGAAAAAGA 58.350 37.500 9.46 0.00 0.00 2.52
2256 2591 4.268405 GCATATGCATTTGACCGGAAAAAG 59.732 41.667 22.84 6.85 41.59 2.27
2257 2592 4.081752 AGCATATGCATTTGACCGGAAAAA 60.082 37.500 28.62 8.77 45.16 1.94
2258 2593 3.446873 AGCATATGCATTTGACCGGAAAA 59.553 39.130 28.62 9.19 45.16 2.29
2259 2594 3.023119 AGCATATGCATTTGACCGGAAA 58.977 40.909 28.62 0.00 45.16 3.13
2260 2595 2.653726 AGCATATGCATTTGACCGGAA 58.346 42.857 28.62 0.00 45.16 4.30
2261 2596 2.346766 AGCATATGCATTTGACCGGA 57.653 45.000 28.62 0.00 45.16 5.14
2262 2597 2.358582 TCAAGCATATGCATTTGACCGG 59.641 45.455 28.62 0.00 45.16 5.28
2263 2598 3.696281 TCAAGCATATGCATTTGACCG 57.304 42.857 28.62 4.99 45.16 4.79
2264 2599 5.277154 GCAAATCAAGCATATGCATTTGACC 60.277 40.000 34.03 22.62 45.16 4.02
2265 2600 5.522460 AGCAAATCAAGCATATGCATTTGAC 59.478 36.000 34.03 27.61 45.16 3.18
2266 2601 5.666462 AGCAAATCAAGCATATGCATTTGA 58.334 33.333 34.03 30.29 45.16 2.69
2267 2602 5.332280 CGAGCAAATCAAGCATATGCATTTG 60.332 40.000 29.72 29.72 45.16 2.32
2268 2603 4.743151 CGAGCAAATCAAGCATATGCATTT 59.257 37.500 28.62 21.07 45.16 2.32
2269 2604 4.295870 CGAGCAAATCAAGCATATGCATT 58.704 39.130 28.62 16.73 45.16 3.56
2270 2605 3.305131 CCGAGCAAATCAAGCATATGCAT 60.305 43.478 28.62 15.43 45.16 3.96
2271 2606 2.033675 CCGAGCAAATCAAGCATATGCA 59.966 45.455 28.62 9.60 45.16 3.96
2272 2607 2.291465 TCCGAGCAAATCAAGCATATGC 59.709 45.455 20.36 20.36 42.49 3.14
2273 2608 3.608707 GCTCCGAGCAAATCAAGCATATG 60.609 47.826 15.78 0.00 41.89 1.78
2274 2609 2.551459 GCTCCGAGCAAATCAAGCATAT 59.449 45.455 15.78 0.00 41.89 1.78
2275 2610 1.942657 GCTCCGAGCAAATCAAGCATA 59.057 47.619 15.78 0.00 41.89 3.14
2288 2623 8.425577 TCAGAAGAAAATTAATAAGCTCCGAG 57.574 34.615 0.00 0.00 0.00 4.63
2289 2624 8.964476 ATCAGAAGAAAATTAATAAGCTCCGA 57.036 30.769 0.00 0.00 0.00 4.55
2314 2649 9.665719 TGATGACACAAATAGAATTGCTTACTA 57.334 29.630 0.00 0.00 33.52 1.82
2361 2696 2.751688 GGGCAGGTTACCGGACAA 59.248 61.111 9.46 0.00 0.00 3.18
2363 2698 3.324108 TGGGGCAGGTTACCGGAC 61.324 66.667 9.46 1.30 0.00 4.79
2411 2746 0.733150 GAATCCGGTTGCCTTACAGC 59.267 55.000 0.00 0.00 0.00 4.40
2424 2759 4.184629 CCAGTGAAGTTCCTAAGAATCCG 58.815 47.826 0.00 0.00 33.67 4.18
2461 2796 8.583810 AAAAGATTGACAGTCATTTGTTGATG 57.416 30.769 3.45 0.00 36.54 3.07
2501 2836 2.501723 TGCTCTCCAAGTTCCTGGATAC 59.498 50.000 0.00 0.00 44.59 2.24
2542 2877 1.673920 GAAAGTTTGGCCAGAACGTCA 59.326 47.619 18.80 0.00 32.38 4.35
2608 2943 2.344142 CGTGGCGATAAAATTGGTTTGC 59.656 45.455 0.00 0.00 0.00 3.68
2628 2963 3.236816 CAGAAGCATGCACTTTTAACCG 58.763 45.455 21.98 1.60 0.00 4.44
2640 2975 7.029563 GGTTGAAGTAATTAACCAGAAGCATG 58.970 38.462 2.75 0.00 42.60 4.06
2665 3000 3.739300 CACTGCTTCTTTTGCATTTCCAG 59.261 43.478 0.00 0.00 39.86 3.86
2723 3058 9.865484 GTAACTTTTCAAGTAGACTAAGCAAAG 57.135 33.333 0.00 5.98 41.91 2.77
2732 3067 9.477484 TCTGAATCAGTAACTTTTCAAGTAGAC 57.523 33.333 10.36 0.00 35.16 2.59
2778 3113 7.651304 CGTTCTAGCTTAGTTCTGAATCATCAT 59.349 37.037 0.00 0.00 34.37 2.45
2896 3231 0.605589 GTTGGGTGCAGGTACCACTC 60.606 60.000 15.94 4.02 42.69 3.51
2932 3267 6.140786 CACTGTCAGAACTCATGAAATTGTG 58.859 40.000 6.91 9.22 0.00 3.33
3013 3348 1.915078 AAGACCCCTTCTCCATGCCG 61.915 60.000 0.00 0.00 31.02 5.69
3057 3392 0.458025 GTTGATCCCGACGTCACTCC 60.458 60.000 17.16 0.81 0.00 3.85
3121 3456 4.211164 TGCAACACTGACAAGAGAATAACG 59.789 41.667 0.00 0.00 0.00 3.18
3208 3543 4.607778 GCTCTTGTCGAAAGGAACGTAAAC 60.608 45.833 0.00 0.00 0.00 2.01
3236 3571 2.479566 ACTGGTGGTTGCATCAGTAG 57.520 50.000 0.00 0.00 43.98 2.57
3255 3590 4.404640 ACAAGTACCTGCAGACACTACTA 58.595 43.478 17.39 0.00 0.00 1.82
3256 3591 3.231818 ACAAGTACCTGCAGACACTACT 58.768 45.455 17.39 10.89 0.00 2.57
3257 3592 3.662247 ACAAGTACCTGCAGACACTAC 57.338 47.619 17.39 8.79 0.00 2.73
3264 3599 4.615912 GCCAAAATGTACAAGTACCTGCAG 60.616 45.833 6.78 6.78 35.26 4.41
3276 3611 2.829741 TGCCCAAAGCCAAAATGTAC 57.170 45.000 0.00 0.00 42.71 2.90
3290 3625 4.112634 AGACAAGAAACCTTATTGCCCA 57.887 40.909 0.00 0.00 0.00 5.36
3294 3629 5.941948 ACGGAAGACAAGAAACCTTATTG 57.058 39.130 0.00 0.00 0.00 1.90
3302 3637 3.181491 CCTGCAAAACGGAAGACAAGAAA 60.181 43.478 0.00 0.00 0.00 2.52
3315 3650 2.818130 TGAAGAATGGCCTGCAAAAC 57.182 45.000 3.32 0.00 0.00 2.43
3346 3681 0.036388 TCGATTTCTCCAGCGGCTTT 60.036 50.000 0.00 0.00 0.00 3.51
3385 3720 0.606401 TGTAAGGCACAGAAGGCAGC 60.606 55.000 0.00 0.00 36.37 5.25
3426 3761 9.007901 GCCTAGAATTGTTTAGCATTATCTGAT 57.992 33.333 0.00 0.00 0.00 2.90
3433 3768 4.523083 TCCGCCTAGAATTGTTTAGCATT 58.477 39.130 0.00 0.00 0.00 3.56
3487 3822 1.868251 CGCTTGTAGCTCCGACGAC 60.868 63.158 0.00 0.00 39.60 4.34
3493 3828 2.820037 GTGGCCGCTTGTAGCTCC 60.820 66.667 9.68 0.00 39.60 4.70
3593 3928 1.486310 TGGAGGGAAATCATGAGGACG 59.514 52.381 0.09 0.00 0.00 4.79
3628 3963 7.670140 TCGAGATGATACTGTGGGATAGTTTAT 59.330 37.037 0.00 0.00 0.00 1.40
3643 3978 4.911053 ACGTTGACTTCTCGAGATGATAC 58.089 43.478 29.12 21.08 0.00 2.24
3729 4065 6.592798 AAACATTCAGTTCAACAGCATTTG 57.407 33.333 0.00 0.00 40.26 2.32
3775 4111 2.610232 CCAACCATTTTTCTTCAGGCCG 60.610 50.000 0.00 0.00 0.00 6.13
3792 4128 1.066502 GGCCTCTTGACTCTCTCCAAC 60.067 57.143 0.00 0.00 0.00 3.77
3799 4135 0.178921 TGTCCAGGCCTCTTGACTCT 60.179 55.000 21.23 0.00 36.81 3.24
3800 4136 0.908198 ATGTCCAGGCCTCTTGACTC 59.092 55.000 21.23 3.61 36.81 3.36
4046 4382 5.624509 CGTCTGACAAATGGAGGAACTGATA 60.625 44.000 8.73 0.00 41.55 2.15
4049 4385 2.738846 CGTCTGACAAATGGAGGAACTG 59.261 50.000 8.73 0.00 41.55 3.16
4057 4393 3.684305 TGCTGTAATCGTCTGACAAATGG 59.316 43.478 8.73 0.00 0.00 3.16
4368 4704 1.134699 CCCTCATTCTACGAGCAAGCA 60.135 52.381 0.00 0.00 0.00 3.91
4369 4705 1.576356 CCCTCATTCTACGAGCAAGC 58.424 55.000 0.00 0.00 0.00 4.01
4508 4844 0.107993 CTCGAGCATGACCACACCAT 60.108 55.000 0.00 0.00 0.00 3.55
4644 4980 2.507484 TGACCAAGGACTGCTCATTTG 58.493 47.619 0.00 0.00 0.00 2.32
4846 5182 9.252962 CAACAAAGAGCAGTTTTCAGATTTATT 57.747 29.630 0.00 0.00 0.00 1.40
4847 5183 7.869429 CCAACAAAGAGCAGTTTTCAGATTTAT 59.131 33.333 0.00 0.00 0.00 1.40
5065 5401 1.202770 ACCAGTGTTGCTTACCCTCAC 60.203 52.381 0.00 0.00 0.00 3.51
5146 5482 7.439056 ACATTTTCAAACATGACTCATTTCACC 59.561 33.333 0.00 0.00 0.00 4.02
5155 5491 5.850557 TCACCACATTTTCAAACATGACT 57.149 34.783 0.00 0.00 0.00 3.41
5173 5509 3.138304 TCAGTGCAGTTACATGTTCACC 58.862 45.455 2.30 0.00 0.00 4.02
5203 5539 0.326927 ATGGGTAAACACACGGGGAG 59.673 55.000 0.00 0.00 28.47 4.30
5283 5632 6.537660 TCAGTGCTGATGATCTTTGATGTTAG 59.462 38.462 0.00 0.00 34.14 2.34
5313 5662 6.018913 GCTTGTGAGTTCTATGATGTGATCAG 60.019 42.308 0.00 0.00 43.53 2.90
5322 5671 4.022329 TCAACGAGCTTGTGAGTTCTATGA 60.022 41.667 7.56 1.93 31.57 2.15
5327 5676 2.091277 CGATCAACGAGCTTGTGAGTTC 59.909 50.000 7.56 7.45 45.77 3.01
5398 5756 6.455646 GCGTGTCATTGTGTATTAGAAGAAGG 60.456 42.308 0.00 0.00 0.00 3.46
5452 5810 3.457234 CTGGTTGTTTGAGCCTTTTTCC 58.543 45.455 0.00 0.00 0.00 3.13
5463 5821 2.033801 CAGAAGAGGTGCTGGTTGTTTG 59.966 50.000 0.00 0.00 0.00 2.93
5473 5831 2.452505 ACTAGGTCTCAGAAGAGGTGC 58.547 52.381 0.00 0.00 42.34 5.01
5546 5904 0.313987 CGACGATGCATACTAGGGCA 59.686 55.000 0.00 8.19 45.23 5.36
5548 5906 0.729478 CGCGACGATGCATACTAGGG 60.729 60.000 0.00 0.00 34.15 3.53
5557 5915 0.162933 TTTTCTTGTCGCGACGATGC 59.837 50.000 31.88 10.78 38.42 3.91
5609 5967 1.067425 TGTTGAGGCATCAAGCAATGC 60.067 47.619 15.13 0.00 45.96 3.56
5639 5997 2.093447 CCCTTGTGATGTGACCCTAGAC 60.093 54.545 0.00 0.00 0.00 2.59
5640 5998 2.187958 CCCTTGTGATGTGACCCTAGA 58.812 52.381 0.00 0.00 0.00 2.43
5641 5999 2.169352 CTCCCTTGTGATGTGACCCTAG 59.831 54.545 0.00 0.00 0.00 3.02
5748 6106 3.118629 TCCTGTCTTACTGATGGATGCAC 60.119 47.826 0.00 0.00 0.00 4.57
5778 6136 1.326951 ACCAGTTTGTGCCACCCAAC 61.327 55.000 0.00 0.00 0.00 3.77
5789 6147 4.021102 AGTAATCCACTCCACCAGTTTG 57.979 45.455 0.00 0.00 30.26 2.93
5802 6160 4.405680 CCATGGACAGTGACTAGTAATCCA 59.594 45.833 5.56 12.75 39.02 3.41
5803 6161 4.649674 TCCATGGACAGTGACTAGTAATCC 59.350 45.833 11.44 0.00 0.00 3.01
5804 6162 5.854010 TCCATGGACAGTGACTAGTAATC 57.146 43.478 11.44 0.00 0.00 1.75
5805 6163 5.899547 TCATCCATGGACAGTGACTAGTAAT 59.100 40.000 18.99 0.00 0.00 1.89
5807 6165 4.867086 TCATCCATGGACAGTGACTAGTA 58.133 43.478 18.99 0.00 0.00 1.82
5808 6166 3.713003 TCATCCATGGACAGTGACTAGT 58.287 45.455 18.99 0.00 0.00 2.57
5827 6185 2.423231 CCCATGCAGGTAATCCACATCA 60.423 50.000 0.00 0.00 32.78 3.07
5860 6218 2.298729 TGCATTTAAACTGACCAAGGCC 59.701 45.455 0.00 0.00 0.00 5.19
5889 6247 1.227380 GCCGTCAGAATCGCCATCT 60.227 57.895 0.00 0.00 0.00 2.90
5977 6335 0.685097 AGCCGAGCCAAGTCTTTGTA 59.315 50.000 0.00 0.00 32.21 2.41
6172 6530 5.245075 TGAACTTTTAAGGGTTATTGCTGGG 59.755 40.000 0.00 0.00 0.00 4.45
6364 6722 1.661341 GTCCATGTGATCAGCCTGAC 58.339 55.000 0.00 0.00 0.00 3.51
6384 6742 2.052104 GCCTTCCCGGTTCCATTGG 61.052 63.158 0.00 0.00 34.25 3.16
6402 6763 3.010144 CATCTGGGGTCAAGGGGG 58.990 66.667 0.00 0.00 0.00 5.40
6421 6782 1.423395 CAAGTTCAGTGAGGAGTCGC 58.577 55.000 0.00 0.00 0.00 5.19
6426 6787 5.071788 AGTTACATTCCAAGTTCAGTGAGGA 59.928 40.000 0.00 0.00 0.00 3.71
6511 6872 2.972625 TGCGTAAAAGAGGGTCATGAG 58.027 47.619 0.00 0.00 0.00 2.90
6631 6992 3.334691 CAGGCTTTCTAATTCGACACCA 58.665 45.455 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.